AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1238810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238810 MtrunA17_Chr8g0350381 94.411 501 26 2 1 500 36 535 0.0 941
Msa1238810 MtrunA17_Chr4g0057301 41.364 220 119 4 288 500 364 580 2.93e-40 153
Msa1238810 MtrunA17_Chr4g0057301 33.910 289 135 16 1 256 1 266 8.57e-20 92.4
Msa1238810 MtrunA17_Chr4g0058781 33.750 160 90 3 354 498 212 370 5.01e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238810 AT4G00752.1 34.241 514 278 14 1 500 1 468 1.95e-67 224
Msa1238810 AT4G11740.1 42.105 228 106 2 288 500 348 564 3.16e-44 164
Msa1238810 AT4G11740.1 28.846 312 142 14 1 274 1 270 5.69e-16 81.3
Msa1238810 AT4G23040.1 45.249 221 100 4 288 500 318 525 1.35e-43 162
Msa1238810 AT4G23040.1 29.876 241 116 8 1 221 1 208 1.42e-11 67.0
Msa1238810 AT4G11740.2 28.846 312 142 14 1 274 1 270 6.73e-16 80.5

Find 119 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATTTCATTGACATTTA+TGG 0.037512 8_2:+19631487 Msa1238810:CDS
CAAGAATGAGGCTTTATTTC+TGG 0.096417 8_2:+19632357 Msa1238810:CDS
CTGATTGAAACTGCGCTTTA+TGG 0.169001 8_2:+19629629 Msa1238810:CDS
TATCATTTCACTGTCTTTAC+AGG 0.202618 8_2:+19628658 Msa1238810:CDS
ACTTGTCAATTATTATATTT+AGG 0.217192 8_2:+19632535 Msa1238810:three_prime_UTR
TTAGAACCCAAGAAATTATC+AGG 0.246631 8_2:+19632427 Msa1238810:three_prime_UTR
TCTCATGGTAGAGGATATTA+TGG 0.274729 8_2:+19628339 Msa1238810:CDS
CACCTGACCCAGCACGGTTT+TGG 0.306023 8_2:-19628062 None:intergenic
TTCTTCTTGCTTTGACGAAT+GGG 0.316400 8_2:-19629948 None:intergenic
TGAACGAGAAGATGATGATT+TGG 0.317721 8_2:+19628631 Msa1238810:CDS
ATGAAGGTTGCGACGGATTC+CGG 0.318205 8_2:-19626933 None:intergenic
ACTGGATGAACCCTGCCTTT+TGG 0.331875 8_2:-19629729 None:intergenic
TCAAGGACCAGGATACTAAA+TGG 0.332627 8_2:-19632404 None:intergenic
TGAGCGCCCTGATAATTTCT+TGG 0.355198 8_2:-19632434 None:intergenic
GGATACTAAATGGAAGAAAT+AGG 0.356371 8_2:-19632394 None:intergenic
TTTCTTCTTGCTTTGACGAA+TGG 0.361288 8_2:-19629949 None:intergenic
TCGCCTAAGGGTGGTTCATT+TGG 0.363564 8_2:-19630672 None:intergenic
TCTTCAAAACTGACAAGCTT+CGG 0.377260 8_2:+19630754 Msa1238810:CDS
ATTTCTTCCATTTAGTATCC+TGG 0.377378 8_2:+19632397 Msa1238810:three_prime_UTR
TGAAGGTTGCGACGGATTCC+GGG 0.385376 8_2:-19626932 None:intergenic
TTCTCTGATCTCCTTCTTCG+AGG 0.391845 8_2:-19628460 None:intergenic
CTTCAAAACTGACAAGCTTC+GGG 0.392662 8_2:+19630755 Msa1238810:CDS
TCCAATAAAATGTGCATTCA+CGG 0.399173 8_2:-19627817 None:intergenic
AATTTCTTGGGTTCTAATCA+AGG 0.403166 8_2:-19632421 None:intergenic
TCTCGTTCAAAATGACTTTG+TGG 0.407322 8_2:-19628617 None:intergenic
CATTGCGCACAAAATGTTGA+TGG 0.409363 8_2:-19626898 None:intergenic
TCTGAATGATGTCGTGGGTC+AGG 0.411598 8_2:-19629692 None:intergenic
TGAGAGGAAAGGTGAAGAGA+TGG 0.424791 8_2:-19626854 None:intergenic
TCAGTTGATAAGACAACAAC+AGG 0.428917 8_2:+19629778 Msa1238810:CDS
CAACCTGGATTGGGCTATGC+AGG 0.430431 8_2:+19628291 Msa1238810:CDS
GAGCGCCCTGATAATTTCTT+GGG 0.435449 8_2:-19632433 None:intergenic
TAATAACTGAGATGCTGAAC+TGG 0.436931 8_2:-19629747 None:intergenic
TACTATTGTTGTTCGAATGC+CGG 0.439751 8_2:+19630707 Msa1238810:CDS
AACCAAAACCGTGCTGGGTC+AGG 0.445457 8_2:+19628060 Msa1238810:CDS
AGAGATCTATGTAACGGGTT+TGG 0.445773 8_2:+19628162 Msa1238810:CDS
AATGCTTCATTGAGCTCGTC+AGG 0.450397 8_2:-19629605 None:intergenic
AGCCCAATCCAGGTTGATAC+TGG 0.451257 8_2:-19628284 None:intergenic
AACTTAGAGATCTATGTAAC+GGG 0.459209 8_2:+19628157 Msa1238810:CDS
TACCAGTATCAACCTGGATT+GGG 0.460679 8_2:+19628282 Msa1238810:CDS
CTACCAGTATCAACCTGGAT+TGG 0.465056 8_2:+19628281 Msa1238810:CDS
AATTTAGACTGCAGAGAAAG+AGG 0.466485 8_2:+19628759 Msa1238810:intron
GAAGCACTTGATTGAGCTAA+AGG 0.467737 8_2:-19628387 None:intergenic
TTGCAGGAACTGGAGAAAAC+AGG 0.468610 8_2:+19630627 Msa1238810:intron
CGCAATGACGACACTGTCCC+CGG 0.471911 8_2:+19626914 Msa1238810:exon
CTTCCAAATGAACCACCCTT+AGG 0.475058 8_2:+19630669 Msa1238810:CDS
CAAAACAACCAAAACCGTGC+TGG 0.483793 8_2:+19628054 Msa1238810:CDS
AGAAACACTCACAACTCTAT+AGG 0.485284 8_2:-19631527 None:intergenic
CTTCAGAGTAATCATAGTGT+GGG 0.488279 8_2:-19628023 None:intergenic
CAGAGAAAGAGGAAGCAATA+CGG 0.495874 8_2:+19628770 Msa1238810:CDS
AAGCCTCATTCTTGTTGCTA+AGG 0.504811 8_2:-19632348 None:intergenic
GTTCTCCACAAGGGGAGGCA+AGG 0.512550 8_2:+19628220 Msa1238810:CDS
AAATGCTGATCCCAAAAGGC+AGG 0.513755 8_2:+19629718 Msa1238810:CDS
TACTACTTGACTCAAACTAT+AGG 0.513851 8_2:+19628130 Msa1238810:CDS
AATTCCCTTGCCTCCCCTTG+TGG 0.513986 8_2:-19628225 None:intergenic
TGTCGTGGGTCAGGCAAAGA+TGG 0.514064 8_2:-19629683 None:intergenic
AAGCACTTGATTGAGCTAAA+GGG 0.522489 8_2:-19628386 None:intergenic
CGTTCACAACGACCACCGTC+CGG 0.525938 8_2:-19630726 None:intergenic
TTCTCCACAAGGGGAGGCAA+GGG 0.527047 8_2:+19628221 Msa1238810:CDS
AGAGAAAGAGGAAGCAATAC+GGG 0.529756 8_2:+19628771 Msa1238810:CDS
ATGAGATGATAAATTTCCAT+TGG 0.530591 8_2:-19628322 None:intergenic
GCACCTGCATAGCCCAATCC+AGG 0.530699 8_2:-19628294 None:intergenic
TGCTCATGCTTTATTAGCCG+AGG 0.531346 8_2:+19628828 Msa1238810:CDS
