AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0727510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0727510 MtrunA17_Chr5g0419801 99.448 362 2 0 1 362 1 362 0.0 751
Msa0727510 MtrunA17_Chr7g0219951 90.029 341 34 0 5 345 2 342 0.0 653
Msa0727510 MtrunA17_Chr2g0308361 88.047 343 41 0 3 345 2 344 0.0 646
Msa0727510 MtrunA17_Chr6g0455451 87.246 345 41 1 1 345 1 342 0.0 641
Msa0727510 MtrunA17_Chr7g0249031 49.706 340 165 4 13 347 9 347 2.21e-128 372
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0727510 AT3G08900.1 88.184 347 41 0 1 347 4 350 0.0 658
Msa0727510 AT5G15650.1 89.474 342 36 0 7 348 14 355 0.0 649
Msa0727510 AT3G02230.1 90.774 336 31 0 10 345 17 352 0.0 647
Msa0727510 AT5G50750.1 77.233 347 79 0 8 354 11 357 0.0 588
Msa0727510 AT5G16510.2 50.292 342 164 3 12 348 8 348 2.08e-126 367
Msa0727510 AT5G16510.1 50.292 342 164 3 12 348 8 348 2.08e-126 367

Find 127 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCTTGTATCTCCTTTA+AGG 0.124351 5_1:+29996223 Msa0727510:CDS
CTGCCGTTTCTCACGGTCTT+TGG 0.210662 5_1:+29997405 Msa0727510:CDS
GAGATGATATTGTTCGAAAA+AGG 0.233220 5_1:-29996096 None:intergenic
TTGTCGTTGCTTTGGTTATA+TGG 0.255025 5_1:+29996253 Msa0727510:CDS
AAATCGGCACCGTCTCTATA+TGG 0.295550 5_1:-29997341 None:intergenic
CCCATTTGTGAATCTGAAAA+AGG 0.310657 5_1:+29998303 Msa0727510:CDS
ATCTGTGACCATTTGGGACT+TGG 0.319329 5_1:+29998235 Msa0727510:CDS
ATCGGCTAGTTTGACGAAAT+AGG 0.329742 5_1:-29998464 None:intergenic
AAGGAGATACAAGAAGCTTT+AGG 0.331748 5_1:-29996218 None:intergenic
GCGTGCTTTCCCGTTTCAAA+TGG 0.332765 5_1:-29995812 None:intergenic
ACGACAAGCAGAATCCTTAA+AGG 0.341341 5_1:-29996237 None:intergenic
TATTGTGGGCCTGTCCGGTC+TGG 0.342303 5_1:+29998777 Msa0727510:three_prime_UTR
TCAATATCAATAAGTTGTTC+TGG 0.346035 5_1:-29998695 None:intergenic
ACAGGTTATCTGTGACCATT+TGG 0.355312 5_1:+29998228 Msa0727510:intron
TATGATCCTTATTGTATTGT+GGG 0.360130 5_1:+29998763 Msa0727510:three_prime_UTR
GCTTTGCTGTGCCATATGTA+TGG 0.361149 5_1:-29998274 None:intergenic
CCCCATGTGCGGTATGAATC+TGG 0.375879 5_1:+29997622 Msa0727510:CDS
TGTGAAGGTTTAACGTTTGT+TGG 0.379174 5_1:-29995919 None:intergenic
TAATGATATCAATAGGATCT+TGG 0.382219 5_1:+29996193 Msa0727510:CDS
ATGGGTGATGGTCAGCCTAT+TGG 0.385375 5_1:+29997689 Msa0727510:CDS
GGTATATATATAGAAAGATT+AGG 0.387881 5_1:-29995898 None:intergenic
AGCTCATAATCAAATCCTTC+AGG 0.392381 5_1:-29996161 None:intergenic
GATTCTGCTTGTCGTTGCTT+TGG 0.394632 5_1:+29996245 Msa0727510:CDS
AGGGTATCCACGGACGAAAT+CGG 0.407391 5_1:-29997357 None:intergenic
GGCCGGCTTGACTAGTCGTC+TGG 0.411735 5_1:-29998801 None:intergenic
AGCTTCTACGACAGGACAAT+CGG 0.416086 5_1:+29998837 Msa0727510:three_prime_UTR
TTTGAGAAGTGCGGTTGGTT+TGG 0.416442 5_1:-29996012 None:intergenic
GGTCACTTGGATTGAAGCTT+GGG 0.417754 5_1:+29998492 Msa0727510:CDS
TATTGTATTGTGGGCCTGTC+CGG 0.424521 5_1:+29998772 Msa0727510:three_prime_UTR
TCGGCTAGTTTGACGAAATA+GGG 0.426172 5_1:-29998463 None:intergenic
GACAGGCCCACAATACAATA+AGG 0.429385 5_1:-29998769 None:intergenic
CTATAACAAGTTGTTTCACT+TGG 0.430220 5_1:-29998572 None:intergenic
TGCAATGTACTTCGGACTCA+TGG 0.434284 5_1:+29997670 Msa0727510:CDS
AATGATATCAATAGGATCTT+GGG 0.439584 5_1:+29996194 Msa0727510:CDS
ACAATCGTAATGATATCAAT+AGG 0.445544 5_1:+29996186 Msa0727510:CDS
ATATCATCGTAACGTCCAAT+AGG 0.448793 5_1:-29997704 None:intergenic
CAGGTTATCTGTGACCATTT+GGG 0.455327 5_1:+29998229 Msa0727510:intron
AATCGAGGTTGCGGATGGTT+GGG 0.457285 5_1:-29996055 None:intergenic
ATTGTGGGCCTGTCCGGTCT+GGG 0.457932 5_1:+29998778 Msa0727510:three_prime_UTR
CATTGATCTCATGGCCAGTT+GGG 0.461837 5_1:-29997250 None:intergenic
