Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596370 | XP_003605577.1 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 3.92e-84 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596370 | sp|Q9STY6|RS202_ARATH | 88.525 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 2.98e-75 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596370 | G7JPA9 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 1.87e-84 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027590 | Msa0596370 | 0.815428 | 9.292770e-52 | -8.615850e-47 |
| Msa0040220 | Msa0596370 | 0.809333 | 1.992584e-50 | -8.615850e-47 |
| Msa0045730 | Msa0596370 | 0.819361 | 1.209216e-52 | -8.615850e-47 |
| Msa0075350 | Msa0596370 | 0.812018 | 5.234309e-51 | -8.615850e-47 |
| Msa0116130 | Msa0596370 | 0.812061 | 5.123013e-51 | -8.615850e-47 |
| Msa0138890 | Msa0596370 | 0.843626 | 1.248268e-58 | -8.615850e-47 |
| Msa0181490 | Msa0596370 | 0.809962 | 1.460039e-50 | -8.615850e-47 |
| Msa0191450 | Msa0596370 | 0.813157 | 2.950337e-51 | -8.615850e-47 |
| Msa0219120 | Msa0596370 | 0.815408 | 9.389186e-52 | -8.615850e-47 |
| Msa0223440 | Msa0596370 | 0.808852 | 2.526182e-50 | -8.615850e-47 |
| Msa0369410 | Msa0596370 | 0.810092 | 1.369069e-50 | -8.615850e-47 |
| Msa0426090 | Msa0596370 | 0.818386 | 2.013716e-52 | -8.615850e-47 |
| Msa0463520 | Msa0596370 | 0.842033 | 3.310904e-58 | -8.615850e-47 |
| Msa0472480 | Msa0596370 | 0.825119 | 5.575783e-54 | -8.615850e-47 |
| Msa0475810 | Msa0596370 | 0.822517 | 2.270362e-53 | -8.615850e-47 |
| Msa0481520 | Msa0596370 | 0.806882 | 6.627336e-50 | -8.615850e-47 |
| Msa0481850 | Msa0596370 | 0.802823 | 4.672089e-49 | -8.615850e-47 |
| Msa0269180 | Msa0596370 | 0.825118 | 5.579605e-54 | -8.615850e-47 |
| Msa0297830 | Msa0596370 | 0.856885 | 2.376322e-62 | -8.615850e-47 |
| Msa0301220 | Msa0596370 | 0.829492 | 4.993818e-55 | -8.615850e-47 |
| Msa0306690 | Msa0596370 | 0.817443 | 3.289089e-52 | -8.615850e-47 |
| Msa0335840 | Msa0596370 | 0.866780 | 2.220240e-65 | -8.615850e-47 |
| Msa0596370 | Msa0623200 | 0.807511 | 4.877769e-50 | -8.615850e-47 |
| Msa0596370 | Msa0643820 | 0.808673 | 2.758646e-50 | -8.615850e-47 |
| Msa0596370 | Msa0705800 | 0.833897 | 4.096678e-56 | -8.615850e-47 |
| Msa0596370 | Msa0712610 | 0.828189 | 1.032520e-54 | -8.615850e-47 |
| Msa0596370 | Msa0717380 | 0.833136 | 6.342600e-56 | -8.615850e-47 |
| Msa0596370 | Msa0729200 | 0.801030 | 1.091390e-48 | -8.615850e-47 |
| Msa0596370 | Msa0781080 | 0.824949 | 6.115887e-54 | -8.615850e-47 |
| Msa0596370 | Msa0781310 | 0.832167 | 1.103013e-55 | -8.615850e-47 |
| Msa0596370 | Msa0788380 | 0.803600 | 3.226098e-49 | -8.615850e-47 |
| Msa0596370 | Msa0799830 | 0.832505 | 9.099238e-56 | -8.615850e-47 |
| Msa0596370 | Msa0822580 | 0.814282 | 1.668148e-51 | -8.615850e-47 |
| Msa0596370 | Msa0827380 | 0.841080 | 5.900503e-58 | -8.615850e-47 |
| Msa0596370 | Msa0860860 | 0.816244 | 6.111251e-52 | -8.615850e-47 |
| Msa0596370 | Msa0861320 | 0.817406 | 3.351975e-52 | -8.615850e-47 |
| Msa0596370 | Msa0915540 | 0.819507 | 1.119936e-52 | -8.615850e-47 |