TGCAATAGAAGCCTCGAAGA+AGG 0.533510 8_2:+19628449 Msa1238810:CDS
TTGGGTTCTAATCAAGGACC+AGG 0.534046 8_2:-19632415 None:intergenic
ACGGGAGCTTCGAGCAAAAG+AGG 0.535685 8_2:+19628789 Msa1238810:CDS
TTGTCTTATCAACTGAGTCT+CGG 0.537380 8_2:-19629771 None:intergenic
ATTTATGGAGCAGTGAAGGC+TGG 0.539511 8_2:+19631502 Msa1238810:CDS
GAATTTCCTACAGGGATCAA+TGG 0.541343 8_2:+19628243 Msa1238810:CDS
CTCATGGTAGAGGATATTAT+GGG 0.544269 8_2:+19628340 Msa1238810:CDS
AAAACAACCAAAACCGTGCT+GGG 0.546680 8_2:+19628055 Msa1238810:CDS
GAGGCAAGGGAATTTCCTAC+AGG 0.546922 8_2:+19628234 Msa1238810:CDS
GCAACCTTCATGCGTATCAC+AGG 0.548735 8_2:+19626945 Msa1238810:CDS
AAAGCTTATGTTGGTGTGAG+AGG 0.550956 8_2:-19626870 None:intergenic
TGACATTTATGGAGCAGTGA+AGG 0.557111 8_2:+19631498 Msa1238810:CDS
AATTTATCATCTCATGGTAG+AGG 0.558707 8_2:+19628330 Msa1238810:CDS
CAAAACCGTGCTGGGTCAGG+TGG 0.560404 8_2:+19628063 Msa1238810:CDS
GTTAGTAGTTCTCTCTCCCT+CGG 0.562193 8_2:-19628845 None:intergenic
TAACATTGTATGCTCGTCGC+GGG 0.563151 8_2:-19632294 None:intergenic
AATGGAAATTTATCATCTCA+TGG 0.563505 8_2:+19628324 Msa1238810:CDS
CAATCCAGGTTGATACTGGT+AGG 0.564563 8_2:-19628280 None:intergenic
TTTGAGTCAAGTAGTAGTGA+AGG 0.568566 8_2:-19628123 None:intergenic
GAACTTAGAGATCTATGTAA+CGG 0.570755 8_2:+19628156 Msa1238810:CDS
GCTTCAGAGTAATCATAGTG+TGG 0.576562 8_2:-19628024 None:intergenic
CCACCACGTGGTTCTCCACA+AGG 0.577108 8_2:+19628210 Msa1238810:CDS
AAAGAGGAAAGTAAAGTACT+TGG 0.583823 8_2:+19628805 Msa1238810:CDS
TCTGCTACTTTGAATGAAGT+AGG 0.591713 8_2:+19632325 Msa1238810:CDS
ATTGTTGTTCGAATGCCGGA+CGG 0.596739 8_2:+19630711 Msa1238810:CDS
CATGCGTATCACAGGAGCAA+CGG 0.599380 8_2:+19626953 Msa1238810:CDS
AGGCCTTAGCAACAAGAATG+AGG 0.602952 8_2:+19632345 Msa1238810:CDS
ACCACGTGGTTCTCCACAAG+GGG 0.608202 8_2:+19628212 Msa1238810:CDS
GAAGGTTGCGACGGATTCCG+GGG 0.608307 8_2:-19626931 None:intergenic
GCTCATGCTTTATTAGCCGA+GGG 0.610195 8_2:+19628829 Msa1238810:CDS
TCACCCTACCAGTATCAACC+TGG 0.613396 8_2:+19628276 Msa1238810:CDS
ACGTGGTTCTCCACAAGGGG+AGG 0.620464 8_2:+19628215 Msa1238810:CDS
CTTCTAGCAGCATTGAACAA+AGG 0.626567 8_2:-19628093 None:intergenic
AATCCAGGTTGATACTGGTA+GGG 0.627507 8_2:-19628279 None:intergenic
TGATTCCACCTGACCCAGCA+CGG 0.628886 8_2:-19628068 None:intergenic
TGCTCCTGTGATACGCATGA+AGG 0.630829 8_2:-19626949 None:intergenic
ATGGAAACGAAAGCTTATGT+TGG 0.632471 8_2:-19626879 None:intergenic
GTTGTTCGAATGCCGGACGG+TGG 0.634608 8_2:+19630714 Msa1238810:CDS
CACCACGTGGTTCTCCACAA+GGG 0.639472 8_2:+19628211 Msa1238810:CDS
AACTACCTCTAGTTTCTGAA+CGG 0.640846 8_2:-19626985 None:intergenic
CACTAACAGAAGCAAACTAG+AGG 0.646420 8_2:+19628867 Msa1238810:CDS
AATGCTGATCCCAAAAGGCA+GGG 0.648598 8_2:+19629719 Msa1238810:CDS
ACGTGTTCATGAAGATGCAG+AGG 0.649063 8_2:+19628410 Msa1238810:CDS
TAGAACCCAAGAAATTATCA+GGG 0.650582 8_2:+19632428 Msa1238810:three_prime_UTR
ATATTTATTGAATACAAGTG+AGG 0.657272 8_2:+19632477 Msa1238810:three_prime_UTR
TACATACAATAAGTTAACAA+CGG 0.672315 8_2:-19632501 None:intergenic
TATGCAGGTGCTGATACCAA+TGG 0.672316 8_2:+19628306 Msa1238810:CDS
TTATGTTGGTGTGAGAGGAA+AGG 0.674086 8_2:-19626865 None:intergenic
TTAACATTGTATGCTCGTCG+CGG 0.674332 8_2:-19632295 None:intergenic
TTCAGAGTAATCATAGTGTG+GGG 0.674899 8_2:-19628022 None:intergenic
TGTGCACCATTGATCCCTGT+AGG 0.679644 8_2:-19628249 None:intergenic
GATACGCATGAAGGTTGCGA+CGG 0.680382 8_2:-19626940 None:intergenic
CGTCGCCGTTCAGAAACTAG+AGG 0.683941 8_2:+19626980 Msa1238810:CDS
AGGCAAGGGAATTTCCTACA+GGG 0.721531 8_2:+19628235 Msa1238810:CDS
TCAAGTAGTACACCACCACG+TGG 0.740632 8_2:+19628198 Msa1238810:CDS
CCTTGTGGAGAACCACGTGG+TGG 0.741616 8_2:-19628210 None:intergenic
TCCCCTTGTGGAGAACCACG+TGG 0.753351 8_2:-19628213 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTGATTTTTCTTAA+CGG + chr8_2:19627230-19627249 Msa1238810:intron 10.0%
!!! AAATGTTTATTTGAAAATTT+TGG + chr8_2:19627446-19627465 Msa1238810:intron 10.0%
!!! TAGTAATACAAAATATTTTT+AGG - chr8_2:19629082-19629101 None:intergenic 10.0%
!! AATTTAAACAAATTTGTAAA+AGG - chr8_2:19630237-19630256 None:intergenic 10.0%
!!! ATTATTTTATTAAATTTCAC+TGG - chr8_2:19631781-19631800 None:intergenic 10.0%
!!! TTATTTTGATAGTATAAATT+AGG - chr8_2:19631891-19631910 None:intergenic 10.0%
!! AAAAAAAGATAAAGAAAAAT+TGG - chr8_2:19632075-19632094 None:intergenic 10.0%
!!! TTAATTGATAATACAATGTT+GGG - chr8_2:19627362-19627381 None:intergenic 15.0%
!!! TTTAATTGATAATACAATGT+TGG - chr8_2:19627363-19627382 None:intergenic 15.0%
!! GAAATAAAAGTAACAAAATA+TGG - chr8_2:19628534-19628553 None:intergenic 15.0%
!!! TTATCACATCATAATTTTTT+TGG + chr8_2:19629039-19629058 Msa1238810:intron 15.0%
!!! TATCACATCATAATTTTTTT+GGG + chr8_2:19629040-19629059 Msa1238810:intron 15.0%
!! TCACAAAAATAAAAAATATG+TGG - chr8_2:19631100-19631119 None:intergenic 15.0%
!! AAATAAATGTATGAAACTTA+TGG + chr8_2:19631807-19631826 Msa1238810:intron 15.0%
!!! GCAAAAATAAATAAGCTTTT+AGG - chr8_2:19627140-19627159 None:intergenic 20.0%
!!! GTATAAAATTTTTACACATC+AGG + chr8_2:19627258-19627277 Msa1238810:intron 20.0%
