AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0762930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762930 MtrunA17_Chr5g0413331 99.764 423 1 0 1 423 1 423 0.0 866
Msa0762930 MtrunA17_Chr2g0309471 91.726 423 35 0 1 423 1 423 0.0 801
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0762930 AT1G10670.4 88.180 423 50 0 1 423 1 423 0.0 781
Msa0762930 AT1G10670.2 88.180 423 50 0 1 423 1 423 0.0 781
Msa0762930 AT1G10670.1 88.180 423 50 0 1 423 1 423 0.0 781
Msa0762930 AT1G60810.2 87.234 423 54 0 1 423 1 423 0.0 776
Msa0762930 AT1G60810.1 87.234 423 54 0 1 423 1 423 0.0 776
Msa0762930 AT1G10670.3 84.199 443 50 1 1 423 1 443 0.0 767
Msa0762930 AT1G09430.1 81.862 419 76 0 1 419 1 419 0.0 736

Find 132 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCTTTGTTACAGGTTTA+TGG 0.135148 5_2:-21573922 Msa0762930:intron
GAGCACTTTAAGAGACTTTC+TGG 0.142923 5_2:-21578223 Msa0762930:CDS
GTGAAACCTGACATGTTATT+TGG 0.166150 5_2:-21577312 Msa0762930:CDS
ATGGCTTTCTTCTTCTAAAT+TGG 0.172223 5_2:-21577337 Msa0762930:CDS
TCCGCTTAACTATCCATTTC+AGG 0.197287 5_2:-21573844 Msa0762930:exon
TTTCCATCAACCAATGTAAA+AGG 0.245174 5_2:+21576364 None:intergenic
TTAATTTCCTTTCCCGTTCC+TGG 0.255198 5_2:-21573761 Msa0762930:three_prime_UTR
GCCACTGAGTCTTTCATTCA+TGG 0.261851 5_2:-21576126 Msa0762930:CDS
TGGTTTGGTTGCCTTGAATT+TGG 0.268556 5_2:-21577274 Msa0762930:CDS
TGAACCCAAAGGGCCGAATT+TGG 0.281078 5_2:-21575244 Msa0762930:CDS
TTTCAACCTTTACTTGTGTT+AGG 0.282819 5_2:+21578793 None:intergenic
CGAATTTGGACAATGGTTGC+TGG 0.300252 5_2:-21575230 Msa0762930:CDS
GAATCGATATTGAAGAGAAT+TGG 0.314663 5_2:-21576928 Msa0762930:CDS
ATTGAAAATATAGGTTGAAA+TGG 0.324243 5_2:-21577074 Msa0762930:intron
TTCAATTAGCTAACCTCAAT+CGG 0.325607 5_2:+21574033 None:intergenic
GATCCAGGAATCAAAGTTAA+AGG 0.325987 5_2:-21574148 Msa0762930:intron
CGAGCACTTGGAGAGGAAAT+TGG 0.328982 5_2:-21574060 Msa0762930:CDS
GGTTGCCTTGAATTTGGATT+TGG 0.332415 5_2:-21577268 Msa0762930:CDS
TTGTCCAAATTCGGCCCTTT+GGG 0.337602 5_2:+21575240 None:intergenic
TTAATACAGGTAGGCGATCT+TGG 0.342068 5_2:-21575088 Msa0762930:intron
ATTGTCCAAATTCGGCCCTT+TGG 0.347305 5_2:+21575239 None:intergenic
AAGAAAGCATTAACCTGAAA+TGG 0.350004 5_2:+21573831 None:intergenic
GATGATGGCTAAGAACAATT+TGG 0.355324 5_2:+21578711 None:intergenic
ATACCAGTCATTGTTGCTTC+AGG 0.359407 5_2:+21573898 None:intergenic
CTGCAAAACCTCCTCTTCAT+TGG 0.362473 5_2:+21575021 None:intergenic
TGATGGAAAGCCTTATCCTT+TGG 0.370162 5_2:-21576350 Msa0762930:CDS
AAAGTTGAAAATATGGTAAT+AGG 0.371585 5_2:-21578773 Msa0762930:five_prime_UTR
CAGCAACCATTGTCCAAATT+CGG 0.373694 5_2:+21575231 None:intergenic
CTTACTTGTGCAGACTTGAT+AGG 0.377362 5_2:+21578190 None:intergenic
AAGGTTGAAAGTTGAAAATA+TGG 0.384202 5_2:-21578780 Msa0762930:five_prime_UTR
ACTTGTTGCAACCCTTCCCT+TGG 0.384681 5_2:-21576734 Msa0762930:CDS
CTTGGCTTTGCAAATGAGCT+TGG 0.386907 5_2:-21575070 Msa0762930:CDS
CAAGGAAATGATGAGGTTGT+TGG 0.390503 5_2:+21578679 None:intergenic
TTGAAAATATAGGTTGAAAT+GGG 0.391559 5_2:-21577073 Msa0762930:intron
AATCGATATTGAAGAGAATT+GGG 0.403789 5_2:-21576927 Msa0762930:CDS
CTTTCACAAATGAAGCAACT+TGG 0.406529 5_2:+21577244 None:intergenic
TAACTAAATTTACAAATTCC+AGG 0.417390 5_2:+21573743 None:intergenic
AGGTAATACTCTTCATTATG+TGG 0.426783 5_2:+21577004 None:intergenic
ATTGAATTTCCATTGCCATT+TGG 0.427635 5_2:-21576162 Msa0762930:CDS
TCAACAATGAAAGTTGTTAT+CGG 0.431360 5_2:+21577037 None:intergenic
TTCAACCTTTACTTGTGTTA+GGG 0.440620 5_2:+21578794 None:intergenic
TGAAACCTGACATGTTATTT+GGG 0.440993 5_2:-21577311 Msa0762930:CDS
AAGTTTGAAGTGAACGTTGA+TGG 0.443711 5_2:-21573791 Msa0762930:three_prime_UTR
AATTTACAAATTCCAGGAAC+GGG 0.450031 5_2:+21573749 None:intergenic
CGCTTCCCAAATAACATGTC+AGG 0.451633 5_2:+21577306 None:intergenic
ATAGATCAAGGGAGAAATTG+AGG 0.459317 5_2:-21576590 Msa0762930:intron
CATTCATGGATTAGATGAAA+AGG 0.460623 5_2:-21576112 Msa0762930:intron
TGTTGCAACCCTTCCCTTGG+AGG 0.460679 5_2:-21576731 Msa0762930:intron
TGGCATAATTCGGGCACTAA+AGG 0.461705 5_2:-21574259 Msa0762930:CDS
TGCAAAACCTCCTCTTCATT+GGG 0.463887 5_2:+21575022 None:intergenic
GAATTTGGACAATGGTTGCT+GGG 0.465292 5_2:-21575229 Msa0762930:CDS
TTTGGGAAGCGTGGTAAAAG+TGG 0.468444 5_2:-21577294 Msa0762930:CDS
AACCTCATCCATCCTCCTTC+CGG 0.471441 5_2:-21578540 Msa0762930:intron
GTGGATATGGAGAGAAGAAA+AGG 0.481837 5_2:+21573565 None:intergenic
TAAATTGAATTTACCTCCAA+GGG 0.486977 5_2:+21576718 None:intergenic
AATGACTGGTATATGCAAAC+AGG 0.488870 5_2:-21573887 Msa0762930:CDS
GGGAATTACCGGAAGGAGGA+TGG 0.489398 5_2:+21578532 None:intergenic
AATTTCCATTGCCATTTGGA+AGG 0.489649 5_2:-21576158 Msa0762930:CDS
CCTCTCATATCCAAAGGATA+AGG 0.491900 5_2:+21576340 None:intergenic
TGATTCTAAGAGATTGTTGA+AGG 0.494704 5_2:-21578245 Msa0762930:CDS
TGTTGGGTTGGTGAAGATGA+TGG 0.496535 5_2:+21578696 None:intergenic
ACTTACATCAATTACAACTC+TGG 0.505750 5_2:+21574994 None:intergenic
TTGGGCCAAATCCAAATTCA+AGG 0.506250 5_2:+21577263 None:intergenic
TTCACTGTGTTGAACCCAAA+GGG 0.510313 5_2:-21575254 Msa0762930:CDS
GGAAATTGGCATCCCGATTG+AGG 0.511227 5_2:-21574046 Msa0762930:intron
AATAGCCCTAACACAAGTAA+AGG 0.513847 5_2:-21578799 Msa0762930:five_prime_UTR
