AlfalfaGEDB | Msa1096900

M. sativa cultivar zhongmu-4 / Msa1096900

KEGG: K02908
GO: GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01248.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1096900	XP_003621633.1	100.000	112	0	0	1	112	1	112	1.62e-75	229

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1096900	sp\|O49884\|RL30_LUPLU	99.107	112	1	0	1	112	1	112	4.93e-78	228

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1096900	G7KSW7	100.000	112	0	0	1	112	1	112	7.76e-76	229

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa1096900	0.808086	3.680245e-50	-8.615850e-47
Msa0032780	Msa1096900	0.811512	6.745865e-51	-8.615850e-47
Msa0040220	Msa1096900	0.812885	3.384691e-51	-8.615850e-47
Msa0072570	Msa1096900	0.807760	4.317824e-50	-8.615850e-47
Msa0087910	Msa1096900	0.802704	4.945509e-49	-8.615850e-47
Msa0114570	Msa1096900	0.830317	3.143433e-55	-8.615850e-47
Msa0622230	Msa1096900	0.811642	6.321784e-51	-8.615850e-47
Msa0643820	Msa1096900	0.811903	5.547582e-51	-8.615850e-47
Msa0653060	Msa1096900	0.815666	8.225283e-52	-8.615850e-47
Msa0705800	Msa1096900	0.868349	6.975768e-66	-8.615850e-47
Msa0712610	Msa1096900	0.836250	1.044395e-56	-8.615850e-47
Msa0766080	Msa1096900	0.824026	1.008610e-53	-8.615850e-47
Msa0781080	Msa1096900	0.856759	2.588141e-62	-8.615850e-47
Msa0788380	Msa1096900	0.807860	4.112580e-50	-8.615850e-47
Msa0822580	Msa1096900	0.804103	2.536800e-49	-8.615850e-47
Msa0827380	Msa1096900	0.874450	6.691712e-68	-8.615850e-47
Msa0133540	Msa1096900	0.803057	4.179286e-49	-8.615850e-47
Msa0172900	Msa1096900	0.813277	2.777199e-51	-8.615850e-47
Msa0172930	Msa1096900	0.812340	4.454480e-51	-8.615850e-47
Msa0181490	Msa1096900	0.813587	2.374145e-51	-8.615850e-47
Msa0191450	Msa1096900	0.834200	3.438885e-56	-8.615850e-47
Msa0191550	Msa1096900	0.825820	3.806038e-54	-8.615850e-47
Msa0192750	Msa1096900	0.822340	2.496595e-53	-8.615850e-47
Msa0194940	Msa1096900	0.831310	1.795210e-55	-8.615850e-47
Msa0210330	Msa1096900	0.808740	2.670001e-50	-8.615850e-47
Msa0210360	Msa1096900	0.802299	5.991633e-49	-8.615850e-47
Msa0235050	Msa1096900	0.802246	6.143763e-49	-8.615850e-47
Msa0426090	Msa1096900	0.809201	2.127015e-50	-8.615850e-47
Msa0471880	Msa1096900	0.801998	6.909813e-49	-8.615850e-47
Msa0472480	Msa1096900	0.805108	1.565278e-49	-8.615850e-47
Msa0475810	Msa1096900	0.809560	1.781387e-50	-8.615850e-47
Msa0481520	Msa1096900	0.847919	8.524203e-60	-8.615850e-47
Msa0481850	Msa1096900	0.842917	1.929457e-58	-8.615850e-47
Msa1021120	Msa1096900	0.809287	2.038968e-50	-8.615850e-47
Msa1037290	Msa1096900	0.843182	1.639323e-58	-8.615850e-47
Msa1039520	Msa1096900	0.804671	1.931632e-49	-8.615850e-47
Msa1040160	Msa1096900	0.823915	1.070832e-53	-8.615850e-47
Msa1041680	Msa1096900	0.814207	1.732398e-51	-8.615850e-47
Msa1078870	Msa1096900	0.805331	1.405770e-49	-8.615850e-47
Msa1078980	Msa1096900	0.807418	5.104969e-50	-8.615850e-47
Msa1080350	Msa1096900	0.856025	4.250853e-62	-8.615850e-47
Msa1082170	Msa1096900	0.841869	3.657769e-58	-8.615850e-47
Msa1083370	Msa1096900	0.819925	8.988534e-53	-8.615850e-47
Msa1096900	Msa1125860	0.849262	3.620246e-60	-8.615850e-47
Msa1096900	Msa1126060	0.848118	7.512018e-60	-8.615850e-47
Msa1096900	Msa1126520	0.839199	1.827971e-57	-8.615850e-47
Msa1096900	Msa1164150	0.842060	3.255511e-58	-8.615850e-47
Msa1096900	Msa1165640	0.814942	1.191624e-51	-8.615850e-47
