AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1192800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192800 MtrunA17_Chr8g0366351 96.774 279 9 0 17 295 1 279 0.0 539
Msa1192800 MtrunA17_Chr5g0410831 77.660 282 60 1 17 295 1 282 4.73e-149 419
Msa1192800 MtrunA17_Chr1g0161591 56.202 258 101 3 19 269 31 283 3.53e-95 283
Msa1192800 MtrunA17_Chr8g0392141 50.877 285 130 2 4 288 16 290 1.53e-93 279
Msa1192800 MtrunA17_Chr5g0410821 77.778 153 34 0 129 281 1 153 8.27e-76 228
Msa1192800 MtrunA17_Chr7g0253621 50.000 250 107 3 17 250 1 248 9.47e-75 229
Msa1192800 MtrunA17_Chr5g0416421 38.750 240 128 4 22 246 10 245 1.76e-46 156
Msa1192800 MtrunA17_Chr7g0217131 32.283 254 134 5 21 245 7 251 3.03e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1192800 AT4G17720.1 67.910 268 83 2 17 281 1 268 2.05e-122 353
Msa1192800 AT5G46870.2 61.429 280 99 3 17 287 1 280 5.31e-110 321
Msa1192800 AT5G46870.1 61.429 280 99 3 17 287 1 280 5.31e-110 321
Msa1192800 AT5G16840.2 65.106 235 75 4 18 252 4 231 4.72e-102 299
Msa1192800 AT5G16840.1 65.106 235 74 5 18 252 4 230 2.18e-100 295
Msa1192800 AT5G16840.3 64.407 236 76 5 17 252 1 228 8.69e-100 293
Msa1192800 AT1G67950.3 52.766 235 101 2 19 253 28 252 1.30e-79 243
Msa1192800 AT1G67950.2 52.766 235 100 3 19 253 29 252 4.84e-78 239
Msa1192800 AT1G67950.1 52.766 235 100 3 19 253 28 251 5.58e-78 239
Msa1192800 AT5G32450.1 50.407 246 107 2 20 250 5 250 2.34e-74 229
Msa1192800 AT1G67950.4 49.754 203 91 3 51 253 1 192 1.01e-59 190
Msa1192800 AT1G14340.1 36.441 236 135 3 22 246 9 240 1.40e-40 141
Msa1192800 AT3G01210.2 32.520 246 132 5 23 244 9 244 1.46e-29 113
Msa1192800 AT3G01210.1 32.520 246 132 5 23 244 9 244 1.46e-29 113

Find 90 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTGTTGCTGCGGCTTT+TGG 0.121118 8_1:+38808414 None:intergenic
CTTGCGAAGGGATTTATCTT+AGG 0.222166 8_1:-38808846 Msa1192800:CDS
AGAAGTGGATCAGAAGTTTC+AGG 0.297615 8_1:-38808676 Msa1192800:CDS
AAGCGTAACGGCGTCGAAAC+TGG 0.306350 8_1:+38813520 None:intergenic
CAAACTTCCACCTGCTGCTT+TGG 0.312762 8_1:-38809227 Msa1192800:CDS
AATTGCCTTTGTTACTTTCA+AGG 0.314569 8_1:-38812053 Msa1192800:CDS
AGCAGCTGCAAATGCTGATT+TGG 0.315915 8_1:+38808641 None:intergenic
AAGCATATCATTTCCAACTT+TGG 0.355824 8_1:+38808208 None:intergenic
GTGGAAAATGAAGGATTATC+AGG 0.361604 8_1:-38808087 Msa1192800:three_prime_UTR
ACTGGTACTACCTGGGTAAC+TGG 0.368921 8_1:-38808564 Msa1192800:CDS
AATTTGCAGGAGTTTCAAAA+AGG 0.375052 8_1:+38808328 None:intergenic
AGAAACTGAATTTCCAAAGT+TGG 0.404196 8_1:-38808221 Msa1192800:three_prime_UTR
AAAAGTCGGTAATGTTTCCT+TGG 0.410188 8_1:-38812274 Msa1192800:CDS
AGTAAGGTTGCTAAGGCAGC+TGG 0.411693 8_1:-38808534 Msa1192800:CDS
AAAATGAAAAGAACTCCTTT+AGG 0.412585 8_1:+38812235 None:intergenic
TTGCGAAGGGATTTATCTTA+GGG 0.414214 8_1:-38808845 Msa1192800:CDS
CCGAGGCTGTTGAACTCAAC+TGG 0.416921 8_1:+38808781 None:intergenic
CTCACACTGAAACAATTTGC+AGG 0.422823 8_1:+38808315 None:intergenic
TTGAATATGTTGAAATGAAA+AGG 0.433319 8_1:-38812203 Msa1192800:intron
TTCCAAGCCTACACCTGCTC+AGG 0.433849 8_1:-38808382 Msa1192800:CDS
GCAGGTGGAAGTTTGTAATC+TGG 0.442443 8_1:+38809235 None:intergenic
CCAGTATGCGCAGGTCCTTT+CGG 0.448214 8_1:-38808442 Msa1192800:CDS
GACTATCGTCGTGGTGGTGG+TGG 0.450512 8_1:+38813652 None:intergenic
TTTGACTTTGAAACGCGTAC+TGG 0.459422 8_1:+38813608 None:intergenic
AAAGTCGGTAATGTTTCCTT+GGG 0.468203 8_1:-38812273 Msa1192800:CDS
GTGGTGCTGACTCTGCTTTA+CGG 0.473735 8_1:-38808896 Msa1192800:CDS
GCTAAGGCAGCTGGGGATGT+AGG 0.476446 8_1:-38808525 Msa1192800:CDS
TACACAAGGGTGGAAAATGA+AGG 0.479815 8_1:-38808096 Msa1192800:three_prime_UTR
CCGAAAGGACCTGCGCATAC+TGG 0.482179 8_1:+38808442 None:intergenic
TTTGTCAGTTAACATAACTC+TGG 0.492790 8_1:-38809260 Msa1192800:CDS
CGATAGTAGTACTGCCGTCT+CGG 0.498280 8_1:+38812018 None:intergenic
ACCCTGAGCAGGTGTAGGCT+TGG 0.499327 8_1:+38808380 None:intergenic
ACAGATGATGCCAAAGCAGC+AGG 0.499671 8_1:+38809217 None:intergenic
ACAGAAAACAAAAGAGAAAG+TGG 0.508009 8_1:-38808502 Msa1192800:CDS
GCCGCTGAGGGTAAAACTCC+TGG 0.513612 8_1:-38808918 Msa1192800:CDS
CAAAGGATCAAACCCTGAGC+AGG 0.517360 8_1:+38808369 None:intergenic
GGGAGTGTATGATGCAGAGA+TGG 0.521358 8_1:-38812358 Msa1192800:exon
ATATACTCACTGGTACTACC+TGG 0.533676 8_1:-38808572 Msa1192800:CDS
GAACAGAAAGTCAGTACCGC+AGG 0.537626 8_1:-38808618 Msa1192800:CDS
TTCGACTATCGTCGTGGTGG+TGG 0.541199 8_1:+38813649 None:intergenic
TTTACGGAAGGCAGAGGATG+TGG 0.541227 8_1:-38808880 Msa1192800:CDS
AGCATCTGAACAAGACCTAA+AGG 0.544372 8_1:-38812250 Msa1192800:CDS
GAAAGTGGAAAATGCAGAAG+TGG 0.544685 8_1:-38808487 Msa1192800:CDS
GTAAGGTTGCTAAGGCAGCT+GGG 0.546936 8_1:-38808533 Msa1192800:CDS
GTCTTGTTCAGATGCTCCCA+AGG 0.552262 8_1:+38812257 None:intergenic
TTACGCTTCTTCTGATATGT+CGG 0.553543 8_1:-38813505 Msa1192800:intron
CTCTGCTTTACGGAAGGCAG+AGG 0.563214 8_1:-38808886 Msa1192800:CDS
TCCAAGCCTACACCTGCTCA+GGG 0.564645 8_1:-38808381 Msa1192800:CDS
CCAGTTGAGTTCAACAGCCT+CGG 0.565333 8_1:-38808781 Msa1192800:CDS
AAATCCCTTCGCAAGCATGC+TGG 0.567408 8_1:+38808854 None:intergenic