GTCTGTCAGAGACAATGTTA+AGG 0.515654 5_2:+21576984 None:intergenic
GGAAACTATGCAGAATATAG+TGG 0.517156 5_2:-21575049 Msa0762930:CDS
AAGGAAATGATGAGGTTGTT+GGG 0.517380 5_2:+21578680 None:intergenic
GAAGCGTGGTAAAAGTGGTT+TGG 0.519204 5_2:-21577289 Msa0762930:CDS
TCAATTAGCTAACCTCAATC+GGG 0.519937 5_2:+21574034 None:intergenic
TCTTCATTATGTGGGATGAA+AGG 0.519980 5_2:+21577013 None:intergenic
TTAAATTGAATTTACCTCCA+AGG 0.523717 5_2:+21576717 None:intergenic
TATTGAAGAGAATTGGGATA+AGG 0.523886 5_2:-21576921 Msa0762930:intron
TTGAATTTACCTCCAAGGGA+AGG 0.525190 5_2:+21576722 None:intergenic
AGGGAAGGGTTGCAACAAGT+GGG 0.528893 5_2:+21576737 None:intergenic
GGTTGAAATGGGTGGATGCA+AGG 0.529860 5_2:-21577062 Msa0762930:CDS
TTTCACAAATGAAGCAACTT+GGG 0.530236 5_2:+21577245 None:intergenic
GGTAATACTCTTCATTATGT+GGG 0.530693 5_2:+21577005 None:intergenic
AACATTGTCTCTGACAGACT+TGG 0.532898 5_2:-21576980 Msa0762930:CDS
GAAAGAGCGTCTTGGTAAAG+AGG 0.535308 5_2:-21577226 Msa0762930:intron
TGCACCTTTATGTGAGGCGA+GGG 0.535874 5_2:-21574116 Msa0762930:CDS
TGAATTTACCTCCAAGGGAA+GGG 0.537577 5_2:+21576723 None:intergenic
GGACCTGAAGCAACAATGAC+TGG 0.541528 5_2:-21573901 Msa0762930:CDS
AAGGGAAGGGTTGCAACAAG+TGG 0.542096 5_2:+21576736 None:intergenic
AGGGCTCTTGTTATAGGTGG+AGG 0.545602 5_2:-21574318 Msa0762930:CDS
TTGAAAATATGGTAATAGGT+AGG 0.549340 5_2:-21578769 Msa0762930:five_prime_UTR
AAAACAAAACAATGAACATG+TGG 0.549930 5_2:+21578742 None:intergenic
ACAAATTCCAGGAACGGGAA+AGG 0.550902 5_2:+21573754 None:intergenic
AAACAAAACAATGAACATGT+GGG 0.556297 5_2:+21578743 None:intergenic
GCACTCATAACCCTTCCAAA+TGG 0.556781 5_2:+21576147 None:intergenic
TACCGGAAGGAGGATGGATG+AGG 0.557016 5_2:+21578538 None:intergenic
ATTTCCATTGCCATTTGGAA+GGG 0.562037 5_2:-21576157 Msa0762930:CDS
GTTGAAATGGGTGGATGCAA+GGG 0.564098 5_2:-21577061 Msa0762930:CDS
TAGTGTCATCTACGCTGATA+CGG 0.565668 5_2:-21575198 Msa0762930:intron
AAATTTACAAATTCCAGGAA+CGG 0.566479 5_2:+21573748 None:intergenic
TCATTTGTGAAAGAGCGTCT+TGG 0.569120 5_2:-21577234 Msa0762930:CDS
AAATGATGAGGTTGTTGGGT+TGG 0.569363 5_2:+21578684 None:intergenic
AGAAATTGAGGAATTTCTCA+AGG 0.569980 5_2:-21576578 Msa0762930:CDS
GATGAGGTTGGTGCGATGAG+TGG 0.571889 5_2:+21578554 None:intergenic
GTTTGAAGAGAAAGAAAACA+AGG 0.583851 5_2:+21578661 None:intergenic
ATAACCCTTCCAAATGGCAA+TGG 0.584751 5_2:+21576153 None:intergenic
AAAAGGGCTCTTGTTATAGG+TGG 0.587346 5_2:-21574321 Msa0762930:CDS
AAAATATAGGTTGAAATGGG+TGG 0.588383 5_2:-21577070 Msa0762930:intron
ACCTGAAATGGATAGTTAAG+CGG 0.591889 5_2:+21573843 None:intergenic
CCTTATCCTTTGGATATGAG+AGG 0.593802 5_2:-21576340 Msa0762930:CDS
AAGAAAACAAGGAAATGATG+AGG 0.596363 5_2:+21578672 None:intergenic
TGTGCAACTGCCGACCCCGA+TGG 0.600634 5_2:-21574348 Msa0762930:CDS
AGCTCGCCTCTCATATCCAA+AGG 0.606308 5_2:+21576334 None:intergenic
ATCTGGGAATTACCGGAAGG+AGG 0.607069 5_2:+21578528 None:intergenic
GGGAAGGGTTGCAACAAGTG+GGG 0.607919 5_2:+21576738 None:intergenic
CTTTAAGAGACTTTCTGGCA+AGG 0.607933 5_2:-21578218 Msa0762930:CDS
AATTCGGGCACTAAAGGAGA+AGG 0.611871 5_2:-21574253 Msa0762930:intron
CACCTTTATGTGAGGCGAGG+GGG 0.612540 5_2:-21574114 Msa0762930:CDS
AATTTGGACAATGGTTGCTG+GGG 0.612808 5_2:-21575228 Msa0762930:CDS
TTTCACTGAGCTGCAAGACA+AGG 0.614695 5_2:-21577364 Msa0762930:CDS
TAGTGGTGCACCCAATGAAG+AGG 0.615153 5_2:-21575032 Msa0762930:CDS
ATGCACCTTTATGTGAGGCG+AGG 0.615319 5_2:-21574117 Msa0762930:CDS
AGCTGCAAGACAAGGAACAA+TGG 0.615951 5_2:-21577356 Msa0762930:CDS
AAAGGGCCGAATTTGGACAA+TGG 0.617352 5_2:-21575237 Msa0762930:CDS
GATGTAAGAGACACTCCCGT+TGG 0.624325 5_2:+21576772 None:intergenic
ATTTGGACAATGGTTGCTGG+GGG 0.626405 5_2:-21575227 Msa0762930:CDS
AGGTTGGTGCGATGAGTGGT+TGG 0.629722 5_2:+21578558 None:intergenic
GACATGTTATTTGGGAAGCG+TGG 0.630841 5_2:-21577303 Msa0762930:CDS
GGAAGGAGGATGGATGAGGT+TGG 0.631840 5_2:+21578542 None:intergenic
TGGTGCACCCAATGAAGAGG+AGG 0.642713 5_2:-21575029 Msa0762930:CDS
AACAAAACAATGAACATGTG+GGG 0.644913 5_2:+21578744 None:intergenic
CAAGAATGCACCTTTATGTG+AGG 0.651491 5_2:-21574122 Msa0762930:CDS
ATTCACTGTGTTGAACCCAA+AGG 0.654553 5_2:-21575255 Msa0762930:CDS
GCACCTTTATGTGAGGCGAG+GGG 0.663860 5_2:-21574115 Msa0762930:CDS
TTGCAGCTCAGTGAAATCAG+TGG 0.670844 5_2:+21577371 None:intergenic
TCCATGAATGAAAGACTCAG+TGG 0.707219 5_2:+21576125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATCTTTAAATTGAT+AGG + chr5_2:21577442-21577461 None:intergenic 10.0%
!! TCAATTTAAAGATTTAATTA+TGG - chr5_2:21577443-21577462 Msa0762930:intron 10.0%
!!! AATTTTAGATTAAGAAGAAA+TGG - chr5_2:21574090-21574109 Msa0762930:CDS 15.0%
!!! TTTTGTGATAAATTTTTAAG+TGG - chr5_2:21574313-21574332 Msa0762930:CDS 15.0%
!!! TTTATTTTGAACTTATCTTA+TGG + chr5_2:21574849-21574868 None:intergenic 15.0%
!! TTGAATAAAATTGTACATTT+AGG + chr5_2:21576313-21576332 None:intergenic 15.0%
!!! GCTATTTTTTAAATTATTAC+TGG - chr5_2:21576979-21576998 Msa0762930:CDS 15.0%
!! TGCTAAATATTAATTAATAC+AGG - chr5_2:21577279-21577298 Msa0762930:CDS 15.0%
!! AAATATTAATTAATACAGGT+AGG - chr5_2:21577283-21577302 Msa0762930:CDS 15.0%
!! AAAGTTGAAAATATGGTAAT+AGG - chr5_2:21573607-21573626 Msa0762930:three_prime_UTR 20.0%