TGTGTTGGAGCATCATAATC+AGG 0.463164 5_1:-29997437 None:intergenic
ATATGATCCTTATTGTATTG+TGG 0.463492 5_1:+29998762 Msa0727510:three_prime_UTR
TGGGGCTTGACAAGCTGTGT+TGG 0.464372 5_1:-29997452 None:intergenic
CAACTCAACCCATTTGAAAC+GGG 0.465856 5_1:+29995803 None:intergenic
GTCTCTATATGGATCGTAAA+GGG 0.466522 5_1:-29997330 None:intergenic
TGCTGTTATGACCATTCCTA+AGG 0.466819 5_1:+29997589 Msa0727510:CDS
ACACCTAGTGTTCCTCTCAT+GGG 0.471885 5_1:-29997471 None:intergenic
AGGAGTACAAAGGTATCTTC+TGG 0.475804 5_1:+29998323 Msa0727510:CDS
ATGAGTCCGAAGTACATTGC+AGG 0.478365 5_1:-29997668 None:intergenic
GTATATATATAGAAAGATTA+GGG 0.478374 5_1:-29995897 None:intergenic
AAATCGAGGTTGCGGATGGT+TGG 0.479416 5_1:-29996056 None:intergenic
CACACCTAGTGTTCCTCTCA+TGG 0.479582 5_1:-29997472 None:intergenic
GTGGGCTGGCTGGTGCATAA+AGG 0.491087 5_1:+29997727 Msa0727510:CDS
TCAGACAAAGCTTCTGAGGC+TGG 0.491454 5_1:+29998547 Msa0727510:CDS
TGGTCACTTGGATTGAAGCT+TGG 0.492678 5_1:+29998491 Msa0727510:CDS
TCAACTCAACCCATTTGAAA+CGG 0.493585 5_1:+29995802 None:intergenic
GTTCCCACTGCCGTTTCTCA+CGG 0.495304 5_1:+29997398 Msa0727510:CDS
GAGTTTCTCCTTGACCTGCT+TGG 0.500552 5_1:-29998428 None:intergenic
TACAAAGCAATCATCATCAA+TGG 0.504987 5_1:-29996300 None:intergenic
GCTCAAGTGCATTGATCTCA+TGG 0.510252 5_1:-29997259 None:intergenic
CTTTGCTGTGCCATATGTAT+GGG 0.513558 5_1:-29998273 None:intergenic
ATGGGGAACAGTGTTCCCTT+AGG 0.514786 5_1:-29997605 None:intergenic
TCGTCTGGCCCAGACCGGAC+AGG 0.518018 5_1:-29998786 None:intergenic
CAACTTATTGATATTGATGT+CGG 0.519052 5_1:+29998701 Msa0727510:three_prime_UTR
CGTCTCTATATGGATCGTAA+AGG 0.520700 5_1:-29997331 None:intergenic
AGACCGGACTCCCATACATA+TGG 0.522972 5_1:+29998263 Msa0727510:CDS
CATCTCATCATTGTTCAAGA+TGG 0.524066 5_1:+29996113 Msa0727510:CDS
GGCCAGATTCATACCGCACA+TGG 0.525210 5_1:-29997624 None:intergenic
TAGCCGATGCTATGGTCACT+TGG 0.527668 5_1:+29998479 Msa0727510:CDS
TTGGGACTTGGAGTGAAGAC+CGG 0.528668 5_1:+29998247 Msa0727510:CDS
GACGGTGCCGATTTCGTCCG+TGG 0.531884 5_1:+29997350 Msa0727510:CDS
CAGGTTGCTAAAGACCCAAC+TGG 0.533295 5_1:+29997236 Msa0727510:intron
TTGGACGTTACGATGATATG+TGG 0.534744 5_1:+29997708 Msa0727510:CDS
GTGCCATATGTATGGGAGTC+CGG 0.536306 5_1:-29998266 None:intergenic
GAGCCAAAGACCGTGAGAAA+CGG 0.539391 5_1:-29997408 None:intergenic
GGAAAGTAACAAATGAGTGT+TGG 0.540899 5_1:-29995840 None:intergenic
CGTCAAACTAGCCGATGCTA+TGG 0.543506 5_1:+29998471 Msa0727510:CDS
TCTTCACTCCAAGTCCCAAA+TGG 0.546381 5_1:-29998243 None:intergenic
TCCGATCAGCTCACGGTCGA+AGG 0.546804 5_1:-29997645 None:intergenic
TGTTGTATGTAAAATCTGAT+CGG 0.549310 5_1:+29998891 Msa0727510:three_prime_UTR
GCCTTCGACCGTGAGCTGAT+CGG 0.550143 5_1:+29997644 Msa0727510:CDS
AGAATGAGAAAAGAAACAAA+AGG 0.551365 5_1:-29995861 None:intergenic
GCATTGATCTCATGGCCAGT+TGG 0.552346 5_1:-29997251 None:intergenic
ACCTCGATTTCCTCGAGATG+TGG 0.554905 5_1:+29996069 Msa0727510:CDS
AACTTCAGACAAAGCTTCTG+AGG 0.554956 5_1:+29998543 Msa0727510:CDS
ATCGGACCTGCAATGTACTT+CGG 0.556292 5_1:+29997662 Msa0727510:CDS
GCTTCTACGACAGGACAATC+GGG 0.558225 5_1:+29998838 Msa0727510:three_prime_UTR
ACACCTTCACGAAGACTGAA+AGG 0.560630 5_1:-29997377 None:intergenic
TATAACAAGTTGTTTCACTT+GGG 0.561370 5_1:-29998571 None:intergenic
TTCCTCTCACCATTCAACAA+TGG 0.564363 5_1:+29995980 Msa0727510:intron
GCAATGTACTTCGGACTCAT+GGG 0.570225 5_1:+29997671 Msa0727510:CDS
ACTTGTTATAGTTGATGAGA+AGG 0.571049 5_1:+29998584 Msa0727510:three_prime_UTR
ACGATGATATGTGGGCTGGC+TGG 0.572483 5_1:+29997717 Msa0727510:CDS
TCATCTTTGAGAAGTGCGGT+TGG 0.574799 5_1:-29996017 None:intergenic
TCTCGAGGAAATCGAGGTTG+CGG 0.577150 5_1:-29996064 None:intergenic