!! TCAATAATGTATTGTTACAT+CGG - chr8_2:19627315-19627334 None:intergenic 20.0%
!! CAATTAAACTTTATTAGTAG+AGG + chr8_2:19627375-19627394 Msa1238810:intron 20.0%
!! TAAAGAGACTAAACAAAATT+TGG - chr8_2:19627614-19627633 None:intergenic 20.0%
!! TGAATGCTGAAATAATATAT+TGG - chr8_2:19628582-19628601 None:intergenic 20.0%
!! ATTGAGTCATACAAATTAAA+AGG - chr8_2:19628695-19628714 None:intergenic 20.0%
!! ATGATGTGATAAAAAAATCA+AGG - chr8_2:19629031-19629050 None:intergenic 20.0%
!! TCAAATGTATTAACTTAAGT+CGG + chr8_2:19629295-19629314 Msa1238810:intron 20.0%
!! ATAAAAAAGTCAAAAGAATC+AGG - chr8_2:19630542-19630561 None:intergenic 20.0%
!!! AAGGTTTTAAATTACAATTG+CGG - chr8_2:19631165-19631184 None:intergenic 20.0%
!!! TTTGATTTCATTGACATTTA+TGG + chr8_2:19631487-19631506 Msa1238810:CDS 20.0%
!! AATCCATAAATCAATTTGAT+AGG - chr8_2:19631556-19631575 None:intergenic 20.0%
!! ATGTCATAGTAAAATAACAA+AGG - chr8_2:19631582-19631601 None:intergenic 20.0%
!!! TTTGTTATTTTACTATGACA+TGG + chr8_2:19631581-19631600 Msa1238810:intron 20.0%
!! AAAGATAAAGAAAAATTGGA+GGG - chr8_2:19632071-19632090 None:intergenic 20.0%
!! AAAAGATAAAGAAAAATTGG+AGG - chr8_2:19632072-19632091 None:intergenic 20.0%
!!! TAGGATATGTTATTCTTTTA+AGG - chr8_2:19632111-19632130 None:intergenic 20.0%
!! ATATAATCAATGATCAAGAT+AGG - chr8_2:19632212-19632231 None:intergenic 20.0%
!! ATATTTATTGAATACAAGTG+AGG + chr8_2:19632477-19632496 Msa1238810:three_prime_UTR 20.0%
!! TACATACAATAAGTTAACAA+CGG - chr8_2:19632504-19632523 None:intergenic 20.0%
! GGCAATATACATAGTTTAAA+TGG - chr8_2:19627194-19627213 None:intergenic 25.0%
! ATTAAACACATCTACACAAA+TGG - chr8_2:19627215-19627234 None:intergenic 25.0%
! AATTAAAACAAGTCCTACAT+AGG + chr8_2:19627470-19627489 Msa1238810:intron 25.0%
! ATTAAAACAAGTCCTACATA+GGG + chr8_2:19627471-19627490 Msa1238810:intron 25.0%
!! GACAATTTTTCATTTGAAAG+TGG + chr8_2:19627538-19627557 Msa1238810:intron 25.0%
!!! TTTTTAAAACTTTTGTCTGC+AGG + chr8_2:19627770-19627789 Msa1238810:intron 25.0%
! AAAAAATGAGAGGATATGAA+AGG - chr8_2:19627893-19627912 None:intergenic 25.0%
! TTATTGCCATTATTAGAAGT+TGG + chr8_2:19627915-19627934 Msa1238810:intron 25.0%
! AAGATTCCAACTTCTAATAA+TGG - chr8_2:19627924-19627943 None:intergenic 25.0%
! ATGAGATGATAAATTTCCAT+TGG - chr8_2:19628325-19628344 None:intergenic 25.0%
! AATGGAAATTTATCATCTCA+TGG + chr8_2:19628324-19628343 Msa1238810:CDS 25.0%
! ATGCTGAAATAATATATTGG+AGG - chr8_2:19628579-19628598 None:intergenic 25.0%
!!! TATTTTAATCAACACTGGTA+AGG - chr8_2:19629169-19629188 None:intergenic 25.0%
!!! CTATGTATTTTAATCAACAC+TGG - chr8_2:19629174-19629193 None:intergenic 25.0%
! ACTTGATAAAACAGTTTCAT+GGG + chr8_2:19629359-19629378 Msa1238810:intron 25.0%
!! ATCTAAAGCTACATTTCAAT+TGG - chr8_2:19629467-19629486 None:intergenic 25.0%
! GTTAAAATTAGCTACTCTTA+TGG + chr8_2:19630174-19630193 Msa1238810:intron 25.0%
! CAAATTTGTAAAAGGTTTCA+CGG - chr8_2:19630229-19630248 None:intergenic 25.0%
!!! CTTTTTTATATTCCTTTGAC+AGG + chr8_2:19630553-19630572 Msa1238810:intron 25.0%
! TTGATCATACACTTATCAAA+TGG - chr8_2:19630960-19630979 None:intergenic 25.0%
!! TGTGATTTTATGCAATATCA+AGG + chr8_2:19631115-19631134 Msa1238810:intron 25.0%
!! ATGTGTATTTTACATTACTG+CGG + chr8_2:19631407-19631426 Msa1238810:intron 25.0%
!! CATCCTATCAAATTGATTTA+TGG + chr8_2:19631550-19631569 Msa1238810:intron 25.0%
!!! TGGTCGTTTTTCATAAATAA+TGG + chr8_2:19631659-19631678 Msa1238810:intron 25.0%
! AAGTTACATGTCATGAATTA+TGG + chr8_2:19631860-19631879 Msa1238810:intron 25.0%
! AACATATCCTAAAATGAAGT+TGG + chr8_2:19632120-19632139 Msa1238810:intron 25.0%
! ATGATATATCTATGCTATCA+TGG + chr8_2:19632181-19632200 Msa1238810:intron 25.0%
AAACTTTATTAGTAGAGGTG+AGG + chr8_2:19627380-19627399 Msa1238810:intron 30.0%
AACTTTATTAGTAGAGGTGA+GGG + chr8_2:19627381-19627400 Msa1238810:intron 30.0%
TCCAATAAAATGTGCATTCA+CGG - chr8_2:19627820-19627839 None:intergenic 30.0%
GGCAATAACAAAAAAATGAG+AGG - chr8_2:19627903-19627922 None:intergenic 30.0%
TTCTTGTGAATTATCTAGTC+AGG + chr8_2:19627975-19627994 Msa1238810:intron 30.0%
TACTACTTGACTCAAACTAT+AGG + chr8_2:19628130-19628149 Msa1238810:CDS 30.0%
GAACTTAGAGATCTATGTAA+CGG + chr8_2:19628156-19628175 Msa1238810:CDS 30.0%
AACTTAGAGATCTATGTAAC+GGG + chr8_2:19628157-19628176 Msa1238810:CDS 30.0%
AATTTATCATCTCATGGTAG+AGG + chr8_2:19628330-19628349 Msa1238810:CDS 30.0%
! TGGAGGAAAAAACTTTAGAA+AGG - chr8_2:19628562-19628581 None:intergenic 30.0%
TATCATTTCACTGTCTTTAC+AGG + chr8_2:19628658-19628677 Msa1238810:CDS 30.0%
AACTAAGAATCAGAAACACT+GGG - chr8_2:19628727-19628746 None:intergenic 30.0%
AAACTAAGAATCAGAAACAC+TGG - chr8_2:19628728-19628747 None:intergenic 30.0%
! AAAGAGGAAAGTAAAGTACT+TGG + chr8_2:19628805-19628824 Msa1238810:CDS 30.0%
AAATCAAGGTTTGTGAACTA+CGG - chr8_2:19629017-19629036 None:intergenic 30.0%
TTGTATTACTAAAAAGCCCT+TGG + chr8_2:19629091-19629110 Msa1238810:intron 30.0%
TGTATTACTAAAAAGCCCTT+GGG + chr8_2:19629092-19629111 Msa1238810:intron 30.0%
