Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406080 | XP_003592049.1 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.57e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406080 | sp|P34788|RS18_ARATH | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.93e-104 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406080 | B7FMJ8 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 2.66e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002790 | Msa1406080 | 0.805122 | 1.554864e-49 | -8.615850e-47 |
| Msa0032810 | Msa1406080 | 0.856558 | 2.966515e-62 | -8.615850e-47 |
| Msa0038090 | Msa1406080 | 0.879321 | 1.370478e-69 | -8.615850e-47 |
| Msa0042480 | Msa1406080 | 0.841016 | 6.134202e-58 | -8.615850e-47 |
| Msa0045730 | Msa1406080 | 0.848764 | 4.977031e-60 | -8.615850e-47 |
| Msa0075350 | Msa1406080 | 0.812576 | 3.954183e-51 | -8.615850e-47 |
| Msa0079590 | Msa1406080 | 0.837933 | 3.879421e-57 | -8.615850e-47 |
| Msa0114570 | Msa1406080 | 0.841762 | 3.903745e-58 | -8.615850e-47 |
| Msa0116130 | Msa1406080 | 0.862783 | 3.966885e-64 | -8.615850e-47 |
| Msa0116670 | Msa1406080 | 0.833201 | 6.108880e-56 | -8.615850e-47 |
| Msa1349570 | Msa1406080 | 0.835431 | 1.685299e-56 | -8.615850e-47 |
| Msa1356790 | Msa1406080 | 0.866772 | 2.232573e-65 | -8.615850e-47 |
| Msa1362790 | Msa1406080 | 0.860742 | 1.670847e-63 | -8.615850e-47 |
| Msa1368920 | Msa1406080 | 0.850703 | 1.430729e-60 | -8.615850e-47 |
| Msa1369190 | Msa1406080 | 0.844756 | 6.209079e-59 | -8.615850e-47 |
| Msa1374240 | Msa1406080 | 0.855673 | 5.389454e-62 | -8.615850e-47 |
| Msa1392590 | Msa1406080 | 0.832094 | 1.149856e-55 | -8.615850e-47 |
| Msa1403910 | Msa1406080 | 0.817204 | 3.723328e-52 | -8.615850e-47 |
| Msa1406080 | Msa1413500 | 0.833674 | 4.657597e-56 | -8.615850e-47 |
| Msa1406080 | Msa1426120 | 0.812981 | 3.225100e-51 | -8.615850e-47 |
| Msa1406080 | Msa1426370 | 0.835029 | 2.128585e-56 | -8.615850e-47 |
| Msa1406080 | Msa1426490 | 0.844224 | 8.629955e-59 | -8.615850e-47 |
| Msa1406080 | Msa1427560 | 0.837268 | 5.745555e-57 | -8.615850e-47 |
| Msa1406080 | Msa1455950 | 0.868303 | 7.216470e-66 | -8.615850e-47 |
| Msa1406080 | Msa1462860 | 0.808220 | 3.446991e-50 | -8.615850e-47 |
| Msa1406080 | Msa1465260 | 0.800180 | 1.626773e-48 | -8.615850e-47 |
| Msa0604960 | Msa1406080 | 0.824662 | 7.147859e-54 | -8.615850e-47 |
| Msa0615580 | Msa1406080 | 0.819278 | 1.263116e-52 | -8.615850e-47 |
| Msa0617540 | Msa1406080 | 0.811026 | 8.600385e-51 | -8.615850e-47 |
| Msa0622750 | Msa1406080 | 0.830107 | 3.538031e-55 | -8.615850e-47 |
| Msa0623200 | Msa1406080 | 0.851183 | 1.047940e-60 | -8.615850e-47 |
| Msa0656410 | Msa1406080 | 0.807072 | 6.042102e-50 | -8.615850e-47 |
| Msa0666230 | Msa1406080 | 0.817560 | 3.095180e-52 | -8.615850e-47 |
| Msa0683660 | Msa1406080 | 0.835589 | 1.536728e-56 | -8.615850e-47 |
| Msa0705800 | Msa1406080 | 0.837893 | 3.973069e-57 | -8.615850e-47 |
| Msa0712610 | Msa1406080 | 0.869532 | 2.886533e-66 | -8.615850e-47 |
| Msa0717380 | Msa1406080 | 0.862001 | 6.900357e-64 | -8.615850e-47 |
| Msa0729200 | Msa1406080 | 0.853086 | 3.015365e-61 | -8.615850e-47 |
| Msa0752910 | Msa1406080 | 0.845198 | 4.717286e-59 | -8.615850e-47 |
| Msa0766080 | Msa1406080 | 0.870556 | 1.335195e-66 | -8.615850e-47 |
| Msa0769590 | Msa1406080 | 0.848608 | 5.498728e-60 | -8.615850e-47 |
| Msa0781080 | Msa1406080 | 0.916459 | 1.736790e-85 | -8.615850e-47 |
| Msa0785130 | Msa1406080 | 0.802459 | 5.553900e-49 | -8.615850e-47 |
| Msa0799830 | Msa1406080 | 0.835475 | 1.642606e-56 | -8.615850e-47 |
| Msa0806880 | Msa1406080 | 0.840262 | 9.667797e-58 | -8.615850e-47 |
| Msa0822580 | Msa1406080 | 0.806929 | 6.478662e-50 | -8.615850e-47 |
| Msa0827380 | Msa1406080 | 0.986269 | 3.145316e-166 | -8.615850e-47 |
| Msa0133540 | Msa1406080 | 0.861069 | 1.328750e-63 | -8.615850e-47 |
| Msa0138890 | Msa1406080 | 0.856456 | 3.178423e-62 | -8.615850e-47 |
| Msa0172930 | Msa1406080 | 0.849077 | 4.076052e-60 | -8.615850e-47 |
| Msa0173530 | Msa1406080 | 0.829204 | 5.867613e-55 | -8.615850e-47 |
| Msa0181490 | Msa1406080 | 0.871207 | 8.149513e-67 | -8.615850e-47 |
| Msa0192750 | Msa1406080 | 0.811327 | 7.400203e-51 | -8.615850e-47 |
| Msa0194940 | Msa1406080 | 0.802481 | 5.497757e-49 | -8.615850e-47 |
| Msa0197980 | Msa1406080 | 0.819192 | 1.321389e-52 | -8.615850e-47 |
