Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575920 | XP_003631133.1 | 96.438 | 365 | 12 | 1 | 1 | 365 | 1 | 364 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575920 | sp|Q8VWG7|TDX_ARATH | 62.005 | 379 | 128 | 2 | 1 | 364 | 2 | 379 | 4.60e-171 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575920 | G7LE77 | 96.438 | 365 | 12 | 1 | 1 | 365 | 1 | 364 | 0.0 | 721 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa0575920 | -0.818074 | 2.369347e-52 | -8.615850e-47 |
| Msa0074350 | Msa0575920 | 0.802544 | 5.335859e-49 | -8.615850e-47 |
| Msa0075220 | Msa0575920 | 0.812716 | 3.685744e-51 | -8.615850e-47 |
| Msa0081520 | Msa0575920 | 0.807743 | 4.354350e-50 | -8.615850e-47 |
| Msa0090400 | Msa0575920 | 0.801302 | 9.601333e-49 | -8.615850e-47 |
| Msa0092790 | Msa0575920 | 0.809427 | 1.902920e-50 | -8.615850e-47 |
| Msa0093850 | Msa0575920 | 0.803187 | 3.928863e-49 | -8.615850e-47 |
| Msa0105370 | Msa0575920 | 0.808942 | 2.417015e-50 | -8.615850e-47 |
| Msa0136650 | Msa0575920 | 0.826072 | 3.316192e-54 | -8.615850e-47 |
| Msa0137880 | Msa0575920 | 0.826263 | 2.986081e-54 | -8.615850e-47 |
| Msa0167520 | Msa0575920 | 0.815029 | 1.139850e-51 | -8.615850e-47 |
| Msa0174450 | Msa0575920 | 0.812531 | 4.045481e-51 | -8.615850e-47 |
| Msa0225680 | Msa0575920 | 0.814925 | 1.201630e-51 | -8.615850e-47 |
| Msa0378720 | Msa0575920 | 0.809909 | 1.499031e-50 | -8.615850e-47 |
| Msa0380620 | Msa0575920 | 0.815089 | 1.105195e-51 | -8.615850e-47 |
| Msa0428150 | Msa0575920 | 0.802705 | 4.942550e-49 | -8.615850e-47 |
| Msa0430260 | Msa0575920 | 0.833897 | 4.096678e-56 | -8.615850e-47 |
| Msa0435370 | Msa0575920 | 0.803181 | 3.940670e-49 | -8.615850e-47 |
| Msa0435420 | Msa0575920 | 0.837050 | 6.532068e-57 | -8.615850e-47 |
| Msa0435570 | Msa0575920 | 0.827876 | 1.227704e-54 | -8.615850e-47 |
| Msa0472950 | Msa0575920 | 0.827719 | 1.339482e-54 | -8.615850e-47 |
| Msa0474730 | Msa0575920 | 0.816596 | 5.098275e-52 | -8.615850e-47 |
| Msa0255090 | Msa0575920 | 0.812169 | 4.853778e-51 | -8.615850e-47 |
| Msa0259380 | Msa0575920 | 0.808032 | 3.780493e-50 | -8.615850e-47 |
| Msa0267110 | Msa0575920 | 0.826792 | 2.233481e-54 | -8.615850e-47 |
| Msa0292400 | Msa0575920 | 0.820575 | 6.378425e-53 | -8.615850e-47 |
| Msa0294160 | Msa0575920 | 0.806290 | 8.839895e-50 | -8.615850e-47 |
| Msa0349710 | Msa0575920 | 0.802156 | 6.413485e-49 | -8.615850e-47 |
| Msa0500380 | Msa0575920 | 0.823806 | 1.136073e-53 | -8.615850e-47 |
| Msa0532070 | Msa0575920 | 0.824244 | 8.965204e-54 | -8.615850e-47 |
| Msa0569200 | Msa0575920 | 0.813887 | 2.038697e-51 | -8.615850e-47 |
| Msa0569320 | Msa0575920 | 0.811076 | 8.386609e-51 | -8.615850e-47 |
| Msa0571290 | Msa0575920 | 0.815886 | 7.344990e-52 | -8.615850e-47 |
| Msa0575920 | Msa0614110 | 0.802513 | 5.412973e-49 | -8.615850e-47 |
| Msa0575920 | Msa0626450 | 0.836607 | 8.475536e-57 | -8.615850e-47 |
| Msa0575920 | Msa0626490 | 0.834675 | 2.613355e-56 | -8.615850e-47 |
| Msa0575920 | Msa0664600 | 0.832424 | 9.527530e-56 | -8.615850e-47 |
| Msa0575920 | Msa0683570 | 0.806001 | 1.016772e-49 | -8.615850e-47 |
| Msa0575920 | Msa0807260 | 0.804166 | 2.461133e-49 | -8.615850e-47 |
| Msa0575920 | Msa0945110 | 0.834791 | 2.443699e-56 | -8.615850e-47 |
| Msa0575920 | Msa0980140 | 0.804957 | 1.683459e-49 | -8.615850e-47 |
| Msa0575920 | Msa1020480 | 0.803561 | 3.287913e-49 | -8.615850e-47 |
| Msa0575920 | Msa1020510 | 0.822204 | 2.684691e-53 | -8.615850e-47 |
| Msa0575920 | Msa1037640 | 0.800629 | 1.317733e-48 | -8.615850e-47 |
| Msa0575920 | Msa1037950 | 0.803473 | 3.428108e-49 | -8.615850e-47 |
| Msa0575920 | Msa1096960 | 0.811001 | 8.709132e-51 | -8.615850e-47 |
| Msa0575920 | Msa1113340 | 0.816167 | 6.357742e-52 | -8.615850e-47 |
| Msa0575920 | Msa1174780 | 0.801476 | 8.845717e-49 | -8.615850e-47 |
| Msa0575920 | Msa1225700 | 0.804428 | 2.170818e-49 | -8.615850e-47 |
| Msa0575920 | Msa1232710 | 0.802636 | 5.107911e-49 | -8.615850e-47 |
| Msa0575920 | Msa1238810 | 0.801250 | 9.838028e-49 | -8.615850e-47 |
| Msa0575920 | Msa1297230 | 0.800389 | 1.475035e-48 | -8.615850e-47 |
| Msa0575920 | Msa1313300 | 0.804475 | 2.121902e-49 | -8.615850e-47 |
| Msa0575920 | Msa1371910 | 0.801139 | 1.036818e-48 | -8.615850e-47 |
| Msa0575920 | Msa1413620 | 0.807186 | 5.716218e-50 | -8.615850e-47 |
| Msa0575920 | Msa1440960 | 0.838111 | 3.492108e-57 | -8.615850e-47 |
| Msa0575920 | Msa1446810 | 0.810014 | 1.422667e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575920 | MtrunA17_Chr8g0393201 | 87.671 | 365 | 17 | 2 | 1 | 365 | 1 | 337 | 0.0 | 625 |
| Msa0575920 | MtrunA17_Chr4g0057051 | 57.377 | 244 | 82 | 2 | 1 | 224 | 1 | 242 | 1.57e-87 | 270 |
| Msa0575920 | MtrunA17_Chr1g0155721 | 48.649 | 111 | 57 | 0 | 251 | 361 | 2 | 112 | 5.88e-36 | 127 |
| Msa0575920 | MtrunA17_Chr3g0142051 | 46.429 | 112 | 60 | 0 | 251 | 362 | 2 | 113 | 5.19e-31 | 114 |
| Msa0575920 | MtrunA17_Chr5g0404831 | 45.536 | 112 | 61 | 0 | 253 | 364 | 6 | 117 | 1.12e-30 | 113 |
| Msa0575920 | MtrunA17_Chr7g0245141 | 38.843 | 121 | 74 | 0 | 245 | 365 | 14 | 134 | 2.48e-28 | 107 |
| Msa0575920 | MtrunA17_Chr8g0334481 | 37.705 | 122 | 74 | 1 | 240 | 359 | 9 | 130 | 2.17e-26 | 102 |