!! ATTGAAAAATGAAAGAAAGT+GGG + chr5_2:21573878-21573897 None:intergenic 20.0%
!! AATTGAAAAATGAAAGAAAG+TGG + chr5_2:21573879-21573898 None:intergenic 20.0%
!! ATCAAAACTAAGATCAAAAT+TGG + chr5_2:21573933-21573952 None:intergenic 20.0%
!! ATAATATGCAATTTCATTCA+GGG + chr5_2:21574000-21574019 None:intergenic 20.0%
!! TATAATATGCAATTTCATTC+AGG + chr5_2:21574001-21574020 None:intergenic 20.0%
!!! TTCACGACAATTTTTTTAAA+TGG + chr5_2:21574457-21574476 None:intergenic 20.0%
!!! ATATCACTTTTACTTAAAGT+AGG - chr5_2:21574580-21574599 Msa0762930:intron 20.0%
!! ATAAGCTGAAAAATATCTTA+TGG - chr5_2:21574753-21574772 Msa0762930:intron 20.0%
!! TAAGCTGAAAAATATCTTAT+GGG - chr5_2:21574754-21574773 Msa0762930:intron 20.0%
!! AAATATATCAATGGTTGAAA+GGG + chr5_2:21575273-21575292 None:intergenic 20.0%
!! AAAATATATCAATGGTTGAA+AGG + chr5_2:21575274-21575293 None:intergenic 20.0%
!!! ATTGAAAATATAGGTTGAAA+TGG - chr5_2:21575306-21575325 Msa0762930:intron 20.0%
!!! TTGAAAATATAGGTTGAAAT+GGG - chr5_2:21575307-21575326 Msa0762930:intron 20.0%
!! TTGTTCGTAAAATAACAAAT+TGG + chr5_2:21575692-21575711 None:intergenic 20.0%
!! AATCTTAAAAGAAAACAGTA+CGG + chr5_2:21575932-21575951 None:intergenic 20.0%
!!! AATGTTATGTGTTATTTTGA+AGG - chr5_2:21576119-21576138 Msa0762930:CDS 20.0%
!! AAGGTAAACTAATATAACTT+TGG - chr5_2:21576287-21576306 Msa0762930:intron 20.0%
!! ACAAAAAATATGTACTTAAC+AGG + chr5_2:21576375-21576394 None:intergenic 20.0%
!!! TGTTTTTTTAACTTCTTACT+TGG - chr5_2:21576392-21576411 Msa0762930:CDS 20.0%
!!! GTTTTTTTAACTTCTTACTT+GGG - chr5_2:21576393-21576412 Msa0762930:CDS 20.0%
!!! TTTTTTTAACTTCTTACTTG+GGG - chr5_2:21576394-21576413 Msa0762930:CDS 20.0%
!!! TTTCATTGTCTTCATTTTAT+GGG + chr5_2:21576574-21576593 None:intergenic 20.0%
!!! ATCTTTTGCCAATAATTTAT+TGG - chr5_2:21577700-21577719 Msa0762930:intron 20.0%
!! AAATTGGTCCAATAAATTAT+TGG + chr5_2:21577711-21577730 None:intergenic 20.0%
!! GTGTTATAAGTTAGTTAATT+TGG + chr5_2:21577759-21577778 None:intergenic 20.0%
!!! TTTGTAATTTTGGTTAATTC+AGG - chr5_2:21577832-21577851 Msa0762930:intron 20.0%
!!! TTGTAATTTTGGTTAATTCA+GGG - chr5_2:21577833-21577852 Msa0762930:intron 20.0%
!! TTGTTCAATACTGTAAATAA+AGG + chr5_2:21578380-21578399 None:intergenic 20.0%
!!! AGCAGTTTATTAATTCTTTT+TGG - chr5_2:21578435-21578454 Msa0762930:intron 20.0%
!! TAACTAAATTTACAAATTCC+AGG + chr5_2:21578640-21578659 None:intergenic 20.0%
! AAGGTTGAAAGTTGAAAATA+TGG - chr5_2:21573600-21573619 Msa0762930:three_prime_UTR 25.0%
! TTGAAAATATGGTAATAGGT+AGG - chr5_2:21573611-21573630 Msa0762930:three_prime_UTR 25.0%
! AAACAAAACAATGAACATGT+GGG + chr5_2:21573640-21573659 None:intergenic 25.0%
! AAAACAAAACAATGAACATG+TGG + chr5_2:21573641-21573660 None:intergenic 25.0%
!! CCATTTCAAATTAGCTTAAT+GGG + chr5_2:21573958-21573977 None:intergenic 25.0%
!! CCATTAAGCTAATTTGAAAT+GGG - chr5_2:21573956-21573975 Msa0762930:intron 25.0%
! TTGCATATTATATAGTAGTG+AGG - chr5_2:21574009-21574028 Msa0762930:intron 25.0%
! GTTAATTATGTCCGAATTTA+TGG - chr5_2:21574357-21574376 Msa0762930:intron 25.0%
!!! GCTTATTGATTTCTGAAAAA+TGG + chr5_2:21574901-21574920 None:intergenic 25.0%
!!! CTTGAGTATTGAATTTGTTT+TGG - chr5_2:21574963-21574982 Msa0762930:intron 25.0%
! AATGTAAGACAATGAATGTA+AGG + chr5_2:21575218-21575237 None:intergenic 25.0%
! ACGTGACTAAAATATATCAA+TGG + chr5_2:21575282-21575301 None:intergenic 25.0%
! CACGTGTTTATTGAAAATAT+AGG - chr5_2:21575297-21575316 Msa0762930:intron 25.0%
! TCAACAATGAAAGTTGTTAT+CGG + chr5_2:21575346-21575365 None:intergenic 25.0%
! AATCGATATTGAAGAGAATT+GGG - chr5_2:21575453-21575472 Msa0762930:intron 25.0%
!! TAAGAGAAAATTTTATGTGC+AGG + chr5_2:21575532-21575551 None:intergenic 25.0%
! ATTATCCATAACCTTCAAAT+TGG - chr5_2:21575551-21575570 Msa0762930:intron 25.0%
!!! TAAGACTGTTTTTATTCCAA+CGG - chr5_2:21575592-21575611 Msa0762930:intron 25.0%
! TAAATTGAATTTACCTCCAA+GGG + chr5_2:21575665-21575684 None:intergenic 25.0%
! TTAAATTGAATTTACCTCCA+AGG + chr5_2:21575666-21575685 None:intergenic 25.0%
!! TTTTACGAACAAACTAACTT+TGG - chr5_2:21575700-21575719 Msa0762930:intron 25.0%
! TCTTGTTAGTTCATACTAAT+GGG - chr5_2:21576144-21576163 Msa0762930:CDS 25.0%
!!! TTTTTTAACTTCTTACTTGG+GGG - chr5_2:21576395-21576414 Msa0762930:CDS 25.0%
!! GTGTAATTTAAAATGTTGCA+AGG - chr5_2:21576456-21576475 Msa0762930:intron 25.0%
!! GTTTCATTGTCTTCATTTTA+TGG + chr5_2:21576575-21576594 None:intergenic 25.0%
! ACAGAGAATGAAATGATAAT+CGG - chr5_2:21576649-21576668 Msa0762930:intron 25.0%
!! TGATGTCTCTAAAAAACTAT+AGG - chr5_2:21577493-21577512 Msa0762930:intron 25.0%
!! GTAGGAGTAAACAATAATTT+TGG - chr5_2:21577601-21577620 Msa0762930:intron 25.0%
!! AATAGAGTAAACACTCATTT+TGG + chr5_2:21577895-21577914 None:intergenic 25.0%
!! TACAGTATTGAACAATCAAA+TGG - chr5_2:21578385-21578404 Msa0762930:intron 25.0%
!! TTTTTGGATATCTTTGTTAC+AGG - chr5_2:21578451-21578470 Msa0762930:intron 25.0%
! ATATCTTTGTTACAGGTTTA+TGG - chr5_2:21578458-21578477 Msa0762930:intron 25.0%
! AAATTTACAAATTCCAGGAA+CGG + chr5_2:21578635-21578654 None:intergenic 25.0%
!! TCAGTTTTTGTAGAATTTGA+TGG - chr5_2:21578714-21578733 Msa0762930:five_prime_UTR 25.0%
TTCAACCTTTACTTGTGTTA+GGG + chr5_2:21573589-21573608 None:intergenic 30.0%
TTTCAACCTTTACTTGTGTT+AGG + chr5_2:21573590-21573609 None:intergenic 30.0%
AACAAAACAATGAACATGTG+GGG + chr5_2:21573639-21573658 None:intergenic 30.0%
AAGAAAACAAGGAAATGATG+AGG + chr5_2:21573711-21573730 None:intergenic 30.0%
GTTTGAAGAGAAAGAAAACA+AGG + chr5_2:21573722-21573741 None:intergenic 30.0%
CCCATTAAGCTAATTTGAAA+TGG - chr5_2:21573955-21573974 Msa0762930:intron 30.0%
! CCCATTTCAAATTAGCTTAA+TGG + chr5_2:21573959-21573978 None:intergenic 30.0%
! TGATTCTAAGAGATTGTTGA+AGG - chr5_2:21574135-21574154 Msa0762930:CDS 30.0%
TTATGTCCGAATTTATGGTT+AGG - chr5_2:21574362-21574381 Msa0762930:intron 30.0%
TATGTCCGAATTTATGGTTA+GGG - chr5_2:21574363-21574382 Msa0762930:intron 30.0%
ATCTTCCCTAACCATAAATT+CGG + chr5_2:21574371-21574390 None:intergenic 30.0%
GTAGAAAGAACACAATTGAT+TGG - chr5_2:21574495-21574514 Msa0762930:intron 30.0%
AGCATATTAAGCACAATGTA+TGG + chr5_2:21574808-21574827 None:intergenic 30.0%
CGTGTATGCAAGTTTAATAA+AGG - chr5_2:21574874-21574893 Msa0762930:intron 30.0%
!!! TTGTTTTGGTTTGTGCTTTA+AGG - chr5_2:21574977-21574996 Msa0762930:intron 30.0%
ATGGCTTTCTTCTTCTAAAT+TGG - chr5_2:21575043-21575062 Msa0762930:CDS 30.0%
! TGAAACCTGACATGTTATTT+GGG - chr5_2:21575069-21575088 Msa0762930:CDS 30.0%
TTTCACAAATGAAGCAACTT+GGG + chr5_2:21575138-21575157 None:intergenic 30.0%
ACAATGAATGTAAGGTTTGA+AGG + chr5_2:21575210-21575229 None:intergenic 30.0%
! AAAATATAGGTTGAAATGGG+TGG - chr5_2:21575310-21575329 Msa0762930:intron 30.0%
GGTAATACTCTTCATTATGT+GGG + chr5_2:21575378-21575397 None:intergenic 30.0%
AGGTAATACTCTTCATTATG+TGG + chr5_2:21575379-21575398 None:intergenic 30.0%
GAATCGATATTGAAGAGAAT+TGG - chr5_2:21575452-21575471 Msa0762930:intron 30.0%
TATTGAAGAGAATTGGGATA+AGG - chr5_2:21575459-21575478 Msa0762930:intron 30.0%
! AAGATGAAAAGTATGTGTTG+TGG + chr5_2:21575487-21575506 None:intergenic 30.0%
TTTATGTGCAGGAAATAGAT+GGG + chr5_2:21575521-21575540 None:intergenic 30.0%
! TTTTATGTGCAGGAAATAGA+TGG + chr5_2:21575522-21575541 None:intergenic 30.0%
ATATGACCAAACCAATTTGA+AGG + chr5_2:21575565-21575584 None:intergenic 30.0%
!! AATTGGTTTGGTCATATTTC+AGG - chr5_2:21575568-21575587 Msa0762930:intron 30.0%
!!! AAGACTGTTTTTATTCCAAC+GGG - chr5_2:21575593-21575612 Msa0762930:intron 30.0%
!!! TGCACTGTTTTTATAGATCA+AGG - chr5_2:21575778-21575797 Msa0762930:intron 30.0%
!!! GCACTGTTTTTATAGATCAA+GGG - chr5_2:21575779-21575798 Msa0762930:intron 30.0%
AGAAATTGAGGAATTTCTCA+AGG - chr5_2:21575802-21575821 Msa0762930:intron 30.0%
!! GTGATTTTCACTCTTTTTCA+AGG - chr5_2:21575824-21575843 Msa0762930:intron 30.0%
! AGAGATGAATCCTTTTACAT+TGG - chr5_2:21576006-21576025 Msa0762930:intron 30.0%
!! AATCCTTTTACATTGGTTGA+TGG - chr5_2:21576013-21576032 Msa0762930:intron 30.0%
TTTCCATCAACCAATGTAAA+AGG + chr5_2:21576019-21576038 None:intergenic 30.0%
TTTCAAGAACTTCAAGAAGT+AGG - chr5_2:21576084-21576103 Msa0762930:intron 30.0%
! GTCTTGTTAGTTCATACTAA+TGG - chr5_2:21576143-21576162 Msa0762930:CDS 30.0%
ATTGAATTTCCATTGCCATT+TGG - chr5_2:21576218-21576237 Msa0762930:intron 30.0%
!! CATTCATGGATTAGATGAAA+AGG - chr5_2:21576268-21576287 Msa0762930:intron 30.0%
TTCACAAGTTATGAAACTGA+TGG - chr5_2:21576546-21576565 Msa0762930:intron 30.0%
!! AGTTTGTTAGCAAATGTGTT+AGG + chr5_2:21576716-21576735 None:intergenic 30.0%
TAACATATCCTAGAAGAAAG+TGG + chr5_2:21576848-21576867 None:intergenic 30.0%
!! ACTTTCTTCTAGGATATGTT+AGG - chr5_2:21576847-21576866 Msa0762930:intron 30.0%
TTGAATGCAACTACATGTTT+GGG + chr5_2:21576954-21576973 None:intergenic 30.0%
ATTGAATGCAACTACATGTT+TGG + chr5_2:21576955-21576974 None:intergenic 30.0%
TCATCAATAAGCCATTGATA+CGG + chr5_2:21577014-21577033 None:intergenic 30.0%
ACTTACATCAATTACAACTC+TGG + chr5_2:21577389-21577408 None:intergenic 30.0%
! TTGTTGTTGTTGTATTCTGT+AGG - chr5_2:21577583-21577602 Msa0762930:intron 30.0%
!!! TCAAGGGTGTTTATGTATTT+TGG + chr5_2:21577676-21577695 None:intergenic 30.0%
TTGGCAAAAGATATACTCAA+GGG + chr5_2:21577692-21577711 None:intergenic 30.0%
ATTGGCAAAAGATATACTCA+AGG + chr5_2:21577693-21577712 None:intergenic 30.0%
TATTGGACCAATTTGACTAA+TGG - chr5_2:21577717-21577736 Msa0762930:intron 30.0%
TTGAATATGTCCATTGTAGT+AGG + chr5_2:21577796-21577815 None:intergenic 30.0%
TACTACAATGGACATATTCA+AGG - chr5_2:21577795-21577814 Msa0762930:intron 30.0%
TCATTTGACATACGTATTCA+AGG - chr5_2:21577868-21577887 Msa0762930:intron 30.0%
!! CTACTTTTAGTGGCATAATT+CGG - chr5_2:21578111-21578130 Msa0762930:intron 30.0%
! TACTTTTAGTGGCATAATTC+GGG - chr5_2:21578112-21578131 Msa0762930:intron 30.0%
AAGTAAAACTCTACTGTTGT+GGG + chr5_2:21578157-21578176 None:intergenic 30.0%
TAAGTAAAACTCTACTGTTG+TGG + chr5_2:21578158-21578177 None:intergenic 30.0%
! CTTTTAAACTATTGTGATCC+AGG - chr5_2:21578217-21578236 Msa0762930:CDS 30.0%
TTCAATTAGCTAACCTCAAT+CGG + chr5_2:21578350-21578369 None:intergenic 30.0%
AACAATCAAATGGTGCTTAA+TGG - chr5_2:21578395-21578414 Msa0762930:intron 30.0%
ACAATCAAATGGTGCTTAAT+GGG - chr5_2:21578396-21578415 Msa0762930:intron 30.0%
TAATGGGAAAAATTGTGTTG+AGG - chr5_2:21578412-21578431 Msa0762930:intron 30.0%
!! AAGAAAGCATTAACCTGAAA+TGG + chr5_2:21578552-21578571 None:intergenic 30.0%