| Msa0218830 | Msa1406080 | 0.820943 | 5.250701e-53 | -8.615850e-47 |
| Msa0219120 | Msa1406080 | 0.854327 | 1.324876e-61 | -8.615850e-47 |
| Msa0229150 | Msa1406080 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
| Msa0230490 | Msa1406080 | 0.825560 | 4.385319e-54 | -8.615850e-47 |
| Msa0230520 | Msa1406080 | 0.837331 | 5.537410e-57 | -8.615850e-47 |
| Msa1228490 | Msa1406080 | 0.821380 | 4.163863e-53 | -8.615850e-47 |
| Msa1311400 | Msa1406080 | 0.808285 | 3.337966e-50 | -8.615850e-47 |
| Msa1316680 | Msa1406080 | 0.818112 | 2.323433e-52 | -8.615850e-47 |
| Msa1332250 | Msa1406080 | 0.806803 | 6.888278e-50 | -8.615850e-47 |
| Msa1340980 | Msa1406080 | 0.841847 | 3.705706e-58 | -8.615850e-47 |
| Msa0443390 | Msa1406080 | 0.824699 | 7.007608e-54 | -8.615850e-47 |
| Msa0481850 | Msa1406080 | 0.867203 | 1.627210e-65 | -8.615850e-47 |
| Msa1010310 | Msa1406080 | 0.816502 | 5.350070e-52 | -8.615850e-47 |
| Msa1021120 | Msa1406080 | 0.805909 | 1.063136e-49 | -8.615850e-47 |
| Msa1037290 | Msa1406080 | 0.852669 | 3.967366e-61 | -8.615850e-47 |
| Msa1039470 | Msa1406080 | 0.811469 | 6.891932e-51 | -8.615850e-47 |
| Msa1042100 | Msa1406080 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa1078870 | Msa1406080 | 0.805680 | 1.187804e-49 | -8.615850e-47 |
| Msa1078980 | Msa1406080 | 0.802326 | 5.916970e-49 | -8.615850e-47 |
| Msa1080350 | Msa1406080 | 0.864647 | 1.045750e-64 | -8.615850e-47 |
| Msa1082170 | Msa1406080 | 0.844360 | 7.933543e-59 | -8.615850e-47 |
| Msa1094380 | Msa1406080 | 0.820417 | 6.937180e-53 | -8.615850e-47 |
| Msa1096900 | Msa1406080 | 0.855497 | 6.061906e-62 | -8.615850e-47 |
| Msa0258850 | Msa1406080 | 0.833017 | 6.787739e-56 | -8.615850e-47 |
| Msa0297830 | Msa1406080 | 0.825662 | 4.147824e-54 | -8.615850e-47 |
| Msa0298200 | Msa1406080 | 0.830237 | 3.289232e-55 | -8.615850e-47 |
| Msa0301220 | Msa1406080 | 0.814527 | 1.472093e-51 | -8.615850e-47 |
| Msa0302610 | Msa1406080 | 0.801856 | 7.391041e-49 | -8.615850e-47 |
| Msa0306690 | Msa1406080 | 0.877525 | 5.858674e-69 | -8.615850e-47 |
| Msa0335840 | Msa1406080 | 0.827390 | 1.606313e-54 | -8.615850e-47 |
| Msa0337670 | Msa1406080 | 0.817820 | 2.704977e-52 | -8.615850e-47 |
| Msa0348830 | Msa1406080 | 0.863023 | 3.346523e-64 | -8.615850e-47 |
| Msa1125860 | Msa1406080 | 0.862098 | 6.443786e-64 | -8.615850e-47 |
| Msa1126060 | Msa1406080 | 0.864139 | 1.507779e-64 | -8.615850e-47 |
| Msa1126520 | Msa1406080 | 0.877767 | 4.824250e-69 | -8.615850e-47 |
| Msa1164150 | Msa1406080 | 0.823540 | 1.311069e-53 | -8.615850e-47 |
| Msa1166570 | Msa1406080 | 0.804855 | 1.768171e-49 | -8.615850e-47 |
| Msa1166870 | Msa1406080 | 0.805171 | 1.518669e-49 | -8.615850e-47 |
| Msa1186980 | Msa1406080 | 0.825976 | 3.494521e-54 | -8.615850e-47 |
| Msa1218170 | Msa1406080 | 0.845545 | 3.798336e-59 | -8.615850e-47 |
| Msa0483110 | Msa1406080 | 0.829334 | 5.457328e-55 | -8.615850e-47 |
| Msa0534750 | Msa1406080 | 0.817498 | 3.195895e-52 | -8.615850e-47 |
| Msa0584030 | Msa1406080 | 0.816938 | 4.272155e-52 | -8.615850e-47 |
| Msa0588630 | Msa1406080 | -0.844356 | 7.952115e-59 | -8.615850e-47 |
| Msa0596370 | Msa1406080 | 0.852879 | 3.454833e-61 | -8.615850e-47 |
| Msa0845550 | Msa1406080 | 0.852859 | 3.501790e-61 | -8.615850e-47 |
| Msa0861320 | Msa1406080 | 0.858336 | 8.833558e-63 | -8.615850e-47 |
| Msa0876170 | Msa1406080 | 0.839856 | 1.233416e-57 | -8.615850e-47 |
| Msa0945480 | Msa1406080 | 0.847578 | 1.058352e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406080 | MtrunA17_Chr1g0201521 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.12e-112 | 314 |
| Msa1406080 | MtrunA17_Chr1g0201481 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.12e-112 | 314 |
| Msa1406080 | MtrunA17_Chr6g0467091 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 5.31e-111 | 311 |
| Msa1406080 | MtrunA17_Chr5g0409931 | 94.286 | 105 | 6 | 0 | 36 | 140 | 12 | 116 | 2.72e-70 | 207 |
| Msa1406080 | MtrunA17_Chr5g0409851 | 93.258 | 89 | 6 | 0 | 52 | 140 | 1 | 89 | 3.41e-58 | 176 |
| Msa1406080 | MtrunA17_Chr5g0409921 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 4.30e-58 | 175 |
| Msa1406080 | MtrunA17_Chr5g0409871 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
| Msa1406080 | MtrunA17_Chr5g0409881 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