| Msa0575920 | MtrunA17_Chr7g0216481 | 41.176 | 102 | 60 | 0 | 260 | 361 | 31 | 132 | 5.95e-26 | 101 |
| Msa0575920 | MtrunA17_Chr4g0052481 | 46.316 | 95 | 49 | 2 | 258 | 350 | 62 | 156 | 2.04e-22 | 92.8 |
| Msa0575920 | MtrunA17_Chr2g0316221 | 30.279 | 251 | 141 | 5 | 113 | 362 | 478 | 695 | 1.19e-21 | 96.7 |
| Msa0575920 | MtrunA17_Chr5g0415771 | 43.137 | 102 | 58 | 0 | 257 | 358 | 21 | 122 | 8.19e-21 | 87.0 |
| Msa0575920 | MtrunA17_Chr5g0415761 | 39.623 | 106 | 64 | 0 | 256 | 361 | 21 | 126 | 4.96e-20 | 85.1 |
| Msa0575920 | MtrunA17_Chr2g0319291 | 34.579 | 107 | 70 | 0 | 252 | 358 | 7 | 113 | 1.29e-19 | 83.6 |
| Msa0575920 | MtrunA17_Chr5g0415741 | 41.346 | 104 | 61 | 0 | 255 | 358 | 18 | 121 | 2.62e-17 | 77.4 |
| Msa0575920 | MtrunA17_Chr4g0042051 | 31.132 | 106 | 73 | 0 | 253 | 358 | 8 | 113 | 2.96e-16 | 74.7 |
| Msa0575920 | MtrunA17_Chr2g0280411 | 32.692 | 104 | 70 | 0 | 255 | 358 | 9 | 112 | 3.68e-16 | 74.3 |
| Msa0575920 | MtrunA17_Chr4g0047431 | 34.234 | 111 | 69 | 1 | 255 | 365 | 3 | 109 | 1.28e-14 | 75.1 |
| Msa0575920 | MtrunA17_Chr2g0317731 | 36.170 | 141 | 72 | 7 | 223 | 358 | 42 | 169 | 5.17e-14 | 69.7 |
| Msa0575920 | MtrunA17_Chr3g0125821 | 38.750 | 80 | 47 | 2 | 284 | 361 | 93 | 172 | 1.51e-13 | 68.2 |
| Msa0575920 | MtrunA17_Chr8g0360031 | 40.260 | 77 | 44 | 2 | 284 | 358 | 96 | 172 | 1.12e-11 | 62.8 |
| Msa0575920 | MtrunA17_Chr7g0264661 | 30.120 | 83 | 56 | 1 | 280 | 362 | 48 | 128 | 3.22e-11 | 60.5 |
| Msa0575920 | MtrunA17_Chr3g0097231 | 33.333 | 105 | 68 | 1 | 92 | 194 | 4 | 108 | 3.34e-11 | 64.3 |
| Msa0575920 | MtrunA17_Chr1g0211871 | 35.294 | 85 | 53 | 2 | 259 | 342 | 69 | 152 | 5.23e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575920 | AT3G17880.1 | 62.005 | 379 | 128 | 2 | 1 | 364 | 2 | 379 | 4.68e-172 | 484 |
| Msa0575920 | AT3G17880.2 | 63.441 | 372 | 127 | 3 | 1 | 364 | 2 | 372 | 8.66e-170 | 478 |
| Msa0575920 | AT4G22670.1 | 56.870 | 262 | 83 | 3 | 1 | 234 | 1 | 260 | 2.47e-97 | 296 |
| Msa0575920 | AT3G51030.1 | 47.748 | 111 | 58 | 0 | 251 | 361 | 2 | 112 | 2.85e-32 | 117 |
| Msa0575920 | AT1G45145.1 | 41.818 | 110 | 64 | 0 | 254 | 363 | 4 | 113 | 4.55e-28 | 106 |
| Msa0575920 | AT1G19730.1 | 42.982 | 114 | 64 | 1 | 251 | 363 | 2 | 115 | 1.41e-27 | 105 |
| Msa0575920 | AT3G08710.2 | 40.000 | 105 | 63 | 0 | 255 | 359 | 23 | 127 | 2.58e-26 | 102 |
| Msa0575920 | AT3G08710.3 | 40.000 | 105 | 63 | 0 | 255 | 359 | 23 | 127 | 2.58e-26 | 102 |
| Msa0575920 | AT3G08710.1 | 40.000 | 105 | 63 | 0 | 255 | 359 | 23 | 127 | 2.58e-26 | 102 |
| Msa0575920 | AT5G42980.1 | 44.444 | 108 | 60 | 0 | 254 | 361 | 4 | 111 | 2.67e-26 | 102 |
| Msa0575920 | AT5G39950.1 | 40.000 | 105 | 63 | 0 | 256 | 360 | 26 | 130 | 1.20e-24 | 98.2 |
| Msa0575920 | AT1G59730.1 | 40.741 | 108 | 64 | 0 | 254 | 361 | 20 | 127 | 1.29e-23 | 95.1 |
| Msa0575920 | AT1G69880.1 | 37.615 | 109 | 68 | 0 | 257 | 365 | 39 | 147 | 5.80e-23 | 94.0 |
| Msa0575920 | AT3G56420.1 | 34.259 | 108 | 71 | 0 | 255 | 362 | 40 | 147 | 1.36e-21 | 90.5 |
| Msa0575920 | AT3G56420.2 | 34.259 | 108 | 71 | 0 | 255 | 362 | 40 | 147 | 1.36e-21 | 90.5 |
| Msa0575920 | AT3G56420.3 | 34.259 | 108 | 71 | 0 | 255 | 362 | 40 | 147 | 1.36e-21 | 90.5 |
| Msa0575920 | AT2G40790.2 | 34.862 | 109 | 68 | 1 | 260 | 365 | 42 | 150 | 2.54e-19 | 84.3 |
| Msa0575920 | AT2G40790.1 | 34.862 | 109 | 68 | 1 | 260 | 365 | 42 | 150 | 2.54e-19 | 84.3 |
| Msa0575920 | AT2G35010.2 | 40.179 | 112 | 65 | 1 | 251 | 360 | 80 | 191 | 3.61e-19 | 85.1 |
| Msa0575920 | AT2G35010.1 | 40.179 | 112 | 65 | 1 | 251 | 360 | 80 | 191 | 3.61e-19 | 85.1 |
| Msa0575920 | AT1G53300.1 | 24.151 | 265 | 167 | 4 | 100 | 363 | 468 | 699 | 7.93e-18 | 85.5 |
| Msa0575920 | AT1G31020.1 | 43.689 | 103 | 56 | 1 | 260 | 360 | 54 | 156 | 2.38e-17 | 79.0 |
| Msa0575920 | AT3G58620.1 | 24.427 | 262 | 163 | 4 | 100 | 360 | 452 | 679 | 9.61e-16 | 79.3 |
| Msa0575920 | AT1G11530.1 | 32.692 | 104 | 70 | 0 | 255 | 358 | 2 | 105 | 2.27e-15 | 72.4 |
| Msa0575920 | AT2G42580.1 | 23.846 | 260 | 163 | 4 | 100 | 358 | 461 | 686 | 6.88e-14 | 73.6 |
| Msa0575920 | AT4G32580.1 | 34.118 | 85 | 56 | 0 | 281 | 365 | 25 | 109 | 1.12e-13 | 68.6 |
| Msa0575920 | AT3G15360.1 | 41.558 | 77 | 43 | 2 | 284 | 358 | 111 | 187 | 9.76e-13 | 66.6 |
| Msa0575920 | AT4G04950.1 | 34.524 | 84 | 55 | 0 | 281 | 364 | 25 | 108 | 1.06e-12 | 69.7 |
| Msa0575920 | AT1G03680.1 | 38.961 | 77 | 45 | 2 | 284 | 358 | 99 | 175 | 2.85e-11 | 62.4 |
| Msa0575920 | AT1G04190.1 | 29.412 | 153 | 92 | 4 | 82 | 234 | 1 | 137 | 3.55e-11 | 64.3 |
| Msa0575920 | AT3G02730.1 | 40.000 | 90 | 51 | 2 | 278 | 364 | 88 | 177 | 5.44e-11 | 61.6 |
Find 76 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGGTTCCGTCTTGGGTT+GGG | 0.281608 | 4_1:+79903824 | None:intergenic |
| GATTGCTATGGCACTTAAAA+AGG | 0.281728 | 4_1:-79903274 | Msa0575920:intron |
| GAGTGGAAGCAAACCCTAAA+TGG | 0.315054 | 4_1:-79904056 | Msa0575920:exon |
| AGCAAACCCTAAATGGATAT+TGG | 0.323083 | 4_1:-79904049 | Msa0575920:exon |
| TTGTATCCTTTGGCTGAGTC+TGG | 0.328325 | 4_1:+79903387 | None:intergenic |
| TGATTCTGACACTGCCTTGA+AGG | 0.370019 | 4_1:-79903499 | Msa0575920:intron |
| AGCTCTGGTGGCATAGAGTA+TGG | 0.382849 | 4_1:+79903563 | None:intergenic |