AATTTACAAATTCCAGGAAC+GGG + chr5_2:21578634-21578653 None:intergenic 30.0%
! GACTTCATTTTGTAAACACA+CGG + chr5_2:21578665-21578684 None:intergenic 30.0%
! ACATTTTCAACCACTCTTTT+TGG + chr5_2:21578690-21578709 None:intergenic 30.0%
AATAGCCCTAACACAAGTAA+AGG - chr5_2:21573581-21573600 Msa0762930:three_prime_UTR 35.0%
! GATGATGGCTAAGAACAATT+TGG + chr5_2:21573672-21573691 None:intergenic 35.0%
AAGGAAATGATGAGGTTGTT+GGG + chr5_2:21573703-21573722 None:intergenic 35.0%
!!! ACGATGTTAGTTTTGTGTGA+TGG + chr5_2:21573784-21573803 None:intergenic 35.0%
AATGAAAGAAAGTGGGATCT+GGG + chr5_2:21573871-21573890 None:intergenic 35.0%
AAATGAAAGAAAGTGGGATC+TGG + chr5_2:21573872-21573891 None:intergenic 35.0%
GTTAGTGCAGTTCAAATATG+TGG - chr5_2:21574335-21574354 Msa0762930:CDS 35.0%
!! TGGTTTGTGCTTTAAGGTTA+CGG - chr5_2:21574983-21575002 Msa0762930:intron 35.0%
GTGAAACCTGACATGTTATT+TGG - chr5_2:21575068-21575087 Msa0762930:CDS 35.0%
CTTTCACAAATGAAGCAACT+TGG + chr5_2:21575139-21575158 None:intergenic 35.0%
TGAATGTAAGGTTTGAAGGA+CGG + chr5_2:21575206-21575225 None:intergenic 35.0%
TCTTCATTATGTGGGATGAA+AGG + chr5_2:21575370-21575389 None:intergenic 35.0%
! AGCATAAGCTTTTCAGAATG+TGG - chr5_2:21575427-21575446 Msa0762930:intron 35.0%
! ATAAGCTTTTCAGAATGTGG+AGG - chr5_2:21575430-21575449 Msa0762930:intron 35.0%
TTATGTGCAGGAAATAGATG+GGG + chr5_2:21575520-21575539 None:intergenic 35.0%
CCAAACCAATTTGAAGGTTA+TGG + chr5_2:21575559-21575578 None:intergenic 35.0%
CCATAACCTTCAAATTGGTT+TGG - chr5_2:21575556-21575575 Msa0762930:intron 35.0%
ATAGATCAAGGGAGAAATTG+AGG - chr5_2:21575790-21575809 Msa0762930:intron 35.0%
AATGTATATTAACACGCCAC+TGG - chr5_2:21575862-21575881 Msa0762930:intron 35.0%
ATGTATATTAACACGCCACT+GGG - chr5_2:21575863-21575882 Msa0762930:intron 35.0%
!! CTTTACTTTTCTGTCAGATC+TGG - chr5_2:21575970-21575989 Msa0762930:intron 35.0%
! AATTTCCATTGCCATTTGGA+AGG - chr5_2:21576222-21576241 Msa0762930:intron 35.0%
! ATTTCCATTGCCATTTGGAA+GGG - chr5_2:21576223-21576242 Msa0762930:intron 35.0%
ATTACACCAGATTCCTCTAA+GGG + chr5_2:21576443-21576462 None:intergenic 35.0%
AATTACACCAGATTCCTCTA+AGG + chr5_2:21576444-21576463 None:intergenic 35.0%
AATTCAGAGAGTTCAGTTAC+AGG + chr5_2:21576784-21576803 None:intergenic 35.0%
AACTGAACTCTCTGAATTCT+AGG - chr5_2:21576786-21576805 Msa0762930:CDS 35.0%
ACTGAACTCTCTGAATTCTA+GGG - chr5_2:21576787-21576806 Msa0762930:CDS 35.0%
CCATATGAGAGAAAATGAGT+TGG + chr5_2:21576823-21576842 None:intergenic 35.0%
! CCAACTCATTTTCTCTCATA+TGG - chr5_2:21576820-21576839 Msa0762930:intron 35.0%
!! GAAGTATTGCTGTTTCTGAT+AGG + chr5_2:21576876-21576895 None:intergenic 35.0%
GGAAACTATGCAGAATATAG+TGG - chr5_2:21577331-21577350 Msa0762930:CDS 35.0%
GTGTCTTCCATTAGTCAAAT+TGG + chr5_2:21577727-21577746 None:intergenic 35.0%
ACTAATGGAAGACACATTCA+AGG - chr5_2:21577732-21577751 Msa0762930:intron 35.0%
TATGTCCATTGTAGTAGGTT+TGG + chr5_2:21577791-21577810 None:intergenic 35.0%
!!! CTATAACAAGAGCCCTTTTT+TGG + chr5_2:21578058-21578077 None:intergenic 35.0%
! CAAAAAAGGGCTCTTGTTAT+AGG - chr5_2:21578056-21578075 Msa0762930:intron 35.0%
GATCCAGGAATCAAAGTTAA+AGG - chr5_2:21578232-21578251 Msa0762930:CDS 35.0%
!!! GCATTTTTTCTAGACCCTTT+TGG + chr5_2:21578301-21578320 None:intergenic 35.0%
TCAATTAGCTAACCTCAATC+GGG + chr5_2:21578349-21578368 None:intergenic 35.0%
AATGACTGGTATATGCAAAC+AGG - chr5_2:21578493-21578512 Msa0762930:intron 35.0%
ACCTGAAATGGATAGTTAAG+CGG + chr5_2:21578540-21578559 None:intergenic 35.0%
! AAGTTTGAAGTGAACGTTGA+TGG - chr5_2:21578589-21578608 Msa0762930:five_prime_UTR 35.0%
ATGAAGTCATCCAAAAAGAG+TGG - chr5_2:21578677-21578696 Msa0762930:five_prime_UTR 35.0%
AAATGATGAGGTTGTTGGGT+TGG + chr5_2:21573699-21573718 None:intergenic 40.0%
CAAGGAAATGATGAGGTTGT+TGG + chr5_2:21573704-21573723 None:intergenic 40.0%
! GAGCACTTTAAGAGACTTTC+TGG - chr5_2:21574157-21574176 Msa0762930:intron 40.0%
! CTTTAAGAGACTTTCTGGCA+AGG - chr5_2:21574162-21574181 Msa0762930:intron 40.0%
CTTACTTGTGCAGACTTGAT+AGG + chr5_2:21574193-21574212 None:intergenic 40.0%
TATGGCATAAGCACTTGCAA+AGG + chr5_2:21574831-21574850 None:intergenic 40.0%
!! TGGTTTGGTTGCCTTGAATT+TGG - chr5_2:21575106-21575125 Msa0762930:intron 40.0%
GGTTGCCTTGAATTTGGATT+TGG - chr5_2:21575112-21575131 Msa0762930:intron 40.0%
TTGGGCCAAATCCAAATTCA+AGG + chr5_2:21575120-21575139 None:intergenic 40.0%
!! TCATTTGTGAAAGAGCGTCT+TGG - chr5_2:21575146-21575165 Msa0762930:intron 40.0%
GTCTGTCAGAGACAATGTTA+AGG + chr5_2:21575399-21575418 None:intergenic 40.0%
AACATTGTCTCTGACAGACT+TGG - chr5_2:21575400-21575419 Msa0762930:intron 40.0%
TGAATTTACCTCCAAGGGAA+GGG + chr5_2:21575660-21575679 None:intergenic 40.0%
TTGAATTTACCTCCAAGGGA+AGG + chr5_2:21575661-21575680 None:intergenic 40.0%
! TGATGGAAAGCCTTATCCTT+TGG - chr5_2:21576030-21576049 Msa0762930:intron 40.0%
CCTCTCATATCCAAAGGATA+AGG + chr5_2:21576043-21576062 None:intergenic 40.0%
CCTTATCCTTTGGATATGAG+AGG - chr5_2:21576040-21576059 Msa0762930:intron 40.0%
ATGAACAGACGTTGTCGTAT+TGG - chr5_2:21576179-21576198 Msa0762930:intron 40.0%
ATAACCCTTCCAAATGGCAA+TGG + chr5_2:21576230-21576249 None:intergenic 40.0%