GGCCAGACGACTAGTCAAGC+CGG 0.580181 5_1:+29998799 Msa0727510:three_prime_UTR
GAGGAAATCGAGGTTGCGGA+TGG 0.582735 5_1:-29996060 None:intergenic
ACTAGTCGTCTGGCCCAGAC+CGG 0.587025 5_1:-29998791 None:intergenic
AAGCAGGTCAAGGAGAAACT+CGG 0.587789 5_1:+29998430 Msa0727510:CDS
TGAACTCTCCAAGCAGGTCA+AGG 0.588741 5_1:+29998420 Msa0727510:CDS
CACCTTCACGAAGACTGAAA+GGG 0.590828 5_1:-29997376 None:intergenic
AAAGTCATCAAAGTTCCTGA+AGG 0.594403 5_1:+29996146 Msa0727510:CDS
TACCCTTTCAGTCTTCGTGA+AGG 0.598566 5_1:+29997374 Msa0727510:CDS
GAACAGTGTTCCCTTAGGAA+TGG 0.601526 5_1:-29997600 None:intergenic
CAAATACAACAATAGCTGAT+CGG 0.603149 5_1:-29998870 None:intergenic
CGTTACGATGATATGTGGGC+TGG 0.604627 5_1:+29997713 Msa0727510:CDS
CTACATTGAACTCTCCAAGC+AGG 0.605977 5_1:+29998414 Msa0727510:CDS
TACTTCGGACTCATGGGTGA+TGG 0.607543 5_1:+29997677 Msa0727510:CDS
CACCTAGTGTTCCTCTCATG+GGG 0.607904 5_1:-29997470 None:intergenic
GCCAGATTCATACCGCACAT+GGG 0.610368 5_1:-29997623 None:intergenic
GCTGTTATGACCATTCCTAA+GGG 0.618371 5_1:+29997590 Msa0727510:CDS
AAAATGGAGTGGATGGACTG+AGG 0.618470 5_1:-29997298 None:intergenic
AAAAGGGTCTCCACATCTCG+AGG 0.620865 5_1:-29996079 None:intergenic
GAGTTCATCTTTGAGAAGTG+CGG 0.626552 5_1:-29996021 None:intergenic
AATCCAAGTGACCATAGCAT+CGG 0.629671 5_1:-29998482 None:intergenic
AAGACCGTGAGAAACGGCAG+TGG 0.632878 5_1:-29997402 None:intergenic
GAAGACTGAAAGGGTATCCA+CGG 0.633757 5_1:-29997367 None:intergenic
TCCACATCTCGAGGAAATCG+AGG 0.634078 5_1:-29996070 None:intergenic
AATGTAGCATTTCTGAACAG+AGG 0.647620 5_1:-29998398 None:intergenic
AGCTTGTCAAGCCCCATGAG+AGG 0.649128 5_1:+29997459 Msa0727510:CDS
CCAGATTCATACCGCACATG+GGG 0.650766 5_1:-29997622 None:intergenic
GGAACACTGTTCCCCATGTG+CGG 0.651276 5_1:+29997611 Msa0727510:CDS
TTGCAGGTCCGATCAGCTCA+CGG 0.652893 5_1:-29997652 None:intergenic
AGCCCCATGAGAGGAACACT+AGG 0.659919 5_1:+29997468 Msa0727510:CDS
TGGACGTTACGATGATATGT+GGG 0.662582 5_1:+29997709 Msa0727510:CDS
AGACCGTGAGAAACGGCAGT+GGG 0.666732 5_1:-29997401 None:intergenic
CTTTACGATCCATATAGAGA+CGG 0.685750 5_1:+29997332 Msa0727510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTATACTATATATTTAA+GGG - chr5_1:29997785-29997804 None:intergenic 10.0%
!! ATTAGTATACTATATATTTA+AGG - chr5_1:29997786-29997805 None:intergenic 10.0%
!! GTATATATATAGAAAGATTA+GGG - chr5_1:29995900-29995919 None:intergenic 15.0%
!! AAAAACAAAAATCAACAAAA+GGG - chr5_1:29996340-29996359 None:intergenic 15.0%
!!! TGCTTGAATTTTTTTAAAAT+TGG + chr5_1:29996616-29996635 Msa0727510:intron 15.0%
!! AAAAAAAAATGCATTATTCT+AGG - chr5_1:29998085-29998104 None:intergenic 15.0%
!! GGTATATATATAGAAAGATT+AGG - chr5_1:29995901-29995920 None:intergenic 20.0%
!! CAAAAACAAAAATCAACAAA+AGG - chr5_1:29996341-29996360 None:intergenic 20.0%
!!! CTTTTGTTGATTTTTGTTTT+TGG + chr5_1:29996339-29996358 Msa0727510:intron 20.0%
!!! ATTTGTTTTGTTTTGTTTCA+TGG + chr5_1:29996398-29996417 Msa0727510:intron 20.0%
!!! TTTGTTTTGTTTTGTTTCAT+GGG + chr5_1:29996399-29996418 Msa0727510:intron 20.0%
!!! ATTGAGAATTGATTTTCAAA+AGG + chr5_1:29996790-29996809 Msa0727510:intron 20.0%
!! TCAAATTGTTAACATTTACA+TGG + chr5_1:29996865-29996884 Msa0727510:intron 20.0%
!!! CTTGTTTTTCAATATCTTTT+TGG + chr5_1:29996890-29996909 Msa0727510:intron 20.0%
!! ATTCAATGTTAGTTGAAAAT+GGG - chr5_1:29997062-29997081 None:intergenic 20.0%
!! AATTCAATGTTAGTTGAAAA+TGG - chr5_1:29997063-29997082 None:intergenic 20.0%
!!! TATACATATGCTTTTGTTTA+CGG + chr5_1:29997525-29997544 Msa0727510:intron 20.0%
!!! TTCTTTAATTTCAAATTCCT+TGG + chr5_1:29998001-29998020 Msa0727510:intron 20.0%
!!! TCTTTAATTTCAAATTCCTT+GGG + chr5_1:29998002-29998021 Msa0727510:intron 20.0%