| TCTTCAAATCTTATCTTCTC+AGG | 0.387415 | 4_1:-79903949 | Msa0575920:intron |
| TCAACATCAGGTTCCGTCTT+GGG | 0.391246 | 4_1:+79903819 | None:intergenic |
| AATTGAAAGTTCCAATATAG+TGG | 0.404684 | 4_1:-79900418 | Msa0575920:three_prime_UTR |
| GATAAGATTTGAAGAATTGA+AGG | 0.406427 | 4_1:+79903957 | None:intergenic |
| TGAATGTGGATTCAACAAAA+TGG | 0.408169 | 4_1:+79903587 | None:intergenic |
| AACCACTCTCTGATACTTCT+CGG | 0.409422 | 4_1:+79900688 | None:intergenic |
| TCAGGTTCCGTCTTGGGTTG+GGG | 0.411282 | 4_1:+79903825 | None:intergenic |
| GAATCACGGATAGCGGCATT+TGG | 0.421359 | 4_1:+79903516 | None:intergenic |
| TATTCACTCTGTTAGTGAAC+TGG | 0.425636 | 4_1:-79900819 | Msa0575920:CDS |
| ATAGTTGTGCAGCATCCCTT+TGG | 0.428829 | 4_1:+79903679 | None:intergenic |
| CGCTTGATCAAAATTACCTT+GGG | 0.441800 | 4_1:+79903629 | None:intergenic |
| CAATGACCCTCCTCAAAAGA+TGG | 0.446444 | 4_1:-79903730 | Msa0575920:CDS |
| AGGATTATCAAGGGCTATGT+TGG | 0.453178 | 4_1:-79903358 | Msa0575920:CDS |
| CATTTAAAAGGGCAAGTGAT+TGG | 0.455412 | 4_1:-79900842 | Msa0575920:intron |
| CAAGGGCTATGTTGGGACTC+TGG | 0.461519 | 4_1:-79903350 | Msa0575920:CDS |
| GCATTGTCTGCTTTAAAAGA+TGG | 0.463326 | 4_1:-79902123 | Msa0575920:intron |
| CATCAGGTTCCGTCTTGGGT+TGG | 0.464495 | 4_1:+79903823 | None:intergenic |
| GTTCCGTCTTGGGTTGGGGA+GGG | 0.464783 | 4_1:+79903829 | None:intergenic |
| TTCACCACTTTATACAAGCT+TGG | 0.467131 | 4_1:-79900711 | Msa0575920:CDS |
| ACAAAATACGAGGATTATCA+AGG | 0.476963 | 4_1:-79903368 | Msa0575920:CDS |
| ATGGAAGCAACGAACCTTCA+AGG | 0.482278 | 4_1:+79903485 | None:intergenic |
| TACAGTTATAAAATCAATAA+CGG | 0.502073 | 4_1:+79900379 | None:intergenic |
| ATCAACATCAGGTTCCGTCT+TGG | 0.506363 | 4_1:+79903818 | None:intergenic |
| GGTTCCGTCTTGGGTTGGGG+AGG | 0.509145 | 4_1:+79903828 | None:intergenic |
| GCGCTTGATCAAAATTACCT+TGG | 0.514542 | 4_1:+79903628 | None:intergenic |
| TCATCATTATCATCAACATC+AGG | 0.516507 | 4_1:+79903807 | None:intergenic |
| GGTAATAACTTAAAGAGAGC+CGG | 0.517504 | 4_1:+79900511 | None:intergenic |
| TGAACGCTTACGAAAGCAAA+AGG | 0.522287 | 4_1:-79903129 | Msa0575920:CDS |
| GGATTATCAAGGGCTATGTT+GGG | 0.522634 | 4_1:-79903357 | Msa0575920:CDS |
| TACTTTACTGCAACATGGTG+TGG | 0.523444 | 4_1:-79900749 | Msa0575920:CDS |
| GAAGGAGTATGAAGAAGAGA+AGG | 0.524677 | 4_1:+79903980 | None:intergenic |
| AGAGATTGACAGTGTGGTGG+GGG | 0.533886 | 4_1:-79900573 | Msa0575920:CDS |
| ATAAGATTTGAAGAATTGAA+GGG | 0.542023 | 4_1:+79903958 | None:intergenic |
| TCAAGTAACTGAAGACCAAA+GGG | 0.543458 | 4_1:-79903694 | Msa0575920:CDS |
| TCTTCAGTTACTTGAGCAGA+GGG | 0.545983 | 4_1:+79903702 | None:intergenic |
| AGGAAGATTGCTCAACATGC+CGG | 0.551486 | 4_1:-79900530 | Msa0575920:CDS |
| AAAGAGATTGACAGTGTGGT+GGG | 0.555285 | 4_1:-79900575 | Msa0575920:CDS |
| CCCATAAAATTGAGGAGCAT+AGG | 0.561420 | 4_1:-79903160 | Msa0575920:CDS |
| TGTTTACATGCCCATAGTGT+CGG | 0.563368 | 4_1:-79900445 | Msa0575920:three_prime_UTR |
| AGTTGATATAGATGAGGCAG+TGG | 0.566064 | 4_1:-79900657 | Msa0575920:CDS |
| GTCTTCAGTTACTTGAGCAG+AGG | 0.568031 | 4_1:+79903701 | None:intergenic |
| GCCAAATGCCCATAAAATTG+AGG | 0.568287 | 4_1:-79903168 | Msa0575920:CDS |
| CAGTGGATGTCGCAGCACGC+TGG | 0.569047 | 4_1:-79900640 | Msa0575920:CDS |
| CTCAAGTAACTGAAGACCAA+AGG | 0.574078 | 4_1:-79903695 | Msa0575920:CDS |
| TCGGCCAAGCTTGTATAAAG+TGG | 0.578240 | 4_1:+79900707 | None:intergenic |
| GATTTGAAGAATTGAAGGGA+AGG | 0.584202 | 4_1:+79903962 | None:intergenic |
| CATCCCTCCCCAACCCAAGA+CGG | 0.588671 | 4_1:-79903832 | Msa0575920:CDS |
| GCAATTGATGCTATATCCCA+AGG | 0.590067 | 4_1:-79903645 | Msa0575920:CDS |
| AATGACCCTCCTCAAAAGAT+GGG | 0.593153 | 4_1:-79903729 | Msa0575920:CDS |
| GCATAGAGTATGGATGAATG+TGG | 0.594896 | 4_1:+79903573 | None:intergenic |
| TTTAAAAGTTGATATAGATG+AGG | 0.601088 | 4_1:-79900663 | Msa0575920:CDS |
| CAAAGAGATTGACAGTGTGG+TGG | 0.605311 | 4_1:-79900576 | Msa0575920:CDS |
| TCAAGGCAGTGTCAGAATCA+CGG | 0.606228 | 4_1:+79903502 | None:intergenic |
| TCTTGTCTTGTTGACGACAG+TGG | 0.609777 | 4_1:+79904157 | None:intergenic |
| TGTAAACAGAAGACACAACA+TGG | 0.612640 | 4_1:+79900460 | None:intergenic |
| TGTCTTGTTGACGACAGTGG+CGG | 0.615566 | 4_1:+79904160 | None:intergenic |
| TTATGATGAAGAGATTGCTA+TGG | 0.616304 | 4_1:-79903286 | Msa0575920:CDS |
| TTCTGTACTTTACTGCAACA+TGG | 0.622354 | 4_1:-79900754 | Msa0575920:CDS |
| ATCAATCCAGACTCAGCCAA+AGG | 0.627906 | 4_1:-79903393 | Msa0575920:CDS |
| GTGGTGAAATGTAACGACAA+GGG | 0.632549 | 4_1:+79900726 | None:intergenic |
| AAGAGATTGACAGTGTGGTG+GGG | 0.633527 | 4_1:-79900574 | Msa0575920:CDS |
| GGCCGAGAAGTATCAGAGAG+TGG | 0.634912 | 4_1:-79900690 | Msa0575920:CDS |
| CAAAATACGAGGATTATCAA+GGG | 0.635607 | 4_1:-79903367 | Msa0575920:CDS |
| AGTGTCAGAATCACGGATAG+CGG | 0.639101 | 4_1:+79903509 | None:intergenic |
| AACGCAGTCTACTGACTGAG+TGG | 0.658419 | 4_1:-79904073 | Msa0575920:five_prime_UTR |
| ATTACATTAGAGTTCTAACA+AGG | 0.667636 | 4_1:+79900490 | None:intergenic |
| AGTGGTGAAATGTAACGACA+AGG | 0.675536 | 4_1:+79900725 | None:intergenic |
| GCCAAAGGATACAAAATACG+AGG | 0.683690 | 4_1:-79903378 | Msa0575920:CDS |
| TGGCAAAGAGATTGACAGTG+TGG | 0.743695 | 4_1:-79900579 | Msa0575920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAAATTATAGTTTTCA+AGG | - | chr4_1:79901579-79901598 | Msa0575920:intron | 10.0% |