CAGGTCAAAACTATAAAAGT+CGG 0.570204 8_1:-38812288 Msa1192800:CDS
GATGCTGTGAACAAAGCAAA+GGG 0.570764 8_1:-38808819 Msa1192800:CDS
GAGTGGTAGAGTTAAAGAAG+TGG 0.581041 8_1:-38808691 Msa1192800:CDS
AAGAATCGCTATATACTCAC+TGG 0.582491 8_1:-38808582 Msa1192800:CDS
AAAGCAGAGTCAGCACCACC+AGG 0.583320 8_1:+38808900 None:intergenic
GGATCCACAAGGTGCCGAGA+CGG 0.588318 8_1:-38812032 Msa1192800:CDS
TGCTGACTCTGCTTTACGGA+AGG 0.591242 8_1:-38808892 Msa1192800:CDS
GTCACCAGCATGCTTGCGAA+GGG 0.591713 8_1:-38808858 Msa1192800:CDS
AGATGCTGTGAACAAAGCAA+AGG 0.591752 8_1:-38808820 Msa1192800:CDS
ACTGCCGTCTCGGCACCTTG+TGG 0.593659 8_1:+38812028 None:intergenic
GGAGTGTATGATGCAGAGAT+GGG 0.598932 8_1:-38812357 Msa1192800:exon
AGTTGAAGACCAGTATGCGC+AGG 0.604810 8_1:-38808451 Msa1192800:CDS
TGGATCCTTGAAAGTAACAA+AGG 0.609650 8_1:+38812048 None:intergenic
GCAGAGATGGGTTCTCCACA+AGG 0.610522 8_1:-38812345 Msa1192800:exon
AGTGTTAGATATCAGACCAC+GGG 0.611841 8_1:-38812378 Msa1192800:five_prime_UTR
ATGTACAAGAAGTAAATCAA+AGG 0.612134 8_1:+38808352 None:intergenic
CTTAGTGAGAAATTAACTGC+TGG 0.614592 8_1:-38808726 Msa1192800:CDS
AACTGGGGTGTGTGTTTGAG+AGG 0.619779 8_1:+38813537 None:intergenic
ACTAAAAGCACCAGTTACCC+AGG 0.621013 8_1:+38808554 None:intergenic
TATACTCACTGGTACTACCT+GGG 0.629105 8_1:-38808571 Msa1192800:CDS
GATGATGCCAAAGCAGCAGG+TGG 0.631195 8_1:+38809220 None:intergenic
TAAGGTTGCTAAGGCAGCTG+GGG 0.631391 8_1:-38808532 Msa1192800:CDS
CTCTGCATCATACACTCCCG+TGG 0.634900 8_1:+38812362 None:intergenic
GTGCAGTTCACTTGTTGCTG+CGG 0.638692 8_1:+38808407 None:intergenic
CGAGACGGCAGTACTACTAT+CGG 0.643990 8_1:-38812017 Msa1192800:intron
ATCAAACCCTGAGCAGGTGT+AGG 0.644936 8_1:+38808375 None:intergenic
ACTGAACGTTTAGAACCTTG+TGG 0.645991 8_1:+38812330 None:intergenic
GTTTGAGAGGATGAAGAAAA+CGG 0.647479 8_1:+38813550 None:intergenic
GTTACTTTCAAGGATCCACA+AGG 0.648181 8_1:-38812043 Msa1192800:CDS
GCGTAACGGCGTCGAAACTG+GGG 0.651779 8_1:+38813522 None:intergenic
ACATATCAGAAGAAGCGTAA+CGG 0.662837 8_1:+38813508 None:intergenic
AACAGAAAGTCAGTACCGCA+GGG 0.666312 8_1:-38808617 Msa1192800:CDS
AAGAACAATCTCAAAGCATG+CGG 0.686734 8_1:+38812402 None:intergenic
AAGTGTTAGATATCAGACCA+CGG 0.687790 8_1:-38812379 Msa1192800:five_prime_UTR
GCTGAGGGTAAAACTCCTGG+TGG 0.693763 8_1:-38808915 Msa1192800:CDS
CGTGCTTTCGACTATCGTCG+TGG 0.698859 8_1:+38813643 None:intergenic
AAAAGATGTAACTTTCGCCG+AGG 0.709369 8_1:+38808764 None:intergenic
GCTGGTGCATCAGTTGTGAG+TGG 0.711756 8_1:-38808708 Msa1192800:CDS
GCTTTCGACTATCGTCGTGG+TGG 0.732645 8_1:+38813646 None:intergenic
CTTCATTATAGCAGACCCTG+CGG 0.733885 8_1:+38808602 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAGAATTAATAAAAA+GGG + chr8_1:38809277-38809296 None:intergenic 10.0%
!! TTACATAAGAATTAATAAAA+AGG + chr8_1:38809278-38809297 None:intergenic 10.0%
!! GTATAATAAAACTTAATAAT+GGG + chr8_1:38809613-38809632 None:intergenic 10.0%
!! TGTATAATAAAACTTAATAA+TGG + chr8_1:38809614-38809633 None:intergenic 10.0%
!! ATATATCAATTAGATTAATA+CGG + chr8_1:38811019-38811038 None:intergenic 10.0%
!!! TTTTTTATATATATAATTGC+TGG + chr8_1:38812419-38812438 None:intergenic 10.0%
!!! AAAATTTTATTTTTACACAA+GGG - chr8_1:38813636-38813655 Msa1192800:five_prime_UTR 10.0%
!! TTAAATGCAATATCAAAAAA+GGG + chr8_1:38808965-38808984 None:intergenic 15.0%
!! TTTAAATGCAATATCAAAAA+AGG + chr8_1:38808966-38808985 None:intergenic 15.0%
!! ATACTAATAGTATAGTTATA+AGG - chr8_1:38808991-38809010 Msa1192800:intron 15.0%
!! ATCTATTAATTCTTATGTAA+AGG - chr8_1:38809079-38809098 Msa1192800:intron 15.0%
!! TCTATTAATTCTTATGTAAA+GGG - chr8_1:38809080-38809099 Msa1192800:intron 15.0%
!! AGTATAAAATTGAATGAAAA+AGG + chr8_1:38810966-38810985 None:intergenic 15.0%
!! GAACAAATAAAATAGTTTAT+CGG + chr8_1:38811082-38811101 None:intergenic 15.0%
!! TCAGATTTAATATAAATTGA+AGG - chr8_1:38811878-38811897 Msa1192800:intron 15.0%
!! CAGATTTAATATAAATTGAA+GGG - chr8_1:38811879-38811898 Msa1192800:intron 15.0%
!! AGATTTAATATAAATTGAAG+GGG - chr8_1:38811880-38811899 Msa1192800:intron 15.0%
!!! TCTGATTTATCTTTTTATTT+GGG - chr8_1:38812071-38812090 Msa1192800:CDS 15.0%
!! TTAATAATACTAATCATTGA+AGG - chr8_1:38812286-38812305 Msa1192800:CDS 15.0%
!!! AAATATTACACATTTGTTAT+AGG + chr8_1:38812802-38812821 None:intergenic 15.0%
!!! GAAAATTTTATTTTTACACA+AGG - chr8_1:38813635-38813654 Msa1192800:five_prime_UTR 15.0%
!! TTTAAATGTAAAACAAAGAC+CGG + chr8_1:38808526-38808545 None:intergenic 20.0%
!!! AAATAGAACTATTTGAAATG+TGG - chr8_1:38808571-38808590 Msa1192800:CDS 20.0%
!! AATAAAAAAAATGCAATGAG+TGG - chr8_1:38809030-38809049 Msa1192800:intron 20.0%
!! CTATTAATTCTTATGTAAAG+GGG - chr8_1:38809081-38809100 Msa1192800:intron 20.0%
!!! CTATTATTACTTTTAGTCAT+AGG - chr8_1:38809307-38809326 Msa1192800:intron 20.0%
!! TTGAATATGTTGAAATGAAA+AGG - chr8_1:38809542-38809561 Msa1192800:intron 20.0%
!! GTAATGAATATATGATTCTT+TGG + chr8_1:38809861-38809880 None:intergenic 20.0%
!! TATATTATATGTCTGATTCA+TGG - chr8_1:38810677-38810696 Msa1192800:intron 20.0%
!! ATATTATATGTCTGATTCAT+GGG - chr8_1:38810678-38810697 Msa1192800:intron 20.0%
