Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270680 | XP_013444255.1 | 74.026 | 231 | 5 | 3 | 1 | 176 | 407 | 637 | 1.08e-102 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270680 | sp|P94598|DHE3_BACTN | 29.004 | 231 | 105 | 5 | 1 | 176 | 218 | 444 | 1.43e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270680 | A0A072TLH9 | 74.026 | 231 | 5 | 3 | 1 | 176 | 407 | 637 | 5.17e-103 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046100 | Msa1270680 | 0.812570 | 3.967488e-51 | -8.615850e-47 |
| Msa0708520 | Msa1270680 | 0.804695 | 1.909065e-49 | -8.615850e-47 |
| Msa0795680 | Msa1270680 | 0.804510 | 2.086519e-49 | -8.615850e-47 |
| Msa0184960 | Msa1270680 | 0.802249 | 6.135699e-49 | -8.615850e-47 |
| Msa1270610 | Msa1270680 | 0.943363 | 1.377063e-102 | -8.615850e-47 |
| Msa1270680 | Msa1427760 | 0.822076 | 2.875037e-53 | -8.615850e-47 |
| Msa1270680 | Msa1464810 | 0.808424 | 3.119014e-50 | -8.615850e-47 |
| Msa0417880 | Msa1270680 | 0.801851 | 7.409991e-49 | -8.615850e-47 |
| Msa0420840 | Msa1270680 | 0.822359 | 2.470822e-53 | -8.615850e-47 |
| Msa0442670 | Msa1270680 | 0.809352 | 1.973829e-50 | -8.615850e-47 |
| Msa0342360 | Msa1270680 | 0.801344 | 9.411123e-49 | -8.615850e-47 |
| Msa1179940 | Msa1270680 | 0.846615 | 1.943578e-59 | -8.615850e-47 |
| Msa1179970 | Msa1270680 | 0.839957 | 1.161318e-57 | -8.615850e-47 |
| Msa0488400 | Msa1270680 | 0.821042 | 4.981914e-53 | -8.615850e-47 |
| Msa0497780 | Msa1270680 | 0.800957 | 1.129396e-48 | -8.615850e-47 |
| Msa0509610 | Msa1270680 | 0.808521 | 2.972947e-50 | -8.615850e-47 |
| Msa0538700 | Msa1270680 | 0.803049 | 4.196361e-49 | -8.615850e-47 |
| Msa0931720 | Msa1270680 | 0.812428 | 4.260737e-51 | -8.615850e-47 |
| Msa0935670 | Msa1270680 | 0.819735 | 9.934616e-53 | -8.615850e-47 |
| Msa0979010 | Msa1270680 | 0.815766 | 7.812308e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270680 | MtrunA17_Chr8g0341541 | 74.026 | 231 | 5 | 3 | 1 | 176 | 407 | 637 | 9.95e-107 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270680 | AT1G51720.1 | 56.277 | 231 | 46 | 2 | 1 | 176 | 407 | 637 | 6.45e-69 | 221 |
| Msa1270680 | AT1G51720.3 | 56.277 | 231 | 46 | 2 | 1 | 176 | 407 | 637 | 6.45e-69 | 221 |
| Msa1270680 | AT1G51720.2 | 78.571 | 70 | 15 | 0 | 1 | 70 | 407 | 476 | 5.80e-32 | 120 |
| Msa1270680 | AT1G51720.4 | 78.049 | 41 | 9 | 0 | 1 | 41 | 407 | 447 | 5.61e-14 | 69.3 |
Find 55 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGGCTGCAACTGATTT+TGG | 0.156312 | 8_3:+4016464 | Msa1270680:CDS |
| GATGATTATTGTGAAATATT+TGG | 0.181283 | 8_3:+4017159 | Msa1270680:three_prime_UTR |
| ATCAGATTCTAGGGGATATT+TGG | 0.211286 | 8_3:+4014650 | Msa1270680:intron |
| AAATTTAATCTTGACATTCT+TGG | 0.246329 | 8_3:-4013987 | None:intergenic |
| TAAAGCATTAATCAGATTCT+AGG | 0.253678 | 8_3:+4014640 | Msa1270680:intron |
| TACAAGGAAATATGCTTTCT+TGG | 0.260904 | 8_3:-4017008 | None:intergenic |
| CCAGCAATGGCTGCTGGTGC+TGG | 0.263171 | 8_3:+4015153 | Msa1270680:CDS |
| GCTCTTCCCATTTCAGTATC+AGG | 0.282241 | 8_3:+4014434 | Msa1270680:CDS |
| ATAAAGAACTCAAAGGATTA+AGG | 0.294116 | 8_3:+4014067 | Msa1270680:CDS |
| CGTATTACCTGATACTGAAA+TGG | 0.300882 | 8_3:-4014441 | None:intergenic |
| CTTGACATTCTTGGTTGAAA+TGG | 0.304819 | 8_3:-4013978 | None:intergenic |