| !! | CTTAACAAAATTAATAAATA+AGG | - | chr4_1:79903061-79903080 | Msa0575920:intron | 10.0% |
| !!! | AGAATGTATTCAATATTTTT+TGG | - | chr4_1:79900317-79900336 | Msa0575920:three_prime_UTR | 15.0% |
| !!! | TAACTTTTTTCTTTCTTTAA+GGG | + | chr4_1:79900396-79900415 | None:intergenic | 15.0% |
| !!! | TTAACTTTTTTCTTTCTTTA+AGG | + | chr4_1:79900397-79900416 | None:intergenic | 15.0% |
| !! | TTAAAGAAAGAAAAAAGTTA+AGG | - | chr4_1:79900396-79900415 | Msa0575920:three_prime_UTR | 15.0% |
| !!! | TTTTTAAAAACAAACTGAAA+GGG | + | chr4_1:79901567-79901586 | None:intergenic | 15.0% |
| !!! | ATTTTTAAAAACAAACTGAA+AGG | + | chr4_1:79901568-79901587 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAGAAAAATGT+TGG | + | chr4_1:79903927-79903946 | None:intergenic | 15.0% |
| !!! | ACATTTTTCTTTGTAAAAAA+TGG | - | chr4_1:79903927-79903946 | Msa0575920:intron | 15.0% |
| !! | TACAGTTATAAAATCAATAA+CGG | + | chr4_1:79904150-79904169 | None:intergenic | 15.0% |
| !!! | TGATTTTATAACTGTAATAT+TGG | - | chr4_1:79904154-79904173 | Msa0575920:five_prime_UTR | 15.0% |
| !!! | GATTTTATAACTGTAATATT+GGG | - | chr4_1:79904155-79904174 | Msa0575920:five_prime_UTR | 15.0% |
| !!! | AACTTTTTTCTTTCTTTAAG+GGG | + | chr4_1:79900395-79900414 | None:intergenic | 20.0% |
| !! | ATAAGATTTGAAGAATTGAA+GGG | + | chr4_1:79900571-79900590 | None:intergenic | 20.0% |
| !!! | AAAACAGCAATATTTTAGTT+TGG | + | chr4_1:79901496-79901515 | None:intergenic | 20.0% |
| !!! | AACTATTAGAATTTGAGATT+GGG | + | chr4_1:79901978-79901997 | None:intergenic | 20.0% |
| !!! | AAACTATTAGAATTTGAGAT+TGG | + | chr4_1:79901979-79901998 | None:intergenic | 20.0% |
| !!! | GCAGTTCATATAAAATTTTT+AGG | + | chr4_1:79902634-79902653 | None:intergenic | 20.0% |
| !! | AAATAAGTGTACAAAAAAAC+AGG | - | chr4_1:79902919-79902938 | Msa0575920:intron | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | - | chr4_1:79902975-79902994 | Msa0575920:intron | 20.0% |
| !!! | TTTTGCATAAATTTAGTGAT+AGG | - | chr4_1:79903307-79903326 | Msa0575920:CDS | 20.0% |
| !! | TTTGCATAAATTTAGTGATA+GGG | - | chr4_1:79903308-79903327 | Msa0575920:CDS | 20.0% |
| !! | ACATGAACTTATAGTTAATT+TGG | + | chr4_1:79903359-79903378 | None:intergenic | 20.0% |
| !! | CAAAAAACTTAGTAGATTAA+GGG | + | chr4_1:79903535-79903554 | None:intergenic | 20.0% |
| !! | ACAAAAAACTTAGTAGATTA+AGG | + | chr4_1:79903536-79903555 | None:intergenic | 20.0% |
| !!! | TCTACTAAGTTTTTTGTTTT+TGG | - | chr4_1:79903539-79903558 | Msa0575920:CDS | 20.0% |
| !!! | TTTAAAAGTTGATATAGATG+AGG | - | chr4_1:79903863-79903882 | Msa0575920:intron | 20.0% |
| !! | AAAAATTGTAACGTATGAAA+TGG | - | chr4_1:79904179-79904198 | Msa0575920:five_prime_UTR | 20.0% |
| ! | GATCTTGAAAAAAGAATTAG+GGG | + | chr4_1:79900347-79900366 | None:intergenic | 25.0% |
| ! | GGATCTTGAAAAAAGAATTA+GGG | + | chr4_1:79900348-79900367 | None:intergenic | 25.0% |
| !! | ACTTTTCCAATATCCATTTA+GGG | + | chr4_1:79900486-79900505 | None:intergenic | 25.0% |
| !! | TACTTTTCCAATATCCATTT+AGG | + | chr4_1:79900487-79900506 | None:intergenic | 25.0% |
| ! | GATAAGATTTGAAGAATTGA+AGG | + | chr4_1:79900572-79900591 | None:intergenic | 25.0% |
| ! | ACAAAACAAGAGATTGAAAT+GGG | + | chr4_1:79900658-79900677 | None:intergenic | 25.0% |
| ! | AGAAAAAAATTGTGTTTGTG+TGG | + | chr4_1:79901087-79901106 | None:intergenic | 25.0% |
| !!! | TCTTATATTTTTTACTGCAC+AGG | - | chr4_1:79901331-79901350 | Msa0575920:intron | 25.0% |
| ! | ATCAAATATCTGGACTTATT+AGG | - | chr4_1:79901637-79901656 | Msa0575920:intron | 25.0% |
| !!! | ACTATGAGAAAGTTTTTTCA+AGG | + | chr4_1:79902006-79902025 | None:intergenic | 25.0% |
| !! | ACAAATCAACATATTTTGCT+GGG | - | chr4_1:79902061-79902080 | Msa0575920:intron | 25.0% |
| !! | TGTGTGAAATGGAATTTTAA+AGG | - | chr4_1:79902117-79902136 | Msa0575920:intron | 25.0% |
| ! | AGAATGAATTGTAGGAAATT+AGG | + | chr4_1:79902260-79902279 | None:intergenic | 25.0% |
| !!! | TGTTTTTGAAGTGCATATAT+AGG | + | chr4_1:79902323-79902342 | None:intergenic | 25.0% |
| !!! | TATAAAATTTTTAGGCTGTG+AGG | + | chr4_1:79902626-79902645 | None:intergenic | 25.0% |
| !!! | TATCATCGTATTTTGTTTGT+AGG | - | chr4_1:79902690-79902709 | Msa0575920:intron | 25.0% |
| !!! | ATCATCGTATTTTGTTTGTA+GGG | - | chr4_1:79902691-79902710 | Msa0575920:intron | 25.0% |
| ! | TTTGAACAATAGATAATGAC+CGG | - | chr4_1:79902728-79902747 | Msa0575920:intron | 25.0% |
| !! | CTATTGGTAATAAATTGTCA+TGG | - | chr4_1:79903150-79903169 | Msa0575920:CDS | 25.0% |
| ! | TGAAAGGTCTGATAAAATTT+AGG | - | chr4_1:79903181-79903200 | Msa0575920:intron | 25.0% |
| ! | GAAAGGTCTGATAAAATTTA+GGG | - | chr4_1:79903182-79903201 | Msa0575920:intron | 25.0% |
| !!! | TAGACAGTATTTAACTTTTG+AGG | + | chr4_1:79903464-79903483 | None:intergenic | 25.0% |
| ! | TTAAGGGAAGAAAAATAATC+AGG | + | chr4_1:79903519-79903538 | None:intergenic | 25.0% |
| ! | AGTTGATCTATTTAGTTAAG+AGG | - | chr4_1:79903565-79903584 | Msa0575920:CDS | 25.0% |
| !!! | ATATTTTTGTTGCCATTACT+TGG | - | chr4_1:79903604-79903623 | Msa0575920:CDS | 25.0% |
| !! | ATTACATTAGAGTTCTAACA+AGG | + | chr4_1:79904039-79904058 | None:intergenic | 25.0% |