! AGAATGAGAAAAGAAACAAA+AGG - chr5_1:29995864-29995883 None:intergenic 25.0%
!!! AGTGTTTTGATTTTGTGTTT+GGG - chr5_1:29995947-29995966 None:intergenic 25.0%
! AGATGATATTGTTCGAAAAA+GGG - chr5_1:29996098-29996117 None:intergenic 25.0%
! ACAATCGTAATGATATCAAT+AGG + chr5_1:29996186-29996205 Msa0727510:CDS 25.0%
! TAATGATATCAATAGGATCT+TGG + chr5_1:29996193-29996212 Msa0727510:CDS 25.0%
! AATGATATCAATAGGATCTT+GGG + chr5_1:29996194-29996213 Msa0727510:CDS 25.0%
!!! GTTGATTTTTGTTTTTGGAT+CGG + chr5_1:29996344-29996363 Msa0727510:intron 25.0%
!!! AGTGATTTGCTTTTTTTGAA+GGG + chr5_1:29996456-29996475 Msa0727510:intron 25.0%
!!! TTTTGAATTTTAGCTAGATC+TGG + chr5_1:29996489-29996508 Msa0727510:intron 25.0%
!!! TTTGAATTTTAGCTAGATCT+GGG + chr5_1:29996490-29996509 Msa0727510:intron 25.0%
!!! GAAATACACTATAGTTTTGT+TGG + chr5_1:29996676-29996695 Msa0727510:intron 25.0%
!!! ATATCTTTTTGGAATGATTG+AGG + chr5_1:29996901-29996920 Msa0727510:intron 25.0%
!!! AGCAAAAGGAAAAGTTTTAA+AGG - chr5_1:29996964-29996983 None:intergenic 25.0%
!! AAAACTTTTCCTTTTGCTTT+TGG + chr5_1:29996966-29996985 Msa0727510:intron 25.0%
!!! GATTTGTTATTTGTGTAAGT+TGG + chr5_1:29997092-29997111 Msa0727510:intron 25.0%
! CATGTTTATTCTTGATTTCA+TGG + chr5_1:29997146-29997165 Msa0727510:intron 25.0%
!! TGTTTTATATTTCAATGTGC+AGG + chr5_1:29997217-29997236 Msa0727510:intron 25.0%
! TATATTTAAGGGTTGTTAAC+AGG - chr5_1:29997774-29997793 None:intergenic 25.0%
! AAAAAATGCATTATTCTAGG+TGG - chr5_1:29998082-29998101 None:intergenic 25.0%
! ATCGATAATTCATTGATGAA+TGG + chr5_1:29998205-29998224 Msa0727510:intron 25.0%
!! TATAACAAGTTGTTTCACTT+GGG - chr5_1:29998574-29998593 None:intergenic 25.0%
! TCAATATCAATAAGTTGTTC+TGG - chr5_1:29998698-29998717 None:intergenic 25.0%
! CAACTTATTGATATTGATGT+CGG + chr5_1:29998701-29998720 Msa0727510:three_prime_UTR 25.0%
! ATATGATCCTTATTGTATTG+TGG + chr5_1:29998762-29998781 Msa0727510:three_prime_UTR 25.0%
! TATGATCCTTATTGTATTGT+GGG + chr5_1:29998763-29998782 Msa0727510:three_prime_UTR 25.0%
! TGTTGTATGTAAAATCTGAT+CGG + chr5_1:29998891-29998910 Msa0727510:three_prime_UTR 25.0%
!!! GAGTGTTTTGATTTTGTGTT+TGG - chr5_1:29995948-29995967 None:intergenic 30.0%
GAGATGATATTGTTCGAAAA+AGG - chr5_1:29996099-29996118 None:intergenic 30.0%
!! GAACTTTGATGACTTTTGAA+GGG - chr5_1:29996142-29996161 None:intergenic 30.0%
TACAAAGCAATCATCATCAA+TGG - chr5_1:29996303-29996322 None:intergenic 30.0%
!!! GAGTGATTTGCTTTTTTTGA+AGG + chr5_1:29996455-29996474 Msa0727510:intron 30.0%
!!! TGCTTTTTTTGAAGGGTTTT+AGG + chr5_1:29996463-29996482 Msa0727510:intron 30.0%
!!! GCTTTTTTTGAAGGGTTTTA+GGG + chr5_1:29996464-29996483 Msa0727510:intron 30.0%
!!! CTTTTTTTGAAGGGTTTTAG+GGG + chr5_1:29996465-29996484 Msa0727510:intron 30.0%
!! CTAGTTTTTGTAGCTTGATT+TGG + chr5_1:29996542-29996561 Msa0727510:intron 30.0%
TTGAATTGAGTGTGTTTGTT+TGG + chr5_1:29996568-29996587 Msa0727510:intron 30.0%
GTAATGATTTCAAACATAGC+TGG + chr5_1:29996836-29996855 Msa0727510:intron 30.0%
GTACTGTGTTTCATATGAAA+AGG + chr5_1:29997172-29997191 Msa0727510:intron 30.0%
!! TAAAGGGTGTTGAAGAAAAA+TGG - chr5_1:29997317-29997336 None:intergenic 30.0%
TGTAATTAGCTACTTCATTG+TGG + chr5_1:29997493-29997512 Msa0727510:intron 30.0%
! AGTCATTGAGTGTATTTTTC+AGG + chr5_1:29997558-29997577 Msa0727510:intron 30.0%
GTAAAGTAAAAAACCCAATG+CGG - chr5_1:29997962-29997981 None:intergenic 30.0%
TTCACAGAAAAATAATCCCA+AGG - chr5_1:29998021-29998040 None:intergenic 30.0%
AATGCAACTAGATACTAGTT+AGG - chr5_1:29998154-29998173 None:intergenic 30.0%
AATGAATTATCGATCGTGTT+AGG - chr5_1:29998199-29998218 None:intergenic 30.0%