AGATTCTATTAAGCCATTTC+AGG + chr8_2:19629195-19629214 Msa1238810:intron 30.0%
!! TATTAAGCCATTTCAGGTTA+TGG + chr8_2:19629201-19629220 Msa1238810:intron 30.0%
!! ATTAAGCCATTTCAGGTTAT+GGG + chr8_2:19629202-19629221 Msa1238810:intron 30.0%
CACTTGATAAAACAGTTTCA+TGG + chr8_2:19629358-19629377 Msa1238810:intron 30.0%
AAAATAAGGCAAGAAGTCAT+TGG - chr8_2:19629561-19629580 None:intergenic 30.0%
!!! TTTTTTCTGAATGATGTCGT+GGG - chr8_2:19629700-19629719 None:intergenic 30.0%
!!! TTTTTTTCTGAATGATGTCG+TGG - chr8_2:19629701-19629720 None:intergenic 30.0%
AAAAAAATGCTGATCCCAAA+AGG + chr8_2:19629714-19629733 Msa1238810:CDS 30.0%
GTATGATCTATATCCATGAA+AGG + chr8_2:19629825-19629844 Msa1238810:intron 30.0%
GAAGATTAGAAATTACTCAG+AGG - chr8_2:19630133-19630152 None:intergenic 30.0%
! TTTTAACCATTCATCTTGCA+TGG - chr8_2:19630161-19630180 None:intergenic 30.0%
! TTATTTTCATGAAGTTCGTC+TGG + chr8_2:19630259-19630278 Msa1238810:intron 30.0%
! TATTTTCATGAAGTTCGTCT+GGG + chr8_2:19630260-19630279 Msa1238810:intron 30.0%
TAACATGATTACCAAGTGAA+TGG - chr8_2:19630476-19630495 None:intergenic 30.0%
AAACAAAATTCTCCTGTCAA+AGG - chr8_2:19630568-19630587 None:intergenic 30.0%
TGATAAGTGTATGATCAAGT+TGG + chr8_2:19630962-19630981 Msa1238810:intron 30.0%
AATTAATTGCTAACGAAGCA+AGG - chr8_2:19631184-19631203 None:intergenic 30.0%
AACCAACTAAGAAATCAACT+AGG + chr8_2:19631240-19631259 Msa1238810:intron 30.0%
TACATATGCAGTTATGAAGT+AGG + chr8_2:19631379-19631398 Msa1238810:intron 30.0%
GAAATCAAAAAGAAGCTACA+AGG - chr8_2:19631476-19631495 None:intergenic 30.0%
! GCTTTTATTACCATCTTTTG+AGG + chr8_2:19631692-19631711 Msa1238810:intron 30.0%
! TCCTAAAATGAAGTTGGTTA+TGG + chr8_2:19632126-19632145 Msa1238810:intron 30.0%
ATCATAAACTTTAACCGAAG+AGG - chr8_2:19632166-19632185 None:intergenic 30.0%
ATTGATTAACTATCACTGCT+TGG + chr8_2:19632248-19632267 Msa1238810:intron 30.0%
GGATACTAAATGGAAGAAAT+AGG - chr8_2:19632397-19632416 None:intergenic 30.0%
ATTTCTTCCATTTAGTATCC+TGG + chr8_2:19632397-19632416 Msa1238810:three_prime_UTR 30.0%
! AATTTCTTGGGTTCTAATCA+AGG - chr8_2:19632424-19632443 None:intergenic 30.0%
TTAGAACCCAAGAAATTATC+AGG + chr8_2:19632427-19632446 Msa1238810:three_prime_UTR 30.0%
TAGAACCCAAGAAATTATCA+GGG + chr8_2:19632428-19632447 Msa1238810:three_prime_UTR 30.0%
ATGGAAACGAAAGCTTATGT+TGG - chr8_2:19626882-19626901 None:intergenic 35.0%
! AACTACCTCTAGTTTCTGAA+CGG - chr8_2:19626988-19627007 None:intergenic 35.0%
AATTCGTAAGATCGTGAACT+TGG - chr8_2:19627114-19627133 None:intergenic 35.0%
ACTTTATTAGTAGAGGTGAG+GGG + chr8_2:19627382-19627401 Msa1238810:intron 35.0%
TCCTACATAGGGATTAAGAA+AGG + chr8_2:19627482-19627501 Msa1238810:intron 35.0%
ACCTTTCTTAATCCCTATGT+AGG - chr8_2:19627486-19627505 None:intergenic 35.0%
! AACTTTTGTCTGCAGGAATA+TGG + chr8_2:19627777-19627796 Msa1238810:intron 35.0%
! ACTTTTGTCTGCAGGAATAT+GGG + chr8_2:19627778-19627797 Msa1238810:intron 35.0%
GGAATCTTACTAGACATAAG+AGG + chr8_2:19627936-19627955 Msa1238810:intron 35.0%
TTCAGAGTAATCATAGTGTG+GGG - chr8_2:19628025-19628044 None:intergenic 35.0%
CTTCAGAGTAATCATAGTGT+GGG - chr8_2:19628026-19628045 None:intergenic 35.0%
TTTGAGTCAAGTAGTAGTGA+AGG - chr8_2:19628126-19628145 None:intergenic 35.0%
TCTCATGGTAGAGGATATTA+TGG + chr8_2:19628339-19628358 Msa1238810:CDS 35.0%
CTCATGGTAGAGGATATTAT+GGG + chr8_2:19628340-19628359 Msa1238810:CDS 35.0%
AAGCACTTGATTGAGCTAAA+GGG - chr8_2:19628389-19628408 None:intergenic 35.0%
TCTCGTTCAAAATGACTTTG+TGG - chr8_2:19628620-19628639 None:intergenic 35.0%
TGAACGAGAAGATGATGATT+TGG + chr8_2:19628631-19628650 Msa1238810:CDS 35.0%
AATTTAGACTGCAGAGAAAG+AGG + chr8_2:19628759-19628778 Msa1238810:intron 35.0%
! ATGAATTGGGTGGTTCTATA+TGG + chr8_2:19628960-19628979 Msa1238810:intron 35.0%
GTATTACTAAAAAGCCCTTG+GGG + chr8_2:19629093-19629112 Msa1238810:intron 35.0%
AATCAACACTGGTAAGGAAT+GGG - chr8_2:19629163-19629182 None:intergenic 35.0%
TAATCAACACTGGTAAGGAA+TGG - chr8_2:19629164-19629183 None:intergenic 35.0%
AAATGTGTTGCGTGATAAGA+AGG - chr8_2:19629329-19629348 None:intergenic 35.0%
TATCTTATCCAAGTGAAGTC+AGG + chr8_2:19629433-19629452 Msa1238810:intron 35.0%
GCTACATTTCAATTGGATGA+TGG - chr8_2:19629460-19629479 None:intergenic 35.0%
!!! TGCCTTATTTTGCAATACAG+TGG + chr8_2:19629570-19629589 Msa1238810:intron 35.0%
!!! GCCTTATTTTGCAATACAGT+GGG + chr8_2:19629571-19629590 Msa1238810:intron 35.0%
!!! CCTTATTTTGCAATACAGTG+GGG + chr8_2:19629572-19629591 Msa1238810:intron 35.0%
TAATAACTGAGATGCTGAAC+TGG - chr8_2:19629750-19629769 None:intergenic 35.0%
TTGTCTTATCAACTGAGTCT+CGG - chr8_2:19629774-19629793 None:intergenic 35.0%
!! TCAGTTGATAAGACAACAAC+AGG + chr8_2:19629778-19629797 Msa1238810:CDS 35.0%
ATAGATCATACAGCCATTAC+AGG - chr8_2:19629816-19629835 None:intergenic 35.0%
CAGGTTATGTTATCCTTTCA+TGG - chr8_2:19629841-19629860 None:intergenic 35.0%
TTCTTCTTGCTTTGACGAAT+GGG - chr8_2:19629951-19629970 None:intergenic 35.0%
TTTCTTCTTGCTTTGACGAA+TGG - chr8_2:19629952-19629971 None:intergenic 35.0%