| ! | AATTGAAAGTTCCAATATAG+TGG | - | chr4_1:79904108-79904127 | Msa0575920:five_prime_UTR | 25.0% |
| ! | AACAACAAAAACCACTATAT+TGG | + | chr4_1:79904122-79904141 | None:intergenic | 25.0% |
| CGGATCTTGAAAAAAGAATT+AGG | + | chr4_1:79900349-79900368 | None:intergenic | 30.0% | |
| TCTTCAAATCTTATCTTCTC+AGG | - | chr4_1:79900577-79900596 | Msa0575920:CDS | 30.0% | |
| CACAAAACAAGAGATTGAAA+TGG | + | chr4_1:79900659-79900678 | None:intergenic | 30.0% | |
| !!! | ATCTCTTGTTTTGTGTAGTT+TGG | - | chr4_1:79900664-79900683 | Msa0575920:CDS | 30.0% |
| !!! | TCTCTTGTTTTGTGTAGTTT+GGG | - | chr4_1:79900665-79900684 | Msa0575920:CDS | 30.0% |
| TCATCATTATCATCAACATC+AGG | + | chr4_1:79900722-79900741 | None:intergenic | 30.0% | |
| TGAATGTGGATTCAACAAAA+TGG | + | chr4_1:79900942-79900961 | None:intergenic | 30.0% | |
| CTTAATAAAAACACTAGCTC+TGG | + | chr4_1:79900981-79901000 | None:intergenic | 30.0% | |
| AAAATTGTGTTTGTGTGGAA+TGG | + | chr4_1:79901082-79901101 | None:intergenic | 30.0% | |
| ATTGATCTGGAAGAAAGAAA+TGG | + | chr4_1:79901119-79901138 | None:intergenic | 30.0% | |
| ACAAAATACGAGGATTATCA+AGG | - | chr4_1:79901158-79901177 | Msa0575920:intron | 30.0% | |
| CAAAATACGAGGATTATCAA+GGG | - | chr4_1:79901159-79901178 | Msa0575920:intron | 30.0% | |
| TTATGATGAAGAGATTGCTA+TGG | - | chr4_1:79901240-79901259 | Msa0575920:intron | 30.0% | |
| CTATCTCAACCTTATAAAAC+CGG | + | chr4_1:79901954-79901973 | None:intergenic | 30.0% | |
| !! | TTCTCATAGTTAGTCTTTGT+TGG | - | chr4_1:79902016-79902035 | Msa0575920:intron | 30.0% |
| !! | TCTCATAGTTAGTCTTTGTT+GGG | - | chr4_1:79902017-79902036 | Msa0575920:intron | 30.0% |
| TGTTGGGTAACAATAGATTT+AGG | - | chr4_1:79902033-79902052 | Msa0575920:intron | 30.0% | |
| GTTGGGTAACAATAGATTTA+GGG | - | chr4_1:79902034-79902053 | Msa0575920:intron | 30.0% | |
| TTGGGTAACAATAGATTTAG+GGG | - | chr4_1:79902035-79902054 | Msa0575920:intron | 30.0% | |
| ! | GACAAATCAACATATTTTGC+TGG | - | chr4_1:79902060-79902079 | Msa0575920:intron | 30.0% |
| CTGATAACTTCAGCTTATTT+GGG | - | chr4_1:79902143-79902162 | Msa0575920:intron | 30.0% | |
| TGACTAGAAGAATGAATTGT+AGG | + | chr4_1:79902268-79902287 | None:intergenic | 30.0% | |
| TTGGCAATTTCAATTCCATA+AGG | + | chr4_1:79902451-79902470 | None:intergenic | 30.0% | |
| ! | ATAGGATCAGAGGTATAATA+TGG | + | chr4_1:79902526-79902545 | None:intergenic | 30.0% |
| !! | TCATCGTATTTTGTTTGTAG+GGG | - | chr4_1:79902692-79902711 | Msa0575920:intron | 30.0% |
| CAAATGAGTGGGAAAATATT+AGG | - | chr4_1:79903023-79903042 | Msa0575920:intron | 30.0% | |
| TAGATGTTGAACTAAATGCA+TGG | + | chr4_1:79903133-79903152 | None:intergenic | 30.0% | |
| ! | GCATTTAGTTCAACATCTAT+TGG | - | chr4_1:79903134-79903153 | Msa0575920:CDS | 30.0% |
| TAAATTTAGTGATAGGGTGT+AGG | - | chr4_1:79903314-79903333 | Msa0575920:CDS | 30.0% | |
| AAATTTAGTGATAGGGTGTA+GGG | - | chr4_1:79903315-79903334 | Msa0575920:CDS | 30.0% | |
| TGCTGAAAAATTACTCTCAA+GGG | + | chr4_1:79903414-79903433 | None:intergenic | 30.0% | |
| ATGCTGAAAAATTACTCTCA+AGG | + | chr4_1:79903415-79903434 | None:intergenic | 30.0% | |
| AAAATAATCAGGTGGCAAAA+AGG | + | chr4_1:79903508-79903527 | None:intergenic | 30.0% | |
| !! | TCAAGTTGAATACCAAGTAA+TGG | + | chr4_1:79903619-79903638 | None:intergenic | 30.0% |
| AATTAAGTGACCTATTGCAT+TGG | - | chr4_1:79903658-79903677 | Msa0575920:CDS | 30.0% | |
| CAGACAAAAATACACTTGAA+AGG | - | chr4_1:79903976-79903995 | Msa0575920:CDS | 30.0% | |
| AGCAAACCCTAAATGGATAT+TGG | - | chr4_1:79900477-79900496 | Msa0575920:three_prime_UTR | 35.0% | |
| GATTTGAAGAATTGAAGGGA+AGG | + | chr4_1:79900567-79900586 | None:intergenic | 35.0% | |
| TCAAGTAACTGAAGACCAAA+GGG | - | chr4_1:79900832-79900851 | Msa0575920:CDS | 35.0% | |
| CGCTTGATCAAAATTACCTT+GGG | + | chr4_1:79900900-79900919 | None:intergenic | 35.0% | |
| !! | AATAAAAACACTAGCTCTGG+TGG | + | chr4_1:79900978-79900997 | None:intergenic | 35.0% |
| ATGGAACAAGTTAGGAGAAA+TGG | + | chr4_1:79901063-79901082 | None:intergenic | 35.0% | |
| ! | TCCTCGTATTTTGTATCCTT+TGG | + | chr4_1:79901152-79901171 | None:intergenic | 35.0% |
| GATTGCTATGGCACTTAAAA+AGG | - | chr4_1:79901252-79901271 | Msa0575920:intron | 35.0% | |
| TAATCTCGTCTGAAGAAAGT+AGG | + | chr4_1:79901285-79901304 | None:intergenic | 35.0% | |
| ! | TCCTCAATTTTATGGGCATT+TGG | + | chr4_1:79901362-79901381 | None:intergenic | 35.0% |
| ! | CCTATGCTCCTCAATTTTAT+GGG | + | chr4_1:79901369-79901388 | None:intergenic | 35.0% |
| ! | TCCTATGCTCCTCAATTTTA+TGG | + | chr4_1:79901370-79901389 | None:intergenic | 35.0% |
| ! | TCATTTTGTGGTTGCTTCTT+CGG | + | chr4_1:79901440-79901459 | None:intergenic | 35.0% |
| ! | CTTACTTGAGCTTCATTTTG+TGG | + | chr4_1:79901452-79901471 | None:intergenic | 35.0% |
| TATAGTATGCGCATCAGTTA+TGG | + | chr4_1:79901527-79901546 | None:intergenic | 35.0% | |
| CAGATAGATCATAGATGGAT+AGG | + | chr4_1:79901611-79901630 | None:intergenic | 35.0% | |
| CAAGACAGATAGATCATAGA+TGG | + | chr4_1:79901616-79901635 | None:intergenic | 35.0% | |
| CATCTATGATCTATCTGTCT+TGG | - | chr4_1:79901614-79901633 | Msa0575920:intron | 35.0% | |
| TCTGTCTTGGATCAAATATC+TGG | - | chr4_1:79901627-79901646 | Msa0575920:intron | 35.0% | |
| GAGTCTATCCAAGTTCTATT+TGG | - | chr4_1:79901806-79901825 | Msa0575920:intron | 35.0% | |
