Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228490 | XP_013443870.1 | 100.000 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 3.37e-104 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228490 | sp|P47922|NDK1_PEA | 93.289 | 149 | 10 | 0 | 1 | 149 | 1 | 149 | 1.41e-101 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228490 | A0A072TWL0 | 100.000 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 1.61e-104 | 304 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0683660 | Msa1228490 | 0.805094 | 1.575947e-49 | -8.615850e-47 |
| Msa0781080 | Msa1228490 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
| Msa0827380 | Msa1228490 | 0.842315 | 2.787878e-58 | -8.615850e-47 |
| Msa0138890 | Msa1228490 | 0.810532 | 1.099830e-50 | -8.615850e-47 |
| Msa0197980 | Msa1228490 | 0.806533 | 7.854208e-50 | -8.615850e-47 |
| Msa1228490 | Msa1271710 | 0.914273 | 2.327157e-84 | -8.615850e-47 |
| Msa1228490 | Msa1368920 | 0.808243 | 3.408859e-50 | -8.615850e-47 |
| Msa1228490 | Msa1406080 | 0.821380 | 4.163863e-53 | -8.615850e-47 |
| Msa1021120 | Msa1228490 | 0.808586 | 2.879112e-50 | -8.615850e-47 |
| Msa1037290 | Msa1228490 | 0.808477 | 3.038436e-50 | -8.615850e-47 |
| Msa1096900 | Msa1228490 | 0.824609 | 7.355913e-54 | -8.615850e-47 |
| Msa0301220 | Msa1228490 | 0.804249 | 2.365265e-49 | -8.615850e-47 |
| Msa1218170 | Msa1228490 | 0.801298 | 9.618448e-49 | -8.615850e-47 |
| Msa0596370 | Msa1228490 | 0.804547 | 2.049637e-49 | -8.615850e-47 |
| Msa0861320 | Msa1228490 | 0.834102 | 3.639457e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228490 | MtrunA17_Chr8g0335791 | 100.000 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 3.10e-108 | 304 |
| Msa1228490 | MtrunA17_Chr4g0057901 | 64.865 | 148 | 51 | 1 | 3 | 149 | 83 | 230 | 1.19e-66 | 202 |
| Msa1228490 | MtrunA17_Chr8g0388131 | 59.184 | 147 | 59 | 1 | 3 | 148 | 85 | 231 | 2.88e-62 | 191 |
| Msa1228490 | MtrunA17_Chr8g0344421 | 34.074 | 135 | 86 | 1 | 3 | 134 | 34 | 168 | 2.50e-24 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228490 | AT4G09320.1 | 83.673 | 147 | 24 | 0 | 3 | 149 | 2 | 148 | 1.81e-91 | 262 |
| Msa1228490 | AT5G63310.1 | 63.514 | 148 | 53 | 1 | 3 | 149 | 84 | 231 | 9.57e-67 | 202 |
| Msa1228490 | AT4G11010.1 | 59.184 | 147 | 59 | 1 | 3 | 148 | 89 | 235 | 2.87e-62 | 191 |
| Msa1228490 | AT4G23900.1 | 59.864 | 147 | 58 | 1 | 3 | 148 | 88 | 234 | 3.32e-62 | 191 |
| Msa1228490 | AT4G23895.3 | 59.864 | 147 | 58 | 1 | 3 | 148 | 318 | 464 | 5.81e-60 | 192 |
| Msa1228490 | AT1G17410.1 | 35.556 | 135 | 84 | 1 | 3 | 134 | 33 | 167 | 1.46e-22 | 88.6 |
| Msa1228490 | AT1G17410.2 | 35.385 | 130 | 81 | 1 | 8 | 134 | 1 | 130 | 2.33e-21 | 84.3 |
| Msa1228490 | AT1G17410.3 | 34.066 | 91 | 60 | 0 | 8 | 98 | 1 | 91 | 3.95e-12 | 60.1 |