Msa1096900	Msa1166570	0.814133	1.799092e-51	-8.615850e-47
Msa1096900	Msa1167540	0.801372	9.287312e-49	-8.615850e-47
Msa1096900	Msa1218170	0.817014	4.108432e-52	-8.615850e-47
Msa1096900	Msa1228490	0.824609	7.355913e-54	-8.615850e-47
Msa1096900	Msa1299590	0.800015	1.757407e-48	-8.615850e-47
Msa1096900	Msa1311400	0.832550	8.866746e-56	-8.615850e-47
Msa1096900	Msa1356790	0.837132	6.224802e-57	-8.615850e-47
Msa1096900	Msa1362790	0.807638	4.583718e-50	-8.615850e-47
Msa1096900	Msa1368920	0.842182	3.022003e-58	-8.615850e-47
Msa1096900	Msa1392590	0.803138	4.021890e-49	-8.615850e-47
Msa1096900	Msa1403910	0.803784	2.954706e-49	-8.615850e-47
Msa1096900	Msa1406080	0.855497	6.061906e-62	-8.615850e-47
Msa1096900	Msa1418770	0.820337	7.234029e-53	-8.615850e-47
Msa1096900	Msa1426120	0.811733	6.041092e-51	-8.615850e-47
Msa0297830	Msa1096900	0.847708	9.748533e-60	-8.615850e-47
Msa0301220	Msa1096900	0.866962	1.941855e-65	-8.615850e-47
Msa0306690	Msa1096900	0.806561	7.747765e-50	-8.615850e-47
Msa0315430	Msa1096900	0.816493	5.374445e-52	-8.615850e-47
Msa0335840	Msa1096900	0.854931	8.860634e-62	-8.615850e-47
Msa0529900	Msa1096900	0.812366	4.395630e-51	-8.615850e-47
Msa0540480	Msa1096900	0.806898	6.578752e-50	-8.615850e-47
Msa0550420	Msa1096900	0.801042	1.084940e-48	-8.615850e-47
Msa0584030	Msa1096900	0.801201	1.006821e-48	-8.615850e-47
Msa0596370	Msa1096900	0.808139	3.586015e-50	-8.615850e-47
Msa0861320	Msa1096900	0.856729	2.641694e-62	-8.615850e-47
Msa0876170	Msa1096900	0.817372	3.411592e-52	-8.615850e-47
Msa0915540	Msa1096900	0.827566	1.457245e-54	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1096900	MtrunA17_Chr7g0221511	100.000	112	0	1	112	1	112	1.49e-79	229
Msa1096900	MtrunA17_Chr6g0457261	98.214	112	2	1	112	1	112	3.19e-78	225
Msa1096900	MtrunA17_Chr5g0441211	92.857	112	8	1	112	1	112	1.01e-74	216

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1096900	AT1G36240.1	88.393	112	13	1	112	1	112	9.66e-72	209
Msa1096900	AT1G77940.1	87.500	112	14	1	112	1	112	6.38e-71	207
Msa1096900	AT3G18740.1	87.500	112	14	1	112	1	112	7.28e-71	207

Find 44 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGTACGATGCTTGTTATTT+TGG	0.194505	7_3:-21949149	Msa1096900:three_prime_UTR
TGAACTAAATTGATACTATT+GGG	0.255635	7_3:+21948975	None:intergenic
GCCACCATTGTTGAAGGTTT+GGG	0.276339	7_3:+21951017	None:intergenic
CTGAACTAAATTGATACTAT+TGG	0.294769	7_3:+21948974	None:intergenic
GGCCACCATTGTTGAAGGTT+TGG	0.325431	7_3:+21951016	None:intergenic
CTAACAACTGTCCTCCTTTG+AGG	0.365472	7_3:-21950427	Msa1096900:CDS
GACATCATCAAGACAATTCC+TGG	0.382525	7_3:-21949264	Msa1096900:CDS
AAAATTCTAGTTGTAGACTA+TGG	0.397229	7_3:-21949171	Msa1096900:three_prime_UTR
TTTGCGGCCACCATTGTTGA+AGG	0.420354	7_3:+21951011	None:intergenic
TTACTCAATGCTCAATCAGC+TGG	0.426863	7_3:+21949121	None:intergenic
ACAACTTACTTCCATTGTAA+TGG	0.429111	7_3:+21950357	None:intergenic
CTCATGAGAGCATCAACAAC+AGG	0.462326	7_3:-21950874	Msa1096900:CDS
AATTACCTTTGGAACTCCTA+AGG	0.463721	7_3:+21950792	None:intergenic
TGCCTCAGCATTGTTGATCC+TGG	0.466033	7_3:-21949380	Msa1096900:intron
GAAGCTTACGGTCTTCTTTG+CGG	0.470686	7_3:+21950995	None:intergenic
TACTACGTTTACTGATCTCC+AGG	0.471605	7_3:+21949246	None:intergenic
ATTACCTTTGGAACTCCTAA+GGG	0.478678	7_3:+21950793	None:intergenic
AAAGTGTAAACACTGCCTCT+AGG	0.491840	7_3:+21951078	None:intergenic