| AAATAGATGTGTCCTGAACA+CGG | - | chr4_1:79901895-79901914 | Msa0575920:intron | 35.0% | |
| ! | AATCAACATATTTTGCTGGG+CGG | - | chr4_1:79902064-79902083 | Msa0575920:intron | 35.0% |
| !! | AGTTTGTTGCTTGTGTGAAA+TGG | - | chr4_1:79902106-79902125 | Msa0575920:intron | 35.0% |
| GCTGATAACTTCAGCTTATT+TGG | - | chr4_1:79902142-79902161 | Msa0575920:intron | 35.0% | |
| AAGAAAACTAGAACATGGCA+AGG | + | chr4_1:79902172-79902191 | None:intergenic | 35.0% | |
| ACTGCAAGAAAACTAGAACA+TGG | + | chr4_1:79902177-79902196 | None:intergenic | 35.0% | |
| !!! | TGTTCTAGTTTTCTTGCAGT+AGG | - | chr4_1:79902177-79902196 | Msa0575920:intron | 35.0% |
| TCTTCTAGTCATCAAAGTTC+CGG | - | chr4_1:79902277-79902296 | Msa0575920:intron | 35.0% | |
| TGCATCTTTATCCTGCAAAA+AGG | + | chr4_1:79902386-79902405 | None:intergenic | 35.0% | |
| !! | GCATTGTCTGCTTTAAAAGA+TGG | - | chr4_1:79902403-79902422 | Msa0575920:intron | 35.0% |
| TTTCAATTCCATAAGGCAGA+AGG | + | chr4_1:79902444-79902463 | None:intergenic | 35.0% | |
| AGCAATTCAACGACAAGATT+TGG | + | chr4_1:79902470-79902489 | None:intergenic | 35.0% | |
| TGTCGTTGAATTGCTTATTC+TGG | - | chr4_1:79902475-79902494 | Msa0575920:intron | 35.0% | |
| ACTACTTGAAATCCCTGTTT+AGG | - | chr4_1:79902659-79902678 | Msa0575920:intron | 35.0% | |
| GATAAACACAGACCTAAACA+GGG | + | chr4_1:79902674-79902693 | None:intergenic | 35.0% | |
| TGATAAACACAGACCTAAAC+AGG | + | chr4_1:79902675-79902694 | None:intergenic | 35.0% | |
| CAAACCAGAATATCTAACAC+CGG | + | chr4_1:79902750-79902769 | None:intergenic | 35.0% | |
| ! | GGGTCAAATATCTAGTTTGA+TGG | + | chr4_1:79902801-79902820 | None:intergenic | 35.0% |
| AAGGGATTGACATACGAATA+AGG | - | chr4_1:79902844-79902863 | Msa0575920:intron | 35.0% | |
| CAATTTCATTCCTATCCTGT+TGG | + | chr4_1:79902876-79902895 | None:intergenic | 35.0% | |
| CAACAGGATAGGAATGAAAT+TGG | - | chr4_1:79902874-79902893 | Msa0575920:intron | 35.0% | |
| TGTACAAAAAAACAGGCAAG+AGG | - | chr4_1:79902926-79902945 | Msa0575920:intron | 35.0% | |
| AAAAAAACAGGCAAGAGGAT+AGG | - | chr4_1:79902931-79902950 | Msa0575920:intron | 35.0% | |
| CAAGAGGATAGGAATGAAAT+TGG | - | chr4_1:79902942-79902961 | Msa0575920:intron | 35.0% | |
| !!! | GTGCGATGCATTTTTTTAGA+TGG | - | chr4_1:79902964-79902983 | Msa0575920:intron | 35.0% |
| AACCTAATACAGCAAATGAG+TGG | - | chr4_1:79903011-79903030 | Msa0575920:intron | 35.0% | |
| ACCTAATACAGCAAATGAGT+GGG | - | chr4_1:79903012-79903031 | Msa0575920:intron | 35.0% | |
| ! | TTGTGGCAATGCTTACATTT+TGG | - | chr4_1:79903224-79903243 | Msa0575920:intron | 35.0% |
| AGGGAAGAAAAATAATCAGG+TGG | + | chr4_1:79903516-79903535 | None:intergenic | 35.0% | |
| TTAAATGCCACCAATGCAAT+AGG | + | chr4_1:79903671-79903690 | None:intergenic | 35.0% | |
| ! | TTGCATTGGTGGCATTTAAA+AGG | - | chr4_1:79903672-79903691 | Msa0575920:CDS | 35.0% |
| ! | TGCATTGGTGGCATTTAAAA+GGG | - | chr4_1:79903673-79903692 | Msa0575920:CDS | 35.0% |
| CATTTAAAAGGGCAAGTGAT+TGG | - | chr4_1:79903684-79903703 | Msa0575920:CDS | 35.0% | |
| TATTCACTCTGTTAGTGAAC+TGG | - | chr4_1:79903707-79903726 | Msa0575920:CDS | 35.0% | |
| TTCTGTACTTTACTGCAACA+TGG | - | chr4_1:79903772-79903791 | Msa0575920:CDS | 35.0% | |
| TTCACCACTTTATACAAGCT+TGG | - | chr4_1:79903815-79903834 | Msa0575920:CDS | 35.0% | |
| GGTAATAACTTAAAGAGAGC+CGG | + | chr4_1:79904018-79904037 | None:intergenic | 35.0% | |
| TGTAAACAGAAGACACAACA+TGG | + | chr4_1:79904069-79904088 | None:intergenic | 35.0% | |
| !! | TCAATTTTGACCGACACTAT+GGG | + | chr4_1:79904094-79904113 | None:intergenic | 35.0% |
| !! | TTCAATTTTGACCGACACTA+TGG | + | chr4_1:79904095-79904114 | None:intergenic | 35.0% |
| ! | GAAGGAGTATGAAGAAGAGA+AGG | + | chr4_1:79900549-79900568 | None:intergenic | 40.0% |
| AATGACCCTCCTCAAAAGAT+GGG | - | chr4_1:79900797-79900816 | Msa0575920:CDS | 40.0% | |
| TCTTCAGTTACTTGAGCAGA+GGG | + | chr4_1:79900827-79900846 | None:intergenic | 40.0% | |
| CTCAAGTAACTGAAGACCAA+AGG | - | chr4_1:79900831-79900850 | Msa0575920:CDS | 40.0% | |
| GCAATTGATGCTATATCCCA+AGG | - | chr4_1:79900881-79900900 | Msa0575920:intron | 40.0% | |
| GCGCTTGATCAAAATTACCT+TGG | + | chr4_1:79900901-79900920 | None:intergenic | 40.0% | |
| GCATAGAGTATGGATGAATG+TGG | + | chr4_1:79900956-79900975 | None:intergenic | 40.0% | |
| TGTGTGGAATGGAACAAGTT+AGG | + | chr4_1:79901071-79901090 | None:intergenic | 40.0% | |
| GCCAAAGGATACAAAATACG+AGG | - | chr4_1:79901148-79901167 | Msa0575920:intron | 40.0% | |
| AGGATTATCAAGGGCTATGT+TGG | - | chr4_1:79901168-79901187 | Msa0575920:intron | 40.0% | |
| GGATTATCAAGGGCTATGTT+GGG | - | chr4_1:79901169-79901188 | Msa0575920:intron | 40.0% | |
| GCCAAATGCCCATAAAATTG+AGG | - | chr4_1:79901358-79901377 | Msa0575920:intron | 40.0% | |
| ! | CCCATAAAATTGAGGAGCAT+AGG | - | chr4_1:79901366-79901385 | Msa0575920:intron | 40.0% |
| TGAACGCTTACGAAAGCAAA+AGG | - | chr4_1:79901397-79901416 | Msa0575920:intron | 40.0% | |
| ATGCGCATCAGTTATGGATA+GGG | + | chr4_1:79901521-79901540 | None:intergenic | 40.0% | |
| TATGCGCATCAGTTATGGAT+AGG | + | chr4_1:79901522-79901541 | None:intergenic | 40.0% | |
| TGATGCGCATACTATACTAC+TGG | - | chr4_1:79901531-79901550 | Msa0575920:intron | 40.0% | |