| Msa0596370 | Msa0945480 | 0.810060 | 1.390621e-50 | -8.615850e-47 |
| Msa0596370 | Msa1021120 | 0.805569 | 1.253159e-49 | -8.615850e-47 |
| Msa0596370 | Msa1037290 | 0.838284 | 3.150118e-57 | -8.615850e-47 |
| Msa0596370 | Msa1040160 | 0.874824 | 4.993312e-68 | -8.615850e-47 |
| Msa0596370 | Msa1041680 | 0.816481 | 5.409457e-52 | -8.615850e-47 |
| Msa0596370 | Msa1042100 | 0.820823 | 5.594282e-53 | -8.615850e-47 |
| Msa0596370 | Msa1054280 | 0.820359 | 7.152712e-53 | -8.615850e-47 |
| Msa0596370 | Msa1058700 | 0.821616 | 3.673696e-53 | -8.615850e-47 |
| Msa0596370 | Msa1078980 | 0.808341 | 3.248381e-50 | -8.615850e-47 |
| Msa0596370 | Msa1082170 | 0.877921 | 4.263114e-69 | -8.615850e-47 |
| Msa0596370 | Msa1083370 | 0.858734 | 6.720645e-63 | -8.615850e-47 |
| Msa0596370 | Msa1096900 | 0.808139 | 3.586015e-50 | -8.615850e-47 |
| Msa0596370 | Msa1126520 | 0.830418 | 2.970140e-55 | -8.615850e-47 |
| Msa0596370 | Msa1164150 | 0.810122 | 1.348690e-50 | -8.615850e-47 |
| Msa0596370 | Msa1166570 | 0.823151 | 1.616420e-53 | -8.615850e-47 |
| Msa0596370 | Msa1186030 | 0.825983 | 3.480105e-54 | -8.615850e-47 |
| Msa0596370 | Msa1186980 | 0.805716 | 1.167014e-49 | -8.615850e-47 |
| Msa0596370 | Msa1218170 | 0.838640 | 2.550903e-57 | -8.615850e-47 |
| Msa0596370 | Msa1228490 | 0.804547 | 2.049637e-49 | -8.615850e-47 |
| Msa0596370 | Msa1240270 | 0.846349 | 2.297118e-59 | -8.615850e-47 |
| Msa0596370 | Msa1258540 | 0.804115 | 2.521540e-49 | -8.615850e-47 |
| Msa0596370 | Msa1356790 | 0.822734 | 2.021668e-53 | -8.615850e-47 |
| Msa0596370 | Msa1362790 | 0.822861 | 1.888388e-53 | -8.615850e-47 |
| Msa0596370 | Msa1364110 | 0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0596370 | Msa1368920 | 0.837920 | 3.908449e-57 | -8.615850e-47 |
| Msa0596370 | Msa1374240 | 0.814293 | 1.658556e-51 | -8.615850e-47 |
| Msa0596370 | Msa1392590 | 0.830390 | 3.016831e-55 | -8.615850e-47 |
| Msa0596370 | Msa1406080 | 0.852879 | 3.454833e-61 | -8.615850e-47 |
| Msa0596370 | Msa1426370 | 0.812249 | 4.662222e-51 | -8.615850e-47 |
| Msa0596370 | Msa1426490 | 0.817685 | 2.901167e-52 | -8.615850e-47 |
| Msa0596370 | Msa1455950 | 0.856317 | 3.491191e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596370 | MtrunA17_Chr4g0018141 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 3.61e-88 | 251 |
| Msa0596370 | MtrunA17_Chr7g0258291 | 98.361 | 122 | 2 | 0 | 1 | 122 | 1 | 122 | 5.61e-87 | 248 |
| Msa0596370 | MtrunA17_Chr2g0317541 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 4.91e-84 | 241 |
| Msa0596370 | MtrunA17_Chr1g0197931 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 4.91e-84 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0596370 | AT3G47370.3 | 88.525 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 3.03e-76 | 221 |
| Msa0596370 | AT3G47370.2 | 88.525 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 3.03e-76 | 221 |
| Msa0596370 | AT3G47370.1 | 88.525 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 3.03e-76 | 221 |
| Msa0596370 | AT5G62300.1 | 88.430 | 121 | 14 | 0 | 2 | 122 | 4 | 124 | 2.87e-75 | 219 |
| Msa0596370 | AT5G62300.2 | 88.430 | 121 | 14 | 0 | 2 | 122 | 4 | 124 | 2.87e-75 | 219 |
| Msa0596370 | AT3G45030.1 | 88.430 | 121 | 14 | 0 | 2 | 122 | 4 | 124 | 2.87e-75 | 219 |
Find 46 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCTTCTCTGCTGCTT+GGG | 0.255622 | 4_2:-26516449 | None:intergenic |
| GTGCTAAGGATAAGCATCTT+AGG | 0.267467 | 4_2:+26516819 | Msa0596370:CDS |
| TCTTCTTCTTCTCTGCTGCT+TGG | 0.346760 | 4_2:-26516450 | None:intergenic |
| AGAGAGTGATCCTAATCTTA+TGG | 0.362238 | 4_2:-26516634 | None:intergenic |
| ATCTATGCATCAGATTTCTA+AGG | 0.393700 | 4_2:-26518968 | None:intergenic |
| GAAGTGCTTTCACGGCGATT+TGG | 0.406318 | 4_2:-26516420 | None:intergenic |
| TCTTCCAAACCAGGCTTAGT+TGG | 0.410878 | 4_2:-26516596 | None:intergenic |
| AAAGAAATATTAGTCTCAAC+AGG | 0.418594 | 4_2:-26518994 | None:intergenic |
| GCCTGGTTTGGAAGAATCTC+AGG | 0.435840 | 4_2:+26516604 | Msa0596370:CDS |
| GAAACCAACTAAGCCTGGTT+TGG | 0.438912 | 4_2:+26516592 | Msa0596370:CDS |
| TTATTTGTAATTTAACCTCC+TGG | 0.446505 | 4_2:+26518766 | Msa0596370:three_prime_UTR |
| TTCTTCTTCTCTGCTGCTTG+GGG | 0.453659 | 4_2:-26516448 | None:intergenic |
| AGGAACAGATCCATAAGATT+AGG | 0.460004 | 4_2:+26516624 | Msa0596370:CDS |
| GCTTAAAATACTTGATATGA+AGG | 0.473331 | 4_2:-26518913 | None:intergenic |
| GTAATCTGCTTGACAACATC+AGG | 0.478418 | 4_2:-26518653 | None:intergenic |
| GGGATGATGAAGTGCTTTCA+CGG | 0.480104 | 4_2:-26516428 | None:intergenic |
| ACATGTTCAGAATCTCGAAA+AGG | 0.489111 | 4_2:+26516664 | Msa0596370:CDS |
| TCCTGAGATTCTTCCAAACC+AGG | 0.490218 | 4_2:-26516605 | None:intergenic |
| GGTAACCTCAACTTCGACAC+CGG | 0.491925 | 4_2:-26518693 | None:intergenic |
| AGGAAAACTCCTTGTGGAGA+AGG | 0.495414 | 4_2:+26516890 | Msa0596370:CDS |
| CATGTTCAGAATCTCGAAAA+GGG | 0.517875 | 4_2:+26516665 | Msa0596370:CDS |
| ACAGCAACACATTTCTAGCC+AGG | 0.525060 | 4_2:-26518784 | None:intergenic |
| TGCTAAGGATAAGCATCTTA+GGG | 0.525206 | 4_2:+26516820 | Msa0596370:CDS |
| TATGGTAGTTTGTAGTGACT+TGG | 0.528686 | 4_2:+26516790 | Msa0596370:intron |
| GCAATGAAACCAACTAAGCC+TGG | 0.533074 | 4_2:+26516587 | Msa0596370:CDS |
| ACTTTAACAAACATTTCTCA+TGG | 0.538323 | 4_2:-26518876 | None:intergenic |
| TGACTTGGTTCGTGGTGCTA+AGG | 0.539891 | 4_2:+26516805 | Msa0596370:CDS |
| GGATAAGCATCTTAGGGTGA+AGG | 0.543022 | 4_2:+26516826 | Msa0596370:CDS |
| GTTTGTAGTGACTTGGTTCG+TGG | 0.553261 | 4_2:+26516797 | Msa0596370:intron |
| TGAACCCGGTGTCGAAGTTG+AGG | 0.555520 | 4_2:+26518688 | Msa0596370:CDS |
| TGATAATCAAGCATCTGCAA+TGG | 0.568022 | 4_2:-26518714 | None:intergenic |
| GAAGAAGAAGAAAATCTCAA+AGG | 0.573857 | 4_2:+26516462 | Msa0596370:five_prime_UTR |
| GATAAGCATCTTAGGGTGAA+GGG | 0.583411 | 4_2:+26516827 | Msa0596370:CDS |
| CAACATCAGGTGAACTGTAG+AGG | 0.586753 | 4_2:-26518640 | None:intergenic |
| TTTCTAAGGAATATAAATTG+TGG | 0.587244 | 4_2:-26518954 | None:intergenic |
| GTAACCTCAACTTCGACACC+GGG | 0.590799 | 4_2:-26518692 | None:intergenic |
| TAAAATACTTGATATGAAGG+TGG | 0.594077 | 4_2:-26518910 | None:intergenic |
| ATGGTTAAGGTACAAACACA+TGG | 0.600096 | 4_2:+26518579 | Msa0596370:intron |
