AlfalfaGEDB | Msa0159440

M. sativa cultivar zhongmu-4 / Msa0159440

KEGG: K03094
GO: -
PFAM: PF03931.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159440	sp\|Q9FHW7\|SKP1B_ARATH	77.059	170	23	1	3	156	2	171	3.01e-84	247

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159440	Q155U2	98.701	154	2	0	3	156	2	155	1.82e-107	312

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0159440	0.803332	3.666753e-49	-8.615850e-47
Msa0020390	Msa0159440	0.824672	7.110322e-54	-8.615850e-47
Msa0046740	Msa0159440	0.806794	6.917891e-50	-8.615850e-47
Msa0068000	Msa0159440	0.872949	2.146733e-67	-8.615850e-47
Msa0068020	Msa0159440	0.851325	9.553007e-61	-8.615850e-47
Msa0093010	Msa0159440	0.817000	4.137976e-52	-8.615850e-47
Msa0113240	Msa0159440	0.826117	3.234889e-54	-8.615850e-47
Msa0115870	Msa0159440	0.841531	4.490174e-58	-8.615850e-47
Msa0115990	Msa0159440	0.807930	3.972958e-50	-8.615850e-47
Msa0159420	Msa0159440	0.838094	3.526157e-57	-8.615850e-47
Msa0159440	Msa0177960	0.839914	1.191286e-57	-8.615850e-47
Msa0159440	Msa0190590	0.804191	2.431871e-49	-8.615850e-47
Msa0159440	Msa0191070	0.808351	3.232350e-50	-8.615850e-47
Msa0159440	Msa0217670	0.829409	5.231535e-55	-8.615850e-47
Msa0159440	Msa0231790	0.802699	4.956917e-49	-8.615850e-47
Msa0159440	Msa0245430	0.802416	5.667892e-49	-8.615850e-47
Msa0159440	Msa0245580	0.816410	5.609729e-52	-8.615850e-47
Msa0159440	Msa0257490	0.825322	4.993006e-54	-8.615850e-47
Msa0159440	Msa0269470	0.811797	5.849755e-51	-8.615850e-47
Msa0159440	Msa0281530	0.821881	3.188841e-53	-8.615850e-47
Msa0159440	Msa0296790	0.812957	3.264286e-51	-8.615850e-47
Msa0159440	Msa0317910	0.802510	5.422714e-49	-8.615850e-47
Msa0159440	Msa0348830	0.807714	4.417400e-50	-8.615850e-47
Msa0159440	Msa0358770	0.837200	5.980435e-57	-8.615850e-47
Msa0159440	Msa0385500	0.838687	2.479301e-57	-8.615850e-47
Msa0159440	Msa0426580	0.814947	1.188562e-51	-8.615850e-47
Msa0159440	Msa0521050	0.813758	2.176445e-51	-8.615850e-47
Msa0159440	Msa0544540	0.802380	5.766944e-49	-8.615850e-47
Msa0159440	Msa0580280	0.809160	2.171087e-50	-8.615850e-47
Msa0159440	Msa0581110	0.805355	1.389634e-49	-8.615850e-47
Msa0159440	Msa0588260	0.801821	7.515313e-49	-8.615850e-47
Msa0159440	Msa0610550	0.820253	7.563505e-53	-8.615850e-47
Msa0159440	Msa0642970	0.803966	2.709157e-49	-8.615850e-47
Msa0159440	Msa0661300	0.802335	5.889822e-49	-8.615850e-47
Msa0159440	Msa0665280	0.817782	2.758621e-52	-8.615850e-47
Msa0159440	Msa0693210	0.802818	4.683294e-49	-8.615850e-47
Msa0159440	Msa0708000	-0.809663	1.692661e-50	-8.615850e-47
Msa0159440	Msa0752700	0.800323	1.520931e-48	-8.615850e-47
Msa0159440	Msa0800370	0.812268	4.618168e-51	-8.615850e-47
Msa0159440	Msa0808800	0.805719	1.165593e-49	-8.615850e-47
Msa0159440	Msa0838370	0.827900	1.211541e-54	-8.615850e-47
Msa0159440	Msa0858440	0.813170	2.931621e-51	-8.615850e-47
Msa0159440	Msa1024710	0.803687	3.094900e-49	-8.615850e-47
Msa0159440	Msa1039900	0.804462	2.135675e-49	-8.615850e-47
Msa0159440	Msa1109780	-0.819849	9.359549e-53	-8.615850e-47
Msa0159440	Msa1126830	0.803926	2.760255e-49	-8.615850e-47
Msa0159440	Msa1128280	0.803840	2.877432e-49	-8.615850e-47
Msa0159440	Msa1165270	0.807978	3.880893e-50	-8.615850e-47
Msa0159440	Msa1165780	0.801172	1.020654e-48	-8.615850e-47
Msa0159440	Msa1175350	0.815410	9.377081e-52	-8.615850e-47
Msa0159440	Msa1267830	0.812168	4.854901e-51	-8.615850e-47
Msa0159440	Msa1269790	0.812619	3.869828e-51	-8.615850e-47
Msa0159440	Msa1336560	0.813449	2.545055e-51	-8.615850e-47
Msa0159440	Msa1413260	0.801550	8.540880e-49	-8.615850e-47
Msa0159440	Msa1420430	0.826956	2.041072e-54	-8.615850e-47
Msa0159440	Msa1445370	0.827292	1.695801e-54	-8.615850e-47
Msa0159440	Msa1456050	0.803979	2.691251e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159440	MtrunA17_Chr5g0405891	98.701	154	2	0	3	156	2	155	3.51e-111	312
Msa0159440	MtrunA17_Chr5g0405871	95.455	154	7	0	3	156	2	155	3.70e-100	284
Msa0159440	MtrunA17_Chr7g0221641	86.538	156	21	0	1	156	1	156	1.93e-92	265
Msa0159440	MtrunA17_Chr7g0259261	85.897	156	22	0	1	156	1	156	1.70e-91	262
Msa0159440	MtrunA17_Chr7g0259271	85.897	156	22	0	1	156	1	156	1.77e-91	262
Msa0159440	MtrunA17_Chr7g0221621	82.692	156	27	0	1	156	1	156	1.59e-85	247
Msa0159440	MtrunA17_Chr4g0014211	78.205	156	33	1	2	156	8	163	3.89e-85	246
Msa0159440	MtrunA17_Chr3g0139751	75.949	158	36	1	1	156	1	158	4.77e-85	246
Msa0159440	MtrunA17_Chr7g0259231	74.522	157	38	1	2	156	3	159	1.61e-83	242
Msa0159440	MtrunA17_Chr4g0014231	73.248	157	41	1	1	156	19	175	2.17e-83	243
Msa0159440	MtrunA17_Chr7g0259371	72.785	158	41	2	1	156	1	158	1.49e-79	232
Msa0159440	MtrunA17_Chr8g0361911	73.248	157	41	1	1	156	1	157	4.70e-79	231
Msa0159440	MtrunA17_Chr5g0438791	72.727	154	41	1	3	155	2	155	3.06e-78	229
Msa0159440	MtrunA17_Chr8g0362291	70.323	155	45	1	3	156	2	156	7.68e-77	225
Msa0159440	MtrunA17_Chr4g0014271	68.153	157	42	3	2	156	3	153	1.04e-70	209
Msa0159440	MtrunA17_Chr4g0014241	71.613	155	37	2	3	156	2	150	6.79e-70	207
Msa0159440	MtrunA17_Chr4g0014261	66.026	156	46	2	2	156	3	152	2.56e-69	206
Msa0159440	MtrunA17_Chr7g0259381	67.089	158	36	3	1	156	1	144	1.40e-68	204
Msa0159440	MtrunA17_Chr4g0015171	59.740	154	62	0	3	156	7	160	1.30e-67	202
Msa0159440	MtrunA17_Chr4g0015151	59.740	154	62	0	3	156	7	160	1.71e-64	194
Msa0159440	MtrunA17_Chr4g0007651	54.359	195	46	3	5	156	26	220	4.19e-63	193
Msa0159440	MtrunA17_Chr4g0009571	58.065	155	62	1	2	156	4	155	3.21e-58	178
Msa0159440	MtrunA17_Chr1g0202631	83.333	96	14	1	63	156	201	296	8.54e-52	166
Msa0159440	MtrunA17_Chr8g0381421	69.106	123	21	1	34	156	1	106	1.13e-49	155
Msa0159440	MtrunA17_Chr7g0214701	53.901	141	56	2	2	142	4	135	2.51e-43	140
Msa0159440	MtrunA17_Chr7g0259441	53.205	156	31	4	1	114	1	156	3.45e-41	135
Msa0159440	MtrunA17_Chr7g0259421	47.093	172	38	4	1	119	1	172	9.26e-40	133
Msa0159440	MtrunA17_Chr4g0014221	63.000	100	23	2	57	156	2	87	3.60e-36	120
Msa0159440	MtrunA17_Chr4g0007851	62.887	97	34	1	62	156	54	150	7.00e-36	121
Msa0159440	MtrunA17_Chr5g0436881	69.512	82	24	1	3	83	32	113	1.20e-35	119
Msa0159440	MtrunA17_Chr4g0067031	48.299	147	69	2	2	146	235	376	8.91e-35	124
Msa0159440	MtrunA17_Chr4g0015161	57.426	101	35	1	33	133	8	100	4.76e-33	112
Msa0159440	MtrunA17_Chr1g0211011	39.355	155	78	2	8	146	1	155	7.63e-33	114
Msa0159440	MtrunA17_Chr4g0074721	57.983	119	33	4	3	119	2	105	5.42e-32	110
Msa0159440	MtrunA17_Chr7g0259391	85.000	60	8	1	1	59	1	60	2.74e-28	99.4
Msa0159440	MtrunA17_Chr2g0310471	39.873	158	83	5	1	155	30	178	2.57e-26	98.6
Msa0159440	MtrunA17_Chr7g0259411	56.522	92	27	1	1	92	1	79	5.84e-25	95.1
Msa0159440	MtrunA17_Chr7g0259411	51.685	89	39	3	48	135	102	187	6.67e-20	82.0
Msa0159440	MtrunA17_Chr5g0447291	37.107	159	79	4	1	155	1	142	5.21e-23	88.6
Msa0159440	MtrunA17_Chr1g0167301	34.615	156	64	4	8	146	1	135	1.79e-22	90.5
Msa0159440	MtrunA17_Chr2g0285701	34.000	150	86	3	8	156	3	140	9.14e-22	85.5
Msa0159440	MtrunA17_Chr1g0210991	34.810	158	65	4	8	148	1	137	2.81e-21	86.7
Msa0159440	MtrunA17_Chr6g0470511	36.806	144	81	5	8	146	17	155	4.11e-19	82.4
Msa0159440	MtrunA17_Chr4g0071681	77.083	48	10	1	94	140	2	49	4.14e-19	75.9
Msa0159440	MtrunA17_Chr2g0310571	37.333	150	67	5	8	155	20	144	9.06e-19	78.6
Msa0159440	MtrunA17_Chr8g0335711	34.286	140	80	4	10	143	13	146	2.28e-18	79.7
Msa0159440	MtrunA17_Chr4g0014291	61.818	55	20	1	98	151	1	55	3.09e-18	73.6
Msa0159440	MtrunA17_Chr7g0247861	34.722	144	84	4	8	146	18	156	8.65e-18	78.6
Msa0159440	MtrunA17_Chr8g0392111	70.690	58	13	2	1	57	1	55	9.46e-18	72.8
Msa0159440	MtrunA17_Chr8g0335731	32.414	145	85	4	10	147	13	151	1.21e-17	76.3
Msa0159440	MtrunA17_Chr2g0330971	32.667	150	92	4	1	146	4	148	4.87e-17	76.3
Msa0159440	MtrunA17_Chr8g0335691	32.877	146	87	4	8	147	11	151	8.11e-17	75.5
Msa0159440	MtrunA17_Chr2g0330981	33.793	145	80	5	10	146	13	149	8.61e-17	75.5
Msa0159440	MtrunA17_Chr4g0074671	39.286	112	58	2	5	112	9	114	6.52e-16	69.7