| GAGACTCTTAACAGAAACTC+AGG | + | chr4_1:79901705-79901724 | None:intergenic | 40.0% | |
| AATAGATGTGTCCTGAACAC+GGG | - | chr4_1:79901896-79901915 | Msa0575920:intron | 40.0% | |
| TCACTTATAAACCCGTGTTC+AGG | + | chr4_1:79901910-79901929 | None:intergenic | 40.0% | |
| CCTTATAAAACCGGCATGAA+AGG | + | chr4_1:79901945-79901964 | None:intergenic | 40.0% | |
| !!! | CCTTTCATGCCGGTTTTATA+AGG | - | chr4_1:79901942-79901961 | Msa0575920:intron | 40.0% |
| GGTAACAATAGATTTAGGGG+TGG | - | chr4_1:79902038-79902057 | Msa0575920:intron | 40.0% | |
| ! | ATTCCTCATGACCTTTTTGC+AGG | - | chr4_1:79902372-79902391 | Msa0575920:intron | 40.0% |
| TATCCTGCAAAAAGGTCATG+AGG | + | chr4_1:79902378-79902397 | None:intergenic | 40.0% | |
| ATGTCTTTCCTTCTGCCTTA+TGG | - | chr4_1:79902433-79902452 | Msa0575920:intron | 40.0% | |
| !! | AAATTTTTAGGCTGTGAGGC+AGG | + | chr4_1:79902622-79902641 | None:intergenic | 40.0% |
| ! | ATGACCGGTGTTAGATATTC+TGG | - | chr4_1:79902743-79902762 | Msa0575920:intron | 40.0% |
| ! | CGGTGTTAGATATTCTGGTT+TGG | - | chr4_1:79902748-79902767 | Msa0575920:intron | 40.0% |
| TCCGCACAGGTTTATTGTAA+AGG | - | chr4_1:79902825-79902844 | Msa0575920:intron | 40.0% | |
| CCCTTTACAATAAACCTGTG+CGG | + | chr4_1:79902829-79902848 | None:intergenic | 40.0% | |
| CCGCACAGGTTTATTGTAAA+GGG | - | chr4_1:79902826-79902845 | Msa0575920:intron | 40.0% | |
| CGAATAAGGATATAGCCAAC+AGG | - | chr4_1:79902858-79902877 | Msa0575920:intron | 40.0% | |
| AAGGATATAGCCAACAGGAT+AGG | - | chr4_1:79902863-79902882 | Msa0575920:intron | 40.0% | |
| !! | TCCCACTCATTTGCTGTATT+AGG | + | chr4_1:79903016-79903035 | None:intergenic | 40.0% |
| TGAACTAAATGCATGGAGCA+AGG | + | chr4_1:79903126-79903145 | None:intergenic | 40.0% | |
| TGTCATGGCTGAAAGATGAA+AGG | - | chr4_1:79903165-79903184 | Msa0575920:CDS | 40.0% | |
| !! | TTCCTTTGTTTGCTGTGTTG+TGG | - | chr4_1:79903207-79903226 | Msa0575920:intron | 40.0% |
| GATAAAACGCAAACCATGCT+TGG | - | chr4_1:79903257-79903276 | Msa0575920:intron | 40.0% | |
| TTCAAATCACTGACCAAGCA+TGG | + | chr4_1:79903273-79903292 | None:intergenic | 40.0% | |
| TAAGTGACCTATTGCATTGG+TGG | - | chr4_1:79903661-79903680 | Msa0575920:CDS | 40.0% | |
| TACTTTACTGCAACATGGTG+TGG | - | chr4_1:79903777-79903796 | Msa0575920:CDS | 40.0% | |
| GTGGTGAAATGTAACGACAA+GGG | + | chr4_1:79903803-79903822 | None:intergenic | 40.0% | |
| AGTGGTGAAATGTAACGACA+AGG | + | chr4_1:79903804-79903823 | None:intergenic | 40.0% | |
| AACCACTCTCTGATACTTCT+CGG | + | chr4_1:79903841-79903860 | None:intergenic | 40.0% | |
| ! | AGTTGATATAGATGAGGCAG+TGG | - | chr4_1:79903869-79903888 | Msa0575920:intron | 40.0% |
| AAAGAGATTGACAGTGTGGT+GGG | - | chr4_1:79903951-79903970 | Msa0575920:CDS | 40.0% | |
| TGTTTACATGCCCATAGTGT+CGG | - | chr4_1:79904081-79904100 | Msa0575920:five_prime_UTR | 40.0% | |
| ! | TCTTGTCTTGTTGACGACAG+TGG | + | chr4_1:79900372-79900391 | None:intergenic | 45.0% |
| GAGTGGAAGCAAACCCTAAA+TGG | - | chr4_1:79900470-79900489 | Msa0575920:three_prime_UTR | 45.0% | |
| TCAACATCAGGTTCCGTCTT+GGG | + | chr4_1:79900710-79900729 | None:intergenic | 45.0% | |
| ATCAACATCAGGTTCCGTCT+TGG | + | chr4_1:79900711-79900730 | None:intergenic | 45.0% | |
| !! | TTTTGAGGAGGGTCATTGTC+AGG | + | chr4_1:79900794-79900813 | None:intergenic | 45.0% |
| CAATGACCCTCCTCAAAAGA+TGG | - | chr4_1:79900796-79900815 | Msa0575920:CDS | 45.0% | |
| !! | GATCACCCATCTTTTGAGGA+GGG | + | chr4_1:79900805-79900824 | None:intergenic | 45.0% |
| GTCTTCAGTTACTTGAGCAG+AGG | + | chr4_1:79900828-79900847 | None:intergenic | 45.0% | |
| ATAGTTGTGCAGCATCCCTT+TGG | + | chr4_1:79900850-79900869 | None:intergenic | 45.0% | |
| AGTGTCAGAATCACGGATAG+CGG | + | chr4_1:79901020-79901039 | None:intergenic | 45.0% | |
| TCAAGGCAGTGTCAGAATCA+CGG | + | chr4_1:79901027-79901046 | None:intergenic | 45.0% | |
| TGATTCTGACACTGCCTTGA+AGG | - | chr4_1:79901027-79901046 | Msa0575920:intron | 45.0% | |
| ATGGAAGCAACGAACCTTCA+AGG | + | chr4_1:79901044-79901063 | None:intergenic | 45.0% | |
| ATCAATCCAGACTCAGCCAA+AGG | - | chr4_1:79901133-79901152 | Msa0575920:intron | 45.0% | |
| TTGTATCCTTTGGCTGAGTC+TGG | + | chr4_1:79901142-79901161 | None:intergenic | 45.0% | |
| CCAAGTTCTATTTGGCCACT+CGG | - | chr4_1:79901814-79901833 | Msa0575920:intron | 45.0% | |
| CAAGTTCTATTTGGCCACTC+GGG | - | chr4_1:79901815-79901834 | Msa0575920:intron | 45.0% | |
| CTGTCCAATCTTGGGTGTTA+GGG | - | chr4_1:79901849-79901868 | Msa0575920:intron | 45.0% | |
| CATACCCTAACACCCAAGAT+TGG | + | chr4_1:79901856-79901875 | None:intergenic | 45.0% | |
| GCAATACTCACCTTTCATGC+CGG | - | chr4_1:79901932-79901951 | Msa0575920:intron | 45.0% | |
| ! | TATTTTGCTGGGCGGCATTT+TGG | - | chr4_1:79902072-79902091 | Msa0575920:intron | 45.0% |
| ! | ATTTTGCTGGGCGGCATTTT+GGG | - | chr4_1:79902073-79902092 | Msa0575920:intron | 45.0% |
| AGTCATCAAAGTTCCGGCAA+TGG | - | chr4_1:79902283-79902302 | Msa0575920:intron | 45.0% | |
| TGCCACAACACAGCAAACAA+AGG | + | chr4_1:79903212-79903231 | None:intergenic | 45.0% | |
| TTAGTGATAGGGTGTAGGGA+AGG | - | chr4_1:79903319-79903338 | Msa0575920:CDS | 45.0% | |
| TCGGCCAAGCTTGTATAAAG+TGG | + | chr4_1:79903822-79903841 | None:intergenic | 45.0% | |
| TGGCAAAGAGATTGACAGTG+TGG | - | chr4_1:79903947-79903966 | Msa0575920:intron | 45.0% | |