TAATTCATTGATGAATGGAC+AGG + chr5_1:29998210-29998229 Msa0727510:intron 30.0%
!!! CCTTTTTCAGATTCACAAAT+GGG - chr5_1:29998306-29998325 None:intergenic 30.0%
!!! TCCTTTTTCAGATTCACAAA+TGG - chr5_1:29998307-29998326 None:intergenic 30.0%
! AATCTGAAAAAGGAGTACAA+AGG + chr5_1:29998313-29998332 Msa0727510:CDS 30.0%
! CTATAACAAGTTGTTTCACT+TGG - chr5_1:29998575-29998594 None:intergenic 30.0%
!! ACTTGTTATAGTTGATGAGA+AGG + chr5_1:29998584-29998603 Msa0727510:three_prime_UTR 30.0%
!!! TAGAAGCTACTTTTTCAGTT+TGG - chr5_1:29998825-29998844 None:intergenic 30.0%
CAAATACAACAATAGCTGAT+CGG - chr5_1:29998873-29998892 None:intergenic 30.0%
TGTTGCTAAAAATAGTCAGT+CGG - chr5_1:29998927-29998946 None:intergenic 30.0%
GGAAAGTAACAAATGAGTGT+TGG - chr5_1:29995843-29995862 None:intergenic 35.0%
TGTGAAGGTTTAACGTTTGT+TGG - chr5_1:29995922-29995941 None:intergenic 35.0%
!! TTTTGTGTTTGGGTTTGTGA+AGG - chr5_1:29995937-29995956 None:intergenic 35.0%
ATGAAGAAGCCATTGTTGAA+TGG - chr5_1:29995992-29996011 None:intergenic 35.0%
CATCTCATCATTGTTCAAGA+TGG + chr5_1:29996113-29996132 Msa0727510:CDS 35.0%
!! GGAACTTTGATGACTTTTGA+AGG - chr5_1:29996143-29996162 None:intergenic 35.0%
AAAGTCATCAAAGTTCCTGA+AGG + chr5_1:29996146-29996165 Msa0727510:CDS 35.0%
AGCTCATAATCAAATCCTTC+AGG - chr5_1:29996164-29996183 None:intergenic 35.0%
AAGGAGATACAAGAAGCTTT+AGG - chr5_1:29996221-29996240 None:intergenic 35.0%
AGCTTCTTGTATCTCCTTTA+AGG + chr5_1:29996223-29996242 Msa0727510:CDS 35.0%
! TTGTCGTTGCTTTGGTTATA+TGG + chr5_1:29996253-29996272 Msa0727510:CDS 35.0%
! TGTGTTTGTTTGGAACTTCA+TGG + chr5_1:29996578-29996597 Msa0727510:intron 35.0%
! TTGTTTGGAACTTCATGGTT+AGG + chr5_1:29996583-29996602 Msa0727510:intron 35.0%
!!! TGGAGTATGAGTTTTGACTT+TGG + chr5_1:29996636-29996655 Msa0727510:intron 35.0%
!! ACTTTTCCTTTTGCTTTTGG+AGG + chr5_1:29996969-29996988 Msa0727510:intron 35.0%
GAAATCATTCTGTCCACAAA+AGG - chr5_1:29996995-29997014 None:intergenic 35.0%
GTTCTTCGATATATCTGTGA+CGG + chr5_1:29997114-29997133 Msa0727510:intron 35.0%
TTGAAGAAAAATGGAGTGGA+TGG - chr5_1:29997308-29997327 None:intergenic 35.0%
GTCTCTATATGGATCGTAAA+GGG - chr5_1:29997333-29997352 None:intergenic 35.0%
CTTTACGATCCATATAGAGA+CGG + chr5_1:29997332-29997351 Msa0727510:CDS 35.0%
ATATCATCGTAACGTCCAAT+AGG - chr5_1:29997707-29997726 None:intergenic 35.0%
TACTCACGTGATTACTTAGT+TGG + chr5_1:29997825-29997844 Msa0727510:intron 35.0%
! ATAACGTGTTTTACCGCATT+GGG + chr5_1:29997946-29997965 Msa0727510:intron 35.0%
TTATCGATCGTGTTAGGTTT+GGG - chr5_1:29998193-29998212 None:intergenic 35.0%
ATTATCGATCGTGTTAGGTT+TGG - chr5_1:29998194-29998213 None:intergenic 35.0%
CCCATTTGTGAATCTGAAAA+AGG + chr5_1:29998303-29998322 Msa0727510:CDS 35.0%
!! AGAGGTGCAATCTTTTGAAA+GGG - chr5_1:29998383-29998402 None:intergenic 35.0%
AATGTAGCATTTCTGAACAG+AGG - chr5_1:29998401-29998420 None:intergenic 35.0%
GTTGCTAAAAATAGTCAGTC+GGG - chr5_1:29998926-29998945 None:intergenic 35.0%
ATTGTTGAATGGTGAGAGGA+AGG - chr5_1:29995981-29996000 None:intergenic 40.0%
TTCCTCTCACCATTCAACAA+TGG + chr5_1:29995980-29995999 Msa0727510:intron 40.0%
! GAGTTCATCTTTGAGAAGTG+CGG - chr5_1:29996024-29996043 None:intergenic 40.0%
ACGACAAGCAGAATCCTTAA+AGG - chr5_1:29996240-29996259 None:intergenic 40.0%
AATGCCTTGATTCCTGTTCA+AGG + chr5_1:29996734-29996753 Msa0727510:intron 40.0%
TCCTGTTCAAGGTGGATAAT+AGG + chr5_1:29996745-29996764 Msa0727510:intron 40.0%
TCCTATTATCCACCTTGAAC+AGG - chr5_1:29996749-29996768 None:intergenic 40.0%
AAAAGGCCTCCAAAAGCAAA+AGG - chr5_1:29996978-29996997 None:intergenic 40.0%
! GGTGTTGAAGAAAAATGGAG+TGG - chr5_1:29997312-29997331 None:intergenic 40.0%