Msa0159440	MtrunA17_Chr8g0361921	56.667	60	25	1	96	154	19	78	9.84e-16	68.2
Msa0159440	MtrunA17_Chr1g0211001	30.723	166	63	5	8	128	1	159	1.67e-15	72.0
Msa0159440	MtrunA17_Chr7g0228441	33.333	141	83	6	1	135	1	136	4.08e-15	70.1
Msa0159440	MtrunA17_Chr8g0348821	29.932	147	93	3	8	149	18	159	2.07e-14	69.3
Msa0159440	MtrunA17_Chr3g0103481	33.684	95	56	2	53	146	1	89	4.71e-13	62.0
Msa0159440	MtrunA17_Chr4g0014281	59.259	54	22	0	94	147	1	54	6.65e-13	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159440	AT5G42190.1	77.059	170	23	1	3	156	2	171	3.06e-85	247
Msa0159440	AT1G75950.1	78.616	159	28	1	4	156	2	160	5.18e-84	244
Msa0159440	AT1G20140.1	72.393	163	38	2	1	156	1	163	6.12e-83	241
Msa0159440	AT2G25700.1	68.712	163	44	2	1	156	1	163	2.48e-78	229
Msa0159440	AT4G34210.1	69.481	154	43	2	4	156	2	152	8.68e-76	223
Msa0159440	AT4G34470.1	68.831	154	44	2	4	156	2	152	4.59e-75	221
Msa0159440	AT3G21860.1	66.452	155	46	3	4	156	2	152	2.58e-67	201
Msa0159440	AT3G60010.1	64.331	157	47	3	5	156	2	154	1.14e-66	200
Msa0159440	AT3G21850.1	63.871	155	51	3	4	156	2	153	3.35e-66	199
Msa0159440	AT2G03170.1	62.338	154	51	2	4	156	2	149	3.21e-63	191
Msa0159440	AT2G03190.1	55.422	166	61	3	4	156	2	167	6.24e-59	181
Msa0159440	AT3G60020.1	56.329	158	57	3	5	156	2	153	2.75e-56	174
Msa0159440	AT2G03160.1	48.677	189	61	3	4	156	2	190	1.55e-55	173
Msa0159440	AT3G21830.1	55.844	154	64	2	4	156	2	152	4.98e-55	170
Msa0159440	AT2G20160.1	54.902	153	63	2	4	155	2	149	2.79e-53	166
Msa0159440	AT3G25650.1	57.229	166	58	5	4	156	2	167	6.01e-53	166
Msa0159440	AT1G10230.1	56.774	155	64	2	4	155	2	156	6.86e-52	162
Msa0159440	AT3G21840.1	57.500	120	45	3	4	121	2	117	6.82e-37	123
Msa0159440	AT3G53060.1	65.116	86	23	3	29	113	1	80	3.26e-31	107
Msa0159440	AT3G61415.2	33.333	144	86	4	8	146	18	156	3.19e-16	74.7
Msa0159440	AT3G61415.1	33.333	144	86	4	8	146	18	156	3.49e-16	74.3
Msa0159440	AT2G45950.3	31.944	144	88	4	8	146	18	156	5.04e-16	73.9
Msa0159440	AT2G45950.1	31.944	144	88	4	8	146	18	156	5.04e-16	73.9
Msa0159440	AT2G45950.4	31.944	144	88	4	8	146	18	156	5.04e-16	73.9
Msa0159440	AT2G45950.5	31.944	144	88	4	8	146	18	156	5.18e-16	73.9
Msa0159440	AT2G45950.2	31.944	144	88	4	8	146	18	156	5.18e-16	73.9

Find 50 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATAGGGTTTCGTTGAAAAT+TGG	0.203682	1_4:-29912187	None:intergenic
GAACTCCAATGTTTATCTTT+TGG	0.249043	1_4:+29913555	Msa0159440:three_prime_UTR
AAGGTCTTGCGAATCTCTTC+AGG	0.314015	1_4:-29913381	None:intergenic
CGTAGTAATCGTGATGTGAT+AGG	0.351263	1_4:-29912204	None:intergenic
GGTCGATGAAGCGGTTGCTT+TGG	0.364221	1_4:+29912283	Msa0159440:CDS
ATTGGCTGATGCGTTTAATA+TGG	0.369509	1_4:+29913622	Msa0159440:three_prime_UTR
GAAATCATTCTTAATGTTGA+AGG	0.372420	1_4:-29913400	None:intergenic
CAACGTTACCAGCAAGATCT+TGG	0.386921	1_4:+29912367	Msa0159440:CDS
CGAGGATGAGCTTAAGTCTT+GGG	0.409245	1_4:+29912451	Msa0159440:CDS
TGATCATGTCTGCCACAGTC+TGG	0.431834	1_4:-29913347	None:intergenic
CACCTTCGCCAAGATCTTGC+TGG	0.436666	1_4:-29912375	None:intergenic
CGAGTTCGTGAAGGTTGATC+AGG	0.440775	1_4:+29912478	Msa0159440:CDS
GACTTAAGCTCATCCTCGTT+AGG	0.455978	1_4:-29912446	None:intergenic
TGATTTCTCTCCAGAGGAAG+AGG	0.475889	1_4:+29913416	Msa0159440:CDS
AAGATCTTGCTGGTAACGTT+GGG	0.477857	1_4:-29912365	None:intergenic
TTTGAATATCAAGAACCTGC+TGG	0.483519	1_4:+29913314	Msa0159440:CDS
CGAACTTCCTCCTCTTCCTC+TGG	0.494352	1_4:-29913426	None:intergenic
AAGTAACAGTTGATTATGAT+TGG	0.501129	1_4:+29913604	Msa0159440:three_prime_UTR
TGCTGGTAACGTTGGGAAGA+GGG	0.508109	1_4:-29912358	None:intergenic
TTGCTGGTAACGTTGGGAAG+AGG	0.523250	1_4:-29912359	None:intergenic
CAAGATCTTGCTGGTAACGT+TGG	0.530853	1_4:-29912366	None:intergenic
GGAAGAGGAGGAAGTTCGTA+GGG	0.537389	1_4:+29913431	Msa0159440:CDS
ATAATCATTCAAATGCCCAT+TGG	0.538622	1_4:-29913458	None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG	0.544399	1_4:+29912450	Msa0159440:CDS
ACTTGTTAGCATCTAAGTCA+AGG	0.545679	1_4:+29913489	Msa0159440:three_prime_UTR
AGGAAGAGGAGGAAGTTCGT+AGG	0.548370	1_4:+29913430	Msa0159440:CDS
GACTGTGGCAGACATGATCA+AGG	0.557841	1_4:+29913350	Msa0159440:CDS
ATAAACCAAAAGATAAACAT+TGG	0.560309	1_4:-29913560	None:intergenic
AGTTCGTAGGGAAAACCAAT+GGG	0.562143	1_4:+29913443	Msa0159440:CDS
AAGTTCGTAGGGAAAACCAA+TGG	0.564773	1_4:+29913442	Msa0159440:CDS
GTAGTAATCGTGATGTGATA+GGG	0.567525	1_4:-29912203	None:intergenic
CTGATCAACCTTCACGAACT+CGG	0.567841	1_4:-29912477	None:intergenic
GATGCGTTTAATATGGTACA+AGG	0.588127	1_4:+29913629	Msa0159440:three_prime_UTR
TTGGGATTCCGAGTTCGTGA+AGG	0.596084	1_4:+29912469	Msa0159440:CDS
TAAGAATGATTTCTCTCCAG+AGG	0.603350	1_4:+29913410	Msa0159440:CDS
GAAGATGATTGCGCTGACAG+TGG	0.607194	1_4:+29912332	Msa0159440:CDS
GACCTTCGAGGTCGATGAAG+CGG	0.610768	1_4:+29912274	Msa0159440:CDS
TTCCGACGGTGAGACCTTCG+AGG	0.613590	1_4:+29912262	Msa0159440:CDS
TTTCTCTCCAGAGGAAGAGG+AGG	0.615178	1_4:+29913419	Msa0159440:CDS
TCTGGCATGTAAGATCCAGC+AGG	0.615709	1_4:-29913329	None:intergenic
ATCACTCTGAAGAGTTCCGA+CGG	0.622850	1_4:+29912248	Msa0159440:CDS
AACCGCTTCATCGACCTCGA+AGG	0.623664	1_4:-29912276	None:intergenic
ACTGTGGCAGACATGATCAA+GGG	0.624146	1_4:+29913351	Msa0159440:CDS
TACCAGCAAGATCTTGGCGA+AGG	0.627734	1_4:+29912373	Msa0159440:CDS
CTGTGGCAGACATGATCAAG+GGG	0.638852	1_4:+29913352	Msa0159440:CDS
GACCTCGAAGGTCTCACCGT+CGG	0.662584	1_4:-29912264	None:intergenic
GGATCTTACATGCCAGACTG+TGG	0.675179	1_4:+29913335	Msa0159440:CDS
TGCTGAAGACAAACCTAACG+AGG	0.677963	1_4:+29912433	Msa0159440:CDS
AGGCATAACATAAAACCACA+TGG	0.707831	1_4:-29913517	None:intergenic
TAAGTCAAGGATCTACCATG+TGG	0.725317	1_4:+29913502	Msa0159440:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTAATTCGTTTATTTGATT+TGG	+	chr1_4:29912542-29912561	Msa0159440:intron	15.0%
!!!	TTAATTCGTTTATTTGATTT+GGG	+	chr1_4:29912543-29912562	Msa0159440:intron	15.0%
!!	TTTAATTCGTTTATTTGATT+TGG	+	chr1_4:29912542-29912561	Msa0159440:intron	15.0%
!!!	TTAATTCGTTTATTTGATTT+GGG	+	chr1_4:29912543-29912562	Msa0159440:intron	15.0%
!!!	ATTTCAATTTGTCTTTTGTT+TGG	+	chr1_4:29912662-29912681	Msa0159440:intron	20.0%
!!!	TTTCAATTTGTCTTTTGTTT+GGG	+	chr1_4:29912663-29912682	Msa0159440:intron	20.0%
!!!	TTGTAGGATATTGTTATTTA+TGG	+	chr1_4:29912841-29912860	Msa0159440:intron	20.0%
!!!	ATGTTTATGTTATGTTTTGT+TGG	+	chr1_4:29912993-29913012	Msa0159440:intron	20.0%
!!!	AGCAAATTTGCATTTTTTAA+TGG	-	chr1_4:29913250-29913269	None:intergenic	20.0%
!!!	TATCATATTTTTTCCTTTGT+AGG	+	chr1_4:29913281-29913300	Msa0159440:intron	20.0%
!!!	AGTTCTTTGATGATTAAAAA+AGG	-	chr1_4:29913540-29913559	None:intergenic	20.0%
!!	ATAAACCAAAAGATAAACAT+TGG	-	chr1_4:29913563-29913582	None:intergenic	20.0%
!!!	ATTTCAATTTGTCTTTTGTT+TGG	+	chr1_4:29912662-29912681	Msa0159440:intron	20.0%
!!!	TTTCAATTTGTCTTTTGTTT+GGG	+	chr1_4:29912663-29912682	Msa0159440:intron	20.0%
!!!	TTGTAGGATATTGTTATTTA+TGG	+	chr1_4:29912841-29912860	Msa0159440:intron	20.0%
!!!	ATGTTTATGTTATGTTTTGT+TGG	+	chr1_4:29912993-29913012	Msa0159440:intron	20.0%
!!!	AGCAAATTTGCATTTTTTAA+TGG	-	chr1_4:29913250-29913269	None:intergenic	20.0%
!!!	TATCATATTTTTTCCTTTGT+AGG	+	chr1_4:29913281-29913300	Msa0159440:intron	20.0%
!!!	AGTTCTTTGATGATTAAAAA+AGG	-	chr1_4:29913540-29913559	None:intergenic	20.0%
!!	ATAAACCAAAAGATAAACAT+TGG	-	chr1_4:29913563-29913582	None:intergenic	20.0%
!	TTTCCGATTCAGAAAAAATT+AGG	+	chr1_4:29912131-29912150	Msa0159440:five_prime_UTR	25.0%
!	TTCCGATTCAGAAAAAATTA+GGG	+	chr1_4:29912132-29912151	Msa0159440:five_prime_UTR	25.0%
!!!	AACCCTAATTTTTTCTGAAT+CGG	-	chr1_4:29912137-29912156	None:intergenic	25.0%
!!!	ATCTTGGTAAGTTTGTTTTA+GGG	+	chr1_4:29912518-29912537	Msa0159440:intron	25.0%
!!!	ATTTGATTTGGGTTTTGTTT+TGG	+	chr1_4:29912554-29912573	Msa0159440:intron	25.0%
!!!	TCCTAAATTAGGGTTTTTTT+TGG	+	chr1_4:29912589-29912608	Msa0159440:intron	25.0%
!	ACCAAAAAAAACCCTAATTT+AGG	-	chr1_4:29912593-29912612	None:intergenic	25.0%
!!!	ATTAGGGTTTTTTTTGGTTT+TGG	+	chr1_4:29912595-29912614	Msa0159440:intron	25.0%
!!!	TTAGGGTTTTTTTTGGTTTT+GGG	+	chr1_4:29912596-29912615	Msa0159440:intron	25.0%
!!!	TTTGTTTGGGTTGAATTTAA+TGG	+	chr1_4:29912676-29912695	Msa0159440:intron	25.0%
!!!	TTGTTTGGGTTGAATTTAAT+GGG	+	chr1_4:29912677-29912696	Msa0159440:intron	25.0%
!!	AGCGATTTTATGTTTTCATT+TGG	+	chr1_4:29912907-29912926	Msa0159440:intron	25.0%
!!	TAATAATCCTATGTTTCTGA+TGG	+	chr1_4:29913204-29913223	Msa0159440:intron	25.0%
!	GAAATCATTCTTAATGTTGA+AGG	-	chr1_4:29913403-29913422	None:intergenic	25.0%
!!!	TATCTTTTGGTTTATTTCTG+TGG	+	chr1_4:29913568-29913587	Msa0159440:three_prime_UTR	25.0%
!	AAGTAACAGTTGATTATGAT+TGG	+	chr1_4:29913604-29913623	Msa0159440:three_prime_UTR	25.0%
!	TTTCCGATTCAGAAAAAATT+AGG	+	chr1_4:29912131-29912150	Msa0159440:five_prime_UTR	25.0%
!	TTCCGATTCAGAAAAAATTA+GGG	+	chr1_4:29912132-29912151	Msa0159440:five_prime_UTR	25.0%
!!!	AACCCTAATTTTTTCTGAAT+CGG	-	chr1_4:29912137-29912156	None:intergenic	25.0%
!!!	ATCTTGGTAAGTTTGTTTTA+GGG	+	chr1_4:29912518-29912537	Msa0159440:intron	25.0%
!!!	ATTTGATTTGGGTTTTGTTT+TGG	+	chr1_4:29912554-29912573	Msa0159440:intron	25.0%
!!!	TCCTAAATTAGGGTTTTTTT+TGG	+	chr1_4:29912589-29912608	Msa0159440:intron	25.0%
!	ACCAAAAAAAACCCTAATTT+AGG	-	chr1_4:29912593-29912612	None:intergenic	25.0%
!!!	ATTAGGGTTTTTTTTGGTTT+TGG	+	chr1_4:29912595-29912614	Msa0159440:intron	25.0%
!!!	TTAGGGTTTTTTTTGGTTTT+GGG	+	chr1_4:29912596-29912615	Msa0159440:intron	25.0%
!!!	TTTGTTTGGGTTGAATTTAA+TGG	+	chr1_4:29912676-29912695	Msa0159440:intron	25.0%
!!!	TTGTTTGGGTTGAATTTAAT+GGG	+	chr1_4:29912677-29912696	Msa0159440:intron	25.0%
!!	AGCGATTTTATGTTTTCATT+TGG	+	chr1_4:29912907-29912926	Msa0159440:intron	25.0%
!!	TAATAATCCTATGTTTCTGA+TGG	+	chr1_4:29913204-29913223	Msa0159440:intron	25.0%
!	GAAATCATTCTTAATGTTGA+AGG	-	chr1_4:29913403-29913422	None:intergenic	25.0%
!!!	TATCTTTTGGTTTATTTCTG+TGG	+	chr1_4:29913568-29913587	Msa0159440:three_prime_UTR	25.0%
!	AAGTAACAGTTGATTATGAT+TGG	+	chr1_4:29913604-29913623	Msa0159440:three_prime_UTR	25.0%
!!	CATCTTGGTAAGTTTGTTTT+AGG	+	chr1_4:29912517-29912536	Msa0159440:intron	30.0%
!!	TCTTTTTGTTCTTGAGTTGT+AGG	+	chr1_4:29912825-29912844	Msa0159440:intron	30.0%
	ATCATTTGGTTATCAGTAAG+TGG	-	chr1_4:29913130-29913149	None:intergenic	30.0%
	TGATAACCAAATGATGAACA+TGG	+	chr1_4:29913135-29913154	Msa0159440:intron	30.0%
!	TTTAATGGCAATGAGTTGAA+GGG	-	chr1_4:29913235-29913254	None:intergenic	30.0%
!!	TTTTAATGGCAATGAGTTGA+AGG	-	chr1_4:29913236-29913255	None:intergenic	30.0%
	AAATAATTAGCAGCCTACAA+AGG	-	chr1_4:29913297-29913316	None:intergenic	30.0%
	ATAATCATTCAAATGCCCAT+TGG	-	chr1_4:29913461-29913480	None:intergenic	30.0%
!	GAACTCCAATGTTTATCTTT+TGG	+	chr1_4:29913555-29913574	Msa0159440:three_prime_UTR	30.0%
!!	CATCTTGGTAAGTTTGTTTT+AGG	+	chr1_4:29912517-29912536	Msa0159440:intron	30.0%
!!	TCTTTTTGTTCTTGAGTTGT+AGG	+	chr1_4:29912825-29912844	Msa0159440:intron	30.0%
	ATCATTTGGTTATCAGTAAG+TGG	-	chr1_4:29913130-29913149	None:intergenic	30.0%
	TGATAACCAAATGATGAACA+TGG	+	chr1_4:29913135-29913154	Msa0159440:intron	30.0%
!	TTTAATGGCAATGAGTTGAA+GGG	-	chr1_4:29913235-29913254	None:intergenic	30.0%
!!	TTTTAATGGCAATGAGTTGA+AGG	-	chr1_4:29913236-29913255	None:intergenic	30.0%
	AAATAATTAGCAGCCTACAA+AGG	-	chr1_4:29913297-29913316	None:intergenic	30.0%
	ATAATCATTCAAATGCCCAT+TGG	-	chr1_4:29913461-29913480	None:intergenic	30.0%
!	GAACTCCAATGTTTATCTTT+TGG	+	chr1_4:29913555-29913574	Msa0159440:three_prime_UTR	30.0%
!!!	AGGGTTTTGATTTGTCGAAA+AGG	+	chr1_4:29912151-29912170	Msa0159440:five_prime_UTR	35.0%
!!!	GGGTTTTGATTTGTCGAAAA+GGG	+	chr1_4:29912152-29912171	Msa0159440:five_prime_UTR	35.0%
!!!	GGTTTTGATTTGTCGAAAAG+GGG	+	chr1_4:29912153-29912172	Msa0159440:five_prime_UTR	35.0%
	GATAGGGTTTCGTTGAAAAT+TGG	-	chr1_4:29912190-29912209	None:intergenic	35.0%
	GTAGTAATCGTGATGTGATA+GGG	-	chr1_4:29912206-29912225	None:intergenic	35.0%
!!	TACGCTTTTTGATCTCATCT+TGG	+	chr1_4:29912502-29912521	Msa0159440:CDS	35.0%
!!!	GGTTTTGTTTTGGAATGCTT+GGG	+	chr1_4:29912564-29912583	Msa0159440:intron	35.0%
!!!	GTTTTGTTTTGGAATGCTTG+GGG	+	chr1_4:29912565-29912584	Msa0159440:intron	35.0%
!!!	TTTTGTTTTGGAATGCTTGG+GGG	+	chr1_4:29912566-29912585	Msa0159440:intron	35.0%
	AATAGCATATAGCCCAATAG+AGG	-	chr1_4:29912767-29912786	None:intergenic	35.0%
	ATGCTATTGTGAAATCCGAA+AGG	+	chr1_4:29912875-29912894	Msa0159440:intron	35.0%
	TGCTATTGTGAAATCCGAAA+GGG	+	chr1_4:29912876-29912895	Msa0159440:intron	35.0%
	AGAGAATTTGACATAGTGAG+TGG	-	chr1_4:29912966-29912985	None:intergenic	35.0%
	ATTCGTCGTGTTTGTTTGTT+TGG	+	chr1_4:29913040-29913059	Msa0159440:intron	35.0%
	GACAATCCATGTTCATCATT+TGG	-	chr1_4:29913144-29913163	None:intergenic	35.0%
	TTTGAATATCAAGAACCTGC+TGG	+	chr1_4:29913314-29913333	Msa0159440:CDS	35.0%
	TAAGAATGATTTCTCTCCAG+AGG	+	chr1_4:29913410-29913429	Msa0159440:CDS	35.0%
!	ACTTGTTAGCATCTAAGTCA+AGG	+	chr1_4:29913489-29913508	Msa0159440:three_prime_UTR	35.0%
	AGGCATAACATAAAACCACA+TGG	-	chr1_4:29913520-29913539	None:intergenic	35.0%
	ATTGGCTGATGCGTTTAATA+TGG	+	chr1_4:29913622-29913641	Msa0159440:three_prime_UTR	35.0%
	GATGCGTTTAATATGGTACA+AGG	+	chr1_4:29913629-29913648	Msa0159440:three_prime_UTR	35.0%
!!!	AGGGTTTTGATTTGTCGAAA+AGG	+	chr1_4:29912151-29912170	Msa0159440:five_prime_UTR	35.0%
!!!	GGGTTTTGATTTGTCGAAAA+GGG	+	chr1_4:29912152-29912171	Msa0159440:five_prime_UTR	35.0%
!!!	GGTTTTGATTTGTCGAAAAG+GGG	+	chr1_4:29912153-29912172	Msa0159440:five_prime_UTR	35.0%
	GATAGGGTTTCGTTGAAAAT+TGG	-	chr1_4:29912190-29912209	None:intergenic	35.0%
	GTAGTAATCGTGATGTGATA+GGG	-	chr1_4:29912206-29912225	None:intergenic	35.0%
!!	TACGCTTTTTGATCTCATCT+TGG	+	chr1_4:29912502-29912521	Msa0159440:CDS	35.0%
!!!	GGTTTTGTTTTGGAATGCTT+GGG	+	chr1_4:29912564-29912583	Msa0159440:intron	35.0%
!!!	GTTTTGTTTTGGAATGCTTG+GGG	+	chr1_4:29912565-29912584	Msa0159440:intron	35.0%
!!!	TTTTGTTTTGGAATGCTTGG+GGG	+	chr1_4:29912566-29912585	Msa0159440:intron	35.0%
	AATAGCATATAGCCCAATAG+AGG	-	chr1_4:29912767-29912786	None:intergenic	35.0%
	ATGCTATTGTGAAATCCGAA+AGG	+	chr1_4:29912875-29912894	Msa0159440:intron	35.0%
	TGCTATTGTGAAATCCGAAA+GGG	+	chr1_4:29912876-29912895	Msa0159440:intron	35.0%
	AGAGAATTTGACATAGTGAG+TGG	-	chr1_4:29912966-29912985	None:intergenic	35.0%
	ATTCGTCGTGTTTGTTTGTT+TGG	+	chr1_4:29913040-29913059	Msa0159440:intron	35.0%
	GACAATCCATGTTCATCATT+TGG	-	chr1_4:29913144-29913163	None:intergenic	35.0%
	TTTGAATATCAAGAACCTGC+TGG	+	chr1_4:29913314-29913333	Msa0159440:CDS	35.0%
	TAAGAATGATTTCTCTCCAG+AGG	+	chr1_4:29913410-29913429	Msa0159440:CDS	35.0%
!	ACTTGTTAGCATCTAAGTCA+AGG	+	chr1_4:29913489-29913508	Msa0159440:three_prime_UTR	35.0%
	AGGCATAACATAAAACCACA+TGG	-	chr1_4:29913520-29913539	None:intergenic	35.0%
	ATTGGCTGATGCGTTTAATA+TGG	+	chr1_4:29913622-29913641	Msa0159440:three_prime_UTR	35.0%
	GATGCGTTTAATATGGTACA+AGG	+	chr1_4:29913629-29913648	Msa0159440:three_prime_UTR	35.0%
	CGTAGTAATCGTGATGTGAT+AGG	-	chr1_4:29912207-29912226	None:intergenic	40.0%
!	AAGATCTTGCTGGTAACGTT+GGG	-	chr1_4:29912368-29912387	None:intergenic	40.0%
!!!	GGGTTTTGTTTTGGAATGCT+TGG	+	chr1_4:29912563-29912582	Msa0159440:intron	40.0%
	AAAAAGATAGCCACAAGAGC+AGG	-	chr1_4:29912812-29912831	None:intergenic	40.0%
	GCTATTGTGAAATCCGAAAG+GGG	+	chr1_4:29912877-29912896	Msa0159440:intron	40.0%
	ATCGCTGAATATTCCCCTTT+CGG	-	chr1_4:29912893-29912912	None:intergenic	40.0%
!!!	GGATTGTCATTTTCTCACGA+CGG	+	chr1_4:29913156-29913175	Msa0159440:intron	40.0%
	GGTGTAACCATCAGAAACAT+AGG	-	chr1_4:29913214-29913233	None:intergenic	40.0%
	AAGTTCGTAGGGAAAACCAA+TGG	+	chr1_4:29913442-29913461	Msa0159440:CDS	40.0%
	AGTTCGTAGGGAAAACCAAT+GGG	+	chr1_4:29913443-29913462	Msa0159440:CDS	40.0%
	TAAGTCAAGGATCTACCATG+TGG	+	chr1_4:29913502-29913521	Msa0159440:three_prime_UTR	40.0%
	CGTAGTAATCGTGATGTGAT+AGG	-	chr1_4:29912207-29912226	None:intergenic	40.0%
!	AAGATCTTGCTGGTAACGTT+GGG	-	chr1_4:29912368-29912387	None:intergenic	40.0%
!!!	GGGTTTTGTTTTGGAATGCT+TGG	+	chr1_4:29912563-29912582	Msa0159440:intron	40.0%
	AAAAAGATAGCCACAAGAGC+AGG	-	chr1_4:29912812-29912831	None:intergenic	40.0%
	GCTATTGTGAAATCCGAAAG+GGG	+	chr1_4:29912877-29912896	Msa0159440:intron	40.0%
	ATCGCTGAATATTCCCCTTT+CGG	-	chr1_4:29912893-29912912	None:intergenic	40.0%
!!!	GGATTGTCATTTTCTCACGA+CGG	+	chr1_4:29913156-29913175	Msa0159440:intron	40.0%
	GGTGTAACCATCAGAAACAT+AGG	-	chr1_4:29913214-29913233	None:intergenic	40.0%
	AAGTTCGTAGGGAAAACCAA+TGG	+	chr1_4:29913442-29913461	Msa0159440:CDS	40.0%
	AGTTCGTAGGGAAAACCAAT+GGG	+	chr1_4:29913443-29913462	Msa0159440:CDS	40.0%
	TAAGTCAAGGATCTACCATG+TGG	+	chr1_4:29913502-29913521	Msa0159440:three_prime_UTR	40.0%
!	ATCACTCTGAAGAGTTCCGA+CGG	+	chr1_4:29912248-29912267	Msa0159440:CDS	45.0%
!	CAAGATCTTGCTGGTAACGT+TGG	-	chr1_4:29912369-29912388	None:intergenic	45.0%
	CAACGTTACCAGCAAGATCT+TGG	+	chr1_4:29912367-29912386	Msa0159440:CDS	45.0%
	TGCTGAAGACAAACCTAACG+AGG	+	chr1_4:29912433-29912452	Msa0159440:CDS	45.0%
	GACTTAAGCTCATCCTCGTT+AGG	-	chr1_4:29912449-29912468	None:intergenic	45.0%
	ACGAGGATGAGCTTAAGTCT+TGG	+	chr1_4:29912450-29912469	Msa0159440:CDS	45.0%
	CGAGGATGAGCTTAAGTCTT+GGG	+	chr1_4:29912451-29912470	Msa0159440:CDS	45.0%
	CTGATCAACCTTCACGAACT+CGG	-	chr1_4:29912480-29912499	None:intergenic	45.0%
	ATGCTTGGGGGTCCTAAATT+AGG	+	chr1_4:29912578-29912597	Msa0159440:intron	45.0%
	TGCTTGGGGGTCCTAAATTA+GGG	+	chr1_4:29912579-29912598	Msa0159440:intron	45.0%
	ACAATTGTGCCTGCCTCTAT+TGG	+	chr1_4:29912751-29912770	Msa0159440:intron	45.0%
	CAATTGTGCCTGCCTCTATT+GGG	+	chr1_4:29912752-29912771	Msa0159440:intron	45.0%
	TGTTGAATTGCCTGCTCTTG+TGG	+	chr1_4:29912799-29912818	Msa0159440:intron	45.0%
	ACTGTGGCAGACATGATCAA+GGG	+	chr1_4:29913351-29913370	Msa0159440:CDS	45.0%
	AAGGTCTTGCGAATCTCTTC+AGG	-	chr1_4:29913384-29913403	None:intergenic	45.0%
	TGATTTCTCTCCAGAGGAAG+AGG	+	chr1_4:29913416-29913435	Msa0159440:CDS	45.0%
!	ATCACTCTGAAGAGTTCCGA+CGG	+	chr1_4:29912248-29912267	Msa0159440:CDS	45.0%
!	CAAGATCTTGCTGGTAACGT+TGG	-	chr1_4:29912369-29912388	None:intergenic	45.0%
	CAACGTTACCAGCAAGATCT+TGG	+	chr1_4:29912367-29912386	Msa0159440:CDS	45.0%
	TGCTGAAGACAAACCTAACG+AGG	+	chr1_4:29912433-29912452	Msa0159440:CDS	45.0%
	GACTTAAGCTCATCCTCGTT+AGG	-	chr1_4:29912449-29912468	None:intergenic	45.0%
	ACGAGGATGAGCTTAAGTCT+TGG	+	chr1_4:29912450-29912469	Msa0159440:CDS	45.0%
	CGAGGATGAGCTTAAGTCTT+GGG	+	chr1_4:29912451-29912470	Msa0159440:CDS	45.0%
	CTGATCAACCTTCACGAACT+CGG	-	chr1_4:29912480-29912499	None:intergenic	45.0%
	ATGCTTGGGGGTCCTAAATT+AGG	+	chr1_4:29912578-29912597	Msa0159440:intron	45.0%
	TGCTTGGGGGTCCTAAATTA+GGG	+	chr1_4:29912579-29912598	Msa0159440:intron	45.0%
	ACAATTGTGCCTGCCTCTAT+TGG	+	chr1_4:29912751-29912770	Msa0159440:intron	45.0%
	CAATTGTGCCTGCCTCTATT+GGG	+	chr1_4:29912752-29912771	Msa0159440:intron	45.0%
	TGTTGAATTGCCTGCTCTTG+TGG	+	chr1_4:29912799-29912818	Msa0159440:intron	45.0%
	ACTGTGGCAGACATGATCAA+GGG	+	chr1_4:29913351-29913370	Msa0159440:CDS	45.0%
	AAGGTCTTGCGAATCTCTTC+AGG	-	chr1_4:29913384-29913403	None:intergenic	45.0%
	TGATTTCTCTCCAGAGGAAG+AGG	+	chr1_4:29913416-29913435	Msa0159440:CDS	45.0%
!	GAAGATGATTGCGCTGACAG+TGG	+	chr1_4:29912332-29912351	Msa0159440:CDS	50.0%
!	TGCTGGTAACGTTGGGAAGA+GGG	-	chr1_4:29912361-29912380	None:intergenic	50.0%
!	TTGCTGGTAACGTTGGGAAG+AGG	-	chr1_4:29912362-29912381	None:intergenic	50.0%
	TACCAGCAAGATCTTGGCGA+AGG	+	chr1_4:29912373-29912392	Msa0159440:CDS	50.0%
	TTGGGATTCCGAGTTCGTGA+AGG	+	chr1_4:29912469-29912488	Msa0159440:CDS	50.0%
!	CGAGTTCGTGAAGGTTGATC+AGG	+	chr1_4:29912478-29912497	Msa0159440:CDS	50.0%
	GCATATAGCCCAATAGAGGC+AGG	-	chr1_4:29912763-29912782	None:intergenic	50.0%
	TCTGGCATGTAAGATCCAGC+AGG	-	chr1_4:29913332-29913351	None:intergenic	50.0%
	GGATCTTACATGCCAGACTG+TGG	+	chr1_4:29913335-29913354	Msa0159440:CDS	50.0%
	TGATCATGTCTGCCACAGTC+TGG	-	chr1_4:29913350-29913369	None:intergenic	50.0%
	GACTGTGGCAGACATGATCA+AGG	+	chr1_4:29913350-29913369	Msa0159440:CDS	50.0%
	CTGTGGCAGACATGATCAAG+GGG	+	chr1_4:29913352-29913371	Msa0159440:CDS	50.0%
	TTTCTCTCCAGAGGAAGAGG+AGG	+	chr1_4:29913419-29913438	Msa0159440:CDS	50.0%
	AGGAAGAGGAGGAAGTTCGT+AGG	+	chr1_4:29913430-29913449	Msa0159440:CDS	50.0%
	GGAAGAGGAGGAAGTTCGTA+GGG	+	chr1_4:29913431-29913450	Msa0159440:CDS	50.0%
!	GAAGATGATTGCGCTGACAG+TGG	+	chr1_4:29912332-29912351	Msa0159440:CDS	50.0%
!	TGCTGGTAACGTTGGGAAGA+GGG	-	chr1_4:29912361-29912380	None:intergenic	50.0%
!	TTGCTGGTAACGTTGGGAAG+AGG	-	chr1_4:29912362-29912381	None:intergenic	50.0%
	TACCAGCAAGATCTTGGCGA+AGG	+	chr1_4:29912373-29912392	Msa0159440:CDS	50.0%
	TTGGGATTCCGAGTTCGTGA+AGG	+	chr1_4:29912469-29912488	Msa0159440:CDS	50.0%
!	CGAGTTCGTGAAGGTTGATC+AGG	+	chr1_4:29912478-29912497	Msa0159440:CDS	50.0%
	GCATATAGCCCAATAGAGGC+AGG	-	chr1_4:29912763-29912782	None:intergenic	50.0%
	TCTGGCATGTAAGATCCAGC+AGG	-	chr1_4:29913332-29913351	None:intergenic	50.0%
	GGATCTTACATGCCAGACTG+TGG	+	chr1_4:29913335-29913354	Msa0159440:CDS	50.0%
	TGATCATGTCTGCCACAGTC+TGG	-	chr1_4:29913350-29913369	None:intergenic	50.0%
	GACTGTGGCAGACATGATCA+AGG	+	chr1_4:29913350-29913369	Msa0159440:CDS	50.0%
	CTGTGGCAGACATGATCAAG+GGG	+	chr1_4:29913352-29913371	Msa0159440:CDS	50.0%
	TTTCTCTCCAGAGGAAGAGG+AGG	+	chr1_4:29913419-29913438	Msa0159440:CDS	50.0%
	AGGAAGAGGAGGAAGTTCGT+AGG	+	chr1_4:29913430-29913449	Msa0159440:CDS	50.0%
	GGAAGAGGAGGAAGTTCGTA+GGG	+	chr1_4:29913431-29913450	Msa0159440:CDS	50.0%
	GACCTTCGAGGTCGATGAAG+CGG	+	chr1_4:29912274-29912293	Msa0159440:CDS	55.0%
	AACCGCTTCATCGACCTCGA+AGG	-	chr1_4:29912279-29912298	None:intergenic	55.0%
	GGTCGATGAAGCGGTTGCTT+TGG	+	chr1_4:29912283-29912302	Msa0159440:CDS	55.0%
	CACCTTCGCCAAGATCTTGC+TGG	-	chr1_4:29912378-29912397	None:intergenic	55.0%
	CGAACTTCCTCCTCTTCCTC+TGG	-	chr1_4:29913429-29913448	None:intergenic	55.0%
	GACCTTCGAGGTCGATGAAG+CGG	+	chr1_4:29912274-29912293	Msa0159440:CDS	55.0%
	AACCGCTTCATCGACCTCGA+AGG	-	chr1_4:29912279-29912298	None:intergenic	55.0%
	GGTCGATGAAGCGGTTGCTT+TGG	+	chr1_4:29912283-29912302	Msa0159440:CDS	55.0%
	CACCTTCGCCAAGATCTTGC+TGG	-	chr1_4:29912378-29912397	None:intergenic	55.0%
	CGAACTTCCTCCTCTTCCTC+TGG	-	chr1_4:29913429-29913448	None:intergenic	55.0%
	TTCCGACGGTGAGACCTTCG+AGG	+	chr1_4:29912262-29912281	Msa0159440:CDS	60.0%
	GACCTCGAAGGTCTCACCGT+CGG	-	chr1_4:29912267-29912286	None:intergenic	60.0%
	TTCCGACGGTGAGACCTTCG+AGG	+	chr1_4:29912262-29912281	Msa0159440:CDS	60.0%
	GACCTCGAAGGTCTCACCGT+CGG	-	chr1_4:29912267-29912286	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	29912096	29913668	29912096	ID=Msa0159440;Name=Msa0159440
chr1_4	mRNA	29912096	29913668	29912096	ID=Msa0159440-mRNA-1;Parent=Msa0159440;Name=Msa0159440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=131\|1\|1\|1\|1\|1\|2\|192\|156
chr1_4	exon	29912096	29912523	29912096	ID=Msa0159440-mRNA-1:exon:9640;Parent=Msa0159440-mRNA-1
chr1_4	exon	29913303	29913668	29913303	ID=Msa0159440-mRNA-1:exon:9641;Parent=Msa0159440-mRNA-1
chr1_4	five_prime_UTR	29912096	29912226	29912096	ID=Msa0159440-mRNA-1:five_prime_utr;Parent=Msa0159440-mRNA-1
chr1_4	CDS	29912227	29912523	29912227	ID=Msa0159440-mRNA-1:cds;Parent=Msa0159440-mRNA-1
chr1_4	CDS	29913303	29913476	29913303	ID=Msa0159440-mRNA-1:cds;Parent=Msa0159440-mRNA-1
chr1_4	three_prime_UTR	29913477	29913668	29913477	ID=Msa0159440-mRNA-1:three_prime_utr;Parent=Msa0159440-mRNA-1

Gene Sequence

>Msa0159440

ATGTCTTCAACAACAAGAAAGATCACTCTGAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCGCAGACGATCAAGCATATGATCGAAGATGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTGAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGCTGCTAATTATTTGAATATCAAGAACCTGCTGGATCTTACATGCCAGACTGTGGCAGACATGATCAAGGGGAAGACACCTGAAGAGATTCGCAAGACCTTCAACATTAAGAATGATTTCTCTCCAGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA

Protein sequence

>Msa0159440

MSSTTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE*