AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0708520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708520 MtrunA17_Chr8g0348181 59.398 133 2 1 2 82 97 229 2.11e-45 145
Msa0708520 MtrunA17_Chr8g0379601 59.398 133 2 1 2 82 97 229 2.31e-44 142
Msa0708520 MtrunA17_Chr7g0275751 53.906 128 12 1 1 81 49 176 1.61e-30 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708520 AT1G14620.1 45.113 133 21 1 2 82 101 233 4.69e-31 108
Msa0708520 AT1G14620.2 69.444 36 11 0 2 37 101 136 3.54e-11 57.0

Find 32 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTTGGTGATGCTTA+TGG 0.132920 4_4:-82085545 Msa0708520:CDS
AAGATGAATGTAACAGTTTC+TGG 0.157299 4_4:-82084590 Msa0708520:three_prime_UTR
TTCTCTTTGGTGATGCTTAT+GGG 0.201628 4_4:-82085544 Msa0708520:CDS
ATGGACAACAGCTGCAAAAT+TGG 0.238557 4_4:+82084400 None:intergenic
AGACTTTACCTTCTTCTCTT+TGG 0.302982 4_4:-82085557 Msa0708520:CDS
AGAAATAAGTTTCTAAATAA+TGG 0.304201 4_4:+82084515 None:intergenic
CTGGGGTGTCAGCTGTATTT+TGG 0.309094 4_4:-82084483 Msa0708520:three_prime_UTR
CTCACCAACTAGTCTTGTTC+TGG 0.373382 4_4:-82084357 Msa0708520:three_prime_UTR
GCAAATGTGAGGACTTTGTT+TGG 0.413949 4_4:-82084743 Msa0708520:CDS
CAAATGTGAGGACTTTGTTT+GGG 0.420934 4_4:-82084742 Msa0708520:CDS
ACTTATTTCTACTTGTCAGC+TGG 0.422220 4_4:-82084502 Msa0708520:three_prime_UTR
CTTATTTCTACTTGTCAGCT+GGG 0.422402 4_4:-82084501 Msa0708520:three_prime_UTR
GGTGACTAAGGATGAATTGA+TGG 0.429874 4_4:-82084721 Msa0708520:CDS
CCTCTTTAGGTCACTACAAA+GGG 0.467960 4_4:-82085591 Msa0708520:intron
AGATTTAACATCTCAGTTTG+AGG 0.468034 4_4:-82084538 Msa0708520:three_prime_UTR
GGACTTTGTTTGGGTGACTA+AGG 0.476258 4_4:-82084733 Msa0708520:CDS
GACACCAGAACAAGACTAGT+TGG 0.476630 4_4:+82084353 None:intergenic
AGATGAATGTAACAGTTTCT+GGG 0.482354 4_4:-82084589 Msa0708520:three_prime_UTR
TGCCACACAGGCTTTCCACT+TGG 0.491497 4_4:+82085518 None:intergenic
TCTCTTTGGTGATGCTTATG+GGG 0.506698 4_4:-82085543 Msa0708520:CDS
AAGCATCACCAAAGAGAAGA+AGG 0.518933 4_4:+82085549 None:intergenic
CAGTTTCTGGGATCAACAAA+AGG 0.522385 4_4:-82084577 Msa0708520:three_prime_UTR
GCCTCTTTAGGTCACTACAA+AGG 0.536519 4_4:-82085592 Msa0708520:intron
CTCCAAGTGGAAAGCCTGTG+TGG 0.603277 4_4:-82085520 Msa0708520:CDS
TTAGCTGATGACAGTGGAGA+TGG 0.612732 4_4:-82084656 Msa0708520:exon
TTATTTCTACTTGTCAGCTG+GGG 0.652398 4_4:-82084500 Msa0708520:three_prime_UTR
TAGCTAATAAGATATATCCA+TGG 0.660295 4_4:+82084381 None:intergenic
GTTCGACATTGGCAAATGTG+AGG 0.661270 4_4:-82084754 Msa0708520:CDS
TGATCATTAGCTGATGACAG+TGG 0.681415 4_4:-82084662 Msa0708520:exon