| Msa1406080 | MtrunA17_Chr5g0409861 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
| Msa1406080 | MtrunA17_Chr5g0409911 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
| Msa1406080 | MtrunA17_Chr5g0409891 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 5.53e-58 | 175 |
| Msa1406080 | MtrunA17_Chr5g0409901 | 95.714 | 70 | 3 | 0 | 52 | 121 | 1 | 70 | 1.12e-43 | 138 |
| Msa1406080 | MtrunA17_Chr4g0006461 | 76.562 | 64 | 14 | 1 | 67 | 129 | 9 | 72 | 3.44e-28 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406080 | AT4G09800.1 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.97e-105 | 298 |
| Msa1406080 | AT1G34030.1 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.97e-105 | 298 |
| Msa1406080 | AT1G22780.1 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.97e-105 | 298 |
Find 44 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTCGGCTAGTCTAAAA+TGG | 0.337255 | tig0023189:+4215 | Msa1406080:exon |
| CAGCTTCATGTCAAGTTGAT+TGG | 0.350481 | tig0023189:-4772 | None:intergenic |
| CATGAAGCTGAGGGATGATT+TGG | 0.353151 | tig0023189:+4785 | Msa1406080:CDS |
| TTTCCTATACAGACTTTGTA+TGG | 0.367358 | tig0023189:+5816 | Msa1406080:three_prime_UTR |
| ATCGTGGATTGAGGCACTAC+TGG | 0.374036 | tig0023189:+5649 | Msa1406080:CDS |
| TCCTCTGCGGCCAGTAGTCT+TGG | 0.415117 | tig0023189:-5697 | None:intergenic |
| CAACCATACAAAGTCTGTAT+AGG | 0.422779 | tig0023189:-5819 | None:intergenic |
| TACTGGGGCCTTCGTGTTCG+TGG | 0.449083 | tig0023189:+5666 | Msa1406080:CDS |
| ATGACCTCAATCAAGGGTAT+TGG | 0.454252 | tig0023189:+4407 | Msa1406080:CDS |
| GTTCGCAATGACCTCAATCA+AGG | 0.479686 | tig0023189:+4400 | Msa1406080:CDS |
| GTCAATTCAAGGTTCCAGAT+TGG | 0.495981 | tig0023189:+4697 | Msa1406080:CDS |
| CGCTAACATCTGCTGTAAGA+AGG | 0.503592 | tig0023189:+4439 | Msa1406080:CDS |
| TGCGAATCCTCGTCAATTCA+AGG | 0.503849 | tig0023189:+4686 | Msa1406080:CDS |
| TGGAGAGACTCAAGAAGATC+CGG | 0.515884 | tig0023189:+4805 | Msa1406080:CDS |
| TCGTGGATTGAGGCACTACT+GGG | 0.516130 | tig0023189:+5650 | Msa1406080:CDS |
| GAACAGAAAGAAGGATTACA+AGG | 0.525479 | tig0023189:+4725 | Msa1406080:CDS |
| CACAGCGACACACACACCCT+TGG | 0.542411 | tig0023189:+4165 | Msa1406080:five_prime_UTR |
| CCTTCCAATACCCTTGATTG+AGG | 0.543469 | tig0023189:-4411 | None:intergenic |
| AGCGACACACACACCCTTGG+CGG | 0.551294 | tig0023189:+4168 | Msa1406080:five_prime_UTR |
| GGTCAGCATACCAAGACTAC+TGG | 0.555192 | tig0023189:+5687 | Msa1406080:CDS |
| CGACCAAGGTTCACTGTGAA+CGG | 0.561670 | tig0023189:-4200 | None:intergenic |
| AACGGTGATGACTGCCGCCA+AGG | 0.561805 | tig0023189:-4182 | None:intergenic |
| AGAAAGAAGGATTACAAGGA+TGG | 0.565673 | tig0023189:+4729 | Msa1406080:CDS |
| CGTTCACAGTGAACCTTGGT+CGG | 0.565860 | tig0023189:+4201 | Msa1406080:five_prime_UTR |
| TGAATTGAGTGCCGCAGAGT+TGG | 0.583506 | tig0023189:+4644 | Msa1406080:CDS |
| ACGGTGATGACTGCCGCCAA+GGG | 0.587269 | tig0023189:-4181 | None:intergenic |
| ATCAACTTGACATGAAGCTG+AGG | 0.604543 | tig0023189:+4775 | Msa1406080:CDS |
| ACCAAGACTACTGGCCGCAG+AGG | 0.620084 | tig0023189:+5696 | Msa1406080:CDS |
| GTTGGATAATATTATGACAG+TGG | 0.620536 | tig0023189:+4662 | Msa1406080:CDS |
| TTCGCAATGACCTCAATCAA+GGG | 0.622158 | tig0023189:+4401 | Msa1406080:CDS |
| TCACCGTTCACAGTGAACCT+TGG | 0.622608 | tig0023189:+4197 | Msa1406080:five_prime_UTR |
| GGCCGCAGAGGAAAGACAGT+TGG | 0.623790 | tig0023189:+5708 | Msa1406080:CDS |
| GTGTTGAACACAAATGTCGA+TGG | 0.634706 | tig0023189:+4362 | Msa1406080:CDS |
| TCAACTTGACATGAAGCTGA+GGG | 0.637423 | tig0023189:+4776 | Msa1406080:CDS |
| GCAGTAATCATCGTGGATTG+AGG | 0.637806 | tig0023189:+5640 | Msa1406080:intron |
| CTGTTATGCAGTAATCATCG+TGG | 0.641883 | tig0023189:+5633 | Msa1406080:intron |
| CCTCAATCAAGGGTATTGGA+AGG | 0.644293 | tig0023189:+4411 | Msa1406080:CDS |
| CCTCTTGTTCATGTCAACAT+CGG | 0.651019 | tig0023189:-4462 | None:intergenic |
| CCGATGTTGACATGAACAAG+AGG | 0.658386 | tig0023189:+4462 | Msa1406080:CDS |
| TCTGGAACCTTGAATTGACG+AGG | 0.669518 | tig0023189:-4693 | None:intergenic |
| CATAATATTATCCAACTCTG+CGG | 0.698001 | tig0023189:-4655 | None:intergenic |
| CACCAACTGTCTTTCCTCTG+CGG | 0.707516 | tig0023189:-5710 | None:intergenic |
| CGTGGATTGAGGCACTACTG+GGG | 0.709284 | tig0023189:+5651 | Msa1406080:CDS |
| TATGCTGACCACGAACACGA+AGG | 0.739225 | tig0023189:-5674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGTTGTTAAAATTAA+TGG | + | tig0023189:4525-4544 | Msa1406080:intron | 10.0% |