| TTAACAAACATTTCTCATGG+TGG | 0.617823 | 4_2:-26518873 | None:intergenic |
| ACCACTAGGAAAACTCCTTG+TGG | 0.627419 | 4_2:+26516884 | Msa0596370:CDS |
| TAAAATTTACCTTCTCCACA+AGG | 0.628775 | 4_2:-26516899 | None:intergenic |
| AAGTGCTTCACATTACCACT+AGG | 0.639472 | 4_2:+26516870 | Msa0596370:CDS |
| ACATCGATCACAATTGAACC+CGG | 0.686873 | 4_2:+26518674 | Msa0596370:CDS |
| GCAACACATTTCTAGCCAGG+AGG | 0.694059 | 4_2:-26518781 | None:intergenic |
| TGGTTAAGGTACAAACACAT+GGG | 0.706931 | 4_2:+26518580 | Msa0596370:intron |
| TTAGGGTGAAGGGACCAGTG+AGG | 0.764206 | 4_2:+26516837 | Msa0596370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTTTTTTGTTTTGTTA+TGG | + | chr4_2:26516772-26516791 | Msa0596370:intron | 15.0% |
| !!! | AAGGTAAATTTTATTTGATT+TGG | + | chr4_2:26516909-26516928 | Msa0596370:intron | 15.0% |
| !!! | TAGATATTAACTTTGTATTT+TGG | + | chr4_2:26517238-26517257 | Msa0596370:intron | 15.0% |
| !!! | TAGATATTAACTTTGTATTT+TGG | + | chr4_2:26517238-26517257 | Msa0596370:intron | 15.0% |
| !! | AAAAAATAAGACAATCAAAA+CGG | - | chr4_2:26517939-26517958 | None:intergenic | 15.0% |
| !!! | AAAATTTTGAAGTCTAATTA+TGG | + | chr4_2:26518809-26518828 | Msa0596370:three_prime_UTR | 15.0% |
| !!! | TTCTAGATGTTTTTATTTGA+TGG | + | chr4_2:26516735-26516754 | Msa0596370:intron | 20.0% |
| !! | ATAATTATAACAAAAAACCC+TGG | - | chr4_2:26517575-26517594 | None:intergenic | 20.0% |
| !! | ATAGTTGCATATTTCAAATT+GGG | + | chr4_2:26517618-26517637 | Msa0596370:intron | 20.0% |
| !! | TATTATTCATATGTTTGTCA+AGG | - | chr4_2:26518065-26518084 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAATAAACACTAG+GGG | - | chr4_2:26518154-26518173 | None:intergenic | 20.0% |
| !!! | CATTTTTCAAATAAACACTA+GGG | - | chr4_2:26518155-26518174 | None:intergenic | 20.0% |
| !!! | ACATTTTTCAAATAAACACT+AGG | - | chr4_2:26518156-26518175 | None:intergenic | 20.0% |
| !!! | TTTAGGATAATCTTATGTTA+TGG | - | chr4_2:26518392-26518411 | None:intergenic | 20.0% |
| !!! | CTCGATTATCTTTTATTTTA+TGG | + | chr4_2:26518843-26518862 | Msa0596370:three_prime_UTR | 20.0% |
| !!! | TTTAAGCTTTTGTTGAAAAA+TGG | + | chr4_2:26518929-26518948 | Msa0596370:three_prime_UTR | 20.0% |
| !!! | TTTCTAAGGAATATAAATTG+TGG | - | chr4_2:26518957-26518976 | None:intergenic | 20.0% |
| !!! | TTTGATGGTTTTGTTTTTTG+AGG | + | chr4_2:26516750-26516769 | Msa0596370:intron | 25.0% |
| !! | AGCTATCAAAAGAACTTTTA+GGG | - | chr4_2:26517020-26517039 | None:intergenic | 25.0% |
| !! | AAGCTATCAAAAGAACTTTT+AGG | - | chr4_2:26517021-26517040 | None:intergenic | 25.0% |
| ! | TTCACAAAATATGCAAATGA+TGG | - | chr4_2:26517268-26517287 | None:intergenic | 25.0% |
| ! | GCGTAGTATAAAAAATTACA+AGG | + | chr4_2:26517435-26517454 | Msa0596370:intron | 25.0% |
| ! | GATTAATTGACATGTATCAT+TGG | + | chr4_2:26517504-26517523 | Msa0596370:intron | 25.0% |
| ! | TTTGAAAATTATGAGTTTGC+TGG | + | chr4_2:26517540-26517559 | Msa0596370:intron | 25.0% |
| ! | AAATATGCAACTATCTAAGA+TGG | - | chr4_2:26517612-26517631 | None:intergenic | 25.0% |
| ! | GATAGTTGCATATTTCAAAT+TGG | + | chr4_2:26517617-26517636 | Msa0596370:intron | 25.0% |