!! AGGATTGAGAATAATAAAAT+AGG - chr8_1:38810855-38810874 Msa1192800:intron 20.0%
!! GGATTGAGAATAATAAAATA+GGG - chr8_1:38810856-38810875 Msa1192800:intron 20.0%
!!! AGTTTTTAGTTAAGTTTTTG+TGG + chr8_1:38811397-38811416 None:intergenic 20.0%
!! ACAAAAACTTAACTAAAAAC+TGG - chr8_1:38811396-38811415 Msa1192800:intron 20.0%
!! TTAAACCTCTTATAAAAGAT+TGG + chr8_1:38811468-38811487 None:intergenic 20.0%
!!! TTATATCTAACACTATTTTC+CGG - chr8_1:38811579-38811598 Msa1192800:intron 20.0%
!!! ATTATCAAAGTTGATCTTTT+TGG - chr8_1:38811733-38811752 Msa1192800:intron 20.0%
!!! GTCTGATTTATCTTTTTATT+TGG - chr8_1:38812070-38812089 Msa1192800:CDS 20.0%
!!! ATTTGATGCATGTATATTTT+TGG - chr8_1:38812346-38812365 Msa1192800:exon 20.0%
!!! ACAAATGTGTAATATTTTTC+AGG - chr8_1:38812805-38812824 Msa1192800:intron 20.0%
! TTAAATGTAAAACAAAGACC+GGG + chr8_1:38808525-38808544 None:intergenic 25.0%
!!! TTATCTTACTGATTTACACA+TGG - chr8_1:38808607-38808626 Msa1192800:CDS 25.0%
! AGTATCAGTTAGTTAAAATC+GGG + chr8_1:38808762-38808781 None:intergenic 25.0%
! CAGTATCAGTTAGTTAAAAT+CGG + chr8_1:38808763-38808782 None:intergenic 25.0%
! AAGAAAGCAATAAATGACAA+AGG + chr8_1:38808892-38808911 None:intergenic 25.0%
!!! GTTACATGTATTTTATTTGC+AGG - chr8_1:38809438-38809457 Msa1192800:intron 25.0%
! AAAATGAAAAGAACTCCTTT+AGG + chr8_1:38809513-38809532 None:intergenic 25.0%
! TAATATATGTGTATCATGCA+TGG - chr8_1:38809777-38809796 Msa1192800:intron 25.0%
! ATATTCATTACTGAGATTTC+AGG - chr8_1:38809870-38809889 Msa1192800:intron 25.0%
! TATTCATTACTGAGATTTCA+GGG - chr8_1:38809871-38809890 Msa1192800:intron 25.0%
! AGAAAACTGATATTTACTTG+AGG - chr8_1:38809996-38810015 Msa1192800:intron 25.0%
! CATGTTTATGTGAAATGAAT+AGG + chr8_1:38810398-38810417 None:intergenic 25.0%
! GAATCTATATCATAAGAAAG+AGG + chr8_1:38810499-38810518 None:intergenic 25.0%
! AAATCTCAGAATTTCAGATA+CGG + chr8_1:38810521-38810540 None:intergenic 25.0%
! TATTATATGTCTGATTCATG+GGG - chr8_1:38810679-38810698 Msa1192800:intron 25.0%
!!! TTATTTTTCAGCACAAAGTA+GGG + chr8_1:38810766-38810785 None:intergenic 25.0%
!! TTCAATTTTATACTCCCTAA+AGG - chr8_1:38810972-38810991 Msa1192800:intron 25.0%
!!! TGTTCTATTTTGATAGAAAC+TGG - chr8_1:38811097-38811116 Msa1192800:intron 25.0%
! TATTCAGTTATATATCCTAC+TGG + chr8_1:38811125-38811144 None:intergenic 25.0%
! ACTGTATTACTGTATATTCT+CGG - chr8_1:38811148-38811167 Msa1192800:intron 25.0%
! AAGTTATTAAGTGGTTGATT+GGG + chr8_1:38811279-38811298 None:intergenic 25.0%
! AGCAAGAATAAAAAGGAAAA+GGG + chr8_1:38811324-38811343 None:intergenic 25.0%
! TAGCAAGAATAAAAAGGAAA+AGG + chr8_1:38811325-38811344 None:intergenic 25.0%
!! TCTTATAAAAGATTGGCTAT+AGG + chr8_1:38811461-38811480 None:intergenic 25.0%
!! TATAGCCAATCTTTTATAAG+AGG - chr8_1:38811460-38811479 Msa1192800:intron 25.0%
! AACATCTTCTCTTAATATAG+AGG - chr8_1:38811486-38811505 Msa1192800:intron 25.0%
! GTTGCTTAATCTTTATGTTA+TGG - chr8_1:38811710-38811729 Msa1192800:intron 25.0%
!! TTTTATCTTAAAGCAGTGAA+GGG + chr8_1:38811807-38811826 None:intergenic 25.0%
!! ATTTTATCTTAAAGCAGTGA+AGG + chr8_1:38811808-38811827 None:intergenic 25.0%
!!! ACACTAGTTGTCTTATTTTT+GGG - chr8_1:38811971-38811990 Msa1192800:intron 25.0%
! AAATTGAAAAGAATAGCCTT+TGG - chr8_1:38812007-38812026 Msa1192800:intron 25.0%
! AATAAGTTTACCAACATAGT+AGG + chr8_1:38812154-38812173 None:intergenic 25.0%
! TCCTTAAAATAGCATCAAAT+TGG - chr8_1:38812235-38812254 Msa1192800:CDS 25.0%
!!! ACCAATTTGATGCTATTTTA+AGG + chr8_1:38812239-38812258 None:intergenic 25.0%
! AAGAAACAAGACACTTAATT+TGG + chr8_1:38812376-38812395 None:intergenic 25.0%
! TTTGGATAAGTGGTATAATA+TGG - chr8_1:38812593-38812612 Msa1192800:intron 25.0%
! GAAATGAATATCCTAGTTAA+TGG + chr8_1:38812715-38812734 None:intergenic 25.0%
! GATATTCATTTCATCCTATT+CGG - chr8_1:38812723-38812742 Msa1192800:intron 25.0%
! ATGTACAAGAAGTAAATCAA+AGG + chr8_1:38813396-38813415 None:intergenic 25.0%
! AGTCTATGGAGAAAAATATA+AGG - chr8_1:38813577-38813596 Msa1192800:five_prime_UTR 25.0%
! GTCTATGGAGAAAAATATAA+GGG - chr8_1:38813578-38813597 Msa1192800:five_prime_UTR 25.0%
!!! ATTTTATTTTTACACAAGGG+TGG - chr8_1:38813639-38813658 Msa1192800:five_prime_UTR 25.0%
CTGATATAAGAAGAGTAAGA+CGG + chr8_1:38808335-38808354 None:intergenic 30.0%
TCTTCTTATATCAGACTGTT+TGG - chr8_1:38808341-38808360 Msa1192800:three_prime_UTR 30.0%
TCGTAGAACTTATGCAAATA+AGG + chr8_1:38808404-38808423 None:intergenic 30.0%
TAAATGTAAAACAAAGACCG+GGG + chr8_1:38808524-38808543 None:intergenic 30.0%
! ACTATTTGAAATGTGGTTTG+AGG - chr8_1:38808578-38808597 Msa1192800:CDS 30.0%
!! CATGGATTTTGAGTGATTTA+AGG - chr8_1:38808625-38808644 Msa1192800:CDS 30.0%
TAAAATCGTAAATCGTGCAA+TGG + chr8_1:38808730-38808749 None:intergenic 30.0%
!!! CGATTTTAACTAACTGATAC+TGG - chr8_1:38808761-38808780 Msa1192800:CDS 30.0%
AACCTCGTGTATAAAAAACA+GGG - chr8_1:38809172-38809191 Msa1192800:intron 30.0%
AATTAATAAAAAGGGCAACC+CGG + chr8_1:38809269-38809288 None:intergenic 30.0%
CAGGTCAAAACTATAAAAGT+CGG - chr8_1:38809457-38809476 Msa1192800:intron 30.0%
! AAGGAGTTCTTTTCATTTTC+TGG - chr8_1:38809514-38809533 Msa1192800:intron 30.0%