TCCATGAATGAAAGACTCAG+TGG + chr5_2:21576258-21576277 None:intergenic 40.0%
TTACACCAGATTCCTCTAAG+GGG + chr5_2:21576442-21576461 None:intergenic 40.0%
GTTACAGGTTCGCTATATGA+AGG + chr5_2:21576769-21576788 None:intergenic 40.0%
ATATGGCTCCACTTTCTTCT+AGG - chr5_2:21576837-21576856 Msa0762930:intron 40.0%
ATTCACTGTGTTGAACCCAA+AGG - chr5_2:21577125-21577144 Msa0762930:intron 40.0%
TTCACTGTGTTGAACCCAAA+GGG - chr5_2:21577126-21577145 Msa0762930:intron 40.0%
CAGCAACCATTGTCCAAATT+CGG + chr5_2:21577152-21577171 None:intergenic 40.0%
GAATTTGGACAATGGTTGCT+GGG - chr5_2:21577151-21577170 Msa0762930:intron 40.0%
AATTTGGACAATGGTTGCTG+GGG - chr5_2:21577152-21577171 Msa0762930:intron 40.0%
TAGTGTCATCTACGCTGATA+CGG - chr5_2:21577182-21577201 Msa0762930:intron 40.0%
GTCACTTCATGCTGCAAATA+TGG + chr5_2:21577251-21577270 None:intergenic 40.0%
TTAATACAGGTAGGCGATCT+TGG - chr5_2:21577292-21577311 Msa0762930:CDS 40.0%
TGCAAAACCTCCTCTTCATT+GGG + chr5_2:21577361-21577380 None:intergenic 40.0%
! TATGGTGCTAACGTGAACAA+CGG - chr5_2:21577461-21577480 Msa0762930:intron 40.0%
TAGGTATTCTGCGAACACTA+TGG - chr5_2:21577512-21577531 Msa0762930:intron 40.0%
! AAAAGGGCTCTTGTTATAGG+TGG - chr5_2:21578059-21578078 Msa0762930:intron 40.0%
!!! GATGTTGCTGCTACTTTTAG+TGG - chr5_2:21578101-21578120 Msa0762930:intron 40.0%
! CTGCCTTTAACTTTGATTCC+TGG + chr5_2:21578238-21578257 None:intergenic 40.0%
CAAGAATGCACCTTTATGTG+AGG - chr5_2:21578258-21578277 Msa0762930:CDS 40.0%
!! TCTAGACCCTTTTGGTAGTT+CGG + chr5_2:21578293-21578312 None:intergenic 40.0%
CTAGAAAAAATGCGAGCACT+TGG - chr5_2:21578308-21578327 Msa0762930:intron 40.0%
! ATACCAGTCATTGTTGCTTC+AGG + chr5_2:21578485-21578504 None:intergenic 40.0%
TCCGCTTAACTATCCATTTC+AGG - chr5_2:21578536-21578555 Msa0762930:intron 40.0%
TTAATTTCCTTTCCCGTTCC+TGG - chr5_2:21578619-21578638 Msa0762930:five_prime_UTR 40.0%
!! TGTTGGGTTGGTGAAGATGA+TGG + chr5_2:21573687-21573706 None:intergenic 45.0%
AAGTGGGATCTGGGAATTAC+CGG + chr5_2:21573862-21573881 None:intergenic 45.0%
ATGCACGCTACAGTGAATCA+AGG + chr5_2:21574937-21574956 None:intergenic 45.0%
TTGCAGCTCAGTGAAATCAG+TGG + chr5_2:21575012-21575031 None:intergenic 45.0%
TTTCACTGAGCTGCAAGACA+AGG - chr5_2:21575016-21575035 Msa0762930:CDS 45.0%
AGCTGCAAGACAAGGAACAA+TGG - chr5_2:21575024-21575043 Msa0762930:CDS 45.0%
CGCTTCCCAAATAACATGTC+AGG + chr5_2:21575077-21575096 None:intergenic 45.0%
! GACATGTTATTTGGGAAGCG+TGG - chr5_2:21575077-21575096 Msa0762930:CDS 45.0%
! TTTGGGAAGCGTGGTAAAAG+TGG - chr5_2:21575086-21575105 Msa0762930:intron 45.0%
GAAGCGTGGTAAAAGTGGTT+TGG - chr5_2:21575091-21575110 Msa0762930:intron 45.0%
!! GAAAGAGCGTCTTGGTAAAG+AGG - chr5_2:21575154-21575173 Msa0762930:intron 45.0%
TGTAAGGTTTGAAGGACGGA+CGG + chr5_2:21575202-21575221 None:intergenic 45.0%
GTTGAAATGGGTGGATGCAA+GGG - chr5_2:21575319-21575338 Msa0762930:intron 45.0%
!! TTGTCGTATTGGTTGCAGGT+GGG - chr5_2:21576190-21576209 Msa0762930:intron 45.0%
GCACTCATAACCCTTCCAAA+TGG + chr5_2:21576236-21576255 None:intergenic 45.0%
GCCACTGAGTCTTTCATTCA+TGG - chr5_2:21576254-21576273 Msa0762930:intron 45.0%
! ACAGGCGCACACATATTTTC+TGG + chr5_2:21576357-21576376 None:intergenic 45.0%
! CTGTTTTGCCACCATTGTAG+AGG + chr5_2:21576633-21576652 None:intergenic 45.0%
GTTAGGAGAGAATGTCTCTC+TGG + chr5_2:21576699-21576718 None:intergenic 45.0%
GGAGTCTATGTCCGTATCAA+TGG - chr5_2:21577000-21577019 Msa0762930:CDS 45.0%
TTGTCCAAATTCGGCCCTTT+GGG + chr5_2:21577143-21577162 None:intergenic 45.0%
ATTGTCCAAATTCGGCCCTT+TGG + chr5_2:21577144-21577163 None:intergenic 45.0%
AAAGGGCCGAATTTGGACAA+TGG - chr5_2:21577143-21577162 Msa0762930:intron 45.0%
CGAATTTGGACAATGGTTGC+TGG - chr5_2:21577150-21577169 Msa0762930:intron 45.0%
ATTTGGACAATGGTTGCTGG+GGG - chr5_2:21577153-21577172 Msa0762930:intron 45.0%
!! CTTGGCTTTGCAAATGAGCT+TGG - chr5_2:21577310-21577329 Msa0762930:CDS 45.0%
CTGCAAAACCTCCTCTTCAT+TGG + chr5_2:21577362-21577381 None:intergenic 45.0%
! ATGGTGCTAACGTGAACAAC+GGG - chr5_2:21577462-21577481 Msa0762930:intron 45.0%
GAGAGCCAAACCTACTACAA+TGG - chr5_2:21577783-21577802 Msa0762930:intron 45.0%
GAGTAACAAGAGCCCTTTGT+CGG + chr5_2:21577974-21577993 None:intergenic 45.0%
!!! AAGAGCCCTTTTTTGGCCAT+CGG + chr5_2:21578051-21578070 None:intergenic 45.0%
TGGCATAATTCGGGCACTAA+AGG - chr5_2:21578121-21578140 Msa0762930:intron 45.0%
AATTCGGGCACTAAAGGAGA+AGG - chr5_2:21578127-21578146 Msa0762930:intron 45.0%
AAAAATGCGAGCACTTGGAG+AGG - chr5_2:21578313-21578332 Msa0762930:intron 45.0%
ACAAATTCCAGGAACGGGAA+AGG + chr5_2:21578629-21578648 None:intergenic 45.0%
!!! TTTTTTTTTTTTTGTAATTT+TGG - chr5_2:21577822-21577841 Msa0762930:intron 5.0%
AACCTCATCCATCCTCCTTC+CGG - chr5_2:21573840-21573859 Msa0762930:exon 50.0%
ATCTGGGAATTACCGGAAGG+AGG + chr5_2:21573855-21573874 None:intergenic 50.0%
!!! AGGTGTGCTTTTTCCCACTC+TGG - chr5_2:21575174-21575193 Msa0762930:intron 50.0%
GGTTGAAATGGGTGGATGCA+AGG - chr5_2:21575318-21575337 Msa0762930:intron 50.0%
GATGTAAGAGACACTCCCGT+TGG + chr5_2:21575611-21575630 None:intergenic 50.0%
AGGGAAGGGTTGCAACAAGT+GGG + chr5_2:21575646-21575665 None:intergenic 50.0%