| !!! | ATTTTTGTTTGTGCTTCATA+TGG | - | chr4_2:26517718-26517737 | None:intergenic | 25.0% |
| !!! | AGCACTTCTGAAATAAAATT+TGG | - | chr4_2:26518187-26518206 | None:intergenic | 25.0% |
| ! | TCTTTCAAACACTTATACAT+AGG | + | chr4_2:26518363-26518382 | Msa0596370:intron | 25.0% |
| ! | TTATTTGTAATTTAACCTCC+TGG | + | chr4_2:26518766-26518785 | Msa0596370:three_prime_UTR | 25.0% |
| !!! | TTTTGAAGTCTAATTATGGT+AGG | + | chr4_2:26518813-26518832 | Msa0596370:three_prime_UTR | 25.0% |
| ! | ACTTTAACAAACATTTCTCA+TGG | - | chr4_2:26518879-26518898 | None:intergenic | 25.0% |
| ! | TAAAATACTTGATATGAAGG+TGG | - | chr4_2:26518913-26518932 | None:intergenic | 25.0% |
| ! | GCTTAAAATACTTGATATGA+AGG | - | chr4_2:26518916-26518935 | None:intergenic | 25.0% |
| !! | AAAGAAATATTAGTCTCAAC+AGG | - | chr4_2:26518997-26519016 | None:intergenic | 25.0% |
| GAAGAAGAAGAAAATCTCAA+AGG | + | chr4_2:26516462-26516481 | Msa0596370:five_prime_UTR | 30.0% | |
| ATCTGTAATGATGAGAAAGT+AGG | - | chr4_2:26516492-26516511 | None:intergenic | 30.0% | |
| !! | TCAATCAGTGTTGAATTTTC+AGG | + | chr4_2:26516540-26516559 | Msa0596370:intron | 30.0% |
| !! | CAATCAGTGTTGAATTTTCA+GGG | + | chr4_2:26516541-26516560 | Msa0596370:intron | 30.0% |
| !! | AATCAGTGTTGAATTTTCAG+GGG | + | chr4_2:26516542-26516561 | Msa0596370:intron | 30.0% |
| TTTCAGGGGAAGAAAAAAAA+TGG | + | chr4_2:26516556-26516575 | Msa0596370:intron | 30.0% | |
| TAAAATTTACCTTCTCCACA+AGG | - | chr4_2:26516902-26516921 | None:intergenic | 30.0% | |
| !! | TTCTTTTGATAGCTTGTAGT+CGG | + | chr4_2:26517026-26517045 | Msa0596370:intron | 30.0% |
| ATTGTCTGATCTGAATCAAA+CGG | + | chr4_2:26517287-26517306 | Msa0596370:intron | 30.0% | |
| ATTGAACACATTGAACACAT+TGG | - | chr4_2:26517407-26517426 | None:intergenic | 30.0% | |
| TCAAACATTACACTAACACA+GGG | - | chr4_2:26517790-26517809 | None:intergenic | 30.0% | |
| ! | TACATAGAAATTGCGTTGAT+TGG | + | chr4_2:26517875-26517894 | Msa0596370:intron | 30.0% |
| TGCAATATCATTTGATGTCT+TGG | + | chr4_2:26517901-26517920 | Msa0596370:intron | 30.0% | |
| !! | TTGCACTCTAAAGTAGAATT+TGG | + | chr4_2:26518256-26518275 | Msa0596370:intron | 30.0% |
| !! | TGCACTCTAAAGTAGAATTT+GGG | + | chr4_2:26518257-26518276 | Msa0596370:intron | 30.0% |
| TAAAGTAGAATTTGGGAAGA+GGG | + | chr4_2:26518264-26518283 | Msa0596370:intron | 30.0% | |
| GTGTTTCAAATGGCTAATTT+AGG | - | chr4_2:26518409-26518428 | None:intergenic | 30.0% | |
| TTAACAAACATTTCTCATGG+TGG | - | chr4_2:26518876-26518895 | None:intergenic | 30.0% | |
| ATCTATGCATCAGATTTCTA+AGG | - | chr4_2:26518971-26518990 | None:intergenic | 30.0% | |
| !! | TTGGTTTTTGTGGGATTTTC+TGG | - | chr4_2:26516404-26516423 | None:intergenic | 35.0% |
| AGGAACAGATCCATAAGATT+AGG | + | chr4_2:26516624-26516643 | Msa0596370:CDS | 35.0% | |
| AGAGAGTGATCCTAATCTTA+TGG | - | chr4_2:26516637-26516656 | None:intergenic | 35.0% | |
| ACATGTTCAGAATCTCGAAA+AGG | + | chr4_2:26516664-26516683 | Msa0596370:CDS | 35.0% | |
| CATGTTCAGAATCTCGAAAA+GGG | + | chr4_2:26516665-26516684 | Msa0596370:CDS | 35.0% | |
| ! | TATGGTAGTTTGTAGTGACT+TGG | + | chr4_2:26516790-26516809 | Msa0596370:intron | 35.0% |
| TGCTAAGGATAAGCATCTTA+GGG | + | chr4_2:26516820-26516839 | Msa0596370:CDS | 35.0% | |
| !! | GTAATGTGAAGCACTTTTGT+TGG | - | chr4_2:26516866-26516885 | None:intergenic | 35.0% |
| !!! | TCTTTGTGCATTTTGATTGC+TGG | + | chr4_2:26516939-26516958 | Msa0596370:intron | 35.0% |
| !! | TCTTTTGATAGCTTGTAGTC+GGG | + | chr4_2:26517027-26517046 | Msa0596370:intron | 35.0% |
| TAACTACGTGAACGTGAAAT+CGG | - | chr4_2:26517058-26517077 | None:intergenic | 35.0% | |
| TCATACACTGATAAGTGTCA+CGG | - | chr4_2:26517110-26517129 | None:intergenic | 35.0% | |
| TTGTCTGATCTGAATCAAAC+GGG | + | chr4_2:26517288-26517307 | Msa0596370:intron | 35.0% | |
| ATATCTAGACTGTCACACAT+TGG | - | chr4_2:26517316-26517335 | None:intergenic | 35.0% | |
| ! | ATCTAAGATGGACAAACACA+AGG | - | chr4_2:26517600-26517619 | None:intergenic | 35.0% |
| ! | TTTGACTTAGTGAGATACTG+TGG | + | chr4_2:26517648-26517667 | Msa0596370:intron | 35.0% |
| CAAACATTACACTAACACAG+GGG | - | chr4_2:26517789-26517808 | None:intergenic | 35.0% | |
| CTCAAACATTACACTAACAC+AGG | - | chr4_2:26517791-26517810 | None:intergenic | 35.0% | |
| TGTTAGTGTAATGTTTGAGC+CGG | + | chr4_2:26517792-26517811 | Msa0596370:intron | 35.0% | |
| CTAAAGTAGAATTTGGGAAG+AGG | + | chr4_2:26518263-26518282 | Msa0596370:intron | 35.0% | |
| !! | TAGAAAGGGAGTGTTTCAAA+TGG | - | chr4_2:26518419-26518438 | None:intergenic | 35.0% |
| ! | ATTTGAAACACTCCCTTTCT+AGG | + | chr4_2:26518418-26518437 | Msa0596370:intron | 35.0% |
| TTAAGAACTGCACCTAGAAA+GGG | - | chr4_2:26518433-26518452 | None:intergenic | 35.0% | |
| ATTAAGAACTGCACCTAGAA+AGG | - | chr4_2:26518434-26518453 | None:intergenic | 35.0% | |
| ATCAGCTTCATGAACTATTG+CGG | + | chr4_2:26518506-26518525 | Msa0596370:intron | 35.0% | |
| TGAAACAGATTGTCAACACA+AGG | - | chr4_2:26518560-26518579 | None:intergenic | 35.0% | |
| ! | TGTGTTGACAATCTGTTTCA+TGG | + | chr4_2:26518560-26518579 | Msa0596370:intron | 35.0% |
| GACAATCTGTTTCATGGTTA+AGG | + | chr4_2:26518566-26518585 | Msa0596370:intron | 35.0% | |
| ATGGTTAAGGTACAAACACA+TGG | + | chr4_2:26518579-26518598 | Msa0596370:intron | 35.0% | |
| TGGTTAAGGTACAAACACAT+GGG | + | chr4_2:26518580-26518599 | Msa0596370:intron | 35.0% | |
| TGATAATCAAGCATCTGCAA+TGG | - | chr4_2:26518717-26518736 | None:intergenic | 35.0% | |
| GTGCTAAGGATAAGCATCTT+AGG | + | chr4_2:26516819-26516838 | Msa0596370:CDS | 40.0% | |
| GATAAGCATCTTAGGGTGAA+GGG | + | chr4_2:26516827-26516846 | Msa0596370:CDS | 40.0% | |
| AAGTGCTTCACATTACCACT+AGG | + | chr4_2:26516870-26516889 | Msa0596370:CDS | 40.0% | |
| AACTACGTGAACGTGAAATC+GGG | - | chr4_2:26517057-26517076 | None:intergenic | 40.0% | |
| CATACACTGATAAGTGTCAC+GGG | - | chr4_2:26517109-26517128 | None:intergenic | 40.0% | |
| ! | CTTTCTGATTTGACTCGAAC+TGG | + | chr4_2:26517379-26517398 | Msa0596370:intron | 40.0% |
| ! | TGAGATACTGTGGTTGCTTT+CGG | + | chr4_2:26517658-26517677 | Msa0596370:intron | 40.0% |
| !! | GTGGTTCTAGAGATGTACTA+GGG | + | chr4_2:26517681-26517700 | Msa0596370:intron | 40.0% |
| AAACGACATATGTCAGTGTC+CGG | - | chr4_2:26517814-26517833 | None:intergenic | 40.0% | |
| ! | ATATGTCGTTTCAGACACTC+AGG | + | chr4_2:26517823-26517842 | Msa0596370:intron | 40.0% |
| ACAGACACTTCTAATCAGAG+GGG | - | chr4_2:26517853-26517872 | None:intergenic | 40.0% | |
| CACAGACACTTCTAATCAGA+GGG | - | chr4_2:26517854-26517873 | None:intergenic | 40.0% | |
| ACACAGACACTTCTAATCAG+AGG | - | chr4_2:26517855-26517874 | None:intergenic | 40.0% | |
| ATAAACACTAGGGGTCTGTT+TGG | - | chr4_2:26518145-26518164 | None:intergenic | 40.0% | |
| ! | AGAATTTGGGAAGAGGGTAT+TGG | + | chr4_2:26518270-26518289 | Msa0596370:intron | 40.0% |
| !! | GAATTTGGGAAGAGGGTATT+GGG | + | chr4_2:26518271-26518290 | Msa0596370:intron | 40.0% |
| TCAGCTTCATGAACTATTGC+GGG | + | chr4_2:26518507-26518526 | Msa0596370:intron | 40.0% | |
| GTAATCTGCTTGACAACATC+AGG | - | chr4_2:26518656-26518675 | None:intergenic | 40.0% | |
| ACATCGATCACAATTGAACC+CGG | + | chr4_2:26518674-26518693 | Msa0596370:CDS | 40.0% | |
| !!! | CACGGCGATTTGGTTTTTGT+GGG | - | chr4_2:26516413-26516432 | None:intergenic | 45.0% |
| !!! | TCACGGCGATTTGGTTTTTG+TGG | - | chr4_2:26516414-26516433 | None:intergenic | 45.0% |
| ! | GGGATGATGAAGTGCTTTCA+CGG | - | chr4_2:26516431-26516450 | None:intergenic | 45.0% |
| ! | TTCTTCTTCTCTGCTGCTTG+GGG | - | chr4_2:26516451-26516470 | None:intergenic | 45.0% |
| ! | CTTCTTCTTCTCTGCTGCTT+GGG | - | chr4_2:26516452-26516471 | None:intergenic | 45.0% |
| TCTTCTTCTTCTCTGCTGCT+TGG | - | chr4_2:26516453-26516472 | None:intergenic | 45.0% | |
| GCAATGAAACCAACTAAGCC+TGG | + | chr4_2:26516587-26516606 | Msa0596370:CDS | 45.0% | |
| GAAACCAACTAAGCCTGGTT+TGG | + | chr4_2:26516592-26516611 | Msa0596370:CDS | 45.0% | |
| TCTTCCAAACCAGGCTTAGT+TGG | - | chr4_2:26516599-26516618 | None:intergenic | 45.0% | |
| TCCTGAGATTCTTCCAAACC+AGG | - | chr4_2:26516608-26516627 | None:intergenic | 45.0% | |
| !! | GTTTGTAGTGACTTGGTTCG+TGG | + | chr4_2:26516797-26516816 | Msa0596370:intron | 45.0% |
| GGATAAGCATCTTAGGGTGA+AGG | + | chr4_2:26516826-26516845 | Msa0596370:CDS | 45.0% | |
| ! | ACTTTTGTTGGCATCCTCAC+TGG | - | chr4_2:26516854-26516873 | None:intergenic | 45.0% |
| ACCACTAGGAAAACTCCTTG+TGG | + | chr4_2:26516884-26516903 | Msa0596370:CDS | 45.0% | |
| ! | TCCACAAGGAGTTTTCCTAG+TGG | - | chr4_2:26516888-26516907 | None:intergenic | 45.0% |
| AGGAAAACTCCTTGTGGAGA+AGG | + | chr4_2:26516890-26516909 | Msa0596370:CDS | 45.0% | |
| ACTACGTGAACGTGAAATCG+GGG | - | chr4_2:26517056-26517075 | None:intergenic | 45.0% | |
| TTAGTGTCTGTGTCCATGTC+CGG | + | chr4_2:26517164-26517183 | Msa0596370:intron | 45.0% | |
| TTTCATAGTGGTCAGCACCA+CGG | + | chr4_2:26517188-26517207 | Msa0596370:intron | 45.0% | |
| TTTGCTGGTGAGTACAACCA+GGG | + | chr4_2:26517555-26517574 | Msa0596370:intron | 45.0% | |
| ! | GAGATACTGTGGTTGCTTTC+GGG | + | chr4_2:26517659-26517678 | Msa0596370:intron | 45.0% |
| !! | GGTGGTTCTAGAGATGTACT+AGG | + | chr4_2:26517680-26517699 | Msa0596370:intron | 45.0% |
| CAACATCAGGTGAACTGTAG+AGG | - | chr4_2:26518643-26518662 | None:intergenic | 45.0% | |
| !! | ACAGCAACACATTTCTAGCC+AGG | - | chr4_2:26518787-26518806 | None:intergenic | 45.0% |
| !!! | TTATGTTTTTTTTTTTTATA+AGG | + | chr4_2:26516712-26516731 | Msa0596370:intron | 5.0% |