Find 73 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATCTGAACTTGAAGTTT+TGG | 0.248011 | 8_2:-3928790 | Msa1228490:three_prime_UTR |
| TTCCAGCAAAGGATCAAAAT+AGG | 0.255262 | 8_2:+3928901 | None:intergenic |
| CGGTTGCTGTTGTTGCTGTT+TGG | 0.275481 | 8_2:+3930949 | None:intergenic |
| GAAAGCGCCAACAAGGAAAT+TGG | 0.280936 | 8_2:-3929018 | Msa1228490:CDS |
| CCCTGTTGTTGCCATGATTT+GGG | 0.284074 | 8_2:-3929750 | Msa1228490:CDS |
| GCCCTGTTGTTGCCATGATT+TGG | 0.311298 | 8_2:-3929751 | Msa1228490:CDS |
| GCCATCTTGATTTCTCTGTT+TGG | 0.335715 | 8_2:+3930917 | None:intergenic |
| GGTTGCTGTTGTTGCTGTTT+GGG | 0.343549 | 8_2:+3930950 | None:intergenic |
| GCAAATTCCCGATCAACTTC+AGG | 0.343910 | 8_2:+3928924 | None:intergenic |
| CCACAAACCAATTTCCTTGT+TGG | 0.361994 | 8_2:+3929011 | None:intergenic |
| TGTGGTGGTGTGAGAGGAAA+GGG | 0.366610 | 8_2:+3930986 | None:intergenic |
| TATCAGCAGGTTTGAGAAGA+AGG | 0.368456 | 8_2:-3930450 | Msa1228490:CDS |
| TCCCAAATCATGGCAACAAC+AGG | 0.371495 | 8_2:+3929749 | None:intergenic |
| GGTGACTTTGCTGTTGAGAT+TGG | 0.374163 | 8_2:-3929647 | Msa1228490:CDS |
| CCGATAAATTAAAATAATAA+TGG | 0.378171 | 8_2:+3928699 | None:intergenic |
| TGAAAGTGAAATTAGGGTTA+AGG | 0.384796 | 8_2:-3931034 | Msa1228490:five_prime_UTR |
| TGCCATGCAGCAGGTCCCTC+AGG | 0.393989 | 8_2:+3928985 | None:intergenic |
| TTTATGAGTGTTTGATGCCT+TGG | 0.398099 | 8_2:-3928877 | Msa1228490:three_prime_UTR |
| AGGCTGCTTTGCCATGCAGC+AGG | 0.417205 | 8_2:+3928976 | None:intergenic |
| TCTCTGTTTGGTATTGAGTT+CGG | 0.423596 | 8_2:+3930929 | None:intergenic |
| TGATGCAGGAACGTTATTCA+TGG | 0.430285 | 8_2:-3929054 | Msa1228490:intron |
| GACAGATCCCTTAGGTTGGT+TGG | 0.438255 | 8_2:-3928559 | Msa1228490:three_prime_UTR |
| CTCAGATTGAGCAGGGTTTG+TGG | 0.440349 | 8_2:+3929685 | None:intergenic |
| ACAACTGGCAGAAAGATTAT+TGG | 0.443417 | 8_2:-3929710 | Msa1228490:CDS |
| GGGAAGAATGTTGTGACAAC+TGG | 0.448668 | 8_2:-3929725 | Msa1228490:CDS |
| TCCAGCAAAGGATCAAAATA+GGG | 0.449640 | 8_2:+3928902 | None:intergenic |
| CCAACAAGGAAATTGGTTTG+TGG | 0.455431 | 8_2:-3929011 | Msa1228490:CDS |
| AAGTCACCACGAATAGTTCC+AGG | 0.456893 | 8_2:+3929662 | None:intergenic |
| GTGACTTTGCTGTTGAGATT+GGG | 0.461283 | 8_2:-3929646 | Msa1228490:CDS |
| ATTCTTCCCTTCCCAAATCA+TGG | 0.462620 | 8_2:+3929739 | None:intergenic |
| TGGTGGTGTGAGAGGAAAGG+GGG | 0.468982 | 8_2:+3930988 | None:intergenic |
| AGATAAACCTGAAGTTGATC+GGG | 0.475647 | 8_2:-3928931 | Msa1228490:three_prime_UTR |
| AGTCCTCTTTGAACTCCATC+AGG | 0.479734 | 8_2:+3930869 | None:intergenic |
| GTGTGGTGGTGTGAGAGGAA+AGG | 0.488846 | 8_2:+3930985 | None:intergenic |
| TTGGTAGAGTACATTGTCTC+TGG | 0.492742 | 8_2:-3929773 | Msa1228490:CDS |
| TCTGAGCCTGGAACTATTCG+TGG | 0.495457 | 8_2:-3929668 | Msa1228490:CDS |
| AAGATAAACCTGAAGTTGAT+CGG | 0.501734 | 8_2:-3928932 | Msa1228490:three_prime_UTR |
| TGATAGTTCCAACCAACCTA+AGG | 0.504958 | 8_2:+3928551 | None:intergenic |
| TCTACCAATCCGCTGAAGAA+AGG | 0.506686 | 8_2:+3929788 | None:intergenic |
| AAGAAGGGTTTCTACTTGAA+AGG | 0.507643 | 8_2:-3930434 | Msa1228490:intron |
| AACCCTGCTCAATCTGAGCC+TGG | 0.508261 | 8_2:-3929680 | Msa1228490:CDS |
| GTTCCAGGCTCAGATTGAGC+AGG | 0.508318 | 8_2:+3929677 | None:intergenic |
| TATAAGTGCAACCACATCAA+TGG | 0.514650 | 8_2:+3928727 | None:intergenic |
| TTTGCATAGACAGATCCCTT+AGG | 0.521901 | 8_2:-3928567 | Msa1228490:three_prime_UTR |
| TCTGCAAAGCCTTTCTTCAG+CGG | 0.530736 | 8_2:-3929797 | Msa1228490:CDS |
| AAAGCCTTTCTTCAGCGGAT+TGG | 0.536682 | 8_2:-3929792 | Msa1228490:CDS |
| ATCAGCAGGTTTGAGAAGAA+GGG | 0.548918 | 8_2:-3930449 | Msa1228490:CDS |
| ATTGGTTTGTGGTTCCCTGA+GGG | 0.548939 | 8_2:-3929000 | Msa1228490:CDS |
| TTCATCATGATCAAGCCTGA+TGG | 0.549192 | 8_2:-3930884 | Msa1228490:CDS |
| CATAGACAGATCCCTTAGGT+TGG | 0.549764 | 8_2:-3928563 | Msa1228490:three_prime_UTR |
| GGCAAAGCAGCCTCCACTCG+TGG | 0.563561 | 8_2:-3928966 | Msa1228490:CDS |
| GGTGGTGTGAGAGGAAAGGG+GGG | 0.566114 | 8_2:+3930989 | None:intergenic |
| TTCCAGGCTCAGATTGAGCA+GGG | 0.574819 | 8_2:+3929678 | None:intergenic |
| CACTCATAAAGTTCCAGCAA+AGG | 0.585680 | 8_2:+3928890 | None:intergenic |
| GCCATGCAGCAGGTCCCTCA+GGG | 0.586568 | 8_2:+3928986 | None:intergenic |
| GATAGTTCCAACCAACCTAA+GGG | 0.588934 | 8_2:+3928552 | None:intergenic |
| AGGTTGGTGAGATTATCAGC+AGG | 0.589081 | 8_2:-3930463 | Msa1228490:CDS |
| TTCTGTTGAAAGCGCCAACA+AGG | 0.589117 | 8_2:-3929025 | Msa1228490:CDS |
| GTGATGTGTGGTGGTGTGAG+AGG | 0.590503 | 8_2:+3930980 | None:intergenic |
| GGAGAGAGTGTGATGTGTGG+TGG | 0.595925 | 8_2:+3930971 | None:intergenic |
| GTTGTTGCCATGATTTGGGA+AGG | 0.598008 | 8_2:-3929746 | Msa1228490:CDS |
| ACTTTGCTGTTGAGATTGGG+AGG | 0.598896 | 8_2:-3929643 | Msa1228490:intron |
| ACTCGTAAATCCACGAGTGG+AGG | 0.617859 | 8_2:+3928956 | None:intergenic |
| CCCAAATCATGGCAACAACA+GGG | 0.626477 | 8_2:+3929750 | None:intergenic |
| GTGGTGGTGTGAGAGGAAAG+GGG | 0.627876 | 8_2:+3930987 | None:intergenic |
| ACCAAACAGAGAAATCAAGA+TGG | 0.632343 | 8_2:-3930918 | Msa1228490:exon |
| TTGTTGCCATGATTTGGGAA+GGG | 0.646062 | 8_2:-3929745 | Msa1228490:CDS |
| AATTGGTTTGTGGTTCCCTG+AGG | 0.646541 | 8_2:-3929001 | Msa1228490:CDS |
| AAGCCTGATGGAGTTCAAAG+AGG | 0.651287 | 8_2:-3930872 | Msa1228490:CDS |
| GATACTTAAAACTTGTGTTG+TGG | 0.652801 | 8_2:-3928665 | Msa1228490:three_prime_UTR |
| TTGGGAGAGAGTGTGATGTG+TGG | 0.657214 | 8_2:+3930968 | None:intergenic |
| TAGACTTAACATCAAAACCA+AGG | 0.662366 | 8_2:+3928860 | None:intergenic |
| TTTACTCGTAAATCCACGAG+TGG | 0.672996 | 8_2:+3928953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAAATATTTGAAG+TGG | - | chr8_2:3928879-3928898 | Msa1228490:three_prime_UTR | 10.0% |
| !!! | TTTTTTAAAATATTTGAAGT+GGG | - | chr8_2:3928880-3928899 | Msa1228490:three_prime_UTR | 10.0% |