CGTCTCTATATGGATCGTAA+AGG - chr5_1:29997334-29997353 None:intergenic 40.0%
! TGTGTTGGAGCATCATAATC+AGG - chr5_1:29997440-29997459 None:intergenic 40.0%
TGCTGTTATGACCATTCCTA+AGG + chr5_1:29997589-29997608 Msa0727510:CDS 40.0%
GCTGTTATGACCATTCCTAA+GGG + chr5_1:29997590-29997609 Msa0727510:CDS 40.0%
TTGGACGTTACGATGATATG+TGG + chr5_1:29997708-29997727 Msa0727510:CDS 40.0%
TGGACGTTACGATGATATGT+GGG + chr5_1:29997709-29997728 Msa0727510:CDS 40.0%
! CATAACGTGTTTTACCGCAT+TGG + chr5_1:29997945-29997964 Msa0727510:intron 40.0%
TGCTTGGAAGCAGTAAAGAA+GGG - chr5_1:29998055-29998074 None:intergenic 40.0%
ATGCTTGGAAGCAGTAAAGA+AGG - chr5_1:29998056-29998075 None:intergenic 40.0%
TATTCTAGGTGGAAGATGCT+TGG - chr5_1:29998071-29998090 None:intergenic 40.0%
GCAACTAGATACTAGTTAGG+TGG - chr5_1:29998151-29998170 None:intergenic 40.0%
TATCGATCGTGTTAGGTTTG+GGG - chr5_1:29998192-29998211 None:intergenic 40.0%
ACAGGTTATCTGTGACCATT+TGG + chr5_1:29998228-29998247 Msa0727510:intron 40.0%
CAGGTTATCTGTGACCATTT+GGG + chr5_1:29998229-29998248 Msa0727510:intron 40.0%
! CTTTGCTGTGCCATATGTAT+GGG - chr5_1:29998276-29998295 None:intergenic 40.0%
!! AGGAGTACAAAGGTATCTTC+TGG + chr5_1:29998323-29998342 Msa0727510:CDS 40.0%
!! CAGAGGTGCAATCTTTTGAA+AGG - chr5_1:29998384-29998403 None:intergenic 40.0%
!! TCGGCTAGTTTGACGAAATA+GGG - chr5_1:29998466-29998485 None:intergenic 40.0%
!! ATCGGCTAGTTTGACGAAAT+AGG - chr5_1:29998467-29998486 None:intergenic 40.0%
AATCCAAGTGACCATAGCAT+CGG - chr5_1:29998485-29998504 None:intergenic 40.0%
AACTTCAGACAAAGCTTCTG+AGG + chr5_1:29998543-29998562 Msa0727510:CDS 40.0%
!!! AGCTACTTTTTCAGTTTGGC+CGG - chr5_1:29998821-29998840 None:intergenic 40.0%
GAAAAAGTAGCTTCTACGAC+AGG + chr5_1:29998829-29998848 Msa0727510:three_prime_UTR 40.0%
AGCCATTGTTGAATGGTGAG+AGG - chr5_1:29995985-29996004 None:intergenic 45.0%
! TTTGAGAAGTGCGGTTGGTT+TGG - chr5_1:29996015-29996034 None:intergenic 45.0%
! TCATCTTTGAGAAGTGCGGT+TGG - chr5_1:29996020-29996039 None:intergenic 45.0%
GATTCTGCTTGTCGTTGCTT+TGG + chr5_1:29996245-29996264 Msa0727510:CDS 45.0%
TCCACCTTGAACAGGAATCA+AGG - chr5_1:29996741-29996760 None:intergenic 45.0%
!! TTGCTTTTGGAGGCCTTTTG+TGG + chr5_1:29996979-29996998 Msa0727510:intron 45.0%
CATTGATCTCATGGCCAGTT+GGG - chr5_1:29997253-29997272 None:intergenic 45.0%
! GCTCAAGTGCATTGATCTCA+TGG - chr5_1:29997262-29997281 None:intergenic 45.0%
!! AAAATGGAGTGGATGGACTG+AGG - chr5_1:29997301-29997320 None:intergenic 45.0%
AAATCGGCACCGTCTCTATA+TGG - chr5_1:29997344-29997363 None:intergenic 45.0%
!! GAAGACTGAAAGGGTATCCA+CGG - chr5_1:29997370-29997389 None:intergenic 45.0%
TACCCTTTCAGTCTTCGTGA+AGG + chr5_1:29997374-29997393 Msa0727510:CDS 45.0%
CACCTTCACGAAGACTGAAA+GGG - chr5_1:29997379-29997398 None:intergenic 45.0%
ACACCTTCACGAAGACTGAA+AGG - chr5_1:29997380-29997399 None:intergenic 45.0%
ACACCTAGTGTTCCTCTCAT+GGG - chr5_1:29997474-29997493 None:intergenic 45.0%
GAACAGTGTTCCCTTAGGAA+TGG - chr5_1:29997603-29997622 None:intergenic 45.0%
ATCGGACCTGCAATGTACTT+CGG + chr5_1:29997662-29997681 Msa0727510:CDS 45.0%
ATGAGTCCGAAGTACATTGC+AGG - chr5_1:29997671-29997690 None:intergenic 45.0%
TGCAATGTACTTCGGACTCA+TGG + chr5_1:29997670-29997689 Msa0727510:CDS 45.0%
GCAATGTACTTCGGACTCAT+GGG + chr5_1:29997671-29997690 Msa0727510:CDS 45.0%
! ATCTGTGACCATTTGGGACT+TGG + chr5_1:29998235-29998254 Msa0727510:CDS 45.0%
TCTTCACTCCAAGTCCCAAA+TGG - chr5_1:29998246-29998265 None:intergenic 45.0%
! GCTTTGCTGTGCCATATGTA+TGG - chr5_1:29998277-29998296 None:intergenic 45.0%
AGGGTTGCAGCTTGGAAAAA+TGG - chr5_1:29998364-29998383 None:intergenic 45.0%