GATGCTTATGGGGCTCCAAG+TGG 0.683285 4_4:-82085533 Msa0708520:CDS
TCTCAACATCATAATCACCA+TGG 0.689052 4_4:+82084432 None:intergenic
GCTGTAATAACAAGTTGCCA+TGG 0.705966 4_4:-82084449 Msa0708520:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTAAAAAAAATTATCAA+TGG + chr4_4:82084871-82084890 None:intergenic 10.0%
!!! TGCAATTTTTTTTATAAAAA+AGG + chr4_4:82085361-82085380 None:intergenic 10.0%
!!! TCTTTAAAAAAAATTATCAA+TGG + chr4_4:82084871-82084890 None:intergenic 10.0%
!!! TGCAATTTTTTTTATAAAAA+AGG + chr4_4:82085361-82085380 None:intergenic 10.0%
!!! TTTCAATATGTTATTTCTAT+CGG - chr4_4:82085563-82085582 Msa0708520:CDS 15.0%
!! AGAAATAAGTTTCTAAATAA+TGG + chr4_4:82086026-82086045 None:intergenic 15.0%
!!! TTTCAATATGTTATTTCTAT+CGG - chr4_4:82085563-82085582 Msa0708520:CDS 15.0%
!! AGAAATAAGTTTCTAAATAA+TGG + chr4_4:82086026-82086045 None:intergenic 15.0%
!! AGAACAAGTTAATAATTCAT+TGG + chr4_4:82084413-82084432 None:intergenic 20.0%
!!! TCTTTTCTTCTTTTTTTTGA+AGG - chr4_4:82084476-82084495 Msa0708520:three_prime_UTR 20.0%
!!! CTTTCAAATACATATTTTGT+CGG - chr4_4:82085418-82085437 Msa0708520:intron 20.0%
!! AGAACAAGTTAATAATTCAT+TGG + chr4_4:82084413-82084432 None:intergenic 20.0%
!!! TCTTTTCTTCTTTTTTTTGA+AGG - chr4_4:82084476-82084495 Msa0708520:three_prime_UTR 20.0%
!!! CTTTCAAATACATATTTTGT+CGG - chr4_4:82085418-82085437 Msa0708520:intron 20.0%
!!! TTCTTCTTTTTTTTGAAGGA+AGG - chr4_4:82084480-82084499 Msa0708520:three_prime_UTR 25.0%
! ACACGATCAAAAAACAATAA+AGG + chr4_4:82084590-82084609 None:intergenic 25.0%
!!! GTGTTTTAGCTTTGAAATAT+TGG - chr4_4:82084606-82084625 Msa0708520:three_prime_UTR 25.0%
! AGATTGTCATCAGATATTTA+AGG - chr4_4:82084650-82084669 Msa0708520:three_prime_UTR 25.0%
! TGAGAAATATATCAATGTGA+GGG - chr4_4:82084743-82084762 Msa0708520:CDS 25.0%
! TCTATTATTATCTAAGAGAC+AGG + chr4_4:82084788-82084807 None:intergenic 25.0%
! ATTATCAATGGTAAAGCAAA+TGG + chr4_4:82084859-82084878 None:intergenic 25.0%
!!! TCTGATTCATATACTTTTTC+TGG + chr4_4:82085050-82085069 None:intergenic 25.0%
!! AGAAAAAGTATATGAATCAG+AGG - chr4_4:82085049-82085068 Msa0708520:intron 25.0%
! AAGATATAGGAAATAAGAAG+GGG + chr4_4:82085111-82085130 None:intergenic 25.0%
! GAAGATATAGGAAATAAGAA+GGG + chr4_4:82085112-82085131 None:intergenic 25.0%
!!! ATCTTTTAAGGTATGTTTGT+AGG - chr4_4:82085498-82085517 Msa0708520:intron 25.0%
!!! TTTTCTGAAAATGACTTTGT+AGG - chr4_4:82085598-82085617 Msa0708520:intron 25.0%
!!! ATAAGTCAGAAGTATTGAAA+AGG + chr4_4:82085667-82085686 None:intergenic 25.0%
! GAATTTCTGACAAAAGATTT+GGG + chr4_4:82085732-82085751 None:intergenic 25.0%
! AGAATTTCTGACAAAAGATT+TGG + chr4_4:82085733-82085752 None:intergenic 25.0%
! TAGCTAATAAGATATATCCA+TGG + chr4_4:82086160-82086179 None:intergenic 25.0%
!!! TTCTTCTTTTTTTTGAAGGA+AGG - chr4_4:82084480-82084499 Msa0708520:three_prime_UTR 25.0%
! ACACGATCAAAAAACAATAA+AGG + chr4_4:82084590-82084609 None:intergenic 25.0%
!!! GTGTTTTAGCTTTGAAATAT+TGG - chr4_4:82084606-82084625 Msa0708520:three_prime_UTR 25.0%
! AGATTGTCATCAGATATTTA+AGG - chr4_4:82084650-82084669 Msa0708520:three_prime_UTR 25.0%
! TGAGAAATATATCAATGTGA+GGG - chr4_4:82084743-82084762 Msa0708520:CDS 25.0%
! TCTATTATTATCTAAGAGAC+AGG + chr4_4:82084788-82084807 None:intergenic 25.0%
! ATTATCAATGGTAAAGCAAA+TGG + chr4_4:82084859-82084878 None:intergenic 25.0%
!!! TCTGATTCATATACTTTTTC+TGG + chr4_4:82085050-82085069 None:intergenic 25.0%
!! AGAAAAAGTATATGAATCAG+AGG - chr4_4:82085049-82085068 Msa0708520:intron 25.0%
! AAGATATAGGAAATAAGAAG+GGG + chr4_4:82085111-82085130 None:intergenic 25.0%
! GAAGATATAGGAAATAAGAA+GGG + chr4_4:82085112-82085131 None:intergenic 25.0%
!!! ATCTTTTAAGGTATGTTTGT+AGG - chr4_4:82085498-82085517 Msa0708520:intron 25.0%
!!! TTTTCTGAAAATGACTTTGT+AGG - chr4_4:82085598-82085617 Msa0708520:intron 25.0%
!!! ATAAGTCAGAAGTATTGAAA+AGG + chr4_4:82085667-82085686 None:intergenic 25.0%
! GAATTTCTGACAAAAGATTT+GGG + chr4_4:82085732-82085751 None:intergenic 25.0%
! AGAATTTCTGACAAAAGATT+TGG + chr4_4:82085733-82085752 None:intergenic 25.0%
! TAGCTAATAAGATATATCCA+TGG + chr4_4:82086160-82086179 None:intergenic 25.0%
!!! GGAAAATGTCCTTTTTTCTT+TGG - chr4_4:82084501-82084520 Msa0708520:three_prime_UTR 30.0%
AATACCACACCAAAGAAAAA+AGG + chr4_4:82084513-82084532 None:intergenic 30.0%
ACTACAAATGTTCTTAAGCA+AGG - chr4_4:82084534-82084553 Msa0708520:three_prime_UTR 30.0%
CTGAGAAATATATCAATGTG+AGG - chr4_4:82084742-82084761 Msa0708520:CDS 30.0%
AGAGACATGAAAACCTAATT+AGG - chr4_4:82084833-82084852 Msa0708520:intron 30.0%
GGAAGATATAGGAAATAAGA+AGG + chr4_4:82085113-82085132 None:intergenic 30.0%
TTAACAACACTGGAAGATAT+AGG + chr4_4:82085124-82085143 None:intergenic 30.0%
CTATAGATATATCATCGCTA+AGG + chr4_4:82085154-82085173 None:intergenic 30.0%
TTGCAGATTACAGAAAATAG+TGG + chr4_4:82085306-82085325 None:intergenic 30.0%
TTTAGGCTGAACAACAATAT+GGG + chr4_4:82085458-82085477 None:intergenic 30.0%
!! TTATTTCTATCGGTATGTGT+CGG - chr4_4:82085573-82085592 Msa0708520:CDS 30.0%
CACAACCAAACAAATTGAAA+AGG + chr4_4:82085624-82085643 None:intergenic 30.0%
!!! AGTATTGAAAAGGCTAGTTT+TGG + chr4_4:82085657-82085676 None:intergenic 30.0%
GCAAGTATAATGAATTTCCA+CGG + chr4_4:82085694-82085713 None:intergenic 30.0%
AAGATGAATGTAACAGTTTC+TGG - chr4_4:82085948-82085967 Msa0708520:intron 30.0%
AGATGAATGTAACAGTTTCT+GGG - chr4_4:82085949-82085968 Msa0708520:intron 30.0%
AGATTTAACATCTCAGTTTG+AGG - chr4_4:82086000-82086019 Msa0708520:intron 30.0%
!!! GGAAAATGTCCTTTTTTCTT+TGG - chr4_4:82084501-82084520 Msa0708520:three_prime_UTR 30.0%
AATACCACACCAAAGAAAAA+AGG + chr4_4:82084513-82084532 None:intergenic 30.0%
ACTACAAATGTTCTTAAGCA+AGG - chr4_4:82084534-82084553 Msa0708520:three_prime_UTR 30.0%
CTGAGAAATATATCAATGTG+AGG - chr4_4:82084742-82084761 Msa0708520:CDS 30.0%
AGAGACATGAAAACCTAATT+AGG - chr4_4:82084833-82084852 Msa0708520:intron 30.0%
GGAAGATATAGGAAATAAGA+AGG + chr4_4:82085113-82085132 None:intergenic 30.0%
TTAACAACACTGGAAGATAT+AGG + chr4_4:82085124-82085143 None:intergenic 30.0%
CTATAGATATATCATCGCTA+AGG + chr4_4:82085154-82085173 None:intergenic 30.0%
TTGCAGATTACAGAAAATAG+TGG + chr4_4:82085306-82085325 None:intergenic 30.0%
TTTAGGCTGAACAACAATAT+GGG + chr4_4:82085458-82085477 None:intergenic 30.0%
!! TTATTTCTATCGGTATGTGT+CGG - chr4_4:82085573-82085592 Msa0708520:CDS 30.0%
CACAACCAAACAAATTGAAA+AGG + chr4_4:82085624-82085643 None:intergenic 30.0%
!!! AGTATTGAAAAGGCTAGTTT+TGG + chr4_4:82085657-82085676 None:intergenic 30.0%
GCAAGTATAATGAATTTCCA+CGG + chr4_4:82085694-82085713 None:intergenic 30.0%
AAGATGAATGTAACAGTTTC+TGG - chr4_4:82085948-82085967 Msa0708520:intron 30.0%
AGATGAATGTAACAGTTTCT+GGG - chr4_4:82085949-82085968 Msa0708520:intron 30.0%
AGATTTAACATCTCAGTTTG+AGG - chr4_4:82086000-82086019 Msa0708520:intron 30.0%
!!! ATGTCCTTTTTTCTTTGGTG+TGG - chr4_4:82084506-82084525 Msa0708520:three_prime_UTR 35.0%
AAATATATCAATGTGAGGGC+AGG - chr4_4:82084747-82084766 Msa0708520:CDS 35.0%
TATTATCTAAGAGACAGGAG+AGG + chr4_4:82084783-82084802 None:intergenic 35.0%
GTAAAGCAAATGGCCTAATT+AGG + chr4_4:82084849-82084868 None:intergenic 35.0%
CTCTTATTACTTGCCTCTTT+AGG - chr4_4:82084934-82084953 Msa0708520:intron 35.0%
AGACTTTACCTTCTTCTCTT+TGG - chr4_4:82084981-82085000 Msa0708520:intron 35.0%
!! TTCTCTTTGGTGATGCTTAT+GGG - chr4_4:82084994-82085013 Msa0708520:intron 35.0%
GTAAGGTGAACATTCTTATG+TGG - chr4_4:82085081-82085100 Msa0708520:intron 35.0%
TCGTCATATAGTTGCTATAG+TGG - chr4_4:82085237-82085256 Msa0708520:intron 35.0%
! ATCTCCTAAGACTGATTTCA+AGG + chr4_4:82085398-82085417 None:intergenic 35.0%
CTTTAGGCTGAACAACAATA+TGG + chr4_4:82085459-82085478 None:intergenic 35.0%
! GACAGGATCAACATCTTTTA+AGG - chr4_4:82085486-82085505 Msa0708520:intron 35.0%
AACTTCAATCTACTGTTGGA+AGG - chr4_4:82085532-82085551 Msa0708520:CDS 35.0%
!! GTAGGCCTTTTCAATTTGTT+TGG - chr4_4:82085616-82085635 Msa0708520:intron 35.0%
CTGACAAAAGATTTGGGTAA+AGG + chr4_4:82085726-82085745 None:intergenic 35.0%
GCTAAAAACAAGTTCGACAT+TGG - chr4_4:82085773-82085792 Msa0708520:intron 35.0%
! CAAATGTGAGGACTTTGTTT+GGG - chr4_4:82085796-82085815 Msa0708520:intron 35.0%
! TTTAAAAACTCAGCTTGCTC+AGG + chr4_4:82085851-82085870 None:intergenic 35.0%
!! ACTTATTTCTACTTGTCAGC+TGG - chr4_4:82086036-82086055 Msa0708520:intron 35.0%
!! CTTATTTCTACTTGTCAGCT+GGG - chr4_4:82086037-82086056 Msa0708520:intron 35.0%
!! TTATTTCTACTTGTCAGCTG+GGG - chr4_4:82086038-82086057 Msa0708520:intron 35.0%
TCTCAACATCATAATCACCA+TGG + chr4_4:82086109-82086128 None:intergenic 35.0%
!!! ATGTCCTTTTTTCTTTGGTG+TGG - chr4_4:82084506-82084525 Msa0708520:three_prime_UTR 35.0%
AAATATATCAATGTGAGGGC+AGG - chr4_4:82084747-82084766 Msa0708520:CDS 35.0%
TATTATCTAAGAGACAGGAG+AGG + chr4_4:82084783-82084802 None:intergenic 35.0%
GTAAAGCAAATGGCCTAATT+AGG + chr4_4:82084849-82084868 None:intergenic 35.0%
CTCTTATTACTTGCCTCTTT+AGG - chr4_4:82084934-82084953 Msa0708520:intron 35.0%
AGACTTTACCTTCTTCTCTT+TGG - chr4_4:82084981-82085000 Msa0708520:intron 35.0%
!! TTCTCTTTGGTGATGCTTAT+GGG - chr4_4:82084994-82085013 Msa0708520:intron 35.0%
GTAAGGTGAACATTCTTATG+TGG - chr4_4:82085081-82085100 Msa0708520:intron 35.0%
TCGTCATATAGTTGCTATAG+TGG - chr4_4:82085237-82085256 Msa0708520:intron 35.0%
! ATCTCCTAAGACTGATTTCA+AGG + chr4_4:82085398-82085417 None:intergenic 35.0%
CTTTAGGCTGAACAACAATA+TGG + chr4_4:82085459-82085478 None:intergenic 35.0%
! GACAGGATCAACATCTTTTA+AGG - chr4_4:82085486-82085505 Msa0708520:intron 35.0%
AACTTCAATCTACTGTTGGA+AGG - chr4_4:82085532-82085551 Msa0708520:CDS 35.0%
!! GTAGGCCTTTTCAATTTGTT+TGG - chr4_4:82085616-82085635 Msa0708520:intron 35.0%
CTGACAAAAGATTTGGGTAA+AGG + chr4_4:82085726-82085745 None:intergenic 35.0%
GCTAAAAACAAGTTCGACAT+TGG - chr4_4:82085773-82085792 Msa0708520:intron 35.0%
! CAAATGTGAGGACTTTGTTT+GGG - chr4_4:82085796-82085815 Msa0708520:intron 35.0%
! TTTAAAAACTCAGCTTGCTC+AGG + chr4_4:82085851-82085870 None:intergenic 35.0%
!! ACTTATTTCTACTTGTCAGC+TGG - chr4_4:82086036-82086055 Msa0708520:intron 35.0%
!! CTTATTTCTACTTGTCAGCT+GGG - chr4_4:82086037-82086056 Msa0708520:intron 35.0%
!! TTATTTCTACTTGTCAGCTG+GGG - chr4_4:82086038-82086057 Msa0708520:intron 35.0%
TCTCAACATCATAATCACCA+TGG + chr4_4:82086109-82086128 None:intergenic 35.0%
ATATTGTCCTCGTCTTCCTT+TGG - chr4_4:82084434-82084453 Msa0708520:three_prime_UTR 40.0%
AAGACTGAACATGCACTAAC+AGG + chr4_4:82084686-82084705 None:intergenic 40.0%
CTTCAGAGATAATTGCTGTG+TGG - chr4_4:82084902-82084921 Msa0708520:intron 40.0%
CCTCTTTAGGTCACTACAAA+GGG - chr4_4:82084947-82084966 Msa0708520:intron 40.0%
AAGCATCACCAAAGAGAAGA+AGG + chr4_4:82084992-82085011 None:intergenic 40.0%
!! CTTCTCTTTGGTGATGCTTA+TGG - chr4_4:82084993-82085012 Msa0708520:intron 40.0%
!! TCTCTTTGGTGATGCTTATG+GGG - chr4_4:82084995-82085014 Msa0708520:intron 40.0%
!! TTTTCTGGAAAATGCCACAC+AGG + chr4_4:82085035-82085054 None:intergenic 40.0%
AAGAATGTTCACCTTACGCA+TGG + chr4_4:82085078-82085097 None:intergenic 40.0%
! AGGCTGCTATTTAACAACAC+TGG + chr4_4:82085134-82085153 None:intergenic 40.0%
CCTATAGCACTATTGCATAG+CGG - chr4_4:82085268-82085287 Msa0708520:intron 40.0%
TCTGCCTTGAAATCAGTCTT+AGG - chr4_4:82085391-82085410 Msa0708520:intron 40.0%
TGAACAACAATATGGGCCAT+CGG + chr4_4:82085451-82085470 None:intergenic 40.0%
GCGTAACTTCAATCTACTGT+TGG - chr4_4:82085528-82085547 Msa0708520:CDS 40.0%
! ACTTCTGACTTATTTCTCCG+TGG - chr4_4:82085674-82085693 Msa0708520:intron 40.0%
GCAAATGTGAGGACTTTGTT+TGG - chr4_4:82085795-82085814 Msa0708520:intron 40.0%
GGTGACTAAGGATGAATTGA+TGG - chr4_4:82085817-82085836 Msa0708520:intron 40.0%
TGATCATTAGCTGATGACAG+TGG - chr4_4:82085876-82085895 Msa0708520:intron 40.0%
!! CAGTTTCTGGGATCAACAAA+AGG - chr4_4:82085961-82085980 Msa0708520:intron 40.0%
GCTGTAATAACAAGTTGCCA+TGG - chr4_4:82086089-82086108 Msa0708520:intron 40.0%
ATGGACAACAGCTGCAAAAT+TGG + chr4_4:82086141-82086160 None:intergenic 40.0%
! AATTTTGCAGCTGTTGTCCA+TGG - chr4_4:82086140-82086159 Msa0708520:intron 40.0%
ATATTGTCCTCGTCTTCCTT+TGG - chr4_4:82084434-82084453 Msa0708520:three_prime_UTR 40.0%
AAGACTGAACATGCACTAAC+AGG + chr4_4:82084686-82084705 None:intergenic 40.0%
CTTCAGAGATAATTGCTGTG+TGG - chr4_4:82084902-82084921 Msa0708520:intron 40.0%
CCTCTTTAGGTCACTACAAA+GGG - chr4_4:82084947-82084966 Msa0708520:intron 40.0%
AAGCATCACCAAAGAGAAGA+AGG + chr4_4:82084992-82085011 None:intergenic 40.0%
!! CTTCTCTTTGGTGATGCTTA+TGG - chr4_4:82084993-82085012 Msa0708520:intron 40.0%
!! TCTCTTTGGTGATGCTTATG+GGG - chr4_4:82084995-82085014 Msa0708520:intron 40.0%
!! TTTTCTGGAAAATGCCACAC+AGG + chr4_4:82085035-82085054 None:intergenic 40.0%
AAGAATGTTCACCTTACGCA+TGG + chr4_4:82085078-82085097 None:intergenic 40.0%
! AGGCTGCTATTTAACAACAC+TGG + chr4_4:82085134-82085153 None:intergenic 40.0%
CCTATAGCACTATTGCATAG+CGG - chr4_4:82085268-82085287 Msa0708520:intron 40.0%
TCTGCCTTGAAATCAGTCTT+AGG - chr4_4:82085391-82085410 Msa0708520:intron 40.0%
TGAACAACAATATGGGCCAT+CGG + chr4_4:82085451-82085470 None:intergenic 40.0%
GCGTAACTTCAATCTACTGT+TGG - chr4_4:82085528-82085547 Msa0708520:CDS 40.0%
! ACTTCTGACTTATTTCTCCG+TGG - chr4_4:82085674-82085693 Msa0708520:intron 40.0%
GCAAATGTGAGGACTTTGTT+TGG - chr4_4:82085795-82085814 Msa0708520:intron 40.0%
GGTGACTAAGGATGAATTGA+TGG - chr4_4:82085817-82085836 Msa0708520:intron 40.0%
TGATCATTAGCTGATGACAG+TGG - chr4_4:82085876-82085895 Msa0708520:intron 40.0%
!! CAGTTTCTGGGATCAACAAA+AGG - chr4_4:82085961-82085980 Msa0708520:intron 40.0%
GCTGTAATAACAAGTTGCCA+TGG - chr4_4:82086089-82086108 Msa0708520:intron 40.0%
ATGGACAACAGCTGCAAAAT+TGG + chr4_4:82086141-82086160 None:intergenic 40.0%
! AATTTTGCAGCTGTTGTCCA+TGG - chr4_4:82086140-82086159 Msa0708520:intron 40.0%
ATGACATTTGCTCGCTCCAA+AGG + chr4_4:82084453-82084472 None:intergenic 45.0%
TATCAATGTGAGGGCAGGAT+AGG - chr4_4:82084752-82084771 Msa0708520:CDS 45.0%
TCTAAGAGACAGGAGAGGAT+TGG + chr4_4:82084778-82084797 None:intergenic 45.0%
GCCTCTTTAGGTCACTACAA+AGG - chr4_4:82084946-82084965 Msa0708520:intron 45.0%
CCCTTTGTAGTGACCTAAAG+AGG + chr4_4:82084950-82084969 None:intergenic 45.0%
ATCAGAGGATACCATGCGTA+AGG - chr4_4:82085064-82085083 Msa0708520:intron 45.0%
CCGCTATGCAATAGTGCTAT+AGG + chr4_4:82085271-82085290 None:intergenic 45.0%
! TTTTGTCGGAAATGCTCCGA+TGG - chr4_4:82085432-82085451 Msa0708520:intron 45.0%
GATCCTGTCTGCTCTTCTTT+AGG + chr4_4:82085475-82085494 None:intergenic 45.0%
GTTCGACATTGGCAAATGTG+AGG - chr4_4:82085784-82085803 Msa0708520:intron 45.0%
! GGACTTTGTTTGGGTGACTA+AGG - chr4_4:82085805-82085824 Msa0708520:intron 45.0%
TTAGCTGATGACAGTGGAGA+TGG - chr4_4:82085882-82085901 Msa0708520:intron 45.0%
!! CTCACCAACTAGTCTTGTTC+TGG - chr4_4:82086181-82086200 Msa0708520:intron 45.0%
GACACCAGAACAAGACTAGT+TGG + chr4_4:82086188-82086207 None:intergenic 45.0%
ATGACATTTGCTCGCTCCAA+AGG + chr4_4:82084453-82084472 None:intergenic 45.0%
TATCAATGTGAGGGCAGGAT+AGG - chr4_4:82084752-82084771 Msa0708520:CDS 45.0%
TCTAAGAGACAGGAGAGGAT+TGG + chr4_4:82084778-82084797 None:intergenic 45.0%
GCCTCTTTAGGTCACTACAA+AGG - chr4_4:82084946-82084965 Msa0708520:intron 45.0%
CCCTTTGTAGTGACCTAAAG+AGG + chr4_4:82084950-82084969 None:intergenic 45.0%
ATCAGAGGATACCATGCGTA+AGG - chr4_4:82085064-82085083 Msa0708520:intron 45.0%
CCGCTATGCAATAGTGCTAT+AGG + chr4_4:82085271-82085290 None:intergenic 45.0%
! TTTTGTCGGAAATGCTCCGA+TGG - chr4_4:82085432-82085451 Msa0708520:intron 45.0%
GATCCTGTCTGCTCTTCTTT+AGG + chr4_4:82085475-82085494 None:intergenic 45.0%
GTTCGACATTGGCAAATGTG+AGG - chr4_4:82085784-82085803 Msa0708520:intron 45.0%
! GGACTTTGTTTGGGTGACTA+AGG - chr4_4:82085805-82085824 Msa0708520:intron 45.0%
TTAGCTGATGACAGTGGAGA+TGG - chr4_4:82085882-82085901 Msa0708520:intron 45.0%
!! CTCACCAACTAGTCTTGTTC+TGG - chr4_4:82086181-82086200 Msa0708520:intron 45.0%
GACACCAGAACAAGACTAGT+TGG + chr4_4:82086188-82086207 None:intergenic 45.0%
CAGCCTAAAGAAGAGCAGAC+AGG - chr4_4:82085469-82085488 Msa0708520:intron 50.0%
!! CTGGGGTGTCAGCTGTATTT+TGG - chr4_4:82086055-82086074 Msa0708520:intron 50.0%
CAGCCTAAAGAAGAGCAGAC+AGG - chr4_4:82085469-82085488 Msa0708520:intron 50.0%
!! CTGGGGTGTCAGCTGTATTT+TGG - chr4_4:82086055-82086074 Msa0708520:intron 50.0%
GATGCTTATGGGGCTCCAAG+TGG - chr4_4:82085005-82085024 Msa0708520:intron 55.0%
CTCCAAGTGGAAAGCCTGTG+TGG - chr4_4:82085018-82085037 Msa0708520:intron 55.0%
TGCCACACAGGCTTTCCACT+TGG + chr4_4:82085023-82085042 None:intergenic 55.0%
GATGCTTATGGGGCTCCAAG+TGG - chr4_4:82085005-82085024 Msa0708520:intron 55.0%
CTCCAAGTGGAAAGCCTGTG+TGG - chr4_4:82085018-82085037 Msa0708520:intron 55.0%
TGCCACACAGGCTTTCCACT+TGG + chr4_4:82085023-82085042 None:intergenic 55.0%
GCTCGCTCCAAAGGAAGACG+AGG + chr4_4:82084444-82084463 None:intergenic 60.0%
GCTCGCTCCAAAGGAAGACG+AGG + chr4_4:82084444-82084463 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 82084336 82086224 82084336 ID=Msa0708520;Name=Msa0708520
chr4_4 mRNA 82084336 82086224 82084336 ID=Msa0708520-mRNA-1;Parent=Msa0708520;Name=Msa0708520-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0.33|0.66|1|1|3|335|82
chr4_4 exon 82084336 82084814 82084336 ID=Msa0708520-mRNA-1:exon:27024;Parent=Msa0708520-mRNA-1
chr4_4 exon 82085505 82085604 82085505 ID=Msa0708520-mRNA-1:exon:27023;Parent=Msa0708520-mRNA-1
chr4_4 exon 82086220 82086224 82086220 ID=Msa0708520-mRNA-1:exon:27022;Parent=Msa0708520-mRNA-1
chr4_4 CDS 82086220 82086224 82086220 ID=Msa0708520-mRNA-1:cds;Parent=Msa0708520-mRNA-1
chr4_4 CDS 82085505 82085604 82085505 ID=Msa0708520-mRNA-1:cds;Parent=Msa0708520-mRNA-1
chr4_4 CDS 82084671 82084814 82084671 ID=Msa0708520-mRNA-1:cds;Parent=Msa0708520-mRNA-1
chr4_4 three_prime_UTR 82084336 82084670 82084336 ID=Msa0708520-mRNA-1:three_prime_utr;Parent=Msa0708520-mRNA-1
Gene Sequence

>Msa0708520

ATGAAGTCACTACAAAGGGCTCTTGATAGAAGACTTTACCTTCTTCTCTTTGGTGATGCTTATGGGGCTCCAAGTGGAAAGCCTGTGTGGCATTTTCCAGAAAAAAAATTCTTCTTCAAATCACAAGTAATTGCTAAAAACAAGTTCGACATTGGCAAATGTGAGGACTTTGTTTGGGTGACTAAGGATGAATTGATGGAGTATTTTCCTGAGCAAGCTGAGTTTTTAAACAAAATGATCATTAGCTGA

Protein sequence

>Msa0708520

MKSLQRALDRRLYLLLFGDAYGAPSGKPVWHFPEKKFFFKSQVIAKNKFDIGKCEDFVWVTKDELMEYFPEQAEFLNKMIIS*