| !!! | CCATTATTATTTTAATTTAT+CGG | - | chr8_2:3930859-3930878 | Msa1228490:intron | 10.0% |
| !!! | AAAAAAAACGAAATTTTGAT+AGG | + | chr8_2:3928861-3928880 | None:intergenic | 15.0% |
| !!! | ATTCTGGATTTTAAAATATT+TGG | - | chr8_2:3929585-3929604 | Msa1228490:intron | 15.0% |
| !!! | CAGTTAAAATTTAAAACAAA+TGG | + | chr8_2:3929994-3930013 | None:intergenic | 15.0% |
| !!! | TGTTTTGAAAAAAAATATCA+AGG | + | chr8_2:3930128-3930147 | None:intergenic | 15.0% |
| !! | CCGATAAATTAAAATAATAA+TGG | + | chr8_2:3930862-3930881 | None:intergenic | 15.0% |
| !! | CAGATAATAATAACCAAATA+AGG | + | chr8_2:3928824-3928843 | None:intergenic | 20.0% |
| !! | TTTAGCTAAATTTATTTGTG+TGG | - | chr8_2:3929003-3929022 | Msa1228490:CDS | 20.0% |
| !!! | TTTGATACTTCTAAAATTTC+AGG | - | chr8_2:3929559-3929578 | Msa1228490:intron | 20.0% |
| !! | CAAAATAAAAAATGAACGAT+AGG | + | chr8_2:3930803-3930822 | None:intergenic | 20.0% |
| !! | GTTTTGTGAAAGTGAAATTA+GGG | - | chr8_2:3928518-3928537 | Msa1228490:three_prime_UTR | 25.0% |
| ! | GAATTGTGAATCAAAAAAAG+AGG | + | chr8_2:3928736-3928755 | None:intergenic | 25.0% |
| ! | CGTAATAAATCATCCTTATT+TGG | - | chr8_2:3928808-3928827 | Msa1228490:three_prime_UTR | 25.0% |
| ! | ACTAAAAGTTAGTATGCTAA+GGG | + | chr8_2:3929153-3929172 | None:intergenic | 25.0% |
| ! | AACTAAAAGTTAGTATGCTA+AGG | + | chr8_2:3929154-3929173 | None:intergenic | 25.0% |
| ! | CTTTGAATTTCAAAACAATC+AGG | + | chr8_2:3929488-3929507 | None:intergenic | 25.0% |
| !!! | TGTTTTGAAATTCAAAGTTG+AGG | - | chr8_2:3929491-3929510 | Msa1228490:intron | 25.0% |
| ! | TTGAAAATCAACATTTGGAA+AGG | + | chr8_2:3929521-3929540 | None:intergenic | 25.0% |
| ! | TACACTTGAAAATCAACATT+TGG | + | chr8_2:3929526-3929545 | None:intergenic | 25.0% |
| !!! | CACTTTGAAATTATTTGTGA+TGG | - | chr8_2:3929655-3929674 | Msa1228490:CDS | 25.0% |
| !!! | AGGTTTGAAATTTTTGAATG+TGG | - | chr8_2:3929703-3929722 | Msa1228490:CDS | 25.0% |
| ! | TAAAATCAAGTCTTAAGAAC+AGG | + | chr8_2:3930086-3930105 | None:intergenic | 25.0% |
| !!! | GTTTTGATTGACTTAAAACA+TGG | + | chr8_2:3930163-3930182 | None:intergenic | 25.0% |
| ! | ATAAAACTTAGATAAGAGCT+TGG | - | chr8_2:3930223-3930242 | Msa1228490:intron | 25.0% |
| !! | CAAGTTTTCAAATCAAACAA+TGG | + | chr8_2:3930365-3930384 | None:intergenic | 25.0% |
| !!! | CTTGATTTTAAGTTACAGAA+TGG | - | chr8_2:3930461-3930480 | Msa1228490:CDS | 25.0% |
| !!! | ATTTTAATCACTATTGATGC+AGG | - | chr8_2:3930490-3930509 | Msa1228490:intron | 25.0% |
| !! | TTAATCTGAACTTGAAGTTT+TGG | - | chr8_2:3930768-3930787 | Msa1228490:intron | 25.0% |
| !!! | ATTTTAATTTATCGGTTGTG+AGG | - | chr8_2:3930867-3930886 | Msa1228490:intron | 25.0% |
| !!! | GGTGTTTTGTTGTATAATTT+TGG | - | chr8_2:3930914-3930933 | Msa1228490:exon | 25.0% |
| !! | GCAAATGTGTATTCTAAAAA+AGG | + | chr8_2:3930976-3930995 | None:intergenic | 25.0% |