!! CTTTTGAAAGGGTTGCAGCT+TGG - chr5_1:29998372-29998391 None:intergenic 45.0%
CTACATTGAACTCTCCAAGC+AGG + chr5_1:29998414-29998433 Msa0727510:CDS 45.0%
AAGCAGGTCAAGGAGAAACT+CGG + chr5_1:29998430-29998449 Msa0727510:CDS 45.0%
TGGTCACTTGGATTGAAGCT+TGG + chr5_1:29998491-29998510 Msa0727510:CDS 45.0%
GGTCACTTGGATTGAAGCTT+GGG + chr5_1:29998492-29998511 Msa0727510:CDS 45.0%
GACAGGCCCACAATACAATA+AGG - chr5_1:29998772-29998791 None:intergenic 45.0%
TATTGTATTGTGGGCCTGTC+CGG + chr5_1:29998772-29998791 Msa0727510:three_prime_UTR 45.0%
AGCTTCTACGACAGGACAAT+CGG + chr5_1:29998837-29998856 Msa0727510:three_prime_UTR 45.0%
AATCGAGGTTGCGGATGGTT+GGG - chr5_1:29996058-29996077 None:intergenic 50.0%
AAATCGAGGTTGCGGATGGT+TGG - chr5_1:29996059-29996078 None:intergenic 50.0%
TCTCGAGGAAATCGAGGTTG+CGG - chr5_1:29996067-29996086 None:intergenic 50.0%
ACCTCGATTTCCTCGAGATG+TGG + chr5_1:29996069-29996088 Msa0727510:CDS 50.0%
TCCACATCTCGAGGAAATCG+AGG - chr5_1:29996073-29996092 None:intergenic 50.0%
AAAAGGGTCTCCACATCTCG+AGG - chr5_1:29996082-29996101 None:intergenic 50.0%
GCCTTGATTCCTGTTCAAGG+TGG + chr5_1:29996737-29996756 Msa0727510:intron 50.0%
CAGGTTGCTAAAGACCCAAC+TGG + chr5_1:29997236-29997255 Msa0727510:intron 50.0%
! GCATTGATCTCATGGCCAGT+TGG - chr5_1:29997254-29997273 None:intergenic 50.0%
! AGGGTATCCACGGACGAAAT+CGG - chr5_1:29997360-29997379 None:intergenic 50.0%
GAGCCAAAGACCGTGAGAAA+CGG - chr5_1:29997411-29997430 None:intergenic 50.0%
CACCTAGTGTTCCTCTCATG+GGG - chr5_1:29997473-29997492 None:intergenic 50.0%
CACACCTAGTGTTCCTCTCA+TGG - chr5_1:29997475-29997494 None:intergenic 50.0%
ATGGGGAACAGTGTTCCCTT+AGG - chr5_1:29997608-29997627 None:intergenic 50.0%
CCAGATTCATACCGCACATG+GGG - chr5_1:29997625-29997644 None:intergenic 50.0%
GCCAGATTCATACCGCACAT+GGG - chr5_1:29997626-29997645 None:intergenic 50.0%
TACTTCGGACTCATGGGTGA+TGG + chr5_1:29997677-29997696 Msa0727510:CDS 50.0%
! ATGGGTGATGGTCAGCCTAT+TGG + chr5_1:29997689-29997708 Msa0727510:CDS 50.0%
CGTTACGATGATATGTGGGC+TGG + chr5_1:29997713-29997732 Msa0727510:CDS 50.0%
TTGGGACTTGGAGTGAAGAC+CGG + chr5_1:29998247-29998266 Msa0727510:CDS 50.0%
AGACCGGACTCCCATACATA+TGG + chr5_1:29998263-29998282 Msa0727510:CDS 50.0%
GTGCCATATGTATGGGAGTC+CGG - chr5_1:29998269-29998288 None:intergenic 50.0%
TGAACTCTCCAAGCAGGTCA+AGG + chr5_1:29998420-29998439 Msa0727510:CDS 50.0%
GAGTTTCTCCTTGACCTGCT+TGG - chr5_1:29998431-29998450 None:intergenic 50.0%
CGTCAAACTAGCCGATGCTA+TGG + chr5_1:29998471-29998490 Msa0727510:CDS 50.0%
TAGCCGATGCTATGGTCACT+TGG + chr5_1:29998479-29998498 Msa0727510:CDS 50.0%
!! TCAGACAAAGCTTCTGAGGC+TGG + chr5_1:29998547-29998566 Msa0727510:CDS 50.0%
GCTTCTACGACAGGACAATC+GGG + chr5_1:29998838-29998857 Msa0727510:three_prime_UTR 50.0%
GAGGAAATCGAGGTTGCGGA+TGG - chr5_1:29996063-29996082 None:intergenic 55.0%
! GTTCCCACTGCCGTTTCTCA+CGG + chr5_1:29997398-29997417 Msa0727510:CDS 55.0%
AGACCGTGAGAAACGGCAGT+GGG - chr5_1:29997404-29997423 None:intergenic 55.0%
AAGACCGTGAGAAACGGCAG+TGG - chr5_1:29997405-29997424 None:intergenic 55.0%
! CTGCCGTTTCTCACGGTCTT+TGG + chr5_1:29997405-29997424 Msa0727510:CDS 55.0%
TGGGGCTTGACAAGCTGTGT+TGG - chr5_1:29997455-29997474 None:intergenic 55.0%
AGCTTGTCAAGCCCCATGAG+AGG + chr5_1:29997459-29997478 Msa0727510:CDS 55.0%
AGCCCCATGAGAGGAACACT+AGG + chr5_1:29997468-29997487 Msa0727510:CDS 55.0%
GGAACACTGTTCCCCATGTG+CGG + chr5_1:29997611-29997630 Msa0727510:CDS 55.0%
CCCCATGTGCGGTATGAATC+TGG + chr5_1:29997622-29997641 Msa0727510:CDS 55.0%
GGCCAGATTCATACCGCACA+TGG - chr5_1:29997627-29997646 None:intergenic 55.0%
TTGCAGGTCCGATCAGCTCA+CGG - chr5_1:29997655-29997674 None:intergenic 55.0%