AAGAGTGGAAAATATACCCT+TGG	0.505811	7_3:-21950836	Msa1096900:CDS
AAACCGTTCTCAAATCCCTT+AGG	0.509696	7_3:-21950808	Msa1096900:CDS
ACATAGAATTGAAAACATCA+TGG	0.511457	7_3:+21949214	None:intergenic
CCACCATTGTTGAAGGTTTG+GGG	0.517595	7_3:+21951018	None:intergenic
GAACTAAATTGATACTATTG+GGG	0.525116	7_3:+21948976	None:intergenic
TATGCTATGTTGGCTAAGGT+TGG	0.529938	7_3:-21950386	Msa1096900:CDS
ATCATAGACAATGTTGACCT+TGG	0.543023	7_3:-21949434	Msa1096900:intron
CTCGCTCTTGTCATGAAGAG+TGG	0.545906	7_3:-21950851	Msa1096900:CDS
TACTCAATGCTCAATCAGCT+GGG	0.550544	7_3:+21949122	None:intergenic
AATTGAGTACTATGCTATGT+TGG	0.552970	7_3:-21950396	Msa1096900:CDS
AGAGTGGAAAATATACCCTT+GGG	0.553555	7_3:-21950835	Msa1096900:CDS
GTACTATGCTATGTTGGCTA+AGG	0.556485	7_3:-21950390	Msa1096900:CDS
GTTGACCTTGGCACTGCTTG+CGG	0.567329	7_3:-21949422	Msa1096900:CDS
CATAGAATTGAAAACATCAT+GGG	0.585069	7_3:+21949215	None:intergenic
ATTTCAGACTTCCTCAAAGG+AGG	0.587118	7_3:+21950416	None:intergenic
ACTCCTAAGGGATTTGAGAA+CGG	0.591174	7_3:+21950805	None:intergenic
GTATCAATTTAGTTCAGTTG+AGG	0.593755	7_3:-21948968	Msa1096900:three_prime_UTR
TCACCCCAAACCTTCAACAA+TGG	0.596716	7_3:-21951021	Msa1096900:exon
TCAATTTCAGACTTCCTCAA+AGG	0.597003	7_3:+21950413	None:intergenic
GTTGGAGTTCACCATTACAA+TGG	0.600433	7_3:-21950368	Msa1096900:CDS
AAATCCCTTAGGAGTTCCAA+AGG	0.605938	7_3:-21950797	Msa1096900:intron
AGGAATTGTCTTGATGATGT+CGG	0.611366	7_3:+21949266	None:intergenic
ACTTTCCGCAAGCAGTGCCA+AGG	0.618915	7_3:+21949417	None:intergenic
CCCCAAACCTTCAACAATGG+TGG	0.627586	7_3:-21951018	Msa1096900:exon
TACCAGGATCAACAATGCTG+AGG	0.662178	7_3:+21949378	None:intergenic
GATGCGCAGAGAAGAAAATG+CGG	0.718290	7_3:+21951044	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATATCAAATAAAATTATAG+AGG	+	chr7_3:21950723-21950742	None:intergenic	10.0%
!!!	CTATAATTTTATTTGATATT+TGG	-	chr7_3:21950723-21950742	Msa1096900:intron	10.0%
!!	AATATCAAATAAAATTATAG+AGG	+	chr7_3:21950723-21950742	None:intergenic	10.0%
!!!	CTATAATTTTATTTGATATT+TGG	-	chr7_3:21950723-21950742	Msa1096900:intron	10.0%
!!	AAATTAATTTAAATTGTCAG+TGG	-	chr7_3:21949527-21949546	Msa1096900:intron	15.0%
!!	AAATTAATTTAAATTGTCAG+TGG	-	chr7_3:21949527-21949546	Msa1096900:intron	15.0%
!!	TGGATAAAAAAAATTACCTT+TGG	+	chr7_3:21949249-21949268	None:intergenic	20.0%
!!	TACATATTTCAACAACAAAA+TGG	+	chr7_3:21949269-21949288	None:intergenic	20.0%
!!!	TTTGTTGTTGAAATATGTAT+TGG	-	chr7_3:21949270-21949289	Msa1096900:CDS	20.0%
!!!	TTGTTGTTGAAATATGTATT+GGG	-	chr7_3:21949271-21949290	Msa1096900:CDS	20.0%
!!!	TTTTGATTTGATTATTCTGT+AGG	-	chr7_3:21949560-21949579	Msa1096900:intron	20.0%
!!!	TTTGATTTGATTATTCTGTA+GGG	-	chr7_3:21949561-21949580	Msa1096900:intron	20.0%
!!!	AGCTAGTTATACTTTAAAAA+TGG	-	chr7_3:21949900-21949919	Msa1096900:intron	20.0%
!!	ATGTTTGGATTAATGATATA+GGG	+	chr7_3:21949957-21949976	None:intergenic	20.0%
!!	TATGTTTGGATTAATGATAT+AGG	+	chr7_3:21949958-21949977	None:intergenic	20.0%
!!	TTAATCCAAACATAATGTTA+CGG	-	chr7_3:21949964-21949983	Msa1096900:intron	20.0%
!!	TGTTGAAAGAATATTATACA+TGG	-	chr7_3:21950061-21950080	Msa1096900:intron	20.0%
!!	TACTGAAAAAATATTATACG+TGG	-	chr7_3:21950115-21950134	Msa1096900:intron	20.0%
!!!	GACTTAATTTTATAAGATTC+TGG	-	chr7_3:21950169-21950188	Msa1096900:intron	20.0%
!!	TATAATTATCTATCAGTAGT+TGG	-	chr7_3:21950274-21950293	Msa1096900:intron	20.0%