| !!! | TTTTTGTTGTTAAAATTAAT+GGG | + | tig0023189:4526-4545 | Msa1406080:intron | 10.0% |
| !!! | ATTTTTGTTGTTAAAATTAA+TGG | + | tig0023189:4525-4544 | Msa1406080:intron | 10.0% |
| !!! | TTTTTGTTGTTAAAATTAAT+GGG | + | tig0023189:4526-4545 | Msa1406080:intron | 10.0% |
| !!! | TTTTGATATTATTGTTGAAA+TGG | + | tig0023189:4588-4607 | Msa1406080:intron | 15.0% |
| !! | TTTGATATTATTGTTGAAAT+GGG | + | tig0023189:4589-4608 | Msa1406080:intron | 15.0% |
| !! | GTTTAAATAAATATCAATCT+AGG | + | tig0023189:5491-5510 | Msa1406080:intron | 15.0% |
| !! | GAAGTTACAAAAAATTATAA+TGG | - | tig0023189:5521-5540 | None:intergenic | 15.0% |
| !!! | TTTTGATATTATTGTTGAAA+TGG | + | tig0023189:4588-4607 | Msa1406080:intron | 15.0% |
| !! | TTTGATATTATTGTTGAAAT+GGG | + | tig0023189:4589-4608 | Msa1406080:intron | 15.0% |
| !! | GTTTAAATAAATATCAATCT+AGG | + | tig0023189:5491-5510 | Msa1406080:intron | 15.0% |
| !! | GAAGTTACAAAAAATTATAA+TGG | - | tig0023189:5521-5540 | None:intergenic | 15.0% |
| !!! | AATGACTGATTTATAAAAGT+GGG | - | tig0023189:4508-4527 | None:intergenic | 20.0% |
| !!! | AAATGACTGATTTATAAAAG+TGG | - | tig0023189:4509-4528 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTGGATTTTTTT+AGG | + | tig0023189:4616-4635 | Msa1406080:intron | 20.0% |
| !!! | TTTGTTGTTGGATTTTTTTA+GGG | + | tig0023189:4617-4636 | Msa1406080:intron | 20.0% |
| !! | TATTAATTCTATCATCTTTC+TGG | - | tig0023189:4899-4918 | None:intergenic | 20.0% |
| !!! | TAATTTATTGCTTTGATAGT+TGG | + | tig0023189:5011-5030 | Msa1406080:intron | 20.0% |
| !!! | TTCAGTAATATTTCTGAAAT+TGG | + | tig0023189:5553-5572 | Msa1406080:intron | 20.0% |
| !!! | TCAGTAATATTTCTGAAATT+GGG | + | tig0023189:5554-5573 | Msa1406080:intron | 20.0% |
| !!! | TAATCTGTTATGTTTTGATT+TGG | + | tig0023189:5747-5766 | Msa1406080:exon | 20.0% |
| !!! | AATGACTGATTTATAAAAGT+GGG | - | tig0023189:4508-4527 | None:intergenic | 20.0% |
| !!! | AAATGACTGATTTATAAAAG+TGG | - | tig0023189:4509-4528 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTGGATTTTTTT+AGG | + | tig0023189:4616-4635 | Msa1406080:intron | 20.0% |
| !!! | TTTGTTGTTGGATTTTTTTA+GGG | + | tig0023189:4617-4636 | Msa1406080:intron | 20.0% |
| !! | TATTAATTCTATCATCTTTC+TGG | - | tig0023189:4899-4918 | None:intergenic | 20.0% |
| !!! | TAATTTATTGCTTTGATAGT+TGG | + | tig0023189:5011-5030 | Msa1406080:intron | 20.0% |
| !!! | TTCAGTAATATTTCTGAAAT+TGG | + | tig0023189:5553-5572 | Msa1406080:intron | 20.0% |
| !!! | TCAGTAATATTTCTGAAATT+GGG | + | tig0023189:5554-5573 | Msa1406080:intron | 20.0% |
| !!! | TAATCTGTTATGTTTTGATT+TGG | + | tig0023189:5747-5766 | Msa1406080:exon | 20.0% |
| !!! | ACATTTTAACACTACTATGT+AGG | + | tig0023189:4950-4969 | Msa1406080:intron | 25.0% |
| !!! | ATGTAGGAATATTTAAGTTG+AGG | + | tig0023189:4966-4985 | Msa1406080:intron | 25.0% |
| ! | AGTGTTTGAATAATAGAATG+AGG | + | tig0023189:5075-5094 | Msa1406080:intron | 25.0% |
| ! | ATTAAAACTGGTTAGAAAAG+TGG | - | tig0023189:5152-5171 | None:intergenic | 25.0% |
| !!! | ATATTTTAGCTTATGGGAAA+CGG | - | tig0023189:5314-5333 | None:intergenic | 25.0% |
| ! | TTTCCCATAAGCTAAAATAT+AGG | + | tig0023189:5314-5333 | Msa1406080:intron | 25.0% |
| ! | TATAAGATGAAAACAGTTGA+TGG | + | tig0023189:5409-5428 | Msa1406080:intron | 25.0% |
| ! | AAATAAATATCAATCTAGGC+AGG | + | tig0023189:5495-5514 | Msa1406080:intron | 25.0% |
| !! | TCTTATTTGTTGAATGTTGT+TGG | + | tig0023189:5897-5916 | Msa1406080:intron | 25.0% |
| ! | ATTTCTATGTTAAGAACCAA+CGG | - | tig0023189:5929-5948 | None:intergenic | 25.0% |
| !!! | ACATTTTAACACTACTATGT+AGG | + | tig0023189:4950-4969 | Msa1406080:intron | 25.0% |
| !!! | ATGTAGGAATATTTAAGTTG+AGG | + | tig0023189:4966-4985 | Msa1406080:intron | 25.0% |
| ! | AGTGTTTGAATAATAGAATG+AGG | + | tig0023189:5075-5094 | Msa1406080:intron | 25.0% |
| ! | ATTAAAACTGGTTAGAAAAG+TGG | - | tig0023189:5152-5171 | None:intergenic | 25.0% |
| !!! | ATATTTTAGCTTATGGGAAA+CGG | - | tig0023189:5314-5333 | None:intergenic | 25.0% |
| ! | TTTCCCATAAGCTAAAATAT+AGG | + | tig0023189:5314-5333 | Msa1406080:intron | 25.0% |
| ! | TATAAGATGAAAACAGTTGA+TGG | + | tig0023189:5409-5428 | Msa1406080:intron | 25.0% |
| ! | AAATAAATATCAATCTAGGC+AGG | + | tig0023189:5495-5514 | Msa1406080:intron | 25.0% |