CAAAAATACGCGTGAAAGAA+CGG + chr8_2:19629976-19629995 Msa1238810:CDS 35.0%
GTGAAAGAACGGTAATACAT+TGG + chr8_2:19629987-19630006 Msa1238810:intron 35.0%
!!! TTTTTTTTTCCGCTGACCAT+TGG + chr8_2:19630065-19630084 Msa1238810:intron 35.0%
CTAAGATACTTGACCATACA+AGG - chr8_2:19630096-19630115 None:intergenic 35.0%
! AAGTTGACGTGTCTTTTGTA+TGG + chr8_2:19630514-19630533 Msa1238810:intron 35.0%
!! CAGGAGAATTTTGTTTCCAT+TGG + chr8_2:19630572-19630591 Msa1238810:intron 35.0%
!! CAGTACTGTTCTAAAACCAA+TGG - chr8_2:19630591-19630610 None:intergenic 35.0%
AACAGTGTTTACCTATTTGC+AGG + chr8_2:19630611-19630630 Msa1238810:intron 35.0%
!!! ATTGCTTTTTCATCGCCTAA+GGG - chr8_2:19630687-19630706 None:intergenic 35.0%
!!! AATTGCTTTTTCATCGCCTA+AGG - chr8_2:19630688-19630707 None:intergenic 35.0%
! TACTATTGTTGTTCGAATGC+CGG + chr8_2:19630707-19630726 Msa1238810:CDS 35.0%
TCTTCAAAACTGACAAGCTT+CGG + chr8_2:19630754-19630773 Msa1238810:CDS 35.0%
! TGTTTGCTAGGAAGAATACA+AGG - chr8_2:19630815-19630834 None:intergenic 35.0%
AGTACAAAAGGATGTTTGCT+AGG - chr8_2:19630827-19630846 None:intergenic 35.0%
! GACAAGGTTGAACTTTAAAG+GGG - chr8_2:19630858-19630877 None:intergenic 35.0%
GGACAAGGTTGAACTTTAAA+GGG - chr8_2:19630859-19630878 None:intergenic 35.0%
!!! ATTCTAGTTTTCAGACCGTA+GGG - chr8_2:19630880-19630899 None:intergenic 35.0%
!!! AATTCTAGTTTTCAGACCGT+AGG - chr8_2:19630881-19630900 None:intergenic 35.0%
ACTTAAAACCATGCTACCAA+GGG - chr8_2:19630989-19631008 None:intergenic 35.0%
AACTTAAAACCATGCTACCA+AGG - chr8_2:19630990-19631009 None:intergenic 35.0%
TAATTGCGACAGCAACATAA+TGG + chr8_2:19631024-19631043 Msa1238810:intron 35.0%
! CAGCAACATAATGGTTTTTG+TGG + chr8_2:19631033-19631052 Msa1238810:intron 35.0%
! GTCCTAGTTGATTTCTTAGT+TGG - chr8_2:19631245-19631264 None:intergenic 35.0%
TACTGATGCTTTCTTTAGCT+GGG + chr8_2:19631286-19631305 Msa1238810:intron 35.0%
TTTACATTACTGCGGTAGTT+TGG + chr8_2:19631415-19631434 Msa1238810:intron 35.0%
AGAAACACTCACAACTCTAT+AGG - chr8_2:19631530-19631549 None:intergenic 35.0%
TTGTTGCTAAAGATGTTCAG+TGG + chr8_2:19631616-19631635 Msa1238810:intron 35.0%
! GCCATAACCAACTTCATTTT+AGG - chr8_2:19632130-19632149 None:intergenic 35.0%
! CACTCAATTTTGTTCCTCTT+CGG + chr8_2:19632149-19632168 Msa1238810:intron 35.0%
!! TCTGCTACTTTGAATGAAGT+AGG + chr8_2:19632325-19632344 Msa1238810:CDS 35.0%
!! CAAGAATGAGGCTTTATTTC+TGG + chr8_2:19632357-19632376 Msa1238810:CDS 35.0%
TTATGTTGGTGTGAGAGGAA+AGG - chr8_2:19626868-19626887 None:intergenic 40.0%
AAAGCTTATGTTGGTGTGAG+AGG - chr8_2:19626873-19626892 None:intergenic 40.0%
CATTGCGCACAAAATGTTGA+TGG - chr8_2:19626901-19626920 None:intergenic 40.0%
AATCTTCATAGCAAGTGTGC+CGG - chr8_2:19627681-19627700 None:intergenic 40.0%
! CTTTTGTCTGCAGGAATATG+GGG + chr8_2:19627779-19627798 Msa1238810:intron 40.0%
! TTTTGTCTGCAGGAATATGG+GGG + chr8_2:19627780-19627799 Msa1238810:intron 40.0%
! GCCGTGAATGCACATTTTAT+TGG + chr8_2:19627816-19627835 Msa1238810:CDS 40.0%
GCTTCAGAGTAATCATAGTG+TGG - chr8_2:19628027-19628046 None:intergenic 40.0%
AAAACAACCAAAACCGTGCT+GGG + chr8_2:19628055-19628074 Msa1238810:CDS 40.0%
! CTTCTAGCAGCATTGAACAA+AGG - chr8_2:19628096-19628115 None:intergenic 40.0%
!! AGAGATCTATGTAACGGGTT+TGG + chr8_2:19628162-19628181 Msa1238810:CDS 40.0%
GAATTTCCTACAGGGATCAA+TGG + chr8_2:19628243-19628262 Msa1238810:CDS 40.0%
!! AATCCAGGTTGATACTGGTA+GGG - chr8_2:19628282-19628301 None:intergenic 40.0%
TACCAGTATCAACCTGGATT+GGG + chr8_2:19628282-19628301 Msa1238810:CDS 40.0%
! GAAGCACTTGATTGAGCTAA+AGG - chr8_2:19628390-19628409 None:intergenic 40.0%
AAGAATCAGAAACACTGGGA+AGG - chr8_2:19628723-19628742 None:intergenic 40.0%
CAGAGAAAGAGGAAGCAATA+CGG + chr8_2:19628770-19628789 Msa1238810:CDS 40.0%
AGAGAAAGAGGAAGCAATAC+GGG + chr8_2:19628771-19628790 Msa1238810:CDS 40.0%
CACTAACAGAAGCAAACTAG+AGG + chr8_2:19628867-19628886 Msa1238810:CDS 40.0%
TAACAGAAGCAAACTAGAGG+TGG + chr8_2:19628870-19628889 Msa1238810:intron 40.0%
AACAGAAGCAAACTAGAGGT+GGG + chr8_2:19628871-19628890 Msa1238810:intron 40.0%
! TTTTACACACGCATGACTCT+TGG + chr8_2:19628916-19628935 Msa1238810:intron 40.0%
TTTACACACGCATGACTCTT+GGG + chr8_2:19628917-19628936 Msa1238810:intron 40.0%
! AGCAGAGGCATACAATGAAT+TGG + chr8_2:19628946-19628965 Msa1238810:intron 40.0%
! GCAGAGGCATACAATGAATT+GGG + chr8_2:19628947-19628966 Msa1238810:intron 40.0%
! AATTGGGTGGTTCTATATGG+AGG + chr8_2:19628963-19628982 Msa1238810:intron 40.0%
TACGGAAAATGGAATGACCA+TGG - chr8_2:19628999-19629018 None:intergenic 40.0%
GGTTTGTGAACTACGGAAAA+TGG - chr8_2:19629010-19629029 None:intergenic 40.0%
AGAACCACATATAACCCCAA+GGG - chr8_2:19629110-19629129 None:intergenic 40.0%
CCCCACTGTATTGCAAAATA+AGG - chr8_2:19629575-19629594 None:intergenic 40.0%
! TATTTTGCAATACAGTGGGG+TGG + chr8_2:19629575-19629594 Msa1238810:intron 40.0%
CTGATTGAAACTGCGCTTTA+TGG + chr8_2:19629629-19629648 Msa1238810:CDS 40.0%
GTTTAGACTCTTGCCTGTAA+TGG + chr8_2:19629800-19629819 Msa1238810:intron 40.0%
ACCTGTCAACATCTTTATGC+AGG + chr8_2:19629856-19629875 Msa1238810:intron 40.0%