!! AATTGCCTTTGTTACTTTCA+AGG - chr8_1:38809692-38809711 Msa1192800:intron 30.0%
CAATCCAAGACAAATTGATT+GGG + chr8_1:38809834-38809853 None:intergenic 30.0%
ACAATCCAAGACAAATTGAT+TGG + chr8_1:38809835-38809854 None:intergenic 30.0%
! GTGTGTCATTATCCTAATAA+AGG - chr8_1:38809911-38809930 Msa1192800:intron 30.0%
!!! AGTTGACTTGTTTAGCTTTT+TGG - chr8_1:38809944-38809963 Msa1192800:intron 30.0%
! AAACTGATAATGCAGCATAA+GGG - chr8_1:38810042-38810061 Msa1192800:intron 30.0%
AGGATACTTATCACCAAAAA+AGG + chr8_1:38810116-38810135 None:intergenic 30.0%
! TTTCATTTTGTCAACACCAA+GGG - chr8_1:38810461-38810480 Msa1192800:intron 30.0%
ACCAACTATCACAAAAACTT+AGG - chr8_1:38810628-38810647 Msa1192800:intron 30.0%
ATCACAAAAACTTAGGCTAT+TGG - chr8_1:38810635-38810654 Msa1192800:intron 30.0%
TCACAAAAACTTAGGCTATT+GGG - chr8_1:38810636-38810655 Msa1192800:intron 30.0%
!!! GTTATTTTTCAGCACAAAGT+AGG + chr8_1:38810767-38810786 None:intergenic 30.0%
! ACTCTTATTTAGACCAATAG+AGG - chr8_1:38810785-38810804 Msa1192800:intron 30.0%
AGATTGAACTCTAGATCAAA+TGG - chr8_1:38810814-38810833 Msa1192800:intron 30.0%
ACGGAGAATAATGATAGAAA+GGG + chr8_1:38811000-38811019 None:intergenic 30.0%
TACGGAGAATAATGATAGAA+AGG + chr8_1:38811001-38811020 None:intergenic 30.0%
AGTTTATCGGTATATCAGTT+TGG + chr8_1:38811069-38811088 None:intergenic 30.0%
GAAGTTATTAAGTGGTTGAT+TGG + chr8_1:38811280-38811299 None:intergenic 30.0%
GTTGTCTAGAAGTTATTAAG+TGG + chr8_1:38811288-38811307 None:intergenic 30.0%
TGTGGTTAGCAAGAATAAAA+AGG + chr8_1:38811331-38811350 None:intergenic 30.0%
ATGTTTGTCAATTATGTGTG+TGG + chr8_1:38811349-38811368 None:intergenic 30.0%
! ACTTAACTAAAAACTGGCTT+TGG - chr8_1:38811402-38811421 Msa1192800:intron 30.0%
! TATAAAAGATTGGCTATAGG+AGG + chr8_1:38811458-38811477 None:intergenic 30.0%
! AGTCAATAGCTTAAGCTTTT+GGG + chr8_1:38811540-38811559 None:intergenic 30.0%
! CTATTTTCCGGCAATTTTAT+TGG - chr8_1:38811591-38811610 Msa1192800:intron 30.0%
TGCATATCCAATAAAATTGC+CGG + chr8_1:38811601-38811620 None:intergenic 30.0%
ACCAACTAAGTATACCAAAT+AGG + chr8_1:38811630-38811649 None:intergenic 30.0%
AAATAAGACAACTAGTGTCT+AGG + chr8_1:38811969-38811988 None:intergenic 30.0%
!!! GACACTAGTTGTCTTATTTT+TGG - chr8_1:38811970-38811989 Msa1192800:intron 30.0%
! CTATGTTGGTAAACTTATTC+TGG - chr8_1:38812155-38812174 Msa1192800:intron 30.0%
TGATATCATTCACTGCTAAA+TGG - chr8_1:38812316-38812335 Msa1192800:CDS 30.0%
!! GTGTCTTGTTTCTTTAATGT+AGG - chr8_1:38812382-38812401 Msa1192800:five_prime_UTR 30.0%
!! ACCAAGTTTTTCAACATATC+AGG - chr8_1:38812446-38812465 Msa1192800:intron 30.0%
!! CCAAGTTTTTCAACATATCA+GGG - chr8_1:38812447-38812466 Msa1192800:intron 30.0%
!! CAAGTTTTTCAACATATCAG+GGG - chr8_1:38812448-38812467 Msa1192800:intron 30.0%
!! AAGTTTTTCAACATATCAGG+GGG - chr8_1:38812449-38812468 Msa1192800:intron 30.0%
TTTGTCAGTTAACATAACTC+TGG - chr8_1:38812485-38812504 Msa1192800:intron 30.0%
! ATGTTTGGAATGGTGATATA+AGG + chr8_1:38812691-38812710 None:intergenic 30.0%
AGTTAATGGTATGTTTGGAA+TGG + chr8_1:38812701-38812720 None:intergenic 30.0%
TTCCAAACATACCATTAACT+AGG - chr8_1:38812701-38812720 Msa1192800:intron 30.0%
ATCCTAGTTAATGGTATGTT+TGG + chr8_1:38812706-38812725 None:intergenic 30.0%
GGCAAAAATATCCTAGTTAA+TGG + chr8_1:38812781-38812800 None:intergenic 30.0%
! ACATCTTTTGACCAAAAACT+TGG - chr8_1:38812995-38813014 Msa1192800:intron 30.0%
! CATCTTTTGACCAAAAACTT+GGG - chr8_1:38812996-38813015 Msa1192800:intron 30.0%
ACAGAAAACAAAAGAGAAAG+TGG - chr8_1:38813243-38813262 Msa1192800:intron 30.0%
AATTTGCAGGAGTTTCAAAA+AGG + chr8_1:38813420-38813439 None:intergenic 30.0%
! GACAGATTTTACTAGTTACT+TGG - chr8_1:38813462-38813481 Msa1192800:intron 30.0%
AGAAACTGAATTTCCAAAGT+TGG - chr8_1:38813524-38813543 Msa1192800:five_prime_UTR 30.0%
AAGCATATCATTTCCAACTT+TGG + chr8_1:38813540-38813559 None:intergenic 30.0%
! TTTTTCTCCATAGACTGAAT+GGG + chr8_1:38813573-38813592 None:intergenic 30.0%
! ATTTTTCTCCATAGACTGAA+TGG + chr8_1:38813574-38813593 None:intergenic 30.0%
TGGAGAAAAATATAAGGGAA+TGG - chr8_1:38813583-38813602 Msa1192800:five_prime_UTR 30.0%
GTTTGAGAGGATGAAGAAAA+CGG + chr8_1:38808198-38808217 None:intergenic 35.0%
! ACATATCAGAAGAAGCGTAA+CGG + chr8_1:38808240-38808259 None:intergenic 35.0%
TTACGCTTCTTCTGATATGT+CGG - chr8_1:38808240-38808259 Msa1192800:three_prime_UTR 35.0%
AAATGTAAAACAAAGACCGG+GGG + chr8_1:38808523-38808542 None:intergenic 35.0%
CAATAAATGACAAAGGAGAC+AGG + chr8_1:38808885-38808904 None:intergenic 35.0%
TCACATGACAACAACTTTAC+CGG + chr8_1:38809121-38809140 None:intergenic 35.0%
TCATGTGACTTAAACGTCAT+AGG - chr8_1:38809133-38809152 Msa1192800:intron 35.0%
CAACCTCGTGTATAAAAAAC+AGG - chr8_1:38809171-38809190 Msa1192800:intron 35.0%
!!! TACCCTGTTTTTTATACACG+AGG + chr8_1:38809177-38809196 None:intergenic 35.0%
CGTGTATAAAAAACAGGGTA+AGG - chr8_1:38809177-38809196 Msa1192800:intron 35.0%
! ACTTTTAGTCATAGGAGTCT+AGG - chr8_1:38809315-38809334 Msa1192800:intron 35.0%
AAGAACAATCTCAAAGCATG+CGG + chr8_1:38809346-38809365 None:intergenic 35.0%