!!	TGAACTAAATTGATACTATT+GGG	+	chr7_3:21951055-21951074	None:intergenic	20.0%
!!	TGGATAAAAAAAATTACCTT+TGG	+	chr7_3:21949249-21949268	None:intergenic	20.0%
!!	TACATATTTCAACAACAAAA+TGG	+	chr7_3:21949269-21949288	None:intergenic	20.0%
!!!	TTTGTTGTTGAAATATGTAT+TGG	-	chr7_3:21949270-21949289	Msa1096900:CDS	20.0%
!!!	TTGTTGTTGAAATATGTATT+GGG	-	chr7_3:21949271-21949290	Msa1096900:CDS	20.0%
!!!	TTTTGATTTGATTATTCTGT+AGG	-	chr7_3:21949560-21949579	Msa1096900:intron	20.0%
!!!	TTTGATTTGATTATTCTGTA+GGG	-	chr7_3:21949561-21949580	Msa1096900:intron	20.0%
!!!	AGCTAGTTATACTTTAAAAA+TGG	-	chr7_3:21949900-21949919	Msa1096900:intron	20.0%
!!	ATGTTTGGATTAATGATATA+GGG	+	chr7_3:21949957-21949976	None:intergenic	20.0%
!!	TATGTTTGGATTAATGATAT+AGG	+	chr7_3:21949958-21949977	None:intergenic	20.0%
!!	TTAATCCAAACATAATGTTA+CGG	-	chr7_3:21949964-21949983	Msa1096900:intron	20.0%
!!	TGTTGAAAGAATATTATACA+TGG	-	chr7_3:21950061-21950080	Msa1096900:intron	20.0%
!!	TACTGAAAAAATATTATACG+TGG	-	chr7_3:21950115-21950134	Msa1096900:intron	20.0%
!!!	GACTTAATTTTATAAGATTC+TGG	-	chr7_3:21950169-21950188	Msa1096900:intron	20.0%
!!	TATAATTATCTATCAGTAGT+TGG	-	chr7_3:21950274-21950293	Msa1096900:intron	20.0%
!!	TGAACTAAATTGATACTATT+GGG	+	chr7_3:21951055-21951074	None:intergenic	20.0%
!	TATGATTTCGTTTCAGATTT+AGG	-	chr7_3:21949083-21949102	Msa1096900:three_prime_UTR	25.0%
!	ATGATTTCGTTTCAGATTTA+GGG	-	chr7_3:21949084-21949103	Msa1096900:three_prime_UTR	25.0%
!	TATGAATTGATTAGATTGCA+AGG	-	chr7_3:21949317-21949336	Msa1096900:intron	25.0%
!!	TTTTGTAATGTTGAATTTGC+TGG	-	chr7_3:21949489-21949508	Msa1096900:intron	25.0%
!	TTCAATGTTAATATGCATTC+AGG	-	chr7_3:21949729-21949748	Msa1096900:intron	25.0%
!	TCAATGTTAATATGCATTCA+GGG	-	chr7_3:21949730-21949749	Msa1096900:intron	25.0%
!	TAGAATGAAATGAAATGTAG+TGG	-	chr7_3:21949860-21949879	Msa1096900:intron	25.0%
!!!	TGAAATGTAGTGGATTAAAA+TGG	-	chr7_3:21949870-21949889	Msa1096900:intron	25.0%
!!!	AATATTTTTTCAGTACGACA+GGG	+	chr7_3:21950110-21950129	None:intergenic	25.0%
!!!	TAATATTTTTTCAGTACGAC+AGG	+	chr7_3:21950111-21950130	None:intergenic	25.0%
!!	TACATTAACAGAAGCATATT+TGG	+	chr7_3:21950332-21950351	None:intergenic	25.0%
!	TAAGAAGAATTCCAACAATT+TGG	+	chr7_3:21950474-21950493	None:intergenic	25.0%
!!!	ATTTGATATTTGGTGTTTTC+AGG	-	chr7_3:21950733-21950752	Msa1096900:intron	25.0%
!	CATAGAATTGAAAACATCAT+GGG	+	chr7_3:21950815-21950834	None:intergenic	25.0%
!	ACATAGAATTGAAAACATCA+TGG	+	chr7_3:21950816-21950835	None:intergenic	25.0%
!!	AAAATTCTAGTTGTAGACTA+TGG	-	chr7_3:21950856-21950875	Msa1096900:CDS	25.0%
!	GAACTAAATTGATACTATTG+GGG	+	chr7_3:21951054-21951073	None:intergenic	25.0%
!	CTGAACTAAATTGATACTAT+TGG	+	chr7_3:21951056-21951075	None:intergenic	25.0%
!	TATGATTTCGTTTCAGATTT+AGG	-	chr7_3:21949083-21949102	Msa1096900:three_prime_UTR	25.0%
!	ATGATTTCGTTTCAGATTTA+GGG	-	chr7_3:21949084-21949103	Msa1096900:three_prime_UTR	25.0%
!	TATGAATTGATTAGATTGCA+AGG	-	chr7_3:21949317-21949336	Msa1096900:intron	25.0%
!!	TTTTGTAATGTTGAATTTGC+TGG	-	chr7_3:21949489-21949508	Msa1096900:intron	25.0%
!	TTCAATGTTAATATGCATTC+AGG	-	chr7_3:21949729-21949748	Msa1096900:intron	25.0%
!	TCAATGTTAATATGCATTCA+GGG	-	chr7_3:21949730-21949749	Msa1096900:intron	25.0%
!	TAGAATGAAATGAAATGTAG+TGG	-	chr7_3:21949860-21949879	Msa1096900:intron	25.0%
!!!	TGAAATGTAGTGGATTAAAA+TGG	-	chr7_3:21949870-21949889	Msa1096900:intron	25.0%