TCCTGCATAAAGATGTTGAC+AGG - chr8_2:19629860-19629879 None:intergenic 40.0%
TTCATAGCTCAGCTAACAGT+CGG - chr8_2:19630035-19630054 None:intergenic 40.0%
ACCATTGGATCATCCTTGTA+TGG + chr8_2:19630080-19630099 Msa1238810:intron 40.0%
ACCATACAAGGATGATCCAA+TGG - chr8_2:19630084-19630103 None:intergenic 40.0%
CAGTATCCATGCAAGATGAA+TGG + chr8_2:19630152-19630171 Msa1238810:intron 40.0%
CTCTTATGGATGAGAAACAG+AGG + chr8_2:19630188-19630207 Msa1238810:intron 40.0%
CACAAAGAAGTCAAACATGC+AGG - chr8_2:19630292-19630311 None:intergenic 40.0%
! CTGCATGTTTGACTTCTTTG+TGG + chr8_2:19630290-19630309 Msa1238810:intron 40.0%
TGACACATGCAAAAGACGAA+TGG - chr8_2:19630394-19630413 None:intergenic 40.0%
TGGTGCATGTTCAAAAGACA+AGG - chr8_2:19630456-19630475 None:intergenic 40.0%
TTGAACATGCACCATTCACT+TGG + chr8_2:19630462-19630481 Msa1238810:intron 40.0%
GTTTACCTATTTGCAGGAAC+TGG + chr8_2:19630617-19630636 Msa1238810:intron 40.0%
TTTCTCCAGTTCCTGCAAAT+AGG - chr8_2:19630625-19630644 None:intergenic 40.0%
CTTCAAAACTGACAAGCTTC+GGG + chr8_2:19630755-19630774 Msa1238810:CDS 40.0%
! TGAACTTTAAAGGGGTTGGT+AGG - chr8_2:19630850-19630869 None:intergenic 40.0%
! AGGTTGAACTTTAAAGGGGT+TGG - chr8_2:19630854-19630873 None:intergenic 40.0%
GGGACAAGGTTGAACTTTAA+AGG - chr8_2:19630860-19630879 None:intergenic 40.0%
AAAGTTCAACCTTGTCCCTA+CGG + chr8_2:19630862-19630881 Msa1238810:intron 40.0%
!!! GGTAGCATGGTTTTAAGTTG+CGG + chr8_2:19630991-19631010 Msa1238810:intron 40.0%
CTACTGATGCTTTCTTTAGC+TGG + chr8_2:19631285-19631304 Msa1238810:intron 40.0%
ATGAGAGAGATGAAACAGGA+AGG + chr8_2:19631309-19631328 Msa1238810:intron 40.0%
TGACATTTATGGAGCAGTGA+AGG + chr8_2:19631498-19631517 Msa1238810:CDS 40.0%
TTGCTAAAGATGTTCAGTGG+TGG + chr8_2:19631619-19631638 Msa1238810:intron 40.0%
TGGCATAATCTGTTGTCAAG+TGG + chr8_2:19631639-19631658 Msa1238810:intron 40.0%
TTGAGGATGTCACGCTTTAT+AGG + chr8_2:19631709-19631728 Msa1238810:intron 40.0%
GACATAAACCTAACTCAGAC+AGG - chr8_2:19632049-19632068 None:intergenic 40.0%
GTATGACCTTACCTGTTCAA+AGG - chr8_2:19632275-19632294 None:intergenic 40.0%
TTAACATTGTATGCTCGTCG+CGG - chr8_2:19632298-19632317 None:intergenic 40.0%
AAGCCTCATTCTTGTTGCTA+AGG - chr8_2:19632351-19632370 None:intergenic 40.0%
TCAAGGACCAGGATACTAAA+TGG - chr8_2:19632407-19632426 None:intergenic 40.0%
TGAGAGGAAAGGTGAAGAGA+TGG - chr8_2:19626857-19626876 None:intergenic 45.0%
ATTAGTAGAGGTGAGGGGTT+TGG + chr8_2:19627387-19627406 Msa1238810:intron 45.0%
TTAGTAGAGGTGAGGGGTTT+GGG + chr8_2:19627388-19627407 Msa1238810:intron 45.0%
ATCTTCATAGCAAGTGTGCC+GGG - chr8_2:19627680-19627699 None:intergenic 45.0%
CAAAACAACCAAAACCGTGC+TGG + chr8_2:19628054-19628073 Msa1238810:CDS 45.0%
AGGCAAGGGAATTTCCTACA+GGG + chr8_2:19628235-19628254 Msa1238810:CDS 45.0%
!! CAATCCAGGTTGATACTGGT+AGG - chr8_2:19628283-19628302 None:intergenic 45.0%
CTACCAGTATCAACCTGGAT+TGG + chr8_2:19628281-19628300 Msa1238810:CDS 45.0%
!! TATGCAGGTGCTGATACCAA+TGG + chr8_2:19628306-19628325 Msa1238810:CDS 45.0%
ACGTGTTCATGAAGATGCAG+AGG + chr8_2:19628410-19628429 Msa1238810:CDS 45.0%
TGCAATAGAAGCCTCGAAGA+AGG + chr8_2:19628449-19628468 Msa1238810:CDS 45.0%
TTCTCTGATCTCCTTCTTCG+AGG - chr8_2:19628463-19628482 None:intergenic 45.0%
! TGCTCATGCTTTATTAGCCG+AGG + chr8_2:19628828-19628847 Msa1238810:CDS 45.0%
! GCTCATGCTTTATTAGCCGA+GGG + chr8_2:19628829-19628848 Msa1238810:CDS 45.0%
GTTAGTAGTTCTCTCTCCCT+CGG - chr8_2:19628848-19628867 None:intergenic 45.0%
ACTCTTGGGTGTTAAAGCAG+AGG + chr8_2:19628931-19628950 Msa1238810:intron 45.0%
GAGGCATACAATGAATTGGG+TGG + chr8_2:19628950-19628969 Msa1238810:intron 45.0%
AAAGCCCTTGGGGTTATATG+TGG + chr8_2:19629103-19629122 Msa1238810:intron 45.0%
CAGAACCACATATAACCCCA+AGG - chr8_2:19629111-19629130 None:intergenic 45.0%
GAATGGGCATGGACAAAAGT+AGG - chr8_2:19629147-19629166 None:intergenic 45.0%
CGACATCCCATAACCTGAAA+TGG - chr8_2:19629211-19629230 None:intergenic 45.0%
ATGATGGTCCTGACTTCACT+TGG - chr8_2:19629444-19629463 None:intergenic 45.0%
GCTTTGCATCACACACTCTT+GGG - chr8_2:19629513-19629532 None:intergenic 45.0%
AGCTTTGCATCACACACTCT+TGG - chr8_2:19629514-19629533 None:intergenic 45.0%
AATGCTTCATTGAGCTCGTC+AGG - chr8_2:19629608-19629627 None:intergenic 45.0%
AAATGCTGATCCCAAAAGGC+AGG + chr8_2:19629718-19629737 Msa1238810:CDS 45.0%
AATGCTGATCCCAAAAGGCA+GGG + chr8_2:19629719-19629738 Msa1238810:CDS 45.0%
AAGGATGATCCAATGGTCAG+CGG - chr8_2:19630077-19630096 None:intergenic 45.0%
TTGCAGGAACTGGAGAAAAC+AGG + chr8_2:19630627-19630646 Msa1238810:intron 45.0%
CTTCCAAATGAACCACCCTT+AGG + chr8_2:19630669-19630688 Msa1238810:CDS 45.0%
! ATTGTTGTTCGAATGCCGGA+CGG + chr8_2:19630711-19630730 Msa1238810:CDS 45.0%
CACACTCTTCCAACTTTGCA+AGG + chr8_2:19630910-19630929 Msa1238810:intron 45.0%
CAAATGGTTACCACAACTCC+TGG - chr8_2:19630944-19630963 None:intergenic 45.0%
!! GTATGATCAAGTTGGTCCCT+TGG + chr8_2:19630970-19630989 Msa1238810:intron 45.0%
TGGGATGAGAGAGATGAAAC+AGG + chr8_2:19631305-19631324 Msa1238810:intron 45.0%