AAGTGTTAGATATCAGACCA+CGG - chr8_1:38809366-38809385 Msa1192800:intron 35.0%
AAAAGTCGGTAATGTTTCCT+TGG - chr8_1:38809471-38809490 Msa1192800:intron 35.0%
AAAGTCGGTAATGTTTCCTT+GGG - chr8_1:38809472-38809491 Msa1192800:intron 35.0%
TGGATCCTTGAAAGTAACAA+AGG + chr8_1:38809700-38809719 None:intergenic 35.0%
ATTAGCTGATGATCAATGTC+AGG + chr8_1:38809761-38809780 None:intergenic 35.0%
AAGCTAAACAAGTCAACTCA+AGG + chr8_1:38809942-38809961 None:intergenic 35.0%
! GAAACTGATAATGCAGCATA+AGG - chr8_1:38810041-38810060 Msa1192800:intron 35.0%
ACTTATCACCAAAAAAGGCA+GGG + chr8_1:38810111-38810130 None:intergenic 35.0%
TACTTATCACCAAAAAAGGC+AGG + chr8_1:38810112-38810131 None:intergenic 35.0%
AAATGAACGAGATCAAATGC+TGG + chr8_1:38810236-38810255 None:intergenic 35.0%
! TATGTCTCAGCTACTTTCTT+AGG - chr8_1:38810348-38810367 Msa1192800:intron 35.0%
! AGCTACTTTCTTAGGCATTT+AGG - chr8_1:38810356-38810375 Msa1192800:intron 35.0%
TGCACAATATGAACTAACAG+TGG + chr8_1:38810434-38810453 None:intergenic 35.0%
! GTGTTGACAAAATGAAACAG+AGG + chr8_1:38810458-38810477 None:intergenic 35.0%
! GTTTCATTTTGTCAACACCA+AGG - chr8_1:38810460-38810479 Msa1192800:intron 35.0%
TAAACATCACACATCAGGTT+TGG - chr8_1:38810556-38810575 Msa1192800:intron 35.0%
! GCCTAAGTTTTTGTGATAGT+TGG + chr8_1:38810632-38810651 None:intergenic 35.0%
TCAATCTCTGTTTCCTCTAT+TGG + chr8_1:38810801-38810820 None:intergenic 35.0%
AAGAAAGAATTCTCCACCAA+GGG - chr8_1:38810937-38810956 Msa1192800:intron 35.0%
TGAATGAAAAAGGAAACCCT+TGG + chr8_1:38810956-38810975 None:intergenic 35.0%
GGAGAATAATGATAGAAAGG+GGG + chr8_1:38810998-38811017 None:intergenic 35.0%
CGGAGAATAATGATAGAAAG+GGG + chr8_1:38810999-38811018 None:intergenic 35.0%
GTATTACTGTATATTCTCGG+AGG - chr8_1:38811151-38811170 Msa1192800:intron 35.0%
CTGTTGTGTATGTCAGATTT+GGG + chr8_1:38811184-38811203 None:intergenic 35.0%
TCTGTTGTGTATGTCAGATT+TGG + chr8_1:38811185-38811204 None:intergenic 35.0%
ACAGAATTGAAAAGTTCCAC+AGG - chr8_1:38811200-38811219 Msa1192800:intron 35.0%
AGAATCAAGCTCTTGAAACT+TGG + chr8_1:38811250-38811269 None:intergenic 35.0%
TATTAAGTGGTTGATTGGGA+AGG + chr8_1:38811275-38811294 None:intergenic 35.0%
! CAGTCAATAGCTTAAGCTTT+TGG + chr8_1:38811541-38811560 None:intergenic 35.0%
GCCTATTTGGTATACTTAGT+TGG - chr8_1:38811626-38811645 Msa1192800:intron 35.0%
TGCTACTAGAACTAGAAGAA+TGG - chr8_1:38811835-38811854 Msa1192800:intron 35.0%
GCTACTAGAACTAGAAGAAT+GGG - chr8_1:38811836-38811855 Msa1192800:intron 35.0%
GCAACATATCATACTTCCAA+AGG + chr8_1:38812026-38812045 None:intergenic 35.0%
TTGTTGACATCCTACTATGT+TGG - chr8_1:38812141-38812160 Msa1192800:intron 35.0%
ATGTCACTGATATCTATGAG+AGG + chr8_1:38812198-38812217 None:intergenic 35.0%
AAATAGCATCAAATTGGTCC+TGG - chr8_1:38812241-38812260 Msa1192800:CDS 35.0%
CCCTGATATGTTGAAAAACT+TGG + chr8_1:38812450-38812469 None:intergenic 35.0%
TTAACTAGAGGGTCTTTACA+AGG + chr8_1:38812557-38812576 None:intergenic 35.0%
ATGAACTCATGTCATCCTAT+TGG - chr8_1:38812656-38812675 Msa1192800:intron 35.0%
TGAACTCATGTCATCCTATT+GGG - chr8_1:38812657-38812676 Msa1192800:intron 35.0%
! TTTGGAATGGTGATATAAGG+TGG + chr8_1:38812688-38812707 None:intergenic 35.0%
! TTTGGAATGGTGATATAAGG+TGG + chr8_1:38812688-38812707 None:intergenic 35.0%
! GTGTTTGGAATGGTGATATA+AGG + chr8_1:38812757-38812776 None:intergenic 35.0%
AGTTAATGGTGTGTTTGGAA+TGG + chr8_1:38812767-38812786 None:intergenic 35.0%
TTCCAAACACACCATTAACT+AGG - chr8_1:38812767-38812786 Msa1192800:intron 35.0%
ATCCTAGTTAATGGTGTGTT+TGG + chr8_1:38812772-38812791 None:intergenic 35.0%
TTGCGAAGGGATTTATCTTA+GGG - chr8_1:38812900-38812919 Msa1192800:intron 35.0%
CTTAGTGAGAAATTAACTGC+TGG - chr8_1:38813019-38813038 Msa1192800:intron 35.0%
AAGAATCGCTATATACTCAC+TGG - chr8_1:38813163-38813182 Msa1192800:intron 35.0%
! TGCTTTTAGTAAGGTTGCTA+AGG - chr8_1:38813204-38813223 Msa1192800:intron 35.0%
GTGGAAAATGAAGGATTATC+AGG - chr8_1:38813658-38813677 Msa1192800:five_prime_UTR 35.0%
!! TTTGACTTTGAAACGCGTAC+TGG + chr8_1:38808140-38808159 None:intergenic 40.0%
CTAGGAGGAGCAAGATTTAT+GGG + chr8_1:38808310-38808329 None:intergenic 40.0%
TCTAGGAGGAGCAAGATTTA+TGG + chr8_1:38808311-38808330 None:intergenic 40.0%
AAGAAGAGTAAGACGGATCT+AGG + chr8_1:38808328-38808347 None:intergenic 40.0%
! TGATACTGGCTGATCAAGTT+AGG - chr8_1:38808775-38808794 Msa1192800:CDS 40.0%
! GATACTGGCTGATCAAGTTA+GGG - chr8_1:38808776-38808795 Msa1192800:CDS 40.0%
!! TGTTTTCAGTGTCGAGCTTT+TGG - chr8_1:38808841-38808860 Msa1192800:CDS 40.0%
!! GTTTTCAGTGTCGAGCTTTT+GGG - chr8_1:38808842-38808861 Msa1192800:CDS 40.0%
AATGACAAAGGAGACAGGAA+AGG + chr8_1:38808880-38808899 None:intergenic 40.0%
! TTATACACGAGGTTGTTTCC+AGG + chr8_1:38809166-38809185 None:intergenic 40.0%
GCTGCATACAATACACCAAA+TGG - chr8_1:38809199-38809218 Msa1192800:intron 40.0%
GCATACAATACACCAAATGG+TGG - chr8_1:38809202-38809221 Msa1192800:intron 40.0%
AGTGTTAGATATCAGACCAC+GGG - chr8_1:38809367-38809386 Msa1192800:intron 40.0%
! ACTGAACGTTTAGAACCTTG+TGG + chr8_1:38809418-38809437 None:intergenic 40.0%
AGCATCTGAACAAGACCTAA+AGG - chr8_1:38809495-38809514 Msa1192800:intron 40.0%