AAGGGAAGGGTTGCAACAAG+TGG + chr5_2:21575647-21575666 None:intergenic 50.0%
! ACTTGTTGCAACCCTTCCCT+TGG - chr5_2:21575646-21575665 Msa0762930:intron 50.0%
GATTGCACAAGTACACCCAG+TGG + chr5_2:21575881-21575900 None:intergenic 50.0%
AGCTCGCCTCTCATATCCAA+AGG + chr5_2:21576049-21576068 None:intergenic 50.0%
!! GACGTTGTCGTATTGGTTGC+AGG - chr5_2:21576186-21576205 Msa0762930:intron 50.0%
!! GTTGTCGTATTGGTTGCAGG+TGG - chr5_2:21576189-21576208 Msa0762930:intron 50.0%
!! TGTCGTATTGGTTGCAGGTG+GGG - chr5_2:21576191-21576210 Msa0762930:intron 50.0%
! AGATTCCTCTAAGGGGTAGG+GGG + chr5_2:21576435-21576454 None:intergenic 50.0%
! CAGATTCCTCTAAGGGGTAG+GGG + chr5_2:21576436-21576455 None:intergenic 50.0%
! CCAGATTCCTCTAAGGGGTA+GGG + chr5_2:21576437-21576456 None:intergenic 50.0%
! ACCAGATTCCTCTAAGGGGT+AGG + chr5_2:21576438-21576457 None:intergenic 50.0%
CGAGCGTACAACCTCTACAA+TGG - chr5_2:21576619-21576638 Msa0762930:intron 50.0%
GCGTACAACCTCTACAATGG+TGG - chr5_2:21576622-21576641 Msa0762930:intron 50.0%
! TCTGGTAGGAGCTTAGCTCT+GGG + chr5_2:21576681-21576700 None:intergenic 50.0%
GGAGAGAATGTCTCTCTGGT+AGG + chr5_2:21576695-21576714 None:intergenic 50.0%
GTTCGCTATATGAAGGAGCG+AGG + chr5_2:21576762-21576781 None:intergenic 50.0%
TGTCTGACACCGACACATGT+CGG + chr5_2:21576921-21576940 None:intergenic 50.0%
!! ACATGTGTCGGTGTCAGACA+CGG - chr5_2:21576921-21576940 Msa0762930:intron 50.0%
TGAACCCAAAGGGCCGAATT+TGG - chr5_2:21577136-21577155 Msa0762930:intron 50.0%
TGTCATCTACGCTGATACGG+TGG - chr5_2:21577185-21577204 Msa0762930:intron 50.0%
GTCATCTACGCTGATACGGT+GGG - chr5_2:21577186-21577205 Msa0762930:intron 50.0%
TAGTGGTGCACCCAATGAAG+AGG - chr5_2:21577348-21577367 Msa0762930:CDS 50.0%
TGGTCCCTAAATGCGTGAAG+CGG - chr5_2:21577621-21577640 Msa0762930:intron 50.0%
ACACCCGCTTCACGCATTTA+GGG + chr5_2:21577628-21577647 None:intergenic 50.0%
!!! AGAGCCCTTTTTTGGCCATC+GGG + chr5_2:21578050-21578069 None:intergenic 50.0%
! AGGGCTCTTGTTATAGGTGG+AGG - chr5_2:21578062-21578081 Msa0762930:intron 50.0%
ATGCACCTTTATGTGAGGCG+AGG - chr5_2:21578263-21578282 Msa0762930:CDS 50.0%
TGCACCTTTATGTGAGGCGA+GGG - chr5_2:21578264-21578283 Msa0762930:CDS 50.0%
CGAGCACTTGGAGAGGAAAT+TGG - chr5_2:21578320-21578339 Msa0762930:intron 50.0%
GGAAATTGGCATCCCGATTG+AGG - chr5_2:21578334-21578353 Msa0762930:intron 50.0%
GGACCTGAAGCAACAATGAC+TGG - chr5_2:21578479-21578498 Msa0762930:intron 50.0%
!! AGGTTGGTGCGATGAGTGGT+TGG + chr5_2:21573825-21573844 None:intergenic 55.0%
!! GATGAGGTTGGTGCGATGAG+TGG + chr5_2:21573829-21573848 None:intergenic 55.0%
GGAAGGAGGATGGATGAGGT+TGG + chr5_2:21573841-21573860 None:intergenic 55.0%
TACCGGAAGGAGGATGGATG+AGG + chr5_2:21573845-21573864 None:intergenic 55.0%
GGGAATTACCGGAAGGAGGA+TGG + chr5_2:21573851-21573870 None:intergenic 55.0%
GGGATCTGGGAATTACCGGA+AGG + chr5_2:21573858-21573877 None:intergenic 55.0%
GGGAAGGGTTGCAACAAGTG+GGG + chr5_2:21575645-21575664 None:intergenic 55.0%
TGTTGCAACCCTTCCCTTGG+AGG - chr5_2:21575649-21575668 Msa0762930:intron 55.0%
GAATACCCCCTACCCCTTAG+AGG - chr5_2:21576427-21576446 Msa0762930:intron 55.0%
CCCTACCCCTTAGAGGAATC+TGG - chr5_2:21576434-21576453 Msa0762930:intron 55.0%
!! TAGGAGCTTAGCTCTGGGCA+GGG + chr5_2:21576676-21576695 None:intergenic 55.0%
CTCTGGTAGGAGCTTAGCTC+TGG + chr5_2:21576682-21576701 None:intergenic 55.0%
GCCTAGTGTCCGACATGTGT+CGG - chr5_2:21576909-21576928 Msa0762930:intron 55.0%
ACCGACACATGTCGGACACT+AGG + chr5_2:21576913-21576932 None:intergenic 55.0%
TGGTGCACCCAATGAAGAGG+AGG - chr5_2:21577351-21577370 Msa0762930:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_2:21577549-21577568 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_2:21577548-21577567 Msa0762930:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_2:21577549-21577568 Msa0762930:intron 55.0%
GGTCCCTAAATGCGTGAAGC+GGG - chr5_2:21577622-21577641 Msa0762930:intron 55.0%
GACACCCGCTTCACGCATTT+AGG + chr5_2:21577629-21577648 None:intergenic 55.0%
TCAGGGTCAGCAGTTGCACA+TGG + chr5_2:21577948-21577967 None:intergenic 55.0%
TGTGCAACTGCTGACCCTGA+TGG - chr5_2:21577948-21577967 Msa0762930:intron 55.0%
TGACCCTGATGGCCGACAAA+GGG - chr5_2:21577959-21577978 Msa0762930:intron 55.0%
!!! CCTTTTTTGGCCATCGGGGT+CGG + chr5_2:21578045-21578064 None:intergenic 55.0%
CGACCCCGATGGCCAAAAAA+GGG - chr5_2:21578043-21578062 Msa0762930:intron 55.0%
!!! GAGCCCTTTTTTGGCCATCG+GGG + chr5_2:21578049-21578068 None:intergenic 55.0%
GCACCTTTATGTGAGGCGAG+GGG - chr5_2:21578265-21578284 Msa0762930:CDS 55.0%
CACCTTTATGTGAGGCGAGG+GGG - chr5_2:21578266-21578285 Msa0762930:CDS 55.0%
AGGGGGTCCGAACTACCAAA+AGG - chr5_2:21578283-21578302 Msa0762930:exon 55.0%
GGGGGTCCGAACTACCAAAA+GGG - chr5_2:21578284-21578303 Msa0762930:exon 55.0%
!! AGGAGCTTAGCTCTGGGCAG+GGG + chr5_2:21576675-21576694 None:intergenic 60.0%
!! GTAGGAGCTTAGCTCTGGGC+AGG + chr5_2:21576677-21576696 None:intergenic 60.0%
TGGACAATGGTTGCTGGGGG+AGG - chr5_2:21577156-21577175 Msa0762930:intron 60.0%
CTGACCCTGATGGCCGACAA+AGG - chr5_2:21577958-21577977 Msa0762930:intron 60.0%
GAGCCCTTTGTCGGCCATCA+GGG + chr5_2:21577965-21577984 None:intergenic 60.0%
AGAGCCCTTTGTCGGCCATC+AGG + chr5_2:21577966-21577985 None:intergenic 60.0%