ATTTATGGAGCAGTGAAGGC+TGG + chr8_2:19631502-19631521 Msa1238810:CDS 45.0%
AGCGTGACATCCTCAAAAGA+TGG - chr8_2:19631705-19631724 None:intergenic 45.0%
ACTCTCAACCTGTCTGAGTT+AGG + chr8_2:19632038-19632057 Msa1238810:intron 45.0%
CTTGGACCTTTGAACAGGTA+AGG + chr8_2:19632266-19632285 Msa1238810:intron 45.0%
TAACATTGTATGCTCGTCGC+GGG - chr8_2:19632297-19632316 None:intergenic 45.0%
AGGCCTTAGCAACAAGAATG+AGG + chr8_2:19632345-19632364 Msa1238810:CDS 45.0%
! TTGGGTTCTAATCAAGGACC+AGG - chr8_2:19632418-19632437 None:intergenic 45.0%
GAGCGCCCTGATAATTTCTT+GGG - chr8_2:19632436-19632455 None:intergenic 45.0%
TGAGCGCCCTGATAATTTCT+TGG - chr8_2:19632437-19632456 None:intergenic 45.0%
! GCGCTCATCTGACTTTTCTA+GGG + chr8_2:19632450-19632469 Msa1238810:three_prime_UTR 45.0%
!!! TTTTTTTAAATAAAATGTTT+AGG + chr8_2:19627643-19627662 Msa1238810:intron 5.0%
! ATGAAGGTTGCGACGGATTC+CGG - chr8_2:19626936-19626955 None:intergenic 50.0%
GATACGCATGAAGGTTGCGA+CGG - chr8_2:19626943-19626962 None:intergenic 50.0%
GCAACCTTCATGCGTATCAC+AGG + chr8_2:19626945-19626964 Msa1238810:CDS 50.0%
TGCTCCTGTGATACGCATGA+AGG - chr8_2:19626952-19626971 None:intergenic 50.0%
CATGCGTATCACAGGAGCAA+CGG + chr8_2:19626953-19626972 Msa1238810:CDS 50.0%
GAGCGTGCGTAAATGTGAAG+TGG - chr8_2:19627033-19627052 None:intergenic 50.0%
CGAGTGAGTGAATGCGTCTA+AGG - chr8_2:19627091-19627110 None:intergenic 50.0%
TCTTCATAGCAAGTGTGCCG+GGG - chr8_2:19627679-19627698 None:intergenic 50.0%
TCAAGTAGTACACCACCACG+TGG + chr8_2:19628198-19628217 Msa1238810:CDS 50.0%
GAGGCAAGGGAATTTCCTAC+AGG + chr8_2:19628234-19628253 Msa1238810:CDS 50.0%
TGTGCACCATTGATCCCTGT+AGG - chr8_2:19628252-19628271 None:intergenic 50.0%
TCACCCTACCAGTATCAACC+TGG + chr8_2:19628276-19628295 Msa1238810:CDS 50.0%
!! AGCCCAATCCAGGTTGATAC+TGG - chr8_2:19628287-19628306 None:intergenic 50.0%
ATGGAATGACCATGGCTGCA+CGG - chr8_2:19628991-19629010 None:intergenic 50.0%
ACACTGGTAAGGAATGGGCA+TGG - chr8_2:19629158-19629177 None:intergenic 50.0%
GATGTTGCACAACCAGTCAC+TGG + chr8_2:19629484-19629503 Msa1238810:intron 50.0%
TCTGAATGATGTCGTGGGTC+AGG - chr8_2:19629695-19629714 None:intergenic 50.0%
! CTGGATGAACCCTGCCTTTT+GGG - chr8_2:19629731-19629750 None:intergenic 50.0%
! ACTGGATGAACCCTGCCTTT+TGG - chr8_2:19629732-19629751 None:intergenic 50.0%
TCGCCTAAGGGTGGTTCATT+TGG - chr8_2:19630675-19630694 None:intergenic 50.0%
!!! GCTTTTTCATCGCCTAAGGG+TGG - chr8_2:19630684-19630703 None:intergenic 50.0%
!! GGGGTTGGTAGGAGTACAAA+AGG - chr8_2:19630839-19630858 None:intergenic 50.0%
! GTTTTCAGACCGTAGGGACA+AGG - chr8_2:19630874-19630893 None:intergenic 50.0%
!! GAGGGTGTTCCTTGCAAAGT+TGG - chr8_2:19630922-19630941 None:intergenic 50.0%
TGGTTACCACAACTCCTGGA+GGG - chr8_2:19630940-19630959 None:intergenic 50.0%
ATGGTTACCACAACTCCTGG+AGG - chr8_2:19630941-19630960 None:intergenic 50.0%
! AAGTTGGTCCCTTGGTAGCA+TGG + chr8_2:19630978-19630997 Msa1238810:intron 50.0%
ATTCCACTCGCACATTGTGC+AGG - chr8_2:19631749-19631768 None:intergenic 50.0%
CACTGCTTGGACCTTTGAAC+AGG + chr8_2:19632261-19632280 Msa1238810:intron 50.0%
! GGCGCTCATCTGACTTTTCT+AGG + chr8_2:19632449-19632468 Msa1238810:three_prime_UTR 50.0%
! TGAAGGTTGCGACGGATTCC+GGG - chr8_2:19626935-19626954 None:intergenic 55.0%
CGTCGCCGTTCAGAAACTAG+AGG + chr8_2:19626980-19626999 Msa1238810:CDS 55.0%
! GTTTAGGCGAGTTGAGTCCC+CGG + chr8_2:19627659-19627678 Msa1238810:intron 55.0%
AACCAAAACCGTGCTGGGTC+AGG + chr8_2:19628060-19628079 Msa1238810:CDS 55.0%
TGATTCCACCTGACCCAGCA+CGG - chr8_2:19628071-19628090 None:intergenic 55.0%
CACCACGTGGTTCTCCACAA+GGG + chr8_2:19628211-19628230 Msa1238810:CDS 55.0%
ACCACGTGGTTCTCCACAAG+GGG + chr8_2:19628212-19628231 Msa1238810:CDS 55.0%
TTCTCCACAAGGGGAGGCAA+GGG + chr8_2:19628221-19628240 Msa1238810:CDS 55.0%
AATTCCCTTGCCTCCCCTTG+TGG - chr8_2:19628228-19628247 None:intergenic 55.0%
! CAACCTGGATTGGGCTATGC+AGG + chr8_2:19628291-19628310 Msa1238810:CDS 55.0%
ACGGGAGCTTCGAGCAAAAG+AGG + chr8_2:19628789-19628808 Msa1238810:CDS 55.0%
ACTCTTGGGTCTCCAGTGAC+TGG - chr8_2:19629499-19629518 None:intergenic 55.0%
TGTCGTGGGTCAGGCAAAGA+TGG - chr8_2:19629686-19629705 None:intergenic 55.0%
CTTTGCAAGGAACACCCTCC+AGG + chr8_2:19630923-19630942 Msa1238810:intron 55.0%
CCAGAACTGCAATCGCGATG+TGG - chr8_2:19631068-19631087 None:intergenic 55.0%
CCACATCGCGATTGCAGTTC+TGG + chr8_2:19631065-19631084 Msa1238810:intron 55.0%
TGACCTGCACAATGTGCGAG+TGG + chr8_2:19631743-19631762 Msa1238810:intron 55.0%
CGCAATGACGACACTGTCCC+CGG + chr8_2:19626914-19626933 Msa1238810:exon 60.0%
! GAAGGTTGCGACGGATTCCG+GGG - chr8_2:19626934-19626953 None:intergenic 60.0%
GTAGAGGTGAGGGGTTTGGG+TGG + chr8_2:19627391-19627410 Msa1238810:intron 60.0%
! CACCTGACCCAGCACGGTTT+TGG - chr8_2:19628065-19628084 None:intergenic 60.0%
CAAAACCGTGCTGGGTCAGG+TGG + chr8_2:19628063-19628082 Msa1238810:CDS 60.0%
CCTTGTGGAGAACCACGTGG+TGG - chr8_2:19628213-19628232 None:intergenic 60.0%
CCACCACGTGGTTCTCCACA+AGG + chr8_2:19628210-19628229 Msa1238810:CDS 60.0%
TCCCCTTGTGGAGAACCACG+TGG - chr8_2:19628216-19628235 None:intergenic 60.0%