! GTTACTTTCAAGGATCCACA+AGG - chr8_1:38809702-38809721 Msa1192800:intron 40.0%
AGCACCCAATCAATTTGTCT+TGG - chr8_1:38809827-38809846 Msa1192800:intron 40.0%
CTCAAGGCAATGCCTTTATT+AGG + chr8_1:38809926-38809945 None:intergenic 40.0%
TGGCTAGATAATGCAGCATA+AGG - chr8_1:38809964-38809983 Msa1192800:intron 40.0%
GGCTAGATAATGCAGCATAA+GGG - chr8_1:38809965-38809984 Msa1192800:intron 40.0%
! ATTTTCACCCCTGCCTTTTT+TGG - chr8_1:38810100-38810119 Msa1192800:intron 40.0%
CTTATCACCAAAAAAGGCAG+GGG + chr8_1:38810110-38810129 None:intergenic 40.0%
AGTATCCTCCATTTCCCAAA+AGG - chr8_1:38810128-38810147 Msa1192800:intron 40.0%
!! AAATGCCTTTTGGGAAATGG+AGG + chr8_1:38810136-38810155 None:intergenic 40.0%
!! GAGAAATGCCTTTTGGGAAA+TGG + chr8_1:38810139-38810158 None:intergenic 40.0%
! TTACGCGAGAAATGCCTTTT+GGG + chr8_1:38810145-38810164 None:intergenic 40.0%
! ATTACGCGAGAAATGCCTTT+TGG + chr8_1:38810146-38810165 None:intergenic 40.0%
AATCCCTTGCGTGTTTAGTT+TGG - chr8_1:38810308-38810327 Msa1192800:intron 40.0%
!! GTGTTTAGTTTGGACCTTAG+AGG - chr8_1:38810318-38810337 Msa1192800:intron 40.0%
AGACATATATGCAGCCTCTA+AGG + chr8_1:38810335-38810354 None:intergenic 40.0%
GAGCATAAACATCACACATC+AGG - chr8_1:38810551-38810570 Msa1192800:intron 40.0%
AAACTTAGGCTATTGGGTGA+AGG - chr8_1:38810642-38810661 Msa1192800:intron 40.0%
CAAAGGGCTCTTATGTTAGT+GGG + chr8_1:38810713-38810732 None:intergenic 40.0%
! TTTTCAGCACAAAGTAGGGT+GGG + chr8_1:38810762-38810781 None:intergenic 40.0%
!! TTTTTCAGCACAAAGTAGGG+TGG + chr8_1:38810763-38810782 None:intergenic 40.0%
GAAGAAAGAATTCTCCACCA+AGG - chr8_1:38810936-38810955 Msa1192800:intron 40.0%
ATGAAAAAGGAAACCCTTGG+TGG + chr8_1:38810953-38810972 None:intergenic 40.0%
TGATAGAAACTGGTACCAGT+AGG - chr8_1:38811107-38811126 Msa1192800:intron 40.0%
TCAAGCTCTTGAAACTTGGT+AGG + chr8_1:38811246-38811265 None:intergenic 40.0%
!! AAACTGGCTTTGGTCAGTAT+TGG - chr8_1:38811412-38811431 Msa1192800:intron 40.0%
GATATGCATCTCTGCCTATT+TGG - chr8_1:38811613-38811632 Msa1192800:intron 40.0%
! CCTTCTCTTTTCTCTGAACA+TGG + chr8_1:38811654-38811673 None:intergenic 40.0%
CCATGTTCAGAGAAAAGAGA+AGG - chr8_1:38811651-38811670 Msa1192800:intron 40.0%
ATTCATGTGATGTCTGATGC+TGG - chr8_1:38811773-38811792 Msa1192800:intron 40.0%
TCAGACATATCCCAAAGTAG+AGG + chr8_1:38812056-38812075 None:intergenic 40.0%
TGAGAGGTTGCATACATCAT+TGG + chr8_1:38812182-38812201 None:intergenic 40.0%
CCTTGAGCACATTAACTAGA+GGG + chr8_1:38812568-38812587 None:intergenic 40.0%
CCTCTAGTTAATGTGCTCAA+GGG - chr8_1:38812566-38812585 Msa1192800:intron 40.0%
! AATGTGCTCAAGGGTATGTT+TGG - chr8_1:38812575-38812594 Msa1192800:intron 40.0%
! CAAGGGTATGTTTGGATAAG+TGG - chr8_1:38812583-38812602 Msa1192800:intron 40.0%
ATAAGGTGGAATAGCCCAAT+AGG + chr8_1:38812674-38812693 None:intergenic 40.0%
ATAAGGTGGAATAGCCGAAT+AGG + chr8_1:38812740-38812759 None:intergenic 40.0%
!!! TAATATTTTTCAGGCCGCTG+AGG - chr8_1:38812814-38812833 Msa1192800:intron 40.0%
!!! AATATTTTTCAGGCCGCTGA+GGG - chr8_1:38812815-38812834 Msa1192800:intron 40.0%
CTTGCGAAGGGATTTATCTT+AGG - chr8_1:38812899-38812918 Msa1192800:intron 40.0%
AGATGCTGTGAACAAAGCAA+AGG - chr8_1:38812925-38812944 Msa1192800:intron 40.0%
GATGCTGTGAACAAAGCAAA+GGG - chr8_1:38812926-38812945 Msa1192800:intron 40.0%
AAAAGATGTAACTTTCGCCG+AGG + chr8_1:38812984-38813003 None:intergenic 40.0%
! TCTCACTAAGCCCAAGTTTT+TGG + chr8_1:38813009-38813028 None:intergenic 40.0%
GAGTGGTAGAGTTAAAGAAG+TGG - chr8_1:38813054-38813073 Msa1192800:intron 40.0%
ATATACTCACTGGTACTACC+TGG - chr8_1:38813173-38813192 Msa1192800:intron 40.0%
TATACTCACTGGTACTACCT+GGG - chr8_1:38813174-38813193 Msa1192800:intron 40.0%
! GGTAACTGGTGCTTTTAGTA+AGG - chr8_1:38813195-38813214 Msa1192800:intron 40.0%
GAAAGTGGAAAATGCAGAAG+TGG - chr8_1:38813258-38813277 Msa1192800:intron 40.0%
CTCACACTGAAACAATTTGC+AGG + chr8_1:38813433-38813452 None:intergenic 40.0%
! GTCTTTTCCCATTCAGTCTA+TGG - chr8_1:38813563-38813582 Msa1192800:five_prime_UTR 40.0%
TACACAAGGGTGGAAAATGA+AGG - chr8_1:38813649-38813668 Msa1192800:five_prime_UTR 40.0%
AAGAGTAAGACGGATCTAGG+AGG + chr8_1:38808325-38808344 None:intergenic 45.0%
!!! AGTGTCGAGCTTTTGGGTTA+AGG - chr8_1:38808848-38808867 Msa1192800:CDS 45.0%
CTTATGTAAAGGGGTAGCCT+TGG - chr8_1:38809090-38809109 Msa1192800:intron 45.0%
AACGTCATAGGTTCAAGTCC+TGG - chr8_1:38809145-38809164 Msa1192800:intron 45.0%
GGAGTGTATGATGCAGAGAT+GGG - chr8_1:38809388-38809407 Msa1192800:intron 45.0%
GGTCCAAACTAAACACGCAA+GGG + chr8_1:38810314-38810333 None:intergenic 45.0%
AGGTCCAAACTAAACACGCA+AGG + chr8_1:38810315-38810334 None:intergenic 45.0%
GAGGTTCACAATGAAACCCT+TGG + chr8_1:38810480-38810499 None:intergenic 45.0%
! ATTGGGTGAAGGCACACAAA+TGG - chr8_1:38810653-38810672 Msa1192800:intron 45.0%
! GCTCTTATGTTAGTGGGCAA+GGG + chr8_1:38810707-38810726 None:intergenic 45.0%
CCAAAGGGCTCTTATGTTAG+TGG + chr8_1:38810714-38810733 None:intergenic 45.0%
CCACTAACATAAGAGCCCTT+TGG - chr8_1:38810711-38810730 Msa1192800:intron 45.0%
AACATAAGAGCCCTTTGGTC+TGG - chr8_1:38810716-38810735 Msa1192800:intron 45.0%