!! ACGATGATATGTGGGCTGGC+TGG + chr5_1:29997717-29997736 Msa0727510:CDS 55.0%
GCCTTCGACCGTGAGCTGAT+CGG + chr5_1:29997644-29997663 Msa0727510:CDS 60.0%
TCCGATCAGCTCACGGTCGA+AGG - chr5_1:29997648-29997667 None:intergenic 60.0%
!! GTGGGCTGGCTGGTGCATAA+AGG + chr5_1:29997727-29997746 Msa0727510:CDS 60.0%
TATTGTGGGCCTGTCCGGTC+TGG + chr5_1:29998777-29998796 Msa0727510:three_prime_UTR 60.0%
ATTGTGGGCCTGTCCGGTCT+GGG + chr5_1:29998778-29998797 Msa0727510:three_prime_UTR 60.0%
ACTAGTCGTCTGGCCCAGAC+CGG - chr5_1:29998794-29998813 None:intergenic 60.0%
! GGCCAGACGACTAGTCAAGC+CGG + chr5_1:29998799-29998818 Msa0727510:three_prime_UTR 60.0%
!! GACGGTGCCGATTTCGTCCG+TGG + chr5_1:29997350-29997369 Msa0727510:CDS 65.0%
!! GGCCGGCTTGACTAGTCGTC+TGG - chr5_1:29998804-29998823 None:intergenic 65.0%
TCGTCTGGCCCAGACCGGAC+AGG - chr5_1:29998789-29998808 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 29995815 29998977 29995815 ID=Msa0727510;Name=Msa0727510
chr5_1 mRNA 29995815 29998977 29995815 ID=Msa0727510-mRNA-1;Parent=Msa0727510;Name=Msa0727510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=151|1|1|1|0.75|0.6|5|398|362
chr5_1 exon 29995815 29995959 29995815 ID=Msa0727510-mRNA-1:exon:10188;Parent=Msa0727510-mRNA-1
chr5_1 exon 29995993 29996319 29995993 ID=Msa0727510-mRNA-1:exon:10189;Parent=Msa0727510-mRNA-1
chr5_1 exon 29997239 29997489 29997239 ID=Msa0727510-mRNA-1:exon:10190;Parent=Msa0727510-mRNA-1
chr5_1 exon 29997580 29997748 29997580 ID=Msa0727510-mRNA-1:exon:10191;Parent=Msa0727510-mRNA-1
chr5_1 exon 29998232 29998977 29998232 ID=Msa0727510-mRNA-1:exon:10192;Parent=Msa0727510-mRNA-1
chr5_1 five_prime_UTR 29995815 29995959 29995815 ID=Msa0727510-mRNA-1:five_prime_utr;Parent=Msa0727510-mRNA-1
chr5_1 five_prime_UTR 29995993 29995998 29995993 ID=Msa0727510-mRNA-1:five_prime_utr;Parent=Msa0727510-mRNA-1
chr5_1 CDS 29995999 29996319 29995999 ID=Msa0727510-mRNA-1:cds;Parent=Msa0727510-mRNA-1
chr5_1 CDS 29997239 29997489 29997239 ID=Msa0727510-mRNA-1:cds;Parent=Msa0727510-mRNA-1
chr5_1 CDS 29997580 29997748 29997580 ID=Msa0727510-mRNA-1:cds;Parent=Msa0727510-mRNA-1
chr5_1 CDS 29998232 29998579 29998232 ID=Msa0727510-mRNA-1:cds;Parent=Msa0727510-mRNA-1
chr5_1 three_prime_UTR 29998580 29998977 29998580 ID=Msa0727510-mRNA-1:three_prime_utr;Parent=Msa0727510-mRNA-1
Gene Sequence

>Msa0727510

ATGGCTTCTTCATCCAAACCAACCGCACTTCTCAAAGATGAACTCGACATCGTGATCCCAACCATCCGCAACCTCGATTTCCTCGAGATGTGGAGACCCTTTTTCGAACAATATCATCTCATCATTGTTCAAGATGGTGACCCTTCAAAAGTCATCAAAGTTCCTGAAGGATTTGATTATGAGCTTTACAATCGTAATGATATCAATAGGATCTTGGGTCCTAAAGCTTCTTGTATCTCCTTTAAGGATTCTGCTTGTCGTTGCTTTGGTTATATGGTTTCTAAGAAGAAGTATATTTATACCATTGATGATGATTGCTTTGTTGCTAAAGACCCAACTGGCCATGAGATCAATGCACTTGAGCAGCACATTAAGAATCTCCTCAGTCCATCCACTCCATTTTTCTTCAACACCCTTTACGATCCATATAGAGACGGTGCCGATTTCGTCCGTGGATACCCTTTCAGTCTTCGTGAAGGTGTTCCCACTGCCGTTTCTCACGGTCTTTGGCTCAACATACCTGATTATGATGCTCCAACACAGCTTGTCAAGCCCCATGAGAGGAACACTAGGTTTGTTGATGCTGTTATGACCATTCCTAAGGGAACACTGTTCCCCATGTGCGGTATGAATCTGGCCTTCGACCGTGAGCTGATCGGACCTGCAATGTACTTCGGACTCATGGGTGATGGTCAGCCTATTGGACGTTACGATGATATGTGGGCTGGCTGGTGCATAAAGGTTATCTGTGACCATTTGGGACTTGGAGTGAAGACCGGACTCCCATACATATGGCACAGCAAAGCAAGTAACCCATTTGTGAATCTGAAAAAGGAGTACAAAGGTATCTTCTGGCAAGAAGAGATCATTCCATTTTTCCAAGCTGCAACCCTTTCAAAAGATTGCACCTCTGTTCAGAAATGCTACATTGAACTCTCCAAGCAGGTCAAGGAGAAACTCGGAACTATTGATCCCTATTTCGTCAAACTAGCCGATGCTATGGTCACTTGGATTGAAGCTTGGGATGAGATTAACAACTCAGCTGAAGTGAAAACTTCAGACAAAGCTTCTGAGGCTGGTCCCAAGTGA

Protein sequence

>Msa0727510

MASSSKPTALLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFVKLADAMVTWIEAWDEINNSAEVKTSDKASEAGPK*