| CCAGCACCAGCAGCCATTGC+TGG | 0.309675 | 8_3:-4015153 | None:intergenic |
| GGACTTTGAATCTAAATTAC+AGG | 0.316783 | 8_3:+4016110 | Msa1270680:CDS |
| GTACAATATTGTCAAGAAAA+AGG | 0.321606 | 8_3:+4017097 | Msa1270680:three_prime_UTR |
| GACTTATCAAAGAGCTATAA+AGG | 0.368168 | 8_3:+4016448 | Msa1270680:CDS |
| GGATATTTGGTTGATGAAGA+TGG | 0.368744 | 8_3:+4014663 | Msa1270680:CDS |
| AATTGAATATTGCGAAACTT+TGG | 0.387211 | 8_3:+4016932 | Msa1270680:three_prime_UTR |
| GTTGTTATATGTCAGGGCTT+TGG | 0.392307 | 8_3:+4016839 | Msa1270680:intron |
| GTTGCTCCAGCAATGGCTGC+TGG | 0.397576 | 8_3:+4015147 | Msa1270680:CDS |
| GATATTTGGTTGATGAAGAT+GGG | 0.402651 | 8_3:+4014664 | Msa1270680:CDS |
| TTGCGTTGTTTAACCTGGCC+AGG | 0.420927 | 8_3:+4017132 | Msa1270680:three_prime_UTR |
| GCAATGGCTGCTGGTGCTGG+AGG | 0.432301 | 8_3:+4015156 | Msa1270680:CDS |
| TTAGAGAAGCTAATTGCATA+TGG | 0.436088 | 8_3:+4014410 | Msa1270680:CDS |
| CCTTGCATGTAGGTTGTGGC+TGG | 0.440511 | 8_3:+4016039 | Msa1270680:intron |
| TATGTCAGGGCTTTGGTACA+TGG | 0.442170 | 8_3:+4016846 | Msa1270680:intron |
| AAAGCATTAATCAGATTCTA+GGG | 0.444267 | 8_3:+4014641 | Msa1270680:intron |
| CAATGGCTGCTGGTGCTGGA+GGG | 0.445162 | 8_3:+4015157 | Msa1270680:CDS |
| AATGGCTGCTGGTGCTGGAG+GGG | 0.447659 | 8_3:+4015158 | Msa1270680:CDS |
| GTCCTTTGCGTTGTTTAACC+TGG | 0.450498 | 8_3:+4017127 | Msa1270680:three_prime_UTR |
| TTGAACTGCGTCAGTAGTAC+AGG | 0.450654 | 8_3:-4015100 | None:intergenic |
| ATGAGTGCAGTTTGATGAAC+TGG | 0.455477 | 8_3:+4016079 | Msa1270680:CDS |
| TCATGGCTTGAGCAATAGTT+AGG | 0.456865 | 8_3:-4016887 | None:intergenic |
| TCATGTCAGCTAGCATGAGC+TGG | 0.469008 | 8_3:-4014044 | None:intergenic |
| AGATGTGTAGTGAGTGGTTC+TGG | 0.486916 | 8_3:+4014368 | Msa1270680:intron |
| GTATTACCTGATACTGAAAT+GGG | 0.508270 | 8_3:-4014440 | None:intergenic |
| GCTCAAGCCATGACTGATCA+AGG | 0.517213 | 8_3:+4016897 | Msa1270680:CDS |
| ATAATCATCAAAGCCTGGCC+AGG | 0.528403 | 8_3:-4017145 | None:intergenic |
| TGTTCTTGTTGCTCCAGCAA+TGG | 0.535504 | 8_3:+4015140 | Msa1270680:CDS |
| AATTTAGATTCAAAGTCCTC+CGG | 0.549512 | 8_3:-4016105 | None:intergenic |
| TCACAATAATCATCAAAGCC+TGG | 0.553826 | 8_3:-4017150 | None:intergenic |
| TACACAGCCTTGATCAGTCA+TGG | 0.556808 | 8_3:-4016904 | None:intergenic |
| CAGTTTGATGAACTGGTCAC+CGG | 0.570708 | 8_3:+4016086 | Msa1270680:CDS |
| GACATTGTGTCATCGACCCT+TGG | 0.572083 | 8_3:-4016981 | None:intergenic |
| GGCTTGAGCAATAGTTAGGA+AGG | 0.576957 | 8_3:-4016883 | None:intergenic |
| CATGTCAGCTAGCATGAGCT+GGG | 0.581909 | 8_3:-4014043 | None:intergenic |
| TTTATGTTACAAATTCTACA+AGG | 0.584894 | 8_3:-4017024 | None:intergenic |
| ATGCTAGTATTTATCACCAA+GGG | 0.615766 | 8_3:+4016965 | Msa1270680:three_prime_UTR |
| CTGACGCAGTTCAAGTTCTG+AGG | 0.637492 | 8_3:+4015109 | Msa1270680:CDS |
| GGCCAGGTTAAACAACGCAA+AGG | 0.650078 | 8_3:-4017129 | None:intergenic |
| GATGCTAGTATTTATCACCA+AGG | 0.657648 | 8_3:+4016964 | Msa1270680:three_prime_UTR |
| TTTGATGAACTGGTCACCGG+AGG | 0.674578 | 8_3:+4016089 | Msa1270680:CDS |
| GACATGAATAAAGAACTCAA+AGG | 0.675264 | 8_3:+4014060 | Msa1270680:CDS |
| TGAACTGCGTCAGTAGTACA+GGG | 0.688964 | 8_3:-4015099 | None:intergenic |
| TCCTGCAGATGTGTAGTGAG+TGG | 0.690117 | 8_3:+4014362 | Msa1270680:intron |
| AAGCATTAATCAGATTCTAG+GGG | 0.694097 | 8_3:+4014642 | Msa1270680:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATATTGAATACAAA+AGG | - | chr8_3:4014179-4014198 | None:intergenic | 10.0% |
| !! | ATAAATAACTAATTCATTTA+AGG | + | chr8_3:4015754-4015773 | Msa1270680:intron | 10.0% |
| !! | ATATTGGTAAATATAACTAT+AGG | + | chr8_3:4014549-4014568 | Msa1270680:intron | 15.0% |
| !! | TTAACAATGGTTTAATATAT+CGG | - | chr8_3:4015535-4015554 | None:intergenic | 15.0% |
| !! | ACTAAATTTACATTTAACAA+TGG | - | chr8_3:4015548-4015567 | None:intergenic | 15.0% |
| !! | TTGTTAAATGTAAATTTAGT+CGG | + | chr8_3:4015548-4015567 | Msa1270680:intron | 15.0% |
| !!! | TTTATATTTTGAAATGACAA+GGG | - | chr8_3:4015950-4015969 | None:intergenic | 15.0% |
| !!! | TTTTATATTTTGAAATGACA+AGG | - | chr8_3:4015951-4015970 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAGGAAAAAAAAA+AGG | + | chr8_3:4016340-4016359 | Msa1270680:intron | 15.0% |
| !!! | TTTTGAAAGGAAAAAAAAAA+GGG | + | chr8_3:4016341-4016360 | Msa1270680:intron | 15.0% |
| !! | ATAAAAACTGATTATGAAAA+GGG | + | chr8_3:4017042-4017061 | Msa1270680:three_prime_UTR | 15.0% |
| !! | AAATTTAATCTTGACATTCT+TGG | - | chr8_3:4013990-4014009 | None:intergenic | 20.0% |
| !! | CAACAATCTTCTTTATATAA+TGG | - | chr8_3:4014113-4014132 | None:intergenic | 20.0% |
| !! | ATCATAATAATGACAAACAA+GGG | - | chr8_3:4014155-4014174 | None:intergenic | 20.0% |
| !! | AATCATAATAATGACAAACA+AGG | - | chr8_3:4014156-4014175 | None:intergenic | 20.0% |
| !! | AAAAGGAAATTATGGAAAAT+GGG | - | chr8_3:4014244-4014263 | None:intergenic | 20.0% |
| !! | TATGAAATAAATTTAGGAGA+CGG | - | chr8_3:4014315-4014334 | None:intergenic | 20.0% |
| !! | TCCTAAATTTATTTCATACT+TGG | + | chr8_3:4014317-4014336 | Msa1270680:intron | 20.0% |
| !! | TCCAAGTATGAAATAAATTT+AGG | - | chr8_3:4014321-4014340 | None:intergenic | 20.0% |
| !! | TTTCTTTGATGAATATATTG+AGG | + | chr8_3:4014466-4014485 | Msa1270680:intron | 20.0% |
| !! | TTAATCATCACTAAGAATAT+TGG | + | chr8_3:4014533-4014552 | Msa1270680:intron | 20.0% |
| !!! | TTTTGCTTCATCATAATATT+TGG | - | chr8_3:4014863-4014882 | None:intergenic | 20.0% |
| !! | CTTCTTATAATTTGAATCTT+AGG | + | chr8_3:4015066-4015085 | Msa1270680:intron | 20.0% |
| !! | TAAATAAAAACTCTCAATCA+TGG | - | chr8_3:4015305-4015324 | None:intergenic | 20.0% |
| !!! | CTCCTTTTAAGAATTATAAA+TGG | + | chr8_3:4016226-4016245 | Msa1270680:intron | 20.0% |
| !! | GACCATTTATAATTCTTAAA+AGG | - | chr8_3:4016231-4016250 | None:intergenic | 20.0% |
| !!! | AAATTGTTAAGAGTTTTCAT+AGG | - | chr8_3:4016541-4016560 | None:intergenic | 20.0% |
| !!! | ATTTTACTTTTATACAAGGA+TGG | - | chr8_3:4016652-4016671 | None:intergenic | 20.0% |
| !! | TTTATGTTACAAATTCTACA+AGG | - | chr8_3:4017027-4017046 | None:intergenic | 20.0% |
| !! | CATAAAAACTGATTATGAAA+AGG | + | chr8_3:4017041-4017060 | Msa1270680:three_prime_UTR | 20.0% |
| !! | TAAAAACTGATTATGAAAAG+GGG | + | chr8_3:4017043-4017062 | Msa1270680:three_prime_UTR | 20.0% |
| !! | GATGATTATTGTGAAATATT+TGG | + | chr8_3:4017159-4017178 | Msa1270680:three_prime_UTR | 20.0% |
| ! | ATAAAGAACTCAAAGGATTA+AGG | + | chr8_3:4014067-4014086 | Msa1270680:CDS | 25.0% |
| ! | TTCTAAGTTTCTAATCTTGA+TGG | - | chr8_3:4014218-4014237 | None:intergenic | 25.0% |
| ! | GAAAAGGAAATTATGGAAAA+TGG | - | chr8_3:4014245-4014264 | None:intergenic | 25.0% |
| ! | ACATTCAGAAAAGGAAATTA+TGG | - | chr8_3:4014252-4014271 | None:intergenic | 25.0% |
| !! | GAATCTAAAACATTCAGAAA+AGG | - | chr8_3:4014261-4014280 | None:intergenic | 25.0% |
| !! | TAAAGCATTAATCAGATTCT+AGG | + | chr8_3:4014640-4014659 | Msa1270680:intron | 25.0% |
| !! | AAAGCATTAATCAGATTCTA+GGG | + | chr8_3:4014641-4014660 | Msa1270680:intron | 25.0% |
| ! | ATCATCATATCATACATAAC+TGG | - | chr8_3:4014788-4014807 | None:intergenic | 25.0% |
| !!! | TAATGTTGTTTTGCTTAACA+CGG | - | chr8_3:4015233-4015252 | None:intergenic | 25.0% |
| ! | TTCACAAAGATAGAAACATA+CGG | - | chr8_3:4015612-4015631 | None:intergenic | 25.0% |
| ! | TTTCTATCTTTGTGAAATTG+TGG | + | chr8_3:4015616-4015635 | Msa1270680:intron | 25.0% |
| !!! | AGTTAATATTTTTTTGCGCA+AGG | - | chr8_3:4015733-4015752 | None:intergenic | 25.0% |
| ! | AAGAATTATAAATGGTCGAT+AGG | + | chr8_3:4016234-4016253 | Msa1270680:intron | 25.0% |
| !!! | TTCCATGTTAGTATTTTGAA+AGG | + | chr8_3:4016328-4016347 | Msa1270680:intron | 25.0% |
| ! | TTCCTTTCAAAATACTAACA+TGG | - | chr8_3:4016333-4016352 | None:intergenic | 25.0% |
| ! | ACATGACATAACATTGTTTA+TGG | - | chr8_3:4016380-4016399 | None:intergenic | 25.0% |
| !!! | GTTCTGTTGCTTTTTTATTT+TGG | + | chr8_3:4016408-4016427 | Msa1270680:intron | 25.0% |
| ! | TACTGAAAAAAGAACTTACT+CGG | - | chr8_3:4016507-4016526 | None:intergenic | 25.0% |
| ! | GTTACTAGATATATAAACCT+GGG | - | chr8_3:4016587-4016606 | None:intergenic | 25.0% |
| ! | TGTTACTAGATATATAAACC+TGG | - | chr8_3:4016588-4016607 | None:intergenic | 25.0% |
| ! | GGTTTATATATCTAGTAACA+TGG | + | chr8_3:4016588-4016607 | Msa1270680:intron | 25.0% |
| !!! | ACGCATTTTACTTTTATACA+AGG | - | chr8_3:4016656-4016675 | None:intergenic | 25.0% |
| ! | AAATAAAATATCCATTGCAG+GGG | - | chr8_3:4016781-4016800 | None:intergenic | 25.0% |
| ! | GAAATAAAATATCCATTGCA+GGG | - | chr8_3:4016782-4016801 | None:intergenic | 25.0% |
| ! | AATTGAATATTGCGAAACTT+TGG | + | chr8_3:4016932-4016951 | Msa1270680:three_prime_UTR | 25.0% |
| ! | AAAAACTGATTATGAAAAGG+GGG | + | chr8_3:4017044-4017063 | Msa1270680:three_prime_UTR | 25.0% |
| ! | GTACAATATTGTCAAGAAAA+AGG | + | chr8_3:4017097-4017116 | Msa1270680:three_prime_UTR | 25.0% |
| GACATGAATAAAGAACTCAA+AGG | + | chr8_3:4014060-4014079 | Msa1270680:CDS | 30.0% | |
| TAATAATGACAAACAAGGGT+CGG | - | chr8_3:4014151-4014170 | None:intergenic | 30.0% | |
| CAAATTTCACACTAGATAAC+TGG | - | chr8_3:4014292-4014311 | None:intergenic | 30.0% | |
| TTAGAGAAGCTAATTGCATA+TGG | + | chr8_3:4014410-4014429 | Msa1270680:CDS | 30.0% | |
| GTATTACCTGATACTGAAAT+GGG | - | chr8_3:4014443-4014462 | None:intergenic | 30.0% | |
| AAGCATTAATCAGATTCTAG+GGG | + | chr8_3:4014642-4014661 | Msa1270680:intron | 30.0% | |
| !! | GATATTTGGTTGATGAAGAT+GGG | + | chr8_3:4014664-4014683 | Msa1270680:CDS | 30.0% |
| GATGATCCTTGTTCATAAAT+TGG | + | chr8_3:4014802-4014821 | Msa1270680:intron | 30.0% | |
| ATTATGATGAAGCAAAACCA+TGG | + | chr8_3:4014866-4014885 | Msa1270680:intron | 30.0% | |
| AACCTGAATTACCAAATTCA+TGG | - | chr8_3:4014953-4014972 | None:intergenic | 30.0% | |
| !!! | AATGTTGTTTTGCTTAACAC+GGG | - | chr8_3:4015232-4015251 | None:intergenic | 30.0% |
| TTAACGACCACTAATGTTAA+CGG | - | chr8_3:4015261-4015280 | None:intergenic | 30.0% | |
| AATGTTATGTCTGATGTTTG+AGG | - | chr8_3:4015485-4015504 | None:intergenic | 30.0% | |
| AATTTAGATTCAAAGTCCTC+CGG | - | chr8_3:4016108-4016127 | None:intergenic | 30.0% | |
| GGACTTTGAATCTAAATTAC+AGG | + | chr8_3:4016110-4016129 | Msa1270680:CDS | 30.0% | |
| TACAGGTATTTATAATGAGC+TGG | + | chr8_3:4016127-4016146 | Msa1270680:intron | 30.0% | |
| !!! | TGTTGCTTTTTTATTTTGGC+AGG | + | chr8_3:4016412-4016431 | Msa1270680:intron | 30.0% |
| GACTTATCAAAGAGCTATAA+AGG | + | chr8_3:4016448-4016467 | Msa1270680:CDS | 30.0% | |
| ACTGAAAAAAGAACTTACTC+GGG | - | chr8_3:4016506-4016525 | None:intergenic | 30.0% | |
| ! | GTAAAATGCGTTTTACTAAG+TGG | + | chr8_3:4016665-4016684 | Msa1270680:intron | 30.0% |
| TGTTAAGACTTCAACATAGT+TGG | - | chr8_3:4016751-4016770 | None:intergenic | 30.0% | |
| CGAAATAAAATATCCATTGC+AGG | - | chr8_3:4016783-4016802 | None:intergenic | 30.0% | |
| AACCAAACAAATATTAACCC+GGG | - | chr8_3:4016819-4016838 | None:intergenic | 30.0% | |
| CAACCAAACAAATATTAACC+CGG | - | chr8_3:4016820-4016839 | None:intergenic | 30.0% | |
| ! | TTTGGTTGTTGTTATATGTC+AGG | + | chr8_3:4016832-4016851 | Msa1270680:intron | 30.0% |
| ! | TTGGTTGTTGTTATATGTCA+GGG | + | chr8_3:4016833-4016852 | Msa1270680:intron | 30.0% |
| ATGCTAGTATTTATCACCAA+GGG | + | chr8_3:4016965-4016984 | Msa1270680:three_prime_UTR | 30.0% | |
| TACAAGGAAATATGCTTTCT+TGG | - | chr8_3:4017011-4017030 | None:intergenic | 30.0% | |
| CTTGACATTCTTGGTTGAAA+TGG | - | chr8_3:4013981-4014000 | None:intergenic | 35.0% | |
| CGTATTACCTGATACTGAAA+TGG | - | chr8_3:4014444-4014463 | None:intergenic | 35.0% | |
| TGCACTTCATTATTGCATGT+CGG | + | chr8_3:4014493-4014512 | Msa1270680:intron | 35.0% | |
| ! | ATCAGATTCTAGGGGATATT+TGG | + | chr8_3:4014650-4014669 | Msa1270680:intron | 35.0% |
| !! | GGATATTTGGTTGATGAAGA+TGG | + | chr8_3:4014663-4014682 | Msa1270680:CDS | 35.0% |
| CATACGCCAATTTATGAACA+AGG | - | chr8_3:4014811-4014830 | None:intergenic | 35.0% | |
| ACTATTCAAAGACCTATGCT+CGG | + | chr8_3:4014836-4014855 | Msa1270680:intron | 35.0% | |
| ATAATATTTGGACCGAGCAT+AGG | - | chr8_3:4014851-4014870 | None:intergenic | 35.0% | |
| TCAATCTGATGCCATGAATT+TGG | + | chr8_3:4014939-4014958 | Msa1270680:intron | 35.0% | |
| ! | TGCCATGAATTTGGTAATTC+AGG | + | chr8_3:4014948-4014967 | Msa1270680:intron | 35.0% |
| GGTTGTCGTATACTAATAGA+AGG | + | chr8_3:4014969-4014988 | Msa1270680:intron | 35.0% | |
| AATATGCATGCAATTTGCAC+AGG | - | chr8_3:4015209-4015228 | None:intergenic | 35.0% | |
| TAGTTGACCGTTAACATTAG+TGG | + | chr8_3:4015251-4015270 | Msa1270680:intron | 35.0% | |
| TCAAACAAGAGCCTGAATTA+GGG | - | chr8_3:4015428-4015447 | None:intergenic | 35.0% | |
| AGAAACATACGGTTGTATCA+AGG | - | chr8_3:4015601-4015620 | None:intergenic | 35.0% | |
| CGGATATACACAAACATACT+TGG | - | chr8_3:4015683-4015702 | None:intergenic | 35.0% | |
| !! | ACTAATACCATTTTGACCTG+AGG | + | chr8_3:4015835-4015854 | Msa1270680:intron | 35.0% |
| !! | CTAATACCATTTTGACCTGA+GGG | + | chr8_3:4015836-4015855 | Msa1270680:intron | 35.0% |
| TTGTGTTTGCACTGAAAAAC+AGG | + | chr8_3:4015888-4015907 | Msa1270680:intron | 35.0% | |
| TTCAGTCATACACACATCAA+TGG | - | chr8_3:4015914-4015933 | None:intergenic | 35.0% | |
| ATTTATAATGAGCTGGTCAC+CGG | + | chr8_3:4016134-4016153 | Msa1270680:intron | 35.0% | |
| TAGTTCATAAAACTGCACTC+CGG | - | chr8_3:4016156-4016175 | None:intergenic | 35.0% | |
| TATAAATGGTCGATAGGTTG+CGG | + | chr8_3:4016240-4016259 | Msa1270680:intron | 35.0% | |
| !! | ATAAAGGCTGCAACTGATTT+TGG | + | chr8_3:4016464-4016483 | Msa1270680:CDS | 35.0% |
| CTGAAAAAAGAACTTACTCG+GGG | - | chr8_3:4016505-4016524 | None:intergenic | 35.0% | |
| AACCCGGGTTAATATTTGTT+TGG | + | chr8_3:4016814-4016833 | Msa1270680:intron | 35.0% | |
| GATGCTAGTATTTATCACCA+AGG | + | chr8_3:4016964-4016983 | Msa1270680:three_prime_UTR | 35.0% | |
| AGGGGGAAATCAAAATTTAG+AGG | + | chr8_3:4017061-4017080 | Msa1270680:three_prime_UTR | 35.0% | |
| TCACAATAATCATCAAAGCC+TGG | - | chr8_3:4017153-4017172 | None:intergenic | 35.0% | |
| ! | ACAAGTTTTTGTGCATCTGC+AGG | + | chr8_3:4014011-4014030 | Msa1270680:five_prime_UTR | 40.0% |
| GAACAGATCAGGGTACATAT+AGG | - | chr8_3:4014597-4014616 | None:intergenic | 40.0% | |
| CACATTCTGTGAACAGATCA+GGG | - | chr8_3:4014607-4014626 | None:intergenic | 40.0% | |
| AAGCTCAGCATAGAAGTTTG+CGG | + | chr8_3:4014724-4014743 | Msa1270680:intron | 40.0% | |
| AAGCAAAACCATGGACAGAA+AGG | + | chr8_3:4014875-4014894 | Msa1270680:intron | 40.0% | |
| ! | CGTTGTTGTTGTGTTCCATT+TGG | + | chr8_3:4015362-4015381 | Msa1270680:intron | 40.0% |
| TTGTTGTGTTCCATTTGGCA+TGG | + | chr8_3:4015367-4015386 | Msa1270680:intron | 40.0% | |
| CACTACATATCCATGCCAAA+TGG | - | chr8_3:4015380-4015399 | None:intergenic | 40.0% | |
| GGCATGGATATGTAGTGAAA+CGG | + | chr8_3:4015383-4015402 | Msa1270680:intron | 40.0% | |
| GCATGGATATGTAGTGAAAC+GGG | + | chr8_3:4015384-4015403 | Msa1270680:intron | 40.0% | |
| GATATGTAGTGAAACGGGAA+GGG | + | chr8_3:4015389-4015408 | Msa1270680:intron | 40.0% | |
| CTCAAACAAGAGCCTGAATT+AGG | - | chr8_3:4015429-4015448 | None:intergenic | 40.0% | |
| ! | CTAATTCAGGCTCTTGTTTG+AGG | + | chr8_3:4015427-4015446 | Msa1270680:intron | 40.0% |
| TACACAAACATACTTGGCAG+AGG | - | chr8_3:4015677-4015696 | None:intergenic | 40.0% | |
| ATACGCACACAGGTCAATAA+AGG | - | chr8_3:4015803-4015822 | None:intergenic | 40.0% | |
| AACAAGTACAATACGCACAC+AGG | - | chr8_3:4015813-4015832 | None:intergenic | 40.0% | |
| TGATGTGTGTATGACTGAAG+AGG | + | chr8_3:4015915-4015934 | Msa1270680:intron | 40.0% | |
| ATCTTGTTCTCCTTGCATGT+AGG | + | chr8_3:4016029-4016048 | Msa1270680:intron | 40.0% | |
| ATGAGTGCAGTTTGATGAAC+TGG | + | chr8_3:4016079-4016098 | Msa1270680:CDS | 40.0% | |
| ACTAAGTGGTTGAGTCTAAG+TGG | + | chr8_3:4016679-4016698 | Msa1270680:intron | 40.0% | |
| ! | AACATTTTGTTCCCCTGCAA+TGG | + | chr8_3:4016767-4016786 | Msa1270680:intron | 40.0% |
| GTTGTTATATGTCAGGGCTT+TGG | + | chr8_3:4016839-4016858 | Msa1270680:intron | 40.0% | |
| TCATGGCTTGAGCAATAGTT+AGG | - | chr8_3:4016890-4016909 | None:intergenic | 40.0% | |
| AGATGTGTAGTGAGTGGTTC+TGG | + | chr8_3:4014368-4014387 | Msa1270680:intron | 45.0% | |
| GCTCTTCCCATTTCAGTATC+AGG | + | chr8_3:4014434-4014453 | Msa1270680:CDS | 45.0% | |
| CAGATCAGGGTACATATAGG+AGG | - | chr8_3:4014594-4014613 | None:intergenic | 45.0% | |
| GCACATTCTGTGAACAGATC+AGG | - | chr8_3:4014608-4014627 | None:intergenic | 45.0% | |
| TGAACTGCGTCAGTAGTACA+GGG | - | chr8_3:4015102-4015121 | None:intergenic | 45.0% | |
| TTGAACTGCGTCAGTAGTAC+AGG | - | chr8_3:4015103-4015122 | None:intergenic | 45.0% | |
| TGTTCTTGTTGCTCCAGCAA+TGG | + | chr8_3:4015140-4015159 | Msa1270680:CDS | 45.0% | |
| GGATATGTAGTGAAACGGGA+AGG | + | chr8_3:4015388-4015407 | Msa1270680:intron | 45.0% | |
| ACCAAGTGGTTCCCTAATTC+AGG | + | chr8_3:4015414-4015433 | Msa1270680:intron | 45.0% | |
| CTTTGTGAAATTGTGGCCGA+TGG | + | chr8_3:4015623-4015642 | Msa1270680:intron | 45.0% | |
| GCAGAGGTAGTTTCCATTAC+CGG | - | chr8_3:4015661-4015680 | None:intergenic | 45.0% | |
| TCATCATTGCAGGAGGAAGA+AGG | - | chr8_3:4015707-4015726 | None:intergenic | 45.0% | |
| TTCTCCTTGCATGTAGGTTG+TGG | + | chr8_3:4016035-4016054 | Msa1270680:intron | 45.0% | |
| CAGTTTGATGAACTGGTCAC+CGG | + | chr8_3:4016086-4016105 | Msa1270680:CDS | 45.0% | |
| CTTTACTCTCTATAGTGCCC+AGG | + | chr8_3:4016567-4016586 | Msa1270680:intron | 45.0% | |
| TTTCGTCCAAACATGCAACC+CGG | + | chr8_3:4016798-4016817 | Msa1270680:intron | 45.0% | |
| ATTAACCCGGGTTGCATGTT+TGG | - | chr8_3:4016807-4016826 | None:intergenic | 45.0% | |
| ! | TATGTCAGGGCTTTGGTACA+TGG | + | chr8_3:4016846-4016865 | Msa1270680:intron | 45.0% |
| GGCTTGAGCAATAGTTAGGA+AGG | - | chr8_3:4016886-4016905 | None:intergenic | 45.0% | |
| TACACAGCCTTGATCAGTCA+TGG | - | chr8_3:4016907-4016926 | None:intergenic | 45.0% | |
| GTCCTTTGCGTTGTTTAACC+TGG | + | chr8_3:4017127-4017146 | Msa1270680:three_prime_UTR | 45.0% | |
| ATAATCATCAAAGCCTGGCC+AGG | - | chr8_3:4017148-4017167 | None:intergenic | 45.0% | |
| CATGTCAGCTAGCATGAGCT+GGG | - | chr8_3:4014046-4014065 | None:intergenic | 50.0% | |
| TCATGTCAGCTAGCATGAGC+TGG | - | chr8_3:4014047-4014066 | None:intergenic | 50.0% | |
| TCCTGCAGATGTGTAGTGAG+TGG | + | chr8_3:4014362-4014381 | Msa1270680:intron | 50.0% | |
| ACCACTCACTACACATCTGC+AGG | - | chr8_3:4014366-4014385 | None:intergenic | 50.0% | |
| AGATCGCACCTTTCTGTCCA+TGG | - | chr8_3:4014886-4014905 | None:intergenic | 50.0% | |
| ! | CTGACGCAGTTCAAGTTCTG+AGG | + | chr8_3:4015109-4015128 | Msa1270680:CDS | 50.0% |
| GCCTGAATTAGGGAACCACT+TGG | - | chr8_3:4015418-4015437 | None:intergenic | 50.0% | |
| GAAATTGTGGCCGATGGTCA+AGG | + | chr8_3:4015629-4015648 | Msa1270680:intron | 50.0% | |
| GTCAAGGAGGATTCCGGTAA+TGG | + | chr8_3:4015645-4015664 | Msa1270680:intron | 50.0% | |
| CATTGCAGGAGGAAGAAGGT+CGG | - | chr8_3:4015703-4015722 | None:intergenic | 50.0% | |
| AAGGCTCTCATCATTGCAGG+AGG | - | chr8_3:4015714-4015733 | None:intergenic | 50.0% | |
| GCGAAACCCTCAGGTCAAAA+TGG | - | chr8_3:4015845-4015864 | None:intergenic | 50.0% | |
| CATCATCAAGCGAAACCCTC+AGG | - | chr8_3:4015854-4015873 | None:intergenic | 50.0% | |
| CTGAGGGTTTCGCTTGATGA+TGG | + | chr8_3:4015852-4015871 | Msa1270680:intron | 50.0% | |
| TTTGATGAACTGGTCACCGG+AGG | + | chr8_3:4016089-4016108 | Msa1270680:CDS | 50.0% | |
| TTCGTCCAAACATGCAACCC+GGG | + | chr8_3:4016799-4016818 | Msa1270680:intron | 50.0% | |
| GCTCAAGCCATGACTGATCA+AGG | + | chr8_3:4016897-4016916 | Msa1270680:CDS | 50.0% | |
| GACATTGTGTCATCGACCCT+TGG | - | chr8_3:4016984-4017003 | None:intergenic | 50.0% | |
| GGCCAGGTTAAACAACGCAA+AGG | - | chr8_3:4017132-4017151 | None:intergenic | 50.0% | |
| TTGCGTTGTTTAACCTGGCC+AGG | + | chr8_3:4017132-4017151 | Msa1270680:three_prime_UTR | 50.0% | |
| AAACGGGAAGGGAGACCAAG+TGG | + | chr8_3:4015400-4015419 | Msa1270680:intron | 55.0% | |
| ATTGTGGCCGATGGTCAAGG+AGG | + | chr8_3:4015632-4015651 | Msa1270680:intron | 55.0% | |
| CCGGAATCCTCCTTGACCAT+CGG | - | chr8_3:4015642-4015661 | None:intergenic | 55.0% | |
| CCGATGGTCAAGGAGGATTC+CGG | + | chr8_3:4015639-4015658 | Msa1270680:intron | 55.0% | |
| CGCAAGGCTCTCATCATTGC+AGG | - | chr8_3:4015717-4015736 | None:intergenic | 55.0% | |
| CCAGCCACAACCTACATGCA+AGG | - | chr8_3:4016042-4016061 | None:intergenic | 55.0% | |
| CCTTGCATGTAGGTTGTGGC+TGG | + | chr8_3:4016039-4016058 | Msa1270680:intron | 55.0% | |
| GTTGCTCCAGCAATGGCTGC+TGG | + | chr8_3:4015147-4015166 | Msa1270680:CDS | 60.0% | |
| ! | CAATGGCTGCTGGTGCTGGA+GGG | + | chr8_3:4015157-4015176 | Msa1270680:CDS | 60.0% |
| ! | AATGGCTGCTGGTGCTGGAG+GGG | + | chr8_3:4015158-4015177 | Msa1270680:CDS | 60.0% |
| CCAGCACCAGCAGCCATTGC+TGG | - | chr8_3:4015156-4015175 | None:intergenic | 65.0% | |
| CCAGCAATGGCTGCTGGTGC+TGG | + | chr8_3:4015153-4015172 | Msa1270680:CDS | 65.0% | |
| ! | GCAATGGCTGCTGGTGCTGG+AGG | + | chr8_3:4015156-4015175 | Msa1270680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 4013931 | 4017273 | 4013931 | ID=Msa1270680;Name=Msa1270680 |
| chr8_3 | mRNA | 4013931 | 4017273 | 4013931 | ID=Msa1270680-mRNA-1;Parent=Msa1270680;Name=Msa1270680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=120|0.83|0.85|1|0.5|0.85|7|344|176 |
| chr8_3 | exon | 4013931 | 4014088 | 4013931 | ID=Msa1270680-mRNA-1:exon:1307;Parent=Msa1270680-mRNA-1 |
| chr8_3 | exon | 4014370 | 4014455 | 4014370 | ID=Msa1270680-mRNA-1:exon:1308;Parent=Msa1270680-mRNA-1 |
| chr8_3 | exon | 4014655 | 4014738 | 4014655 | ID=Msa1270680-mRNA-1:exon:1309;Parent=Msa1270680-mRNA-1 |
| chr8_3 | exon | 4015088 | 4015179 | 4015088 | ID=Msa1270680-mRNA-1:exon:1310;Parent=Msa1270680-mRNA-1 |
| chr8_3 | exon | 4016051 | 4016131 | 4016051 | ID=Msa1270680-mRNA-1:exon:1311;Parent=Msa1270680-mRNA-1 |
| chr8_3 | exon | 4016434 | 4016507 | 4016434 | ID=Msa1270680-mRNA-1:exon:1312;Parent=Msa1270680-mRNA-1 |
| chr8_3 | exon | 4016854 | 4017273 | 4016854 | ID=Msa1270680-mRNA-1:exon:1313;Parent=Msa1270680-mRNA-1 |
| chr8_3 | five_prime_UTR | 4013931 | 4014050 | 4013931 | ID=Msa1270680-mRNA-1:five_prime_utr;Parent=Msa1270680-mRNA-1 |
| chr8_3 | CDS | 4014051 | 4014088 | 4014051 | ID=Msa1270680-mRNA-1:cds;Parent=Msa1270680-mRNA-1 |
| chr8_3 | CDS | 4014370 | 4014455 | 4014370 | ID=Msa1270680-mRNA-1:cds;Parent=Msa1270680-mRNA-1 |
| chr8_3 | CDS | 4014655 | 4014738 | 4014655 | ID=Msa1270680-mRNA-1:cds;Parent=Msa1270680-mRNA-1 |
| chr8_3 | CDS | 4015088 | 4015179 | 4015088 | ID=Msa1270680-mRNA-1:cds;Parent=Msa1270680-mRNA-1 |
| chr8_3 | CDS | 4016051 | 4016131 | 4016051 | ID=Msa1270680-mRNA-1:cds;Parent=Msa1270680-mRNA-1 |
| chr8_3 | CDS | 4016434 | 4016507 | 4016434 | ID=Msa1270680-mRNA-1:cds;Parent=Msa1270680-mRNA-1 |
| chr8_3 | CDS | 4016854 | 4016929 | 4016854 | ID=Msa1270680-mRNA-1:cds;Parent=Msa1270680-mRNA-1 |
| chr8_3 | three_prime_UTR | 4016930 | 4017273 | 4016930 | ID=Msa1270680-mRNA-1:three_prime_utr;Parent=Msa1270680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