CCGACCCCGATGGCCAAAAA+AGG - chr5_2:21578042-21578061 Msa0762930:intron 60.0%
GACCCCCTCGCCTCACATAA+AGG + chr5_2:21578271-21578290 None:intergenic 60.0%
AGGACGGACGGAGCCAGAGT+GGG + chr5_2:21575190-21575209 None:intergenic 65.0%
AAGGACGGACGGAGCCAGAG+TGG + chr5_2:21575191-21575210 None:intergenic 65.0%
TGTGCAACTGCCGACCCCGA+TGG - chr5_2:21578032-21578051 Msa0762930:intron 65.0%
CGGGGTCGGCAGTTGCACAC+TGG + chr5_2:21578031-21578050 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 21573576 21578826 21573576 ID=Msa0762930;Name=Msa0762930
chr5_2 mRNA 21573576 21578826 21573576 ID=Msa0762930-mRNA-1;Parent=Msa0762930;Name=Msa0762930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=297|1|1|1|0.91|0.84|13|282|423
chr5_2 exon 21573576 21573929 21573576 ID=Msa0762930-mRNA-1:exon:8990;Parent=Msa0762930-mRNA-1
chr5_2 exon 21574047 21574163 21574047 ID=Msa0762930-mRNA-1:exon:8989;Parent=Msa0762930-mRNA-1
chr5_2 exon 21574254 21574370 21574254 ID=Msa0762930-mRNA-1:exon:8988;Parent=Msa0762930-mRNA-1
chr5_2 exon 21575000 21575101 21575000 ID=Msa0762930-mRNA-1:exon:8987;Parent=Msa0762930-mRNA-1
chr5_2 exon 21575199 21575294 21575199 ID=Msa0762930-mRNA-1:exon:8986;Parent=Msa0762930-mRNA-1
chr5_2 exon 21576113 21576194 21576113 ID=Msa0762930-mRNA-1:exon:8985;Parent=Msa0762930-mRNA-1
chr5_2 exon 21576301 21576415 21576301 ID=Msa0762930-mRNA-1:exon:8984;Parent=Msa0762930-mRNA-1
chr5_2 exon 21576557 21576608 21576557 ID=Msa0762930-mRNA-1:exon:8983;Parent=Msa0762930-mRNA-1
chr5_2 exon 21576732 21576812 21576732 ID=Msa0762930-mRNA-1:exon:8982;Parent=Msa0762930-mRNA-1
chr5_2 exon 21576922 21577083 21576922 ID=Msa0762930-mRNA-1:exon:8981;Parent=Msa0762930-mRNA-1
chr5_2 exon 21577227 21577403 21577227 ID=Msa0762930-mRNA-1:exon:8980;Parent=Msa0762930-mRNA-1
chr5_2 exon 21578195 21578304 21578195 ID=Msa0762930-mRNA-1:exon:8979;Parent=Msa0762930-mRNA-1
chr5_2 exon 21578541 21578826 21578541 ID=Msa0762930-mRNA-1:exon:8978;Parent=Msa0762930-mRNA-1
chr5_2 five_prime_UTR 21578541 21578826 21578541 ID=Msa0762930-mRNA-1:five_prime_utr;Parent=Msa0762930-mRNA-1
chr5_2 five_prime_UTR 21578294 21578304 21578294 ID=Msa0762930-mRNA-1:five_prime_utr;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21578195 21578293 21578195 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21577227 21577403 21577227 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21576922 21577083 21576922 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21576732 21576812 21576732 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21576557 21576608 21576557 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21576301 21576415 21576301 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21576113 21576194 21576113 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21575199 21575294 21575199 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21575000 21575101 21575000 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21574254 21574370 21574254 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21574047 21574163 21574047 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 CDS 21573858 21573929 21573858 ID=Msa0762930-mRNA-1:cds;Parent=Msa0762930-mRNA-1
chr5_2 three_prime_UTR 21573576 21573857 21573576 ID=Msa0762930-mRNA-1:three_prime_utr;Parent=Msa0762930-mRNA-1
Gene Sequence

>Msa0762930

ATGGCACGCAAGAAGATCAGAGAGTATGATTCTAAGAGATTGTTGAAGGAGCACTTTAAGAGACTTTCTGGCAAGGACTTACCTATCAAGTCTGCACAAGTTACGGAAGCCACTGATTTCACTGAGCTGCAAGACAAGGAACAATGGCTTTCTTCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGGAAGCGTGGTAAAAGTGGTTTGGTTGCCTTGAATTTGGATTTGGCCCAAGTTGCTTCATTTGTGAAAGAGCGTCTTGGTAAAGAGGTTGAAATGGGTGGATGCAAGGGACCGATAACAACTTTCATTGTTGAACCTTTCATCCCACATAATGAAGAGTATTACCTTAACATTGTCTCTGACAGACTTGGAAACAGCATAAGCTTTTCAGAATGTGGAGGAATCGATATTGAAGAGAATTGGGATAAGGTTAAGACTGTTTTTATTCCAACGGGAGTGTCTCTTACATCAGAAATCATCGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAATTTCTCAAGGTGATTTTCACTCTTTTTCAAGATCTGGATTTCACTTTCTTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAGTGGGGTAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTGCCACTGAGTCTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTCTAAAATTCACTGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTTGCTGGGGGAGGCGCTAGTGTCATCTACGCTGATACGGTAGGCGATCTTGGCTTTGCAAATGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAATGAAGAGGAGGTTTTGCAGTATGCCAGAGTTGTAATTGATTGTGCAACTGCCGACCCCGATGGCCAAAAAAGGGCTCTTGTTATAGGTGGAGGCATAGCTAACTTCACTGATGTTGCTGCTACTTTTAGTGGCATAATTCGGGCACTAAAGGAGAAGGAATCAAAGTTAAAGGCAGCAAGAATGCACCTTTATGTGAGGCGAGGGGGTCCGAACTACCAAAAGGGTCTAGAAAAAATGCGAGCACTTGGAGAGGAAATTGGCATCCCGATTGAGGTTTATGGACCTGAAGCAACAATGACTGGTATATGCAAACAGGCAATACAGTGCATTACTGCTTCCGCTTAA

Protein sequence

>Msa0762930

MARKKIREYDSKRLLKEHFKRLSGKDLPIKSAQVTEATDFTELQDKEQWLSSSKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEYYLNIVSDRLGNSISFSECGGIDIEENWDKVKTVFIPTGVSLTSEIIAPLVATLPLEIKGEIEEFLKVIFTLFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFANELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHLYVRRGGPNYQKGLEKMRALGEEIGIPIEVYGPEATMTGICKQAIQCITASA*