| ! | CGTTTTGTGAAAGTGAAATT+AGG | - | chr8_2:3928517-3928536 | Msa1228490:three_prime_UTR | 30.0% |
| TGAAAGTGAAATTAGGGTTA+AGG | - | chr8_2:3928524-3928543 | Msa1228490:three_prime_UTR | 30.0% | |
| ATGCTTGACTGTTTAGAAAA+TGG | - | chr8_2:3928940-3928959 | Msa1228490:exon | 30.0% | |
| TGCTTGACTGTTTAGAAAAT+GGG | - | chr8_2:3928941-3928960 | Msa1228490:exon | 30.0% | |
| !! | TAGAAAATGGGTTGATTTGT+TGG | - | chr8_2:3928953-3928972 | Msa1228490:exon | 30.0% |
| TTTGTTTGATGCTGAAAGTT+TGG | - | chr8_2:3929044-3929063 | Msa1228490:CDS | 30.0% | |
| GACTGAAAAATTTGTGTTTC+AGG | - | chr8_2:3929075-3929094 | Msa1228490:intron | 30.0% | |
| ! | GAAAAATTTGTGTTTCAGGT+TGG | - | chr8_2:3929079-3929098 | Msa1228490:intron | 30.0% |
| CTAACAATCACTCACTTATT+GGG | + | chr8_2:3929402-3929421 | None:intergenic | 30.0% | |
| TCTAACAATCACTCACTTAT+TGG | + | chr8_2:3929403-3929422 | None:intergenic | 30.0% | |
| ! | CTAAAATTTCAGGTCAATTC+TGG | - | chr8_2:3929569-3929588 | Msa1228490:intron | 30.0% |
| ! | TGATTGACTTAAAACATGGA+AGG | + | chr8_2:3930159-3930178 | None:intergenic | 30.0% |
| AAGTATCATTGTTAGACATG+AGG | + | chr8_2:3930185-3930204 | None:intergenic | 30.0% | |
| TATCCTTACCAATAGCTAAT+AGG | - | chr8_2:3930246-3930265 | Msa1228490:intron | 30.0% | |
| AATAAGCACCTATTAGCTAT+TGG | + | chr8_2:3930257-3930276 | None:intergenic | 30.0% | |
| AATAGATGATGTTTGATGCT+GGG | + | chr8_2:3930308-3930327 | None:intergenic | 30.0% | |
| AAATAGATGATGTTTGATGC+TGG | + | chr8_2:3930309-3930328 | None:intergenic | 30.0% | |
| AGCATCAAACATCATCTATT+TGG | - | chr8_2:3930308-3930327 | Msa1228490:intron | 30.0% | |
| !! | GAGCACTTTTGATTAGTTAA+GGG | + | chr8_2:3930423-3930442 | None:intergenic | 30.0% |
| !! | AGAGCACTTTTGATTAGTTA+AGG | + | chr8_2:3930424-3930443 | None:intergenic | 30.0% |
| ! | AAGATAAACCTGAAGTTGAT+CGG | - | chr8_2:3930626-3930645 | Msa1228490:intron | 30.0% |
| TAGACTTAACATCAAAACCA+AGG | + | chr8_2:3930701-3930720 | None:intergenic | 30.0% | |
| GATACTTAAAACTTGTGTTG+TGG | - | chr8_2:3930893-3930912 | Msa1228490:CDS | 30.0% | |
| !! | TGTTGTATAATTTTGGTACG+TGG | - | chr8_2:3930921-3930940 | Msa1228490:exon | 30.0% |
| ! | TCTCTGTTTGGTATTGAGTT+CGG | + | chr8_2:3928632-3928651 | None:intergenic | 35.0% |
| ACCAAACAGAGAAATCAAGA+TGG | - | chr8_2:3928640-3928659 | Msa1228490:three_prime_UTR | 35.0% | |
| ! | AAAAAAGAGGTGTGAGAGAA+GGG | + | chr8_2:3928723-3928742 | None:intergenic | 35.0% |
| ! | AAAAAAAGAGGTGTGAGAGA+AGG | + | chr8_2:3928724-3928743 | None:intergenic | 35.0% |
| AAGAAGGGTTTCTACTTGAA+AGG | - | chr8_2:3929124-3929143 | Msa1228490:intron | 35.0% | |
| TGATCAGAGAACAAAACAAC+AGG | + | chr8_2:3929195-3929214 | None:intergenic | 35.0% | |
| TGAGATCCATTTCCAAAGTT+TGG | - | chr8_2:3929361-3929380 | Msa1228490:intron | 35.0% | |
| GAGATCCATTTCCAAAGTTT+GGG | - | chr8_2:3929362-3929381 | Msa1228490:intron | 35.0% | |
| ! | ACATATCAATTGAGAAGTGC+TGG | + | chr8_2:3929444-3929463 | None:intergenic | 35.0% |
| ACAACTGGCAGAAAGATTAT+TGG | - | chr8_2:3929848-3929867 | Msa1228490:CDS | 35.0% | |
| CGTCTAGTATAGTGAATTGT+AGG | - | chr8_2:3930052-3930071 | Msa1228490:intron | 35.0% | |
| ATATCAAGGTGACTTACATG+AGG | + | chr8_2:3930114-3930133 | None:intergenic | 35.0% | |
| ! | AGATAAACCTGAAGTTGATC+GGG | - | chr8_2:3930627-3930646 | Msa1228490:intron | 35.0% |
| TCCAGCAAAGGATCAAAATA+GGG | + | chr8_2:3930659-3930678 | None:intergenic | 35.0% | |
| TTCCAGCAAAGGATCAAAAT+AGG | + | chr8_2:3930660-3930679 | None:intergenic | 35.0% | |
| TTTATGAGTGTTTGATGCCT+TGG | - | chr8_2:3930681-3930700 | Msa1228490:intron | 35.0% | |
| !!! | CTGAACTTGAAGTTTTGGTT+TGG | - | chr8_2:3930773-3930792 | Msa1228490:intron | 35.0% |
| TATAAGTGCAACCACATCAA+TGG | + | chr8_2:3930834-3930853 | None:intergenic | 35.0% | |
| AGGAAAGGGGGGTTTATATA+TGG | + | chr8_2:3928561-3928580 | None:intergenic | 40.0% | |
| GCCATCTTGATTTCTCTGTT+TGG | + | chr8_2:3928644-3928663 | None:intergenic | 40.0% | |
| TTCATCATGATCAAGCCTGA+TGG | - | chr8_2:3928674-3928693 | Msa1228490:three_prime_UTR | 40.0% | |
| TATCAGCAGGTTTGAGAAGA+AGG | - | chr8_2:3929108-3929127 | Msa1228490:intron | 40.0% | |
| ATCAGCAGGTTTGAGAAGAA+GGG | - | chr8_2:3929109-3929128 | Msa1228490:intron | 40.0% | |
| ! | TGGATCCCAAACTTTGGAAA+TGG | + | chr8_2:3929370-3929389 | None:intergenic | 40.0% |
| TGGTGAATGATTCTTGAGAC+TGG | - | chr8_2:3929675-3929694 | Msa1228490:CDS | 40.0% | |
| TTGGTAGAGTACATTGTCTC+TGG | - | chr8_2:3929785-3929804 | Msa1228490:CDS | 40.0% | |
| ! | TTGTTGCCATGATTTGGGAA+GGG | - | chr8_2:3929813-3929832 | Msa1228490:CDS | 40.0% |
| ATTCTTCCCTTCCCAAATCA+TGG | + | chr8_2:3929822-3929841 | None:intergenic | 40.0% | |
| !! | GTGACTTTGCTGTTGAGATT+GGG | - | chr8_2:3929912-3929931 | Msa1228490:intron | 40.0% |
| GCACCTATTAGCTATTGGTA+AGG | + | chr8_2:3930252-3930271 | None:intergenic | 40.0% | |
| ATTAGTTAAGGGACAGAGCT+TGG | + | chr8_2:3930412-3930431 | None:intergenic | 40.0% | |
| TGATGCAGGAACGTTATTCA+TGG | - | chr8_2:3930504-3930523 | Msa1228490:intron | 40.0% | |
| CCACAAACCAATTTCCTTGT+TGG | + | chr8_2:3930550-3930569 | None:intergenic | 40.0% | |
| !! | CCAACAAGGAAATTGGTTTG+TGG | - | chr8_2:3930547-3930566 | Msa1228490:intron | 40.0% |
| TTTACTCGTAAATCCACGAG+TGG | + | chr8_2:3930608-3930627 | None:intergenic | 40.0% | |
| CACTCATAAAGTTCCAGCAA+AGG | + | chr8_2:3930671-3930690 | None:intergenic | 40.0% | |
| !! | TTGCGTTTTAGCCATTGATG+TGG | - | chr8_2:3930820-3930839 | Msa1228490:intron | 40.0% |
| TTTGCATAGACAGATCCCTT+AGG | - | chr8_2:3930991-3931010 | Msa1228490:five_prime_UTR | 40.0% | |
| GATAGTTCCAACCAACCTAA+GGG | + | chr8_2:3931009-3931028 | None:intergenic | 40.0% | |
| TGATAGTTCCAACCAACCTA+AGG | + | chr8_2:3931010-3931029 | None:intergenic | 40.0% | |
| !! | GGTTGCTGTTGTTGCTGTTT+GGG | + | chr8_2:3928611-3928630 | None:intergenic | 45.0% |
| AAGCCTGATGGAGTTCAAAG+AGG | - | chr8_2:3928686-3928705 | Msa1228490:three_prime_UTR | 45.0% | |
| AGTCCTCTTTGAACTCCATC+AGG | + | chr8_2:3928692-3928711 | None:intergenic | 45.0% | |
| !! | AGGTTGGTGAGATTATCAGC+AGG | - | chr8_2:3929095-3929114 | Msa1228490:intron | 45.0% |
| AACTCGTGGATCCCAAACTT+TGG | + | chr8_2:3929376-3929395 | None:intergenic | 45.0% | |
| CACTTATTGGGTGAAACTCG+TGG | + | chr8_2:3929390-3929409 | None:intergenic | 45.0% | |
| GATTCTTGAGACTGGACTTC+AGG | - | chr8_2:3929683-3929702 | Msa1228490:CDS | 45.0% | |
| TCTGCAAAGCCTTTCTTCAG+CGG | - | chr8_2:3929761-3929780 | Msa1228490:CDS | 45.0% | |
| AAAGCCTTTCTTCAGCGGAT+TGG | - | chr8_2:3929766-3929785 | Msa1228490:CDS | 45.0% | |
| TCTACCAATCCGCTGAAGAA+AGG | + | chr8_2:3929773-3929792 | None:intergenic | 45.0% | |
| CCCAAATCATGGCAACAACA+GGG | + | chr8_2:3929811-3929830 | None:intergenic | 45.0% | |
| CCCTGTTGTTGCCATGATTT+GGG | - | chr8_2:3929808-3929827 | Msa1228490:CDS | 45.0% | |
| TCCCAAATCATGGCAACAAC+AGG | + | chr8_2:3929812-3929831 | None:intergenic | 45.0% | |
| ! | GTTGTTGCCATGATTTGGGA+AGG | - | chr8_2:3929812-3929831 | Msa1228490:CDS | 45.0% |
| GGGAAGAATGTTGTGACAAC+TGG | - | chr8_2:3929833-3929852 | Msa1228490:CDS | 45.0% | |
| AAGTCACCACGAATAGTTCC+AGG | + | chr8_2:3929899-3929918 | None:intergenic | 45.0% | |
| !! | GGTGACTTTGCTGTTGAGAT+TGG | - | chr8_2:3929911-3929930 | Msa1228490:intron | 45.0% |
| !! | ACTTTGCTGTTGAGATTGGG+AGG | - | chr8_2:3929915-3929934 | Msa1228490:intron | 45.0% |
| !! | TTCTGTTGAAAGCGCCAACA+AGG | - | chr8_2:3930533-3930552 | Msa1228490:intron | 45.0% |
| !! | GAAAGCGCCAACAAGGAAAT+TGG | - | chr8_2:3930540-3930559 | Msa1228490:intron | 45.0% |
| !! | AATTGGTTTGTGGTTCCCTG+AGG | - | chr8_2:3930557-3930576 | Msa1228490:intron | 45.0% |
| !! | ATTGGTTTGTGGTTCCCTGA+GGG | - | chr8_2:3930558-3930577 | Msa1228490:intron | 45.0% |
| GCAAATTCCCGATCAACTTC+AGG | + | chr8_2:3930637-3930656 | None:intergenic | 45.0% | |
| !!! | GCCCTATTTTGATCCTTTGC+TGG | - | chr8_2:3930655-3930674 | Msa1228490:intron | 45.0% |
| CATAGACAGATCCCTTAGGT+TGG | - | chr8_2:3930995-3931014 | Msa1228490:five_prime_UTR | 45.0% | |
| ! | TGTGGTGGTGTGAGAGGAAA+GGG | + | chr8_2:3928575-3928594 | None:intergenic | 50.0% |
| ! | TTGGGAGAGAGTGTGATGTG+TGG | + | chr8_2:3928593-3928612 | None:intergenic | 50.0% |
| ! | CGGTTGCTGTTGTTGCTGTT+TGG | + | chr8_2:3928612-3928631 | None:intergenic | 50.0% |
| GCCCTGTTGTTGCCATGATT+TGG | - | chr8_2:3929807-3929826 | Msa1228490:CDS | 50.0% | |
| CTCAGATTGAGCAGGGTTTG+TGG | + | chr8_2:3929876-3929895 | None:intergenic | 50.0% | |
| TTCCAGGCTCAGATTGAGCA+GGG | + | chr8_2:3929883-3929902 | None:intergenic | 50.0% | |
| TCTGAGCCTGGAACTATTCG+TGG | - | chr8_2:3929890-3929909 | Msa1228490:intron | 50.0% | |
| ACTCGTAAATCCACGAGTGG+AGG | + | chr8_2:3930605-3930624 | None:intergenic | 50.0% | |
| !! | GACAGATCCCTTAGGTTGGT+TGG | - | chr8_2:3930999-3931018 | Msa1228490:five_prime_UTR | 50.0% |
| ! | TGGTGGTGTGAGAGGAAAGG+GGG | + | chr8_2:3928573-3928592 | None:intergenic | 55.0% |
| ! | GTGGTGGTGTGAGAGGAAAG+GGG | + | chr8_2:3928574-3928593 | None:intergenic | 55.0% |
| ! | GTGTGGTGGTGTGAGAGGAA+AGG | + | chr8_2:3928576-3928595 | None:intergenic | 55.0% |
| ! | GTGATGTGTGGTGGTGTGAG+AGG | + | chr8_2:3928581-3928600 | None:intergenic | 55.0% |
| ! | GGAGAGAGTGTGATGTGTGG+TGG | + | chr8_2:3928590-3928609 | None:intergenic | 55.0% |
| AACCCTGCTCAATCTGAGCC+TGG | - | chr8_2:3929878-3929897 | Msa1228490:intron | 55.0% | |
| GTTCCAGGCTCAGATTGAGC+AGG | + | chr8_2:3929884-3929903 | None:intergenic | 55.0% | |
| GGTGGTGTGAGAGGAAAGGG+GGG | + | chr8_2:3928572-3928591 | None:intergenic | 60.0% | |
| ! | AGGCTGCTTTGCCATGCAGC+AGG | + | chr8_2:3930585-3930604 | None:intergenic | 60.0% |
| TCCCTGAGGGACCTGCTGCA+TGG | - | chr8_2:3930571-3930590 | Msa1228490:intron | 65.0% | |
| GCCATGCAGCAGGTCCCTCA+GGG | + | chr8_2:3930575-3930594 | None:intergenic | 65.0% | |
| TGCCATGCAGCAGGTCCCTC+AGG | + | chr8_2:3930576-3930595 | None:intergenic | 65.0% | |
| GGCAAAGCAGCCTCCACTCG+TGG | - | chr8_2:3930592-3930611 | Msa1228490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 3928515 | 3931065 | 3928515 | ID=Msa1228490;Name=Msa1228490 |
| chr8_2 | mRNA | 3928515 | 3931065 | 3928515 | ID=Msa1228490-mRNA-1;Parent=Msa1228490;Name=Msa1228490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=144|1|1|1|1|1|4|439|149 |
| chr8_2 | exon | 3928515 | 3929068 | 3928515 | ID=Msa1228490-mRNA-1:exon:1257;Parent=Msa1228490-mRNA-1 |
| chr8_2 | exon | 3929644 | 3929875 | 3929644 | ID=Msa1228490-mRNA-1:exon:1256;Parent=Msa1228490-mRNA-1 |
| chr8_2 | exon | 3930435 | 3930483 | 3930435 | ID=Msa1228490-mRNA-1:exon:1255;Parent=Msa1228490-mRNA-1 |
| chr8_2 | exon | 3930868 | 3931065 | 3930868 | ID=Msa1228490-mRNA-1:exon:1254;Parent=Msa1228490-mRNA-1 |
| chr8_2 | five_prime_UTR | 3930922 | 3931065 | 3930922 | ID=Msa1228490-mRNA-1:five_prime_utr;Parent=Msa1228490-mRNA-1 |
| chr8_2 | CDS | 3930868 | 3930921 | 3930868 | ID=Msa1228490-mRNA-1:cds;Parent=Msa1228490-mRNA-1 |
| chr8_2 | CDS | 3930435 | 3930483 | 3930435 | ID=Msa1228490-mRNA-1:cds;Parent=Msa1228490-mRNA-1 |
| chr8_2 | CDS | 3929644 | 3929875 | 3929644 | ID=Msa1228490-mRNA-1:cds;Parent=Msa1228490-mRNA-1 |
| chr8_2 | CDS | 3928954 | 3929068 | 3928954 | ID=Msa1228490-mRNA-1:cds;Parent=Msa1228490-mRNA-1 |
| chr8_2 | three_prime_UTR | 3928515 | 3928953 | 3928515 | ID=Msa1228490-mRNA-1:three_prime_utr;Parent=Msa1228490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