ACGTGGTTCTCCACAAGGGG+AGG + chr8_2:19628215-19628234 Msa1238810:CDS 60.0%
GTTCTCCACAAGGGGAGGCA+AGG + chr8_2:19628220-19628239 Msa1238810:CDS 60.0%
GCACCTGCATAGCCCAATCC+AGG - chr8_2:19628297-19628316 None:intergenic 60.0%
ATGGAGGAACCGTGCAGCCA+TGG + chr8_2:19628979-19628998 Msa1238810:intron 60.0%
GTTGTTCGAATGCCGGACGG+TGG + chr8_2:19630714-19630733 Msa1238810:CDS 60.0%
CGTTCACAACGACCACCGTC+CGG - chr8_2:19630729-19630748 None:intergenic 60.0%
GGAACACCCTCCAGGAGTTG+TGG + chr8_2:19630931-19630950 Msa1238810:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 19626833 19632555 19626833 ID=Msa1238810;Name=Msa1238810
chr8_2 mRNA 19626833 19632555 19626833 ID=Msa1238810-mRNA-1;Parent=Msa1238810;Name=Msa1238810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=85|1|1|1|1|1|10|165|500
chr8_2 exon 19626833 19627001 19626833 ID=Msa1238810-mRNA-1:exon:7227;Parent=Msa1238810-mRNA-1
chr8_2 exon 19627792 19627850 19627792 ID=Msa1238810-mRNA-1:exon:7228;Parent=Msa1238810-mRNA-1
chr8_2 exon 19627993 19628506 19627993 ID=Msa1238810-mRNA-1:exon:7229;Parent=Msa1238810-mRNA-1
chr8_2 exon 19628596 19628679 19628596 ID=Msa1238810-mRNA-1:exon:7230;Parent=Msa1238810-mRNA-1
chr8_2 exon 19628766 19628888 19628766 ID=Msa1238810-mRNA-1:exon:7231;Parent=Msa1238810-mRNA-1
chr8_2 exon 19629590 19629799 19629590 ID=Msa1238810-mRNA-1:exon:7232;Parent=Msa1238810-mRNA-1
chr8_2 exon 19629878 19629997 19629878 ID=Msa1238810-mRNA-1:exon:7233;Parent=Msa1238810-mRNA-1
chr8_2 exon 19630633 19630776 19630633 ID=Msa1238810-mRNA-1:exon:7234;Parent=Msa1238810-mRNA-1
chr8_2 exon 19631481 19631537 19631481 ID=Msa1238810-mRNA-1:exon:7235;Parent=Msa1238810-mRNA-1
chr8_2 exon 19632283 19632555 19632283 ID=Msa1238810-mRNA-1:exon:7236;Parent=Msa1238810-mRNA-1
chr8_2 five_prime_UTR 19626833 19626917 19626833 ID=Msa1238810-mRNA-1:five_prime_utr;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19626918 19627001 19626918 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19627792 19627850 19627792 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19627993 19628506 19627993 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19628596 19628679 19628596 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19628766 19628888 19628766 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19629590 19629799 19629590 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19629878 19629997 19629878 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19630633 19630776 19630633 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19631481 19631537 19631481 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 CDS 19632283 19632390 19632283 ID=Msa1238810-mRNA-1:cds;Parent=Msa1238810-mRNA-1
chr8_2 three_prime_UTR 19632391 19632555 19632391 ID=Msa1238810-mRNA-1:three_prime_utr;Parent=Msa1238810-mRNA-1
Gene Sequence

>Msa1238810

ATGACGACACTGTCCCCGGAATCCGTCGCAACCTTCATGCGTATCACAGGAGCAACGGAGTTCGTCGCCGTTCAGAAACTAGAGGAATATGGGGGCAATCTAAACGAAGCCGTGAATGCACATTTTATTGGAGACAGACACATTCAGGAACAAAATCTTGCAGCTACTGCAACCCCACACTATGATTACTCTGAAGCAAATAATCAAAACAACCAAAACCGTGCTGGGTCAGGTGGAATCATGCCTTTGTTCAATGCTGCTAGAAGATTTAGACCTTCACTACTACTTGACTCAAACTATAGGAGAGAACTTAGAGATCTATGTAACGGGTTTGGTGCTACTACGCTTTCAAGTAGTACACCACCACGTGGTTCTCCACAAGGGGAGGCAAGGGAATTTCCTACAGGGATCAATGGTGCACATGTGTCACCCTACCAGTATCAACCTGGATTGGGCTATGCAGGTGCTGATACCAATGGAAATTTATCATCTCATGGTAGAGGATATTATGGGTCAAATGACTATCAGAATGACTACCCTTTAGCTCAATCAAGTGCTTCACGTGTTCATGAAGATGCAGAGGATGCAATGCTTCTAGCTGCAATAGAAGCCTCGAAGAAGGAGATCAGAGAAAGTTCTTCACAGAGTGCTCATAATCATTCATATTATGATGTGACTCCACAAAGTCATTTTGAACGAGAAGATGATGATTTGGCTCATATCATTTCACTGTCTTTACAGACTGCAGAGAAAGAGGAAGCAATACGGGAGCTTCGAGCAAAAGAGGAAAGTAAAGTACTTGGTGCTCATGCTTTATTAGCCGAGGGAGAGAGAACTACTAACACTAACAGAAGCAAACTAGAGTGGGGTGGTATTTCTCCTGACGAGCTCAATGAAGCATTGCTGATTGAAACTGCGCTTTATGGTGAAACTTCGAATCACAGTTCTCACAAATTTCCATCTTTGCCTGACCCACGACATCATTCAGAAAAAAATGCTGATCCCAAAAGGCAGGGTTCATCCAGTTCAGCATCTCAGTTATTATCCGAGACTCAGTTGATAAGACAACAACAGGATGCTGACTATATAGCATCACTACAAGCTGATAAACAAAAAGAATTGAATTCTCTCAACAAATCTGAAACCCATTCGTCAAAGCAAGAAGAAAAACACAAAAATACGCGTGAAAGAACGGAACTGGAGAAAACAGGTGATGCAAAAAAGATTTTGCTTCCAAATGAACCACCCTTAGGCGATGAAAAAGCAATTACTATTGTTGTTCGAATGCCGGACGGTGGTCGTTGTGAACGTCGCTTCTTCAAAACTGACAAGCTTCGGCTTCTTTTTGATTTCATTGACATTTATGGAGCAGTGAAGGCTGGCACCTATAGAGTTGTAAGGTCATACCCGCGACGAGCATACAATGTTAATGATAGCTCTGCTACTTTGAATGAAGTAGGCCTTAGCAACAAGAATGAGGCTTTATTTCTGGAGTTGATTTAG

Protein sequence

>Msa1238810

MTTLSPESVATFMRITGATEFVAVQKLEEYGGNLNEAVNAHFIGDRHIQEQNLAATATPHYDYSEANNQNNQNRAGSGGIMPLFNAARRFRPSLLLDSNYRRELRDLCNGFGATTLSSSTPPRGSPQGEAREFPTGINGAHVSPYQYQPGLGYAGADTNGNLSSHGRGYYGSNDYQNDYPLAQSSASRVHEDAEDAMLLAAIEASKKEIRESSSQSAHNHSYYDVTPQSHFEREDDDLAHIISLSLQTAEKEEAIRELRAKEESKVLGAHALLAEGERTTNTNRSKLEWGGISPDELNEALLIETALYGETSNHSSHKFPSLPDPRHHSEKNADPKRQGSSSSASQLLSETQLIRQQQDADYIASLQADKQKELNSLNKSETHSSKQEEKHKNTRERTELEKTGDAKKILLPNEPPLGDEKAITIVVRMPDGGRCERRFFKTDKLRLLFDFIDIYGAVKAGTYRVVRSYPRRAYNVNDSSATLNEVGLSNKNEALFLELI*