| ! | GAAGTGCTTTCACGGCGATT+TGG | - | chr4_2:26516423-26516442 | None:intergenic | 50.0% |
| !! | GCCTGGTTTGGAAGAATCTC+AGG | + | chr4_2:26516604-26516623 | Msa0596370:CDS | 50.0% |
| !! | TGACTTGGTTCGTGGTGCTA+AGG | + | chr4_2:26516805-26516824 | Msa0596370:CDS | 50.0% |
| TAGTGTCTGTGTCCATGTCC+GGG | + | chr4_2:26517165-26517184 | Msa0596370:intron | 50.0% | |
| TCCATGTCCGGGTTTCATAG+TGG | + | chr4_2:26517176-26517195 | Msa0596370:intron | 50.0% | |
| ACCACTATGAAACCCGGACA+TGG | - | chr4_2:26517180-26517199 | None:intergenic | 50.0% | |
| ! | GTGCTGACCACTATGAAACC+CGG | - | chr4_2:26517186-26517205 | None:intergenic | 50.0% |
| TCTTAATCCAACAGTCGCCG+TGG | - | chr4_2:26517208-26517227 | None:intergenic | 50.0% | |
| ! | GTTTGCTGGTGAGTACAACC+AGG | + | chr4_2:26517554-26517573 | Msa0596370:intron | 50.0% |
| ! | ATACTGTGGTTGCTTTCGGG+TGG | + | chr4_2:26517662-26517681 | Msa0596370:intron | 50.0% |
| CACTAGGGGTCTGTTTGGAT+TGG | - | chr4_2:26518140-26518159 | None:intergenic | 50.0% | |
| GTAACCTCAACTTCGACACC+GGG | - | chr4_2:26518695-26518714 | None:intergenic | 50.0% | |
| GGTAACCTCAACTTCGACAC+CGG | - | chr4_2:26518696-26518715 | None:intergenic | 50.0% | |
| !! | GCAACACATTTCTAGCCAGG+AGG | - | chr4_2:26518784-26518803 | None:intergenic | 50.0% |
| TTAGGGTGAAGGGACCAGTG+AGG | + | chr4_2:26516837-26516856 | Msa0596370:CDS | 55.0% | |
| ! | TGAACCCGGTGTCGAAGTTG+AGG | + | chr4_2:26518688-26518707 | Msa0596370:CDS | 55.0% |
| TCACGGGACGCGAGTTCGAT+CGG | - | chr4_2:26517093-26517112 | None:intergenic | 60.0% | |
| GTCAGCACCACGGCGACTGT+TGG | + | chr4_2:26517198-26517217 | Msa0596370:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 26516395 | 26519026 | 26516395 | ID=Msa0596370;Name=Msa0596370 |
| chr4_2 | mRNA | 26516395 | 26519026 | 26516395 | ID=Msa0596370-mRNA-1;Parent=Msa0596370;Name=Msa0596370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=102|1|1|1|0.66|0.5|4|296|122 |
| chr4_2 | exon | 26516395 | 26516483 | 26516395 | ID=Msa0596370-mRNA-1:exon:7066;Parent=Msa0596370-mRNA-1 |
| chr4_2 | exon | 26516562 | 26516686 | 26516562 | ID=Msa0596370-mRNA-1:exon:7067;Parent=Msa0596370-mRNA-1 |
| chr4_2 | exon | 26516798 | 26516911 | 26516798 | ID=Msa0596370-mRNA-1:exon:7068;Parent=Msa0596370-mRNA-1 |
| chr4_2 | exon | 26518588 | 26519026 | 26518588 | ID=Msa0596370-mRNA-1:exon:7069;Parent=Msa0596370-mRNA-1 |
| chr4_2 | five_prime_UTR | 26516395 | 26516483 | 26516395 | ID=Msa0596370-mRNA-1:five_prime_utr;Parent=Msa0596370-mRNA-1 |
| chr4_2 | five_prime_UTR | 26516562 | 26516574 | 26516562 | ID=Msa0596370-mRNA-1:five_prime_utr;Parent=Msa0596370-mRNA-1 |
| chr4_2 | CDS | 26516575 | 26516686 | 26516575 | ID=Msa0596370-mRNA-1:cds;Parent=Msa0596370-mRNA-1 |
| chr4_2 | CDS | 26516798 | 26516911 | 26516798 | ID=Msa0596370-mRNA-1:cds;Parent=Msa0596370-mRNA-1 |
| chr4_2 | CDS | 26518588 | 26518730 | 26518588 | ID=Msa0596370-mRNA-1:cds;Parent=Msa0596370-mRNA-1 |
| chr4_2 | three_prime_UTR | 26518731 | 26519026 | 26518731 | ID=Msa0596370-mRNA-1:three_prime_utr;Parent=Msa0596370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