| !! | TCTTATTTGTTGAATGTTGT+TGG | + | tig0023189:5897-5916 | Msa1406080:intron | 25.0% |
| ! | ATTTCTATGTTAAGAACCAA+CGG | - | tig0023189:5929-5948 | None:intergenic | 25.0% |
| AGTGAAGAAAGAGATGAAAT+CGG | - | tig0023189:4254-4273 | None:intergenic | 30.0% | |
| ACGAAAAATAACAGAATCAG+TGG | - | tig0023189:4291-4310 | None:intergenic | 30.0% | |
| !!! | AAATGGGTTGTTTTTGTTGT+TGG | + | tig0023189:4605-4624 | Msa1406080:intron | 30.0% |
| CATAATATTATCCAACTCTG+CGG | - | tig0023189:4658-4677 | None:intergenic | 30.0% | |
| GTTGGATAATATTATGACAG+TGG | + | tig0023189:4662-4681 | Msa1406080:CDS | 30.0% | |
| TTTCTGTTCAAAAACCAATC+TGG | - | tig0023189:4714-4733 | None:intergenic | 30.0% | |
| !! | TTGGTTTTTGAACAGAAAGA+AGG | + | tig0023189:4716-4735 | Msa1406080:CDS | 30.0% |
| ATAGAATGAGGATTCACTAT+TGG | + | tig0023189:5087-5106 | Msa1406080:intron | 30.0% | |
| TAGCGCATTTCAATTAAAAC+TGG | - | tig0023189:5164-5183 | None:intergenic | 30.0% | |
| TCAATTTCCAAACACTATTG+TGG | - | tig0023189:5248-5267 | None:intergenic | 30.0% | |
| GTGTTTGGAAATTGATTATC+AGG | + | tig0023189:5253-5272 | Msa1406080:intron | 30.0% | |
| !!! | CTGCCTATATTTTAGCTTAT+GGG | - | tig0023189:5320-5339 | None:intergenic | 30.0% |
| !!! | ACTGCCTATATTTTAGCTTA+TGG | - | tig0023189:5321-5340 | None:intergenic | 30.0% |
| AAAATATAGGCAGTGAAAAC+TGG | + | tig0023189:5327-5346 | Msa1406080:intron | 30.0% | |
| AAATATAGGCAGTGAAAACT+GGG | + | tig0023189:5328-5347 | Msa1406080:intron | 30.0% | |
| !!! | ACTTGTATTGGTTTTTCTCT+TGG | + | tig0023189:5371-5390 | Msa1406080:intron | 30.0% |
| ! | TTGCATAAGCAAACTGTTTT+GGG | - | tig0023189:5463-5482 | None:intergenic | 30.0% |
| ! | TTTGCATAAGCAAACTGTTT+TGG | - | tig0023189:5464-5483 | None:intergenic | 30.0% |
| !! | ATATTTCTGAAATTGGGCAT+TGG | + | tig0023189:5560-5579 | Msa1406080:intron | 30.0% |
| !!! | GCTGGTTACTAAATTTTTTG+TGG | + | tig0023189:5582-5601 | Msa1406080:intron | 30.0% |
| !!! | GGTTACTAAATTTTTTGTGG+CGG | + | tig0023189:5585-5604 | Msa1406080:intron | 30.0% |
| ATGATTACTGCATAACAGAA+AGG | - | tig0023189:5631-5650 | None:intergenic | 30.0% | |
| ! | TTGGAGATTAGATGATTTTG+AGG | + | tig0023189:5766-5785 | Msa1406080:three_prime_UTR | 30.0% |
| TTTCCTATACAGACTTTGTA+TGG | + | tig0023189:5816-5835 | Msa1406080:three_prime_UTR | 30.0% | |
| AGTGAAGAAAGAGATGAAAT+CGG | - | tig0023189:4254-4273 | None:intergenic | 30.0% | |
| ACGAAAAATAACAGAATCAG+TGG | - | tig0023189:4291-4310 | None:intergenic | 30.0% | |
| !!! | AAATGGGTTGTTTTTGTTGT+TGG | + | tig0023189:4605-4624 | Msa1406080:intron | 30.0% |
| CATAATATTATCCAACTCTG+CGG | - | tig0023189:4658-4677 | None:intergenic | 30.0% | |
| GTTGGATAATATTATGACAG+TGG | + | tig0023189:4662-4681 | Msa1406080:CDS | 30.0% | |
| TTTCTGTTCAAAAACCAATC+TGG | - | tig0023189:4714-4733 | None:intergenic | 30.0% | |
| !! | TTGGTTTTTGAACAGAAAGA+AGG | + | tig0023189:4716-4735 | Msa1406080:CDS | 30.0% |
| ATAGAATGAGGATTCACTAT+TGG | + | tig0023189:5087-5106 | Msa1406080:intron | 30.0% | |
| TAGCGCATTTCAATTAAAAC+TGG | - | tig0023189:5164-5183 | None:intergenic | 30.0% | |
| TCAATTTCCAAACACTATTG+TGG | - | tig0023189:5248-5267 | None:intergenic | 30.0% | |
| GTGTTTGGAAATTGATTATC+AGG | + | tig0023189:5253-5272 | Msa1406080:intron | 30.0% | |
| !!! | CTGCCTATATTTTAGCTTAT+GGG | - | tig0023189:5320-5339 | None:intergenic | 30.0% |
| !!! | ACTGCCTATATTTTAGCTTA+TGG | - | tig0023189:5321-5340 | None:intergenic | 30.0% |
| AAAATATAGGCAGTGAAAAC+TGG | + | tig0023189:5327-5346 | Msa1406080:intron | 30.0% | |
| AAATATAGGCAGTGAAAACT+GGG | + | tig0023189:5328-5347 | Msa1406080:intron | 30.0% | |
| !!! | ACTTGTATTGGTTTTTCTCT+TGG | + | tig0023189:5371-5390 | Msa1406080:intron | 30.0% |
| ! | TTGCATAAGCAAACTGTTTT+GGG | - | tig0023189:5463-5482 | None:intergenic | 30.0% |
| ! | TTTGCATAAGCAAACTGTTT+TGG | - | tig0023189:5464-5483 | None:intergenic | 30.0% |
| !! | ATATTTCTGAAATTGGGCAT+TGG | + | tig0023189:5560-5579 | Msa1406080:intron | 30.0% |
| !!! | GCTGGTTACTAAATTTTTTG+TGG | + | tig0023189:5582-5601 | Msa1406080:intron | 30.0% |
| !!! | GGTTACTAAATTTTTTGTGG+CGG | + | tig0023189:5585-5604 | Msa1406080:intron | 30.0% |
| ATGATTACTGCATAACAGAA+AGG | - | tig0023189:5631-5650 | None:intergenic | 30.0% | |
| ! | TTGGAGATTAGATGATTTTG+AGG | + | tig0023189:5766-5785 | Msa1406080:three_prime_UTR | 30.0% |
| TTTCCTATACAGACTTTGTA+TGG | + | tig0023189:5816-5835 | Msa1406080:three_prime_UTR | 30.0% | |
| GTGAAGAAAGAGATGAAATC+GGG | - | tig0023189:4253-4272 | None:intergenic | 35.0% | |
| TCGTGATGTATTACAGTCTT+TGG | + | tig0023189:4307-4326 | Msa1406080:intron | 35.0% | |
| !!! | TTGTTGGATTTTTTTAGGGC+TGG | + | tig0023189:4621-4640 | Msa1406080:intron | 35.0% |
| GAACAGAAAGAAGGATTACA+AGG | + | tig0023189:4725-4744 | Msa1406080:CDS | 35.0% | |
| AGAAAGAAGGATTACAAGGA+TGG | + | tig0023189:4729-4748 | Msa1406080:CDS | 35.0% | |
| CATTAGTATTATCCCTCTTC+TGG | - | tig0023189:5191-5210 | None:intergenic | 35.0% | |
| AGGGATAATACTAATGTCCA+TGG | + | tig0023189:5195-5214 | Msa1406080:intron | 35.0% | |
| TTAGCTTCCACAATAGTGTT+TGG | + | tig0023189:5238-5257 | Msa1406080:intron | 35.0% | |
| !! | ATTTGCTGGTTGACTTGTAT+TGG | + | tig0023189:5359-5378 | Msa1406080:intron | 35.0% |
| ! | TGGTTTTTCTCTTGGCTATA+TGG | + | tig0023189:5379-5398 | Msa1406080:intron | 35.0% |
| ! | TGCATAAGCAAACTGTTTTG+GGG | - | tig0023189:5462-5481 | None:intergenic | 35.0% |
| CAACCATACAAAGTCTGTAT+AGG | - | tig0023189:5822-5841 | None:intergenic | 35.0% | |
| !!! | GTGACGATTTCAGTTTTGTT+TGG | + | tig0023189:5851-5870 | Msa1406080:three_prime_UTR | 35.0% |
| GTGAAGAAAGAGATGAAATC+GGG | - | tig0023189:4253-4272 | None:intergenic | 35.0% | |
| TCGTGATGTATTACAGTCTT+TGG | + | tig0023189:4307-4326 | Msa1406080:intron | 35.0% | |
| !!! | TTGTTGGATTTTTTTAGGGC+TGG | + | tig0023189:4621-4640 | Msa1406080:intron | 35.0% |
| GAACAGAAAGAAGGATTACA+AGG | + | tig0023189:4725-4744 | Msa1406080:CDS | 35.0% | |
| AGAAAGAAGGATTACAAGGA+TGG | + | tig0023189:4729-4748 | Msa1406080:CDS | 35.0% | |
| CATTAGTATTATCCCTCTTC+TGG | - | tig0023189:5191-5210 | None:intergenic | 35.0% | |
| AGGGATAATACTAATGTCCA+TGG | + | tig0023189:5195-5214 | Msa1406080:intron | 35.0% | |
| TTAGCTTCCACAATAGTGTT+TGG | + | tig0023189:5238-5257 | Msa1406080:intron | 35.0% | |
| !! | ATTTGCTGGTTGACTTGTAT+TGG | + | tig0023189:5359-5378 | Msa1406080:intron | 35.0% |
| ! | TGGTTTTTCTCTTGGCTATA+TGG | + | tig0023189:5379-5398 | Msa1406080:intron | 35.0% |
| ! | TGCATAAGCAAACTGTTTTG+GGG | - | tig0023189:5462-5481 | None:intergenic | 35.0% |
| CAACCATACAAAGTCTGTAT+AGG | - | tig0023189:5822-5841 | None:intergenic | 35.0% | |
| !!! | GTGACGATTTCAGTTTTGTT+TGG | + | tig0023189:5851-5870 | Msa1406080:three_prime_UTR | 35.0% |
| GAAAGAGATGAAATCGGGAT+CGG | - | tig0023189:4248-4267 | None:intergenic | 40.0% | |
| GTGTTGAACACAAATGTCGA+TGG | + | tig0023189:4362-4381 | Msa1406080:CDS | 40.0% | |
| TTCGCAATGACCTCAATCAA+GGG | + | tig0023189:4401-4420 | Msa1406080:CDS | 40.0% | |
| ! | ATGACCTCAATCAAGGGTAT+TGG | + | tig0023189:4407-4426 | Msa1406080:CDS | 40.0% |
| CCTCTTGTTCATGTCAACAT+CGG | - | tig0023189:4465-4484 | None:intergenic | 40.0% | |
| GTCAATTCAAGGTTCCAGAT+TGG | + | tig0023189:4697-4716 | Msa1406080:CDS | 40.0% | |
| !! | CAGCTTCATGTCAAGTTGAT+TGG | - | tig0023189:4775-4794 | None:intergenic | 40.0% |
| ATCAACTTGACATGAAGCTG+AGG | + | tig0023189:4775-4794 | Msa1406080:CDS | 40.0% | |
| TCAACTTGACATGAAGCTGA+GGG | + | tig0023189:4776-4795 | Msa1406080:CDS | 40.0% | |
| ACAATGAAGTAGCAACTGAC+CGG | - | tig0023189:4827-4846 | None:intergenic | 40.0% | |
| ATCGAGTTCATACACTGTCA+AGG | - | tig0023189:5055-5074 | None:intergenic | 40.0% | |
| AAAGTGGTGAATCATGACAG+CGG | - | tig0023189:5136-5155 | None:intergenic | 40.0% | |
| TTCTCTTGGCTATATGGTAG+TGG | + | tig0023189:5385-5404 | Msa1406080:intron | 40.0% | |
| CTGTTATGCAGTAATCATCG+TGG | + | tig0023189:5633-5652 | Msa1406080:intron | 40.0% | |
| ! | ATGTTGTTGGTGTTTACCGT+TGG | + | tig0023189:5910-5929 | Msa1406080:intron | 40.0% |
| GAAAGAGATGAAATCGGGAT+CGG | - | tig0023189:4248-4267 | None:intergenic | 40.0% | |
| GTGTTGAACACAAATGTCGA+TGG | + | tig0023189:4362-4381 | Msa1406080:CDS | 40.0% | |
| TTCGCAATGACCTCAATCAA+GGG | + | tig0023189:4401-4420 | Msa1406080:CDS | 40.0% | |
| ! | ATGACCTCAATCAAGGGTAT+TGG | + | tig0023189:4407-4426 | Msa1406080:CDS | 40.0% |
| CCTCTTGTTCATGTCAACAT+CGG | - | tig0023189:4465-4484 | None:intergenic | 40.0% | |
| GTCAATTCAAGGTTCCAGAT+TGG | + | tig0023189:4697-4716 | Msa1406080:CDS | 40.0% | |
| !! | CAGCTTCATGTCAAGTTGAT+TGG | - | tig0023189:4775-4794 | None:intergenic | 40.0% |
| ATCAACTTGACATGAAGCTG+AGG | + | tig0023189:4775-4794 | Msa1406080:CDS | 40.0% | |
| TCAACTTGACATGAAGCTGA+GGG | + | tig0023189:4776-4795 | Msa1406080:CDS | 40.0% | |
| ACAATGAAGTAGCAACTGAC+CGG | - | tig0023189:4827-4846 | None:intergenic | 40.0% | |
| ATCGAGTTCATACACTGTCA+AGG | - | tig0023189:5055-5074 | None:intergenic | 40.0% | |
| AAAGTGGTGAATCATGACAG+CGG | - | tig0023189:5136-5155 | None:intergenic | 40.0% | |
| TTCTCTTGGCTATATGGTAG+TGG | + | tig0023189:5385-5404 | Msa1406080:intron | 40.0% | |
| CTGTTATGCAGTAATCATCG+TGG | + | tig0023189:5633-5652 | Msa1406080:intron | 40.0% | |
| ! | ATGTTGTTGGTGTTTACCGT+TGG | + | tig0023189:5910-5929 | Msa1406080:intron | 40.0% |
| !! | CATTTTAGACTAGCCGACCA+AGG | - | tig0023189:4217-4236 | None:intergenic | 45.0% |
| !! | CTTGGTCGGCTAGTCTAAAA+TGG | + | tig0023189:4215-4234 | Msa1406080:exon | 45.0% |
| GTTCGCAATGACCTCAATCA+AGG | + | tig0023189:4400-4419 | Msa1406080:CDS | 45.0% | |
| CCTTCCAATACCCTTGATTG+AGG | - | tig0023189:4414-4433 | None:intergenic | 45.0% | |
| !! | CCTCAATCAAGGGTATTGGA+AGG | + | tig0023189:4411-4430 | Msa1406080:CDS | 45.0% |
| CGCTAACATCTGCTGTAAGA+AGG | + | tig0023189:4439-4458 | Msa1406080:CDS | 45.0% | |
| CCGATGTTGACATGAACAAG+AGG | + | tig0023189:4462-4481 | Msa1406080:CDS | 45.0% | |
| TGCGAATCCTCGTCAATTCA+AGG | + | tig0023189:4686-4705 | Msa1406080:CDS | 45.0% | |
| ! | TCTGGAACCTTGAATTGACG+AGG | - | tig0023189:4696-4715 | None:intergenic | 45.0% |
| CATGAAGCTGAGGGATGATT+TGG | + | tig0023189:4785-4804 | Msa1406080:CDS | 45.0% | |
| TGGAGAGACTCAAGAAGATC+CGG | + | tig0023189:4805-4824 | Msa1406080:CDS | 45.0% | |
| ACTGGGCTGAAGTTATTTGC+TGG | + | tig0023189:5345-5364 | Msa1406080:intron | 45.0% | |
| !! | TTCTGAAATTGGGCATTGGC+TGG | + | tig0023189:5564-5583 | Msa1406080:intron | 45.0% |
| ! | GCAGTAATCATCGTGGATTG+AGG | + | tig0023189:5640-5659 | Msa1406080:intron | 45.0% |
| !! | CATTTTAGACTAGCCGACCA+AGG | - | tig0023189:4217-4236 | None:intergenic | 45.0% |
| !! | CTTGGTCGGCTAGTCTAAAA+TGG | + | tig0023189:4215-4234 | Msa1406080:exon | 45.0% |
| GTTCGCAATGACCTCAATCA+AGG | + | tig0023189:4400-4419 | Msa1406080:CDS | 45.0% | |
| CCTTCCAATACCCTTGATTG+AGG | - | tig0023189:4414-4433 | None:intergenic | 45.0% | |
| !! | CCTCAATCAAGGGTATTGGA+AGG | + | tig0023189:4411-4430 | Msa1406080:CDS | 45.0% |
| CGCTAACATCTGCTGTAAGA+AGG | + | tig0023189:4439-4458 | Msa1406080:CDS | 45.0% | |
| CCGATGTTGACATGAACAAG+AGG | + | tig0023189:4462-4481 | Msa1406080:CDS | 45.0% | |
| TGCGAATCCTCGTCAATTCA+AGG | + | tig0023189:4686-4705 | Msa1406080:CDS | 45.0% | |
| ! | TCTGGAACCTTGAATTGACG+AGG | - | tig0023189:4696-4715 | None:intergenic | 45.0% |
| CATGAAGCTGAGGGATGATT+TGG | + | tig0023189:4785-4804 | Msa1406080:CDS | 45.0% | |
| TGGAGAGACTCAAGAAGATC+CGG | + | tig0023189:4805-4824 | Msa1406080:CDS | 45.0% | |
| ACTGGGCTGAAGTTATTTGC+TGG | + | tig0023189:5345-5364 | Msa1406080:intron | 45.0% | |
| !! | TTCTGAAATTGGGCATTGGC+TGG | + | tig0023189:5564-5583 | Msa1406080:intron | 45.0% |
| ! | GCAGTAATCATCGTGGATTG+AGG | + | tig0023189:5640-5659 | Msa1406080:intron | 45.0% |
| TCACCGTTCACAGTGAACCT+TGG | + | tig0023189:4197-4216 | Msa1406080:five_prime_UTR | 50.0% | |
| CGACCAAGGTTCACTGTGAA+CGG | - | tig0023189:4203-4222 | None:intergenic | 50.0% | |
| CGTTCACAGTGAACCTTGGT+CGG | + | tig0023189:4201-4220 | Msa1406080:five_prime_UTR | 50.0% | |
| ! | TGAATTGAGTGCCGCAGAGT+TGG | + | tig0023189:4644-4663 | Msa1406080:CDS | 50.0% |
| AATGCGCTAGACACCAGAAG+AGG | + | tig0023189:5175-5194 | Msa1406080:intron | 50.0% | |
| ATGCGCTAGACACCAGAAGA+GGG | + | tig0023189:5176-5195 | Msa1406080:intron | 50.0% | |
| ! | ATCGTGGATTGAGGCACTAC+TGG | + | tig0023189:5649-5668 | Msa1406080:CDS | 50.0% |
| ! | TCGTGGATTGAGGCACTACT+GGG | + | tig0023189:5650-5669 | Msa1406080:CDS | 50.0% |
| TATGCTGACCACGAACACGA+AGG | - | tig0023189:5677-5696 | None:intergenic | 50.0% | |
| GGTCAGCATACCAAGACTAC+TGG | + | tig0023189:5687-5706 | Msa1406080:CDS | 50.0% | |
| CACCAACTGTCTTTCCTCTG+CGG | - | tig0023189:5713-5732 | None:intergenic | 50.0% | |
| TCACCGTTCACAGTGAACCT+TGG | + | tig0023189:4197-4216 | Msa1406080:five_prime_UTR | 50.0% | |
| CGACCAAGGTTCACTGTGAA+CGG | - | tig0023189:4203-4222 | None:intergenic | 50.0% | |
| CGTTCACAGTGAACCTTGGT+CGG | + | tig0023189:4201-4220 | Msa1406080:five_prime_UTR | 50.0% | |
| ! | TGAATTGAGTGCCGCAGAGT+TGG | + | tig0023189:4644-4663 | Msa1406080:CDS | 50.0% |
| AATGCGCTAGACACCAGAAG+AGG | + | tig0023189:5175-5194 | Msa1406080:intron | 50.0% | |
| ATGCGCTAGACACCAGAAGA+GGG | + | tig0023189:5176-5195 | Msa1406080:intron | 50.0% | |
| ! | ATCGTGGATTGAGGCACTAC+TGG | + | tig0023189:5649-5668 | Msa1406080:CDS | 50.0% |
| ! | TCGTGGATTGAGGCACTACT+GGG | + | tig0023189:5650-5669 | Msa1406080:CDS | 50.0% |
| TATGCTGACCACGAACACGA+AGG | - | tig0023189:5677-5696 | None:intergenic | 50.0% | |
| GGTCAGCATACCAAGACTAC+TGG | + | tig0023189:5687-5706 | Msa1406080:CDS | 50.0% | |
| CACCAACTGTCTTTCCTCTG+CGG | - | tig0023189:5713-5732 | None:intergenic | 50.0% | |
| ! | ATCATGACAGCGGAGGTGCA+TGG | - | tig0023189:5126-5145 | None:intergenic | 55.0% |
| GTGGTGAATCATGACAGCGG+AGG | - | tig0023189:5133-5152 | None:intergenic | 55.0% | |
| !! | TCCATGGCTTTGATTGCGCG+TGG | + | tig0023189:5211-5230 | Msa1406080:intron | 55.0% |
| TCCACGCGCAATCAAAGCCA+TGG | - | tig0023189:5215-5234 | None:intergenic | 55.0% | |
| ! | CGTGGATTGAGGCACTACTG+GGG | + | tig0023189:5651-5670 | Msa1406080:CDS | 55.0% |
| ! | ATCATGACAGCGGAGGTGCA+TGG | - | tig0023189:5126-5145 | None:intergenic | 55.0% |
| GTGGTGAATCATGACAGCGG+AGG | - | tig0023189:5133-5152 | None:intergenic | 55.0% | |
| !! | TCCATGGCTTTGATTGCGCG+TGG | + | tig0023189:5211-5230 | Msa1406080:intron | 55.0% |
| TCCACGCGCAATCAAAGCCA+TGG | - | tig0023189:5215-5234 | None:intergenic | 55.0% | |
| ! | CGTGGATTGAGGCACTACTG+GGG | + | tig0023189:5651-5670 | Msa1406080:CDS | 55.0% |
| CACAGCGACACACACACCCT+TGG | + | tig0023189:4165-4184 | Msa1406080:five_prime_UTR | 60.0% | |
| AGCGACACACACACCCTTGG+CGG | + | tig0023189:4168-4187 | Msa1406080:five_prime_UTR | 60.0% | |
| ACGGTGATGACTGCCGCCAA+GGG | - | tig0023189:4184-4203 | None:intergenic | 60.0% | |
| AACGGTGATGACTGCCGCCA+AGG | - | tig0023189:4185-4204 | None:intergenic | 60.0% | |
| TACTGGGGCCTTCGTGTTCG+TGG | + | tig0023189:5666-5685 | Msa1406080:CDS | 60.0% | |
| ACCAAGACTACTGGCCGCAG+AGG | + | tig0023189:5696-5715 | Msa1406080:CDS | 60.0% | |
| TCCTCTGCGGCCAGTAGTCT+TGG | - | tig0023189:5700-5719 | None:intergenic | 60.0% | |
| GGCCGCAGAGGAAAGACAGT+TGG | + | tig0023189:5708-5727 | Msa1406080:CDS | 60.0% | |
| CACAGCGACACACACACCCT+TGG | + | tig0023189:4165-4184 | Msa1406080:five_prime_UTR | 60.0% | |
| AGCGACACACACACCCTTGG+CGG | + | tig0023189:4168-4187 | Msa1406080:five_prime_UTR | 60.0% | |
| ACGGTGATGACTGCCGCCAA+GGG | - | tig0023189:4184-4203 | None:intergenic | 60.0% | |
| AACGGTGATGACTGCCGCCA+AGG | - | tig0023189:4185-4204 | None:intergenic | 60.0% | |
| TACTGGGGCCTTCGTGTTCG+TGG | + | tig0023189:5666-5685 | Msa1406080:CDS | 60.0% | |
| ACCAAGACTACTGGCCGCAG+AGG | + | tig0023189:5696-5715 | Msa1406080:CDS | 60.0% | |
| TCCTCTGCGGCCAGTAGTCT+TGG | - | tig0023189:5700-5719 | None:intergenic | 60.0% | |
| GGCCGCAGAGGAAAGACAGT+TGG | + | tig0023189:5708-5727 | Msa1406080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023189 | gene | 4159 | 6012 | 4159 | ID=Msa1406080;Name=Msa1406080 |
| tig0023189 | mRNA | 4159 | 6012 | 4159 | ID=Msa1406080-mRNA-1;Parent=Msa1406080;Name=Msa1406080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=75|1|1|1|0.75|0.6|5|233|152 |
| tig0023189 | exon | 4159 | 4236 | 4159 | ID=Msa1406080-mRNA-1:exon:24403;Parent=Msa1406080-mRNA-1 |
| tig0023189 | exon | 4323 | 4483 | 4323 | ID=Msa1406080-mRNA-1:exon:24404;Parent=Msa1406080-mRNA-1 |
| tig0023189 | exon | 4638 | 4826 | 4638 | ID=Msa1406080-mRNA-1:exon:24405;Parent=Msa1406080-mRNA-1 |
| tig0023189 | exon | 5644 | 5914 | 5644 | ID=Msa1406080-mRNA-1:exon:24406;Parent=Msa1406080-mRNA-1 |
| tig0023189 | exon | 5945 | 6012 | 5945 | ID=Msa1406080-mRNA-1:exon:24407;Parent=Msa1406080-mRNA-1 |
| tig0023189 | five_prime_UTR | 4159 | 4233 | 4159 | ID=Msa1406080-mRNA-1:five_prime_utr;Parent=Msa1406080-mRNA-1 |
| tig0023189 | CDS | 4234 | 4236 | 4234 | ID=Msa1406080-mRNA-1:cds;Parent=Msa1406080-mRNA-1 |
| tig0023189 | CDS | 4323 | 4483 | 4323 | ID=Msa1406080-mRNA-1:cds;Parent=Msa1406080-mRNA-1 |
| tig0023189 | CDS | 4638 | 4826 | 4638 | ID=Msa1406080-mRNA-1:cds;Parent=Msa1406080-mRNA-1 |
| tig0023189 | CDS | 5644 | 5749 | 5644 | ID=Msa1406080-mRNA-1:cds;Parent=Msa1406080-mRNA-1 |
| tig0023189 | three_prime_UTR | 5750 | 5914 | 5750 | ID=Msa1406080-mRNA-1:three_prime_utr;Parent=Msa1406080-mRNA-1 |
| tig0023189 | three_prime_UTR | 5945 | 6012 | 5945 | ID=Msa1406080-mRNA-1:three_prime_utr;Parent=Msa1406080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