!!!	AATATTTTTTCAGTACGACA+GGG	+	chr7_3:21950110-21950129	None:intergenic	25.0%
!!!	TAATATTTTTTCAGTACGAC+AGG	+	chr7_3:21950111-21950130	None:intergenic	25.0%
!!	TACATTAACAGAAGCATATT+TGG	+	chr7_3:21950332-21950351	None:intergenic	25.0%
!	TAAGAAGAATTCCAACAATT+TGG	+	chr7_3:21950474-21950493	None:intergenic	25.0%
!!!	ATTTGATATTTGGTGTTTTC+AGG	-	chr7_3:21950733-21950752	Msa1096900:intron	25.0%
!	CATAGAATTGAAAACATCAT+GGG	+	chr7_3:21950815-21950834	None:intergenic	25.0%
!	ACATAGAATTGAAAACATCA+TGG	+	chr7_3:21950816-21950835	None:intergenic	25.0%
!!	AAAATTCTAGTTGTAGACTA+TGG	-	chr7_3:21950856-21950875	Msa1096900:CDS	25.0%
!	GAACTAAATTGATACTATTG+GGG	+	chr7_3:21951054-21951073	None:intergenic	25.0%
!	CTGAACTAAATTGATACTAT+TGG	+	chr7_3:21951056-21951075	None:intergenic	25.0%
!	TGCAAGGACTTATTTGAAAT+TGG	-	chr7_3:21949333-21949352	Msa1096900:intron	30.0%
	AATTGAGTACTATGCTATGT+TGG	-	chr7_3:21949631-21949650	Msa1096900:intron	30.0%
	ACAACTTACTTCCATTGTAA+TGG	+	chr7_3:21949673-21949692	None:intergenic	30.0%
	TTAATGACACAGAGAAGTAA+AGG	+	chr7_3:21949706-21949725	None:intergenic	30.0%
!	TGTTGTGTTTTTCTTTGCTT+TGG	-	chr7_3:21949791-21949810	Msa1096900:intron	30.0%
	TTTGGATTAATGATATAGGG+TGG	+	chr7_3:21949954-21949973	None:intergenic	30.0%
	ATTGTGTATGTATACCCTTA+TGG	-	chr7_3:21949999-21950018	Msa1096900:intron	30.0%
	ATTATTACACGTGACCATAA+GGG	+	chr7_3:21950016-21950035	None:intergenic	30.0%
	AATTATTACACGTGACCATA+AGG	+	chr7_3:21950017-21950036	None:intergenic	30.0%
!!	TTGTTGTTTCTCCAAATTGT+TGG	-	chr7_3:21950460-21950479	Msa1096900:intron	30.0%
	TAAAGAAAGCAACATATACC+AGG	+	chr7_3:21950668-21950687	None:intergenic	30.0%
!!!	TGTACGATGCTTGTTATTTT+GGG	-	chr7_3:21950879-21950898	Msa1096900:CDS	30.0%
!	GTATCAATTTAGTTCAGTTG+AGG	-	chr7_3:21951059-21951078	Msa1096900:five_prime_UTR	30.0%
!	TGCAAGGACTTATTTGAAAT+TGG	-	chr7_3:21949333-21949352	Msa1096900:intron	30.0%
	AATTGAGTACTATGCTATGT+TGG	-	chr7_3:21949631-21949650	Msa1096900:intron	30.0%
	ACAACTTACTTCCATTGTAA+TGG	+	chr7_3:21949673-21949692	None:intergenic	30.0%
	TTAATGACACAGAGAAGTAA+AGG	+	chr7_3:21949706-21949725	None:intergenic	30.0%
!	TGTTGTGTTTTTCTTTGCTT+TGG	-	chr7_3:21949791-21949810	Msa1096900:intron	30.0%
	TTTGGATTAATGATATAGGG+TGG	+	chr7_3:21949954-21949973	None:intergenic	30.0%
	ATTGTGTATGTATACCCTTA+TGG	-	chr7_3:21949999-21950018	Msa1096900:intron	30.0%
	ATTATTACACGTGACCATAA+GGG	+	chr7_3:21950016-21950035	None:intergenic	30.0%
	AATTATTACACGTGACCATA+AGG	+	chr7_3:21950017-21950036	None:intergenic	30.0%
!!	TTGTTGTTTCTCCAAATTGT+TGG	-	chr7_3:21950460-21950479	Msa1096900:intron	30.0%
	TAAAGAAAGCAACATATACC+AGG	+	chr7_3:21950668-21950687	None:intergenic	30.0%
!!!	TGTACGATGCTTGTTATTTT+GGG	-	chr7_3:21950879-21950898	Msa1096900:CDS	30.0%
!	GTATCAATTTAGTTCAGTTG+AGG	-	chr7_3:21951059-21951078	Msa1096900:five_prime_UTR	30.0%
	TGCTGAATGAAAGAAGCTTA+CGG	+	chr7_3:21949047-21949066	None:intergenic	35.0%
	AAGAGTGGAAAATATACCCT+TGG	-	chr7_3:21949191-21949210	Msa1096900:three_prime_UTR	35.0%
	AGAGTGGAAAATATACCCTT+GGG	-	chr7_3:21949192-21949211	Msa1096900:three_prime_UTR	35.0%
!!	ATTACCTTTGGAACTCCTAA+GGG	+	chr7_3:21949237-21949256	None:intergenic	35.0%
!!	AATTACCTTTGGAACTCCTA+AGG	+	chr7_3:21949238-21949257	None:intergenic	35.0%
	TCAATTTCAGACTTCCTCAA+AGG	+	chr7_3:21949617-21949636	None:intergenic	35.0%
	TATGCATTCAGGGATTGTTT+AGG	-	chr7_3:21949740-21949759	Msa1096900:intron	35.0%