GTCTACACTTCCAGACCAAA+GGG + chr8_1:38810729-38810748 None:intergenic 45.0%
TGTCTACACTTCCAGACCAA+AGG + chr8_1:38810730-38810749 None:intergenic 45.0%
! TGGAAGTGTAGACAATGCAC+AGG - chr8_1:38810736-38810755 Msa1192800:intron 45.0%
GGTCAATGTGTTACGAACTC+AGG - chr8_1:38810835-38810854 Msa1192800:intron 45.0%
TGATAGAAAGGGGGCCTTTA+GGG + chr8_1:38810989-38811008 None:intergenic 45.0%
ATGATAGAAAGGGGGCCTTT+AGG + chr8_1:38810990-38811009 None:intergenic 45.0%
! ACAGGAAAGTGCAGTAGACA+CGG - chr8_1:38811218-38811237 Msa1192800:intron 45.0%
!! TTGGTCAGTATTGGCCTTCT+CGG - chr8_1:38811421-38811440 Msa1192800:intron 45.0%
GGGATAGCTAATTCACGACA+TGG + chr8_1:38811520-38811539 None:intergenic 45.0%
! AAGAGAAGGACTGTGCTGTT+AGG - chr8_1:38811665-38811684 Msa1192800:intron 45.0%
TTGCCTAAGTGCCTCTACTT+TGG - chr8_1:38812042-38812061 Msa1192800:CDS 45.0%
TGCCTAAGTGCCTCTACTTT+GGG - chr8_1:38812043-38812062 Msa1192800:CDS 45.0%
!! ATCCCAAAGTAGAGGCACTT+AGG + chr8_1:38812048-38812067 None:intergenic 45.0%
AGCATCAAATTGGTCCTGGA+AGG - chr8_1:38812245-38812264 Msa1192800:CDS 45.0%
GCAGGTGGAAGTTTGTAATC+TGG + chr8_1:38812513-38812532 None:intergenic 45.0%
CCCTCTAGTTAATGTGCTCA+AGG - chr8_1:38812565-38812584 Msa1192800:intron 45.0%
CCCTTGAGCACATTAACTAG+AGG + chr8_1:38812569-38812588 None:intergenic 45.0%
! AGCAGCTGCAAATGCTGATT+TGG + chr8_1:38813107-38813126 None:intergenic 45.0%
AACAGAAAGTCAGTACCGCA+GGG - chr8_1:38813128-38813147 Msa1192800:intron 45.0%
CTTCATTATAGCAGACCCTG+CGG + chr8_1:38813146-38813165 None:intergenic 45.0%
!! ACTAAAAGCACCAGTTACCC+AGG + chr8_1:38813194-38813213 None:intergenic 45.0%
!!! TAAGTTTTTTTTTTTTTTTT+TGG - chr8_1:38810070-38810089 Msa1192800:intron 5.0%
!!! TATATTTAAAATTTTATCAT+TGG - chr8_1:38812097-38812116 Msa1192800:intron 5.0%
AACTGGGGTGTGTGTTTGAG+AGG + chr8_1:38808211-38808230 None:intergenic 50.0%
TACACACTTAGAATCGCCCC+CGG - chr8_1:38808504-38808523 Msa1192800:CDS 50.0%
! ATGTAAAGGGGTAGCCTTGG+CGG - chr8_1:38809093-38809112 Msa1192800:intron 50.0%
CTAAAGCTCCTGCATACGCA+AGG + chr8_1:38809242-38809261 None:intergenic 50.0%
! ATGCAGGAGCTTTAGTGCAC+CGG - chr8_1:38809247-38809266 Msa1192800:CDS 50.0%
! GGGAGTGTATGATGCAGAGA+TGG - chr8_1:38809387-38809406 Msa1192800:intron 50.0%
! GTCTTGTTCAGATGCTCCCA+AGG + chr8_1:38809491-38809510 None:intergenic 50.0%
CGATAGTAGTACTGCCGTCT+CGG + chr8_1:38809730-38809749 None:intergenic 50.0%
CGAGACGGCAGTACTACTAT+CGG - chr8_1:38809728-38809747 Msa1192800:intron 50.0%
! GGCTCTTATGTTAGTGGGCA+AGG + chr8_1:38810708-38810727 None:intergenic 50.0%
GTGTCTACTGCACTTTCCTG+TGG + chr8_1:38811219-38811238 None:intergenic 50.0%
GGCTATAGGAGGAGAGACAA+AGG + chr8_1:38811447-38811466 None:intergenic 50.0%
TGGTCCTGGAAGGATGAAAC+TGG - chr8_1:38812255-38812274 Msa1192800:CDS 50.0%
! CAAACTTCCACCTGCTGCTT+TGG - chr8_1:38812518-38812537 Msa1192800:intron 50.0%
ACAGATGATGCCAAAGCAGC+AGG + chr8_1:38812531-38812550 None:intergenic 50.0%
! ACCAGGAGTTTTACCCTCAG+CGG + chr8_1:38812831-38812850 None:intergenic 50.0%
!! GTGGTGCTGACTCTGCTTTA+CGG - chr8_1:38812849-38812868 Msa1192800:intron 50.0%
!! TGCTGACTCTGCTTTACGGA+AGG - chr8_1:38812853-38812872 Msa1192800:intron 50.0%
TTTACGGAAGGCAGAGGATG+TGG - chr8_1:38812865-38812884 Msa1192800:intron 50.0%
AAATCCCTTCGCAAGCATGC+TGG + chr8_1:38812894-38812913 None:intergenic 50.0%
CCAGTTGAGTTCAACAGCCT+CGG - chr8_1:38812964-38812983 Msa1192800:intron 50.0%
GAACAGAAAGTCAGTACCGC+AGG - chr8_1:38813127-38813146 Msa1192800:intron 50.0%
ACTGGTACTACCTGGGTAAC+TGG - chr8_1:38813181-38813200 Msa1192800:intron 50.0%
AGTAAGGTTGCTAAGGCAGC+TGG - chr8_1:38813211-38813230 Msa1192800:intron 50.0%
GTAAGGTTGCTAAGGCAGCT+GGG - chr8_1:38813212-38813231 Msa1192800:intron 50.0%
TAAGGTTGCTAAGGCAGCTG+GGG - chr8_1:38813213-38813232 Msa1192800:intron 50.0%
AGTTGAAGACCAGTATGCGC+AGG - chr8_1:38813294-38813313 Msa1192800:intron 50.0%
!! ACTTGTTGCTGCGGCTTTTG+GGG + chr8_1:38813332-38813351 None:intergenic 50.0%
!! CACTTGTTGCTGCGGCTTTT+GGG + chr8_1:38813333-38813352 None:intergenic 50.0%
!! TCACTTGTTGCTGCGGCTTT+TGG + chr8_1:38813334-38813353 None:intergenic 50.0%
! GTGCAGTTCACTTGTTGCTG+CGG + chr8_1:38813341-38813360 None:intergenic 50.0%
ATCAAACCCTGAGCAGGTGT+AGG + chr8_1:38813373-38813392 None:intergenic 50.0%
CAAAGGATCAAACCCTGAGC+AGG + chr8_1:38813379-38813398 None:intergenic 50.0%
TTCGACTATCGTCGTGGTGG+TGG + chr8_1:38808099-38808118 None:intergenic 55.0%
GCTTTCGACTATCGTCGTGG+TGG + chr8_1:38808102-38808121 None:intergenic 55.0%
CGTGCTTTCGACTATCGTCG+TGG + chr8_1:38808105-38808124 None:intergenic 55.0%
! AGCGTAACGGCGTCGAAACT+GGG + chr8_1:38808227-38808246 None:intergenic 55.0%
! AAGCGTAACGGCGTCGAAAC+TGG + chr8_1:38808228-38808247 None:intergenic 55.0%
!! CAACTTTACCGGTTCCGCCA+AGG + chr8_1:38809110-38809129 None:intergenic 55.0%
!! CGGAAAGGGGTACCACCATT+TGG + chr8_1:38809217-38809236 None:intergenic 55.0%
CATACGCAAGGTGCGGAAAG+GGG + chr8_1:38809230-38809249 None:intergenic 55.0%
GCATACGCAAGGTGCGGAAA+GGG + chr8_1:38809231-38809250 None:intergenic 55.0%