| CAAAGAGATTGACAGTGTGG+TGG | - | chr4_1:79903950-79903969 | Msa0575920:CDS | 45.0% | |
| AAGAGATTGACAGTGTGGTG+GGG | - | chr4_1:79903952-79903971 | Msa0575920:CDS | 45.0% | |
| AGGAAGATTGCTCAACATGC+CGG | - | chr4_1:79903996-79904015 | Msa0575920:CDS | 45.0% | |
| ! | TGTCTTGTTGACGACAGTGG+CGG | + | chr4_1:79900369-79900388 | None:intergenic | 50.0% |
| ! | AACGCAGTCTACTGACTGAG+TGG | - | chr4_1:79900453-79900472 | Msa0575920:three_prime_UTR | 50.0% |
| ATCAGGTTCCGTCTTGGGTT+GGG | + | chr4_1:79900705-79900724 | None:intergenic | 50.0% | |
| !! | GGATCACCCATCTTTTGAGG+AGG | + | chr4_1:79900806-79900825 | None:intergenic | 50.0% |
| ! | GAGGGATCACCCATCTTTTG+AGG | + | chr4_1:79900809-79900828 | None:intergenic | 50.0% |
| ! | AGCTCTGGTGGCATAGAGTA+TGG | + | chr4_1:79900966-79900985 | None:intergenic | 50.0% |
| ! | GAATCACGGATAGCGGCATT+TGG | + | chr4_1:79901013-79901032 | None:intergenic | 50.0% |
| TGGCTGAGTCTGGATTGATC+TGG | + | chr4_1:79901132-79901151 | None:intergenic | 50.0% | |
| CCGAGTGGCCAAATAGAACT+TGG | + | chr4_1:79901817-79901836 | None:intergenic | 50.0% | |
| AACACCCAAGATTGGACAGC+TGG | + | chr4_1:79901848-79901867 | None:intergenic | 50.0% | |
| GCTGTCCAATCTTGGGTGTT+AGG | - | chr4_1:79901848-79901867 | Msa0575920:intron | 50.0% | |
| !! | GCGGCATTTTGGGTCTTAGT+TGG | - | chr4_1:79902083-79902102 | Msa0575920:intron | 50.0% |
| TTCCGGCAATGGCAAGTTGT+TGG | - | chr4_1:79902294-79902313 | Msa0575920:intron | 50.0% | |
| AGCCAACAACTTGCCATTGC+CGG | + | chr4_1:79902299-79902318 | None:intergenic | 50.0% | |
| TGAGGCGGTAATAGGATCAG+AGG | + | chr4_1:79902536-79902555 | None:intergenic | 50.0% | |
| GAACAGCATGAGGCGGTAAT+AGG | + | chr4_1:79902544-79902563 | None:intergenic | 50.0% | |
| GTGTCATGAACAGCATGAGG+CGG | + | chr4_1:79902551-79902570 | None:intergenic | 50.0% | |
| TGCGTGTCATGAACAGCATG+AGG | + | chr4_1:79902554-79902573 | None:intergenic | 50.0% | |
| AATAAACCTGTGCGGAGCAC+GGG | + | chr4_1:79902821-79902840 | None:intergenic | 50.0% | |
| CAATAAACCTGTGCGGAGCA+CGG | + | chr4_1:79902822-79902841 | None:intergenic | 50.0% | |
| TGATAGGGTGTAGGGAAGGA+AGG | - | chr4_1:79903323-79903342 | Msa0575920:CDS | 50.0% | |
| AGAGATTGACAGTGTGGTGG+GGG | - | chr4_1:79903953-79903972 | Msa0575920:CDS | 50.0% | |
| ! | TCAGGTTCCGTCTTGGGTTG+GGG | + | chr4_1:79900704-79900723 | None:intergenic | 55.0% |
| CATCAGGTTCCGTCTTGGGT+TGG | + | chr4_1:79900706-79900725 | None:intergenic | 55.0% | |
| CAAGGGCTATGTTGGGACTC+TGG | - | chr4_1:79901176-79901195 | Msa0575920:intron | 55.0% | |
| ACGCTCCAGCTGTCCAATCT+TGG | - | chr4_1:79901840-79901859 | Msa0575920:intron | 55.0% | |
| CGCTCCAGCTGTCCAATCTT+GGG | - | chr4_1:79901841-79901860 | Msa0575920:intron | 55.0% | |
| !! | GGCCGAGAAGTATCAGAGAG+TGG | - | chr4_1:79903836-79903855 | Msa0575920:CDS | 55.0% |
| CATCCCTCCCCAACCCAAGA+CGG | - | chr4_1:79900694-79900713 | Msa0575920:CDS | 60.0% | |
| !! | GTTCCGTCTTGGGTTGGGGA+GGG | + | chr4_1:79900700-79900719 | None:intergenic | 60.0% |
| ATTTGACCCGTGCTCCGCAC+AGG | - | chr4_1:79902812-79902831 | Msa0575920:intron | 60.0% | |
| !! | GGTTCCGTCTTGGGTTGGGG+AGG | + | chr4_1:79900701-79900720 | None:intergenic | 65.0% |
| CAGCTGGAGCGTAACCCGAG+TGG | + | chr4_1:79901832-79901851 | None:intergenic | 65.0% | |
| CAGTGGATGTCGCAGCACGC+TGG | - | chr4_1:79903886-79903905 | Msa0575920:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79900302 | 79904246 | 79900302 | ID=Msa0575920;Name=Msa0575920 |
| chr4_1 | mRNA | 79900302 | 79904246 | 79900302 | ID=Msa0575920-mRNA-1;Parent=Msa0575920;Name=Msa0575920-mRNA-1;_AED=0.16;_eAED=0.16;_QI=187|1|1|1|1|1|6|218|365 |
| chr4_1 | exon | 79900302 | 79900854 | 79900302 | ID=Msa0575920-mRNA-1:exon:28552;Parent=Msa0575920-mRNA-1 |
| chr4_1 | exon | 79902124 | 79902154 | 79902124 | ID=Msa0575920-mRNA-1:exon:28551;Parent=Msa0575920-mRNA-1 |
| chr4_1 | exon | 79903082 | 79903195 | 79903082 | ID=Msa0575920-mRNA-1:exon:28550;Parent=Msa0575920-mRNA-1 |
| chr4_1 | exon | 79903275 | 79903415 | 79903275 | ID=Msa0575920-mRNA-1:exon:28549;Parent=Msa0575920-mRNA-1 |
| chr4_1 | exon | 79903500 | 79903866 | 79903500 | ID=Msa0575920-mRNA-1:exon:28548;Parent=Msa0575920-mRNA-1 |
| chr4_1 | exon | 79903950 | 79904246 | 79903950 | ID=Msa0575920-mRNA-1:exon:28547;Parent=Msa0575920-mRNA-1 |
| chr4_1 | five_prime_UTR | 79904060 | 79904246 | 79904060 | ID=Msa0575920-mRNA-1:five_prime_utr;Parent=Msa0575920-mRNA-1 |
| chr4_1 | CDS | 79903950 | 79904059 | 79903950 | ID=Msa0575920-mRNA-1:cds;Parent=Msa0575920-mRNA-1 |
| chr4_1 | CDS | 79903500 | 79903866 | 79903500 | ID=Msa0575920-mRNA-1:cds;Parent=Msa0575920-mRNA-1 |
| chr4_1 | CDS | 79903275 | 79903415 | 79903275 | ID=Msa0575920-mRNA-1:cds;Parent=Msa0575920-mRNA-1 |
| chr4_1 | CDS | 79903082 | 79903195 | 79903082 | ID=Msa0575920-mRNA-1:cds;Parent=Msa0575920-mRNA-1 |
| chr4_1 | CDS | 79902124 | 79902154 | 79902124 | ID=Msa0575920-mRNA-1:cds;Parent=Msa0575920-mRNA-1 |
| chr4_1 | CDS | 79900520 | 79900854 | 79900520 | ID=Msa0575920-mRNA-1:cds;Parent=Msa0575920-mRNA-1 |
| chr4_1 | three_prime_UTR | 79900302 | 79900519 | 79900302 | ID=Msa0575920-mRNA-1:three_prime_utr;Parent=Msa0575920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