	TGTGACCGTAACATTATGTT+TGG	+	chr7_3:21949972-21949991	None:intergenic	35.0%
	ATTTGATCTTATGCTGCTGT+TGG	-	chr7_3:21950208-21950227	Msa1096900:intron	35.0%
	TTTGATCTTATGCTGCTGTT+GGG	-	chr7_3:21950209-21950228	Msa1096900:intron	35.0%
	TATCTATCAGTAGTTGGATG+TGG	-	chr7_3:21950280-21950299	Msa1096900:intron	35.0%
!	TGGATGTGGAACTAATTTTG+AGG	-	chr7_3:21950294-21950313	Msa1096900:intron	35.0%
!	GGATGTGGAACTAATTTTGA+GGG	-	chr7_3:21950295-21950314	Msa1096900:intron	35.0%
!	ACTGCATATGCTTAGTTTGA+TGG	-	chr7_3:21950366-21950385	Msa1096900:CDS	35.0%
!	ATGGCTTAGTTTGATGATTG+TGG	-	chr7_3:21950385-21950404	Msa1096900:CDS	35.0%
!!	ACAATAACAAGTGCTGATCA+AGG	+	chr7_3:21950430-21950449	None:intergenic	35.0%
!	TCTGTTATCAGTTGACTCTA+AGG	-	chr7_3:21950514-21950533	Msa1096900:intron	35.0%
	ATCATAGACAATGTTGACCT+TGG	-	chr7_3:21950593-21950612	Msa1096900:intron	35.0%
!!	AGGAATTGTCTTGATGATGT+CGG	+	chr7_3:21950764-21950783	None:intergenic	35.0%
!!!	GTGTACGATGCTTGTTATTT+TGG	-	chr7_3:21950878-21950897	Msa1096900:CDS	35.0%
	TGTGTTTGCTTGCAAAAAAG+TGG	-	chr7_3:21951008-21951027	Msa1096900:exon	35.0%
	TGCTGAATGAAAGAAGCTTA+CGG	+	chr7_3:21949047-21949066	None:intergenic	35.0%
	AAGAGTGGAAAATATACCCT+TGG	-	chr7_3:21949191-21949210	Msa1096900:three_prime_UTR	35.0%
	AGAGTGGAAAATATACCCTT+GGG	-	chr7_3:21949192-21949211	Msa1096900:three_prime_UTR	35.0%
!!	ATTACCTTTGGAACTCCTAA+GGG	+	chr7_3:21949237-21949256	None:intergenic	35.0%
!!	AATTACCTTTGGAACTCCTA+AGG	+	chr7_3:21949238-21949257	None:intergenic	35.0%
	TCAATTTCAGACTTCCTCAA+AGG	+	chr7_3:21949617-21949636	None:intergenic	35.0%
	TATGCATTCAGGGATTGTTT+AGG	-	chr7_3:21949740-21949759	Msa1096900:intron	35.0%
	TGTGACCGTAACATTATGTT+TGG	+	chr7_3:21949972-21949991	None:intergenic	35.0%
	ATTTGATCTTATGCTGCTGT+TGG	-	chr7_3:21950208-21950227	Msa1096900:intron	35.0%
	TTTGATCTTATGCTGCTGTT+GGG	-	chr7_3:21950209-21950228	Msa1096900:intron	35.0%
	TATCTATCAGTAGTTGGATG+TGG	-	chr7_3:21950280-21950299	Msa1096900:intron	35.0%
!	TGGATGTGGAACTAATTTTG+AGG	-	chr7_3:21950294-21950313	Msa1096900:intron	35.0%
!	GGATGTGGAACTAATTTTGA+GGG	-	chr7_3:21950295-21950314	Msa1096900:intron	35.0%
!	ACTGCATATGCTTAGTTTGA+TGG	-	chr7_3:21950366-21950385	Msa1096900:CDS	35.0%
!	ATGGCTTAGTTTGATGATTG+TGG	-	chr7_3:21950385-21950404	Msa1096900:CDS	35.0%
!!	ACAATAACAAGTGCTGATCA+AGG	+	chr7_3:21950430-21950449	None:intergenic	35.0%
!	TCTGTTATCAGTTGACTCTA+AGG	-	chr7_3:21950514-21950533	Msa1096900:intron	35.0%
	ATCATAGACAATGTTGACCT+TGG	-	chr7_3:21950593-21950612	Msa1096900:intron	35.0%
!!	AGGAATTGTCTTGATGATGT+CGG	+	chr7_3:21950764-21950783	None:intergenic	35.0%
!!!	GTGTACGATGCTTGTTATTT+TGG	-	chr7_3:21950878-21950897	Msa1096900:CDS	35.0%
	TGTGTTTGCTTGCAAAAAAG+TGG	-	chr7_3:21951008-21951027	Msa1096900:exon	35.0%
!!	GAGAACGGTTTTATACCCAA+GGG	+	chr7_3:21949210-21949229	None:intergenic	40.0%
!!	TGAGAACGGTTTTATACCCA+AGG	+	chr7_3:21949211-21949230	None:intergenic	40.0%
	AAACCGTTCTCAAATCCCTT+AGG	-	chr7_3:21949219-21949238	Msa1096900:three_prime_UTR	40.0%
	ACTCCTAAGGGATTTGAGAA+CGG	+	chr7_3:21949225-21949244	None:intergenic	40.0%
	AAATCCCTTAGGAGTTCCAA+AGG	-	chr7_3:21949230-21949249	Msa1096900:three_prime_UTR	40.0%
	GTTGTAGAGTGATGTTGTAG+TGG	-	chr7_3:21949446-21949465	Msa1096900:intron	40.0%
	ATTTCAGACTTCCTCAAAGG+AGG	+	chr7_3:21949614-21949633	None:intergenic	40.0%