TGCATACGCAAGGTGCGGAA+AGG + chr8_1:38809232-38809251 None:intergenic 55.0%
TTTCCGCACCTTGCGTATGC+AGG - chr8_1:38809231-38809250 Msa1192800:CDS 55.0%
! TGCAGGAGCTTTAGTGCACC+GGG - chr8_1:38809248-38809267 Msa1192800:CDS 55.0%
CTCTGCATCATACACTCCCG+TGG + chr8_1:38809386-38809405 None:intergenic 55.0%
! GCAGAGATGGGTTCTCCACA+AGG - chr8_1:38809400-38809419 Msa1192800:intron 55.0%
GGTCAGTGAGTTGCTGTGCT+TGG - chr8_1:38809563-38809582 Msa1192800:intron 55.0%
AGGAGAGACAAAGGCCGAGA+AGG + chr8_1:38811438-38811457 None:intergenic 55.0%
GCAGCCAGTTTCATCCTTCC+AGG + chr8_1:38812262-38812281 None:intergenic 55.0%
GATGATGCCAAAGCAGCAGG+TGG + chr8_1:38812528-38812547 None:intergenic 55.0%
GCTGAGGGTAAAACTCCTGG+TGG - chr8_1:38812830-38812849 Msa1192800:intron 55.0%
AAAGCAGAGTCAGCACCACC+AGG + chr8_1:38812848-38812867 None:intergenic 55.0%
CTCTGCTTTACGGAAGGCAG+AGG - chr8_1:38812859-38812878 Msa1192800:intron 55.0%
GTCACCAGCATGCTTGCGAA+GGG - chr8_1:38812887-38812906 Msa1192800:intron 55.0%
CCGAGGCTGTTGAACTCAAC+TGG + chr8_1:38812967-38812986 None:intergenic 55.0%
GCTGGTGCATCAGTTGTGAG+TGG - chr8_1:38813037-38813056 Msa1192800:intron 55.0%
CCAGTATGCGCAGGTCCTTT+CGG - chr8_1:38813303-38813322 Msa1192800:intron 55.0%
TTCCAAGCCTACACCTGCTC+AGG - chr8_1:38813363-38813382 Msa1192800:intron 55.0%
TCCAAGCCTACACCTGCTCA+GGG - chr8_1:38813364-38813383 Msa1192800:intron 55.0%
!! GACTATCGTCGTGGTGGTGG+TGG + chr8_1:38808096-38808115 None:intergenic 60.0%
! GCGTAACGGCGTCGAAACTG+GGG + chr8_1:38808226-38808245 None:intergenic 60.0%
GCTCCTGCATACGCAAGGTG+CGG + chr8_1:38809237-38809256 None:intergenic 60.0%
!! GGATCCACAAGGTGCCGAGA+CGG - chr8_1:38809713-38809732 Msa1192800:intron 60.0%
GCCGCTGAGGGTAAAACTCC+TGG - chr8_1:38812827-38812846 Msa1192800:intron 60.0%
GGTCACCAGCATGCTTGCGA+AGG - chr8_1:38812886-38812905 Msa1192800:intron 60.0%
GCTAAGGCAGCTGGGGATGT+AGG - chr8_1:38813220-38813239 Msa1192800:intron 60.0%
CCGAAAGGACCTGCGCATAC+TGG + chr8_1:38813306-38813325 None:intergenic 60.0%
!! CGGCTTTTGGGGACTCCGAA+AGG + chr8_1:38813321-38813340 None:intergenic 60.0%
ACCCTGAGCAGGTGTAGGCT+TGG + chr8_1:38813368-38813387 None:intergenic 60.0%
! AGGGGTAGCCTTGGCGGAAC+CGG - chr8_1:38809099-38809118 Msa1192800:intron 65.0%
ACTGCCGTCTCGGCACCTTG+TGG + chr8_1:38809720-38809739 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 38808078 38813689 38808078 ID=Msa1192800;Name=Msa1192800
chr8_1 mRNA 38808078 38813689 38808078 ID=Msa1192800-mRNA-1;Parent=Msa1192800;Name=Msa1192800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=267|1|1|1|0.75|0.8|5|290|295
chr8_1 exon 38808078 38808940 38808078 ID=Msa1192800-mRNA-1:exon:12709;Parent=Msa1192800-mRNA-1
chr8_1 exon 38809219 38809299 38809219 ID=Msa1192800-mRNA-1:exon:12708;Parent=Msa1192800-mRNA-1
chr8_1 exon 38812018 38812093 38812018 ID=Msa1192800-mRNA-1:exon:12707;Parent=Msa1192800-mRNA-1
chr8_1 exon 38812204 38812444 38812204 ID=Msa1192800-mRNA-1:exon:12706;Parent=Msa1192800-mRNA-1
chr8_1 exon 38813506 38813689 38813506 ID=Msa1192800-mRNA-1:exon:12705;Parent=Msa1192800-mRNA-1
chr8_1 five_prime_UTR 38813506 38813689 38813506 ID=Msa1192800-mRNA-1:five_prime_utr;Parent=Msa1192800-mRNA-1
chr8_1 five_prime_UTR 38812362 38812444 38812362 ID=Msa1192800-mRNA-1:five_prime_utr;Parent=Msa1192800-mRNA-1
chr8_1 CDS 38812204 38812361 38812204 ID=Msa1192800-mRNA-1:cds;Parent=Msa1192800-mRNA-1
chr8_1 CDS 38812018 38812093 38812018 ID=Msa1192800-mRNA-1:cds;Parent=Msa1192800-mRNA-1
chr8_1 CDS 38809219 38809299 38809219 ID=Msa1192800-mRNA-1:cds;Parent=Msa1192800-mRNA-1
chr8_1 CDS 38808368 38808940 38808368 ID=Msa1192800-mRNA-1:cds;Parent=Msa1192800-mRNA-1
chr8_1 three_prime_UTR 38808078 38808367 38808078 ID=Msa1192800-mRNA-1:three_prime_utr;Parent=Msa1192800-mRNA-1
Gene Sequence

>Msa1192800

ATGGGTTCTCCACAAGGTTCTAAACGTTCAGTGTTACATGTATTTTATTTGCAGGTCAAAACTATAAAAGTCGGTAATGTTTCCTTGGGAGCATCTGAACAAGACCTAAAGGAGTTCTTTTCATTTTCTGGTGACATTGAATATGTTGAAATGAAAAGCTACGATGAACGATCTCAAATTGCCTTTGTTACTTTCAAGGATCCACAAGGTGCCGAGACGGCAGTACTACTATCGGGGGCAACAATAGTTGATTTGTCAGTTAACATAACTCTGGATCCAGATTACAAACTTCCACCTGCTGCTTTGGCATCATCTGCCGCTGAGGGTAAAACTCCTGGTGGTGCTGACTCTGCTTTACGGAAGGCAGAGGATGTGGTCACCAGCATGCTTGCGAAGGGATTTATCTTAGGGAAAGATGCTGTGAACAAAGCAAAGGGTTTTGATGAGAAGCACCAGTTGAGTTCAACAGCCTCGGCGAAAGTTACATCTTTTGACCAAAAACTTGGGCTTAGTGAGAAATTAACTGCTGGTGCATCAGTTGTGAGTGGTAGAGTTAAAGAAGTGGATCAGAAGTTTCAGGTTTCAGAAAAGACCAAATCAGCATTTGCAGCTGCTGAACAGAAAGTCAGTACCGCAGGGTCTGCTATAATGAAGAATCGCTATATACTCACTGGTACTACCTGGGTAACTGGTGCTTTTAGTAAGGTTGCTAAGGCAGCTGGGGATGTAGGACAGAAAACAAAAGAGAAAGTGGAAAATGCAGAAGTGGAACATAATCGTAAAGTTGAAGACCAGTATGCGCAGGTCCTTTCGGAGTCCCCAAAAGCCGCAGCAACAAGTGAACTGCACTCTTCCAAGCCTACACCTGCTCAGGGTTTGATCCTTTGA

Protein sequence

>Msa1192800

MGSPQGSKRSVLHVFYLQVKTIKVGNVSLGASEQDLKEFFSFSGDIEYVEMKSYDERSQIAFVTFKDPQGAETAVLLSGATIVDLSVNITLDPDYKLPPAALASSAAEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHQLSSTASAKVTSFDQKLGLSEKLTAGASVVSGRVKEVDQKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYILTGTTWVTGAFSKVAKAAGDVGQKTKEKVENAEVEHNRKVEDQYAQVLSESPKAAATSELHSSKPTPAQGLIL*