!	GTACTATGCTATGTTGGCTA+AGG	-	chr7_3:21949637-21949656	Msa1096900:intron	40.0%
!	TATGCTATGTTGGCTAAGGT+TGG	-	chr7_3:21949641-21949660	Msa1096900:intron	40.0%
	GTTGGAGTTCACCATTACAA+TGG	-	chr7_3:21949659-21949678	Msa1096900:intron	40.0%
	TCAGCTAGCTAGAATCATTC+AGG	+	chr7_3:21949818-21949837	None:intergenic	40.0%
!	TGAGCTTTAGTGTGTATCAG+TGG	-	chr7_3:21949835-21949854	Msa1096900:intron	40.0%
	AATGACACTACTGTACGACA+GGG	+	chr7_3:21950148-21950167	None:intergenic	40.0%
	AAATGACACTACTGTACGAC+AGG	+	chr7_3:21950149-21950168	None:intergenic	40.0%
	GATTGTGGATATGCTATTGC+TGG	-	chr7_3:21950400-21950419	Msa1096900:CDS	40.0%
	GACATCATCAAGACAATTCC+TGG	-	chr7_3:21950763-21950782	Msa1096900:intron	40.0%
	TACTACGTTTACTGATCTCC+AGG	+	chr7_3:21950784-21950803	None:intergenic	40.0%
	TACTCAATGCTCAATCAGCT+GGG	+	chr7_3:21950908-21950927	None:intergenic	40.0%
	TTACTCAATGCTCAATCAGC+TGG	+	chr7_3:21950909-21950928	None:intergenic	40.0%
!!	GAGAACGGTTTTATACCCAA+GGG	+	chr7_3:21949210-21949229	None:intergenic	40.0%
!!	TGAGAACGGTTTTATACCCA+AGG	+	chr7_3:21949211-21949230	None:intergenic	40.0%
	AAACCGTTCTCAAATCCCTT+AGG	-	chr7_3:21949219-21949238	Msa1096900:three_prime_UTR	40.0%
	ACTCCTAAGGGATTTGAGAA+CGG	+	chr7_3:21949225-21949244	None:intergenic	40.0%
	AAATCCCTTAGGAGTTCCAA+AGG	-	chr7_3:21949230-21949249	Msa1096900:three_prime_UTR	40.0%
	GTTGTAGAGTGATGTTGTAG+TGG	-	chr7_3:21949446-21949465	Msa1096900:intron	40.0%
	ATTTCAGACTTCCTCAAAGG+AGG	+	chr7_3:21949614-21949633	None:intergenic	40.0%
!	GTACTATGCTATGTTGGCTA+AGG	-	chr7_3:21949637-21949656	Msa1096900:intron	40.0%
!	TATGCTATGTTGGCTAAGGT+TGG	-	chr7_3:21949641-21949660	Msa1096900:intron	40.0%
	GTTGGAGTTCACCATTACAA+TGG	-	chr7_3:21949659-21949678	Msa1096900:intron	40.0%
	TCAGCTAGCTAGAATCATTC+AGG	+	chr7_3:21949818-21949837	None:intergenic	40.0%
!	TGAGCTTTAGTGTGTATCAG+TGG	-	chr7_3:21949835-21949854	Msa1096900:intron	40.0%
	AATGACACTACTGTACGACA+GGG	+	chr7_3:21950148-21950167	None:intergenic	40.0%
	AAATGACACTACTGTACGAC+AGG	+	chr7_3:21950149-21950168	None:intergenic	40.0%
	GATTGTGGATATGCTATTGC+TGG	-	chr7_3:21950400-21950419	Msa1096900:CDS	40.0%
	GACATCATCAAGACAATTCC+TGG	-	chr7_3:21950763-21950782	Msa1096900:intron	40.0%
	TACTACGTTTACTGATCTCC+AGG	+	chr7_3:21950784-21950803	None:intergenic	40.0%
	TACTCAATGCTCAATCAGCT+GGG	+	chr7_3:21950908-21950927	None:intergenic	40.0%
	TTACTCAATGCTCAATCAGC+TGG	+	chr7_3:21950909-21950928	None:intergenic	40.0%
	GATGCGCAGAGAAGAAAATG+CGG	+	chr7_3:21948986-21949005	None:intergenic	45.0%
	TCACCCCAAACCTTCAACAA+TGG	-	chr7_3:21949006-21949025	Msa1096900:three_prime_UTR	45.0%
	CCACCATTGTTGAAGGTTTG+GGG	+	chr7_3:21949012-21949031	None:intergenic	45.0%
	GCCACCATTGTTGAAGGTTT+GGG	+	chr7_3:21949013-21949032	None:intergenic	45.0%
	GAAGCTTACGGTCTTCTTTG+CGG	+	chr7_3:21949035-21949054	None:intergenic	45.0%
!!	CTCATGAGAGCATCAACAAC+AGG	-	chr7_3:21949153-21949172	Msa1096900:three_prime_UTR	45.0%
	CTAACAACTGTCCTCCTTTG+AGG	-	chr7_3:21949600-21949619	Msa1096900:intron	45.0%
	TACCAGGATCAACAATGCTG+AGG	+	chr7_3:21950652-21950671	None:intergenic	45.0%
	GATGCGCAGAGAAGAAAATG+CGG	+	chr7_3:21948986-21949005	None:intergenic	45.0%
	TCACCCCAAACCTTCAACAA+TGG	-	chr7_3:21949006-21949025	Msa1096900:three_prime_UTR	45.0%
	CCACCATTGTTGAAGGTTTG+GGG	+	chr7_3:21949012-21949031	None:intergenic	45.0%
	GCCACCATTGTTGAAGGTTT+GGG	+	chr7_3:21949013-21949032	None:intergenic	45.0%
	GAAGCTTACGGTCTTCTTTG+CGG	+	chr7_3:21949035-21949054	None:intergenic	45.0%
!!	CTCATGAGAGCATCAACAAC+AGG	-	chr7_3:21949153-21949172	Msa1096900:three_prime_UTR	45.0%
	CTAACAACTGTCCTCCTTTG+AGG	-	chr7_3:21949600-21949619	Msa1096900:intron	45.0%
	TACCAGGATCAACAATGCTG+AGG	+	chr7_3:21950652-21950671	None:intergenic	45.0%
	CCCCAAACCTTCAACAATGG+TGG	-	chr7_3:21949009-21949028	Msa1096900:three_prime_UTR	50.0%
	GGCCACCATTGTTGAAGGTT+TGG	+	chr7_3:21949014-21949033	None:intergenic	50.0%
	TTTGCGGCCACCATTGTTGA+AGG	+	chr7_3:21949019-21949038	None:intergenic	50.0%
	CTCGCTCTTGTCATGAAGAG+TGG	-	chr7_3:21949176-21949195	Msa1096900:three_prime_UTR	50.0%
	TGCCTCAGCATTGTTGATCC+TGG	-	chr7_3:21950647-21950666	Msa1096900:intron	50.0%
	CCCCAAACCTTCAACAATGG+TGG	-	chr7_3:21949009-21949028	Msa1096900:three_prime_UTR	50.0%
	GGCCACCATTGTTGAAGGTT+TGG	+	chr7_3:21949014-21949033	None:intergenic	50.0%
	TTTGCGGCCACCATTGTTGA+AGG	+	chr7_3:21949019-21949038	None:intergenic	50.0%
	CTCGCTCTTGTCATGAAGAG+TGG	-	chr7_3:21949176-21949195	Msa1096900:three_prime_UTR	50.0%
	TGCCTCAGCATTGTTGATCC+TGG	-	chr7_3:21950647-21950666	Msa1096900:intron	50.0%
	GTTGACCTTGGCACTGCTTG+CGG	-	chr7_3:21950605-21950624	Msa1096900:intron	55.0%
	ACTTTCCGCAAGCAGTGCCA+AGG	+	chr7_3:21950613-21950632	None:intergenic	55.0%
	GTTGACCTTGGCACTGCTTG+CGG	-	chr7_3:21950605-21950624	Msa1096900:intron	55.0%
	ACTTTCCGCAAGCAGTGCCA+AGG	+	chr7_3:21950613-21950632	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	21948952	21951097	21948952	ID=Msa1096900;Name=Msa1096900
chr7_3	mRNA	21948952	21951097	21948952	ID=Msa1096900-mRNA-1;Parent=Msa1096900;Name=Msa1096900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=73\|1\|1\|1\|1\|1\|5\|302\|112
chr7_3	exon	21948952	21949294	21948952	ID=Msa1096900-mRNA-1:exon:4810;Parent=Msa1096900-mRNA-1
chr7_3	exon	21949381	21949449	21949381	ID=Msa1096900-mRNA-1:exon:4809;Parent=Msa1096900-mRNA-1
chr7_3	exon	21950366	21950467	21950366	ID=Msa1096900-mRNA-1:exon:4808;Parent=Msa1096900-mRNA-1
chr7_3	exon	21950798	21950903	21950798	ID=Msa1096900-mRNA-1:exon:4807;Parent=Msa1096900-mRNA-1
chr7_3	exon	21951004	21951097	21951004	ID=Msa1096900-mRNA-1:exon:4806;Parent=Msa1096900-mRNA-1
chr7_3	five_prime_UTR	21951025	21951097	21951025	ID=Msa1096900-mRNA-1:five_prime_utr;Parent=Msa1096900-mRNA-1
chr7_3	CDS	21951004	21951024	21951004	ID=Msa1096900-mRNA-1:cds;Parent=Msa1096900-mRNA-1
chr7_3	CDS	21950798	21950903	21950798	ID=Msa1096900-mRNA-1:cds;Parent=Msa1096900-mRNA-1
chr7_3	CDS	21950366	21950467	21950366	ID=Msa1096900-mRNA-1:cds;Parent=Msa1096900-mRNA-1
chr7_3	CDS	21949381	21949449	21949381	ID=Msa1096900-mRNA-1:cds;Parent=Msa1096900-mRNA-1
chr7_3	CDS	21949254	21949294	21949254	ID=Msa1096900-mRNA-1:cds;Parent=Msa1096900-mRNA-1
chr7_3	three_prime_UTR	21948952	21949253	21948952	ID=Msa1096900-mRNA-1:three_prime_utr;Parent=Msa1096900-mRNA-1

Gene Sequence	>Msa1096900 ATGGTGGCCGCAAAGAAGACCAAGAAGACTCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGAAAATATACCCTTGGGTATAAAACCGTTCTCAAATCCCTTAGGAGTTCCAAAGGGAAATTGATTATCATTGCTAACAACTGTCCTCCTTTGAGGAAGTCTGAAATTGAGTACTATGCTATGTTGGCTAAGGTTGGAGTTCACCATTACAATGGAAACAATGTTGACCTTGGCACTGCTTGCGGAAAGTACTACAGAGTGTGCTGCCTCAGCATTGTTGATCCTGGTGATTCCGACATCATCAAGACAATTCCTGGAGATCAGTAA
Protein sequence	>Msa1096900 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTIPGDQ*