Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795680 | XP_039685446.1 | 62.016 | 129 | 14 | 1 | 2 | 95 | 225 | 353 | 6.09e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795680 | sp|Q56XX3|Y2215_ARATH | 50.725 | 138 | 28 | 3 | 2 | 99 | 179 | 316 | 1.26e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795680 | A0A396GU09 | 62.016 | 129 | 14 | 1 | 2 | 95 | 224 | 352 | 5.35e-38 | 142 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa0795680 | 0.805938 | 1.048358e-49 | -8.615850e-47 |
| Msa0014710 | Msa0795680 | 0.813174 | 2.924828e-51 | -8.615850e-47 |
| Msa0017510 | Msa0795680 | 0.821763 | 3.395695e-53 | -8.615850e-47 |
| Msa0020930 | Msa0795680 | 0.835417 | 1.699122e-56 | -8.615850e-47 |
| Msa0031340 | Msa0795680 | 0.827267 | 1.719752e-54 | -8.615850e-47 |
| Msa0036140 | Msa0795680 | 0.801480 | 8.828620e-49 | -8.615850e-47 |
| Msa0045790 | Msa0795680 | 0.800379 | 1.481396e-48 | -8.615850e-47 |
| Msa0068680 | Msa0795680 | 0.831396 | 1.709569e-55 | -8.615850e-47 |
| Msa0073530 | Msa0795680 | 0.801208 | 1.003397e-48 | -8.615850e-47 |
| Msa0078650 | Msa0795680 | 0.803388 | 3.569842e-49 | -8.615850e-47 |
| Msa0095560 | Msa0795680 | 0.803986 | 2.682225e-49 | -8.615850e-47 |
| Msa0114060 | Msa0795680 | 0.809494 | 1.840192e-50 | -8.615850e-47 |
| Msa0116770 | Msa0795680 | 0.808179 | 3.516946e-50 | -8.615850e-47 |
| Msa0616160 | Msa0795680 | 0.808852 | 2.526627e-50 | -8.615850e-47 |
| Msa0622650 | Msa0795680 | 0.804353 | 2.249900e-49 | -8.615850e-47 |
| Msa0638070 | Msa0795680 | 0.830953 | 2.195815e-55 | -8.615850e-47 |
| Msa0657970 | Msa0795680 | 0.835675 | 1.461788e-56 | -8.615850e-47 |
| Msa0663380 | Msa0795680 | 0.804557 | 2.040688e-49 | -8.615850e-47 |
| Msa0667050 | Msa0795680 | 0.814384 | 1.583688e-51 | -8.615850e-47 |
| Msa0669440 | Msa0795680 | 0.806432 | 8.250065e-50 | -8.615850e-47 |
| Msa0688480 | Msa0795680 | 0.811932 | 5.467797e-51 | -8.615850e-47 |
| Msa0689800 | Msa0795680 | 0.800799 | 1.216354e-48 | -8.615850e-47 |
| Msa0691380 | Msa0795680 | 0.804088 | 2.555372e-49 | -8.615850e-47 |
| Msa0692230 | Msa0795680 | 0.807195 | 5.690959e-50 | -8.615850e-47 |
| Msa0693380 | Msa0795680 | 0.820507 | 6.613127e-53 | -8.615850e-47 |
| Msa0693600 | Msa0795680 | 0.803458 | 3.452222e-49 | -8.615850e-47 |
| Msa0696640 | Msa0795680 | 0.812189 | 4.805575e-51 | -8.615850e-47 |
| Msa0708520 | Msa0795680 | 0.818430 | 1.968571e-52 | -8.615850e-47 |
| Msa0735170 | Msa0795680 | 0.803784 | 2.955565e-49 | -8.615850e-47 |
| Msa0740510 | Msa0795680 | 0.804989 | 1.657728e-49 | -8.615850e-47 |
| Msa0742380 | Msa0795680 | 0.809260 | 2.065676e-50 | -8.615850e-47 |
| Msa0744030 | Msa0795680 | 0.803691 | 3.089341e-49 | -8.615850e-47 |
| Msa0744040 | Msa0795680 | 0.832483 | 9.214049e-56 | -8.615850e-47 |
| Msa0745790 | Msa0795680 | 0.809328 | 1.997430e-50 | -8.615850e-47 |
| Msa0767300 | Msa0795680 | 0.809340 | 1.985981e-50 | -8.615850e-47 |
| Msa0769920 | Msa0795680 | 0.805079 | 1.587139e-49 | -8.615850e-47 |
| Msa0790510 | Msa0795680 | 0.821616 | 3.673536e-53 | -8.615850e-47 |
| Msa0795680 | Msa0796700 | 0.817966 | 2.506671e-52 | -8.615850e-47 |
| Msa0795680 | Msa0820770 | 0.813251 | 2.813085e-51 | -8.615850e-47 |
| Msa0795680 | Msa0824660 | 0.820044 | 8.443862e-53 | -8.615850e-47 |
| Msa0795680 | Msa0825340 | 0.832643 | 8.408275e-56 | -8.615850e-47 |
| Msa0795680 | Msa0828560 | 0.800800 | 1.215933e-48 | -8.615850e-47 |
| Msa0795680 | Msa0828850 | 0.803806 | 2.924659e-49 | -8.615850e-47 |
| Msa0795680 | Msa0829620 | 0.800827 | 1.200406e-48 | -8.615850e-47 |
| Msa0795680 | Msa0856920 | 0.809317 | 2.008436e-50 | -8.615850e-47 |
| Msa0795680 | Msa0861090 | 0.805976 | 1.028898e-49 | -8.615850e-47 |
| Msa0795680 | Msa0867890 | 0.807623 | 4.618174e-50 | -8.615850e-47 |
| Msa0795680 | Msa0869100 | 0.802559 | 5.298232e-49 | -8.615850e-47 |
| Msa0795680 | Msa0876200 | 0.803018 | 4.258807e-49 | -8.615850e-47 |
| Msa0795680 | Msa0880140 | 0.823598 | 1.270750e-53 | -8.615850e-47 |
| Msa0795680 | Msa0880950 | 0.806271 | 8.922352e-50 | -8.615850e-47 |
| Msa0795680 | Msa0895120 | 0.808004 | 3.831392e-50 | -8.615850e-47 |
| Msa0795680 | Msa0933230 | 0.802970 | 4.357892e-49 | -8.615850e-47 |
| Msa0795680 | Msa0933310 | 0.809865 | 1.531849e-50 | -8.615850e-47 |
| Msa0795680 | Msa0935670 | 0.829662 | 4.540833e-55 | -8.615850e-47 |
| Msa0795680 | Msa0938220 | 0.818449 | 1.948641e-52 | -8.615850e-47 |
| Msa0795680 | Msa0944030 | 0.803209 | 3.887746e-49 | -8.615850e-47 |
| Msa0795680 | Msa0945970 | 0.812111 | 4.996311e-51 | -8.615850e-47 |
| Msa0795680 | Msa0969450 | 0.804676 | 1.927222e-49 | -8.615850e-47 |
| Msa0795680 | Msa0969520 | 0.812935 | 3.300380e-51 | -8.615850e-47 |
| Msa0795680 | Msa0971090 | 0.805844 | 1.096880e-49 | -8.615850e-47 |
| Msa0795680 | Msa0978250 | 0.801571 | 8.456927e-49 | -8.615850e-47 |
| Msa0795680 | Msa1004840 | 0.801313 | 9.551859e-49 | -8.615850e-47 |
| Msa0795680 | Msa1029210 | 0.802919 | 4.464069e-49 | -8.615850e-47 |
| Msa0795680 | Msa1045200 | 0.809270 | 2.056007e-50 | -8.615850e-47 |
| Msa0795680 | Msa1063960 | 0.806226 | 9.115986e-50 | -8.615850e-47 |
| Msa0795680 | Msa1079590 | 0.800132 | 1.663489e-48 | -8.615850e-47 |
| Msa0795680 | Msa1082500 | 0.850800 | 1.343042e-60 | -8.615850e-47 |
| Msa0795680 | Msa1085200 | 0.805218 | 1.484164e-49 | -8.615850e-47 |
| Msa0795680 | Msa1087980 | 0.804756 | 1.854139e-49 | -8.615850e-47 |
| Msa0795680 | Msa1098400 | 0.813834 | 2.093966e-51 | -8.615850e-47 |
| Msa0795680 | Msa1098420 | 0.809124 | 2.209474e-50 | -8.615850e-47 |
| Msa0795680 | Msa1111180 | 0.806028 | 1.003691e-49 | -8.615850e-47 |
| Msa0795680 | Msa1127650 | 0.805662 | 1.198020e-49 | -8.615850e-47 |
| Msa0795680 | Msa1131220 | 0.823963 | 1.043369e-53 | -8.615850e-47 |
| Msa0795680 | Msa1147280 | 0.816134 | 6.466350e-52 | -8.615850e-47 |
| Msa0795680 | Msa1151910 | 0.821552 | 3.799240e-53 | -8.615850e-47 |
| Msa0795680 | Msa1165520 | 0.801266 | 9.764914e-49 | -8.615850e-47 |
| Msa0795680 | Msa1172670 | 0.805561 | 1.257974e-49 | -8.615850e-47 |
| Msa0795680 | Msa1174040 | 0.813945 | 1.979517e-51 | -8.615850e-47 |
| Msa0795680 | Msa1194920 | 0.806833 | 6.788325e-50 | -8.615850e-47 |
| Msa0795680 | Msa1239720 | 0.801179 | 1.017476e-48 | -8.615850e-47 |
| Msa0795680 | Msa1250890 | 0.818752 | 1.663470e-52 | -8.615850e-47 |
| Msa0795680 | Msa1270610 | 0.832070 | 1.165832e-55 | -8.615850e-47 |
| Msa0795680 | Msa1270680 | 0.804510 | 2.086519e-49 | -8.615850e-47 |
| Msa0795680 | Msa1297290 | 0.805943 | 1.045736e-49 | -8.615850e-47 |
| Msa0795680 | Msa1300490 | 0.802537 | 5.352591e-49 | -8.615850e-47 |
| Msa0795680 | Msa1306840 | 0.807353 | 5.268276e-50 | -8.615850e-47 |
| Msa0795680 | Msa1314340 | 0.812626 | 3.856935e-51 | -8.615850e-47 |
| Msa0795680 | Msa1327050 | 0.804722 | 1.884916e-49 | -8.615850e-47 |
| Msa0795680 | Msa1329700 | 0.826301 | 2.924720e-54 | -8.615850e-47 |
| Msa0795680 | Msa1331000 | 0.805173 | 1.517100e-49 | -8.615850e-47 |
| Msa0795680 | Msa1340650 | 0.808488 | 3.022480e-50 | -8.615850e-47 |
| Msa0795680 | Msa1342900 | 0.802710 | 4.929733e-49 | -8.615850e-47 |
| Msa0795680 | Msa1346370 | 0.804966 | 1.675663e-49 | -8.615850e-47 |
| Msa0795680 | Msa1348880 | 0.807367 | 5.233242e-50 | -8.615850e-47 |
| Msa0795680 | Msa1353470 | 0.802910 | 4.482159e-49 | -8.615850e-47 |
| Msa0795680 | Msa1353980 | 0.828936 | 6.813525e-55 | -8.615850e-47 |
| Msa0795680 | Msa1357530 | 0.801394 | 9.194170e-49 | -8.615850e-47 |
| Msa0795680 | Msa1359040 | 0.811131 | 8.161738e-51 | -8.615850e-47 |
| Msa0795680 | Msa1372760 | 0.811036 | 8.557463e-51 | -8.615850e-47 |
| Msa0795680 | Msa1384350 | 0.825137 | 5.522478e-54 | -8.615850e-47 |
| Msa0795680 | Msa1385000 | 0.806458 | 8.147499e-50 | -8.615850e-47 |
| Msa0795680 | Msa1392260 | 0.829314 | 5.516786e-55 | -8.615850e-47 |
| Msa0795680 | Msa1409700 | 0.805306 | 1.423000e-49 | -8.615850e-47 |
| Msa0795680 | Msa1409870 | 0.825941 | 3.562028e-54 | -8.615850e-47 |
| Msa0795680 | Msa1411020 | 0.809678 | 1.680618e-50 | -8.615850e-47 |
| Msa0795680 | Msa1424290 | 0.801872 | 7.335974e-49 | -8.615850e-47 |
| Msa0795680 | Msa1427230 | 0.801714 | 7.902107e-49 | -8.615850e-47 |
| Msa0795680 | Msa1429900 | 0.841604 | 4.297482e-58 | -8.615850e-47 |
| Msa0795680 | Msa1434350 | 0.802968 | 4.360516e-49 | -8.615850e-47 |
| Msa0795680 | Msa1436480 | 0.806625 | 7.512739e-50 | -8.615850e-47 |
| Msa0795680 | Msa1439320 | 0.805236 | 1.471548e-49 | -8.615850e-47 |
| Msa0795680 | Msa1452240 | 0.820982 | 5.144311e-53 | -8.615850e-47 |
| Msa0795680 | Msa1454120 | 0.804908 | 1.723065e-49 | -8.615850e-47 |
| Msa0795680 | Msa1460020 | 0.831637 | 1.490719e-55 | -8.615850e-47 |
| Msa0795680 | Msa1461300 | 0.809541 | 1.798075e-50 | -8.615850e-47 |
| Msa0795680 | Msa1463670 | 0.810557 | 1.086152e-50 | -8.615850e-47 |
| Msa0795680 | Msa1464810 | 0.802958 | 4.381562e-49 | -8.615850e-47 |
| Msa0795680 | Msa1466540 | 0.803649 | 3.151381e-49 | -8.615850e-47 |
| Msa0121380 | Msa0795680 | 0.809591 | 1.754077e-50 | -8.615850e-47 |
| Msa0122590 | Msa0795680 | 0.812205 | 4.767485e-51 | -8.615850e-47 |
| Msa0126370 | Msa0795680 | 0.803921 | 2.767994e-49 | -8.615850e-47 |
| Msa0140780 | Msa0795680 | 0.812762 | 3.601690e-51 | -8.615850e-47 |
| Msa0157290 | Msa0795680 | 0.821337 | 4.259947e-53 | -8.615850e-47 |
| Msa0159930 | Msa0795680 | 0.834346 | 3.160613e-56 | -8.615850e-47 |
| Msa0165210 | Msa0795680 | 0.802580 | 5.244420e-49 | -8.615850e-47 |
| Msa0166870 | Msa0795680 | 0.827418 | 1.581578e-54 | -8.615850e-47 |
| Msa0188830 | Msa0795680 | 0.821326 | 4.285113e-53 | -8.615850e-47 |
| Msa0200260 | Msa0795680 | 0.818546 | 1.852367e-52 | -8.615850e-47 |
| Msa0202010 | Msa0795680 | 0.802848 | 4.616487e-49 | -8.615850e-47 |
| Msa0202950 | Msa0795680 | 0.812839 | 3.464120e-51 | -8.615850e-47 |
| Msa0210450 | Msa0795680 | 0.824716 | 6.940917e-54 | -8.615850e-47 |
| Msa0212990 | Msa0795680 | 0.834044 | 3.762292e-56 | -8.615850e-47 |
| Msa0213520 | Msa0795680 | 0.817983 | 2.484327e-52 | -8.615850e-47 |
| Msa0216240 | Msa0795680 | 0.800550 | 1.367181e-48 | -8.615850e-47 |
| Msa0220580 | Msa0795680 | 0.837558 | 4.843289e-57 | -8.615850e-47 |
| Msa0366240 | Msa0795680 | 0.814472 | 1.514265e-51 | -8.615850e-47 |
| Msa0373930 | Msa0795680 | 0.807525 | 4.843924e-50 | -8.615850e-47 |
| Msa0376350 | Msa0795680 | 0.830346 | 3.092542e-55 | -8.615850e-47 |
| Msa0379640 | Msa0795680 | 0.815011 | 1.150081e-51 | -8.615850e-47 |
| Msa0389340 | Msa0795680 | 0.815891 | 7.326603e-52 | -8.615850e-47 |
| Msa0410650 | Msa0795680 | 0.805020 | 1.633181e-49 | -8.615850e-47 |
| Msa0411160 | Msa0795680 | 0.801940 | 7.102775e-49 | -8.615850e-47 |
| Msa0411190 | Msa0795680 | 0.802346 | 5.860246e-49 | -8.615850e-47 |
| Msa0414170 | Msa0795680 | 0.801501 | 8.739547e-49 | -8.615850e-47 |
| Msa0417270 | Msa0795680 | 0.800343 | 1.507091e-48 | -8.615850e-47 |
| Msa0417880 | Msa0795680 | 0.812203 | 4.770149e-51 | -8.615850e-47 |
| Msa0424790 | Msa0795680 | 0.838635 | 2.557532e-57 | -8.615850e-47 |
| Msa0426900 | Msa0795680 | 0.800725 | 1.259773e-48 | -8.615850e-47 |
| Msa0433640 | Msa0795680 | 0.815732 | 7.949631e-52 | -8.615850e-47 |
| Msa0440750 | Msa0795680 | 0.835127 | 2.010490e-56 | -8.615850e-47 |
| Msa0479170 | Msa0795680 | 0.820418 | 6.932145e-53 | -8.615850e-47 |
| Msa0479970 | Msa0795680 | 0.826773 | 2.256526e-54 | -8.615850e-47 |
| Msa0243100 | Msa0795680 | 0.832613 | 8.556448e-56 | -8.615850e-47 |
| Msa0243710 | Msa0795680 | 0.806511 | 7.939986e-50 | -8.615850e-47 |
| Msa0244860 | Msa0795680 | 0.823658 | 1.230078e-53 | -8.615850e-47 |
| Msa0245940 | Msa0795680 | 0.801594 | 8.366798e-49 | -8.615850e-47 |
| Msa0259500 | Msa0795680 | 0.812859 | 3.428512e-51 | -8.615850e-47 |
| Msa0260780 | Msa0795680 | 0.802230 | 6.192567e-49 | -8.615850e-47 |
| Msa0262510 | Msa0795680 | 0.803989 | 2.678627e-49 | -8.615850e-47 |
| Msa0265380 | Msa0795680 | 0.801629 | 8.228049e-49 | -8.615850e-47 |
| Msa0270100 | Msa0795680 | 0.827715 | 1.342000e-54 | -8.615850e-47 |
| Msa0283450 | Msa0795680 | 0.821139 | 4.731271e-53 | -8.615850e-47 |
| Msa0283520 | Msa0795680 | 0.815508 | 8.917936e-52 | -8.615850e-47 |
| Msa0284420 | Msa0795680 | 0.813728 | 2.210085e-51 | -8.615850e-47 |
| Msa0287650 | Msa0795680 | 0.819191 | 1.322165e-52 | -8.615850e-47 |
| Msa0292120 | Msa0795680 | 0.811324 | 7.409900e-51 | -8.615850e-47 |
| Msa0305700 | Msa0795680 | 0.805403 | 1.357528e-49 | -8.615850e-47 |
| Msa0306720 | Msa0795680 | 0.802742 | 4.855470e-49 | -8.615850e-47 |
| Msa0309770 | Msa0795680 | 0.821561 | 3.781389e-53 | -8.615850e-47 |
| Msa0311860 | Msa0795680 | 0.812957 | 3.263562e-51 | -8.615850e-47 |
| Msa0313560 | Msa0795680 | 0.802455 | 5.565648e-49 | -8.615850e-47 |
| Msa0330340 | Msa0795680 | 0.808072 | 3.707325e-50 | -8.615850e-47 |
| Msa0332000 | Msa0795680 | 0.812597 | 3.914260e-51 | -8.615850e-47 |
| Msa0333030 | Msa0795680 | 0.809313 | 2.013104e-50 | -8.615850e-47 |
| Msa0341540 | Msa0795680 | 0.823168 | 1.601262e-53 | -8.615850e-47 |
| Msa0345970 | Msa0795680 | 0.828013 | 1.138355e-54 | -8.615850e-47 |
| Msa0357020 | Msa0795680 | 0.802030 | 6.807274e-49 | -8.615850e-47 |
| Msa0484780 | Msa0795680 | 0.845694 | 3.462191e-59 | -8.615850e-47 |
| Msa0488560 | Msa0795680 | 0.812109 | 5.002834e-51 | -8.615850e-47 |
| Msa0502880 | Msa0795680 | 0.806040 | 9.974975e-50 | -8.615850e-47 |
| Msa0503060 | Msa0795680 | 0.822110 | 2.822374e-53 | -8.615850e-47 |
| Msa0507680 | Msa0795680 | 0.815747 | 7.888990e-52 | -8.615850e-47 |
| Msa0509610 | Msa0795680 | 0.819691 | 1.016992e-52 | -8.615850e-47 |
| Msa0512900 | Msa0795680 | 0.806403 | 8.367328e-50 | -8.615850e-47 |
| Msa0516170 | Msa0795680 | 0.826595 | 2.488862e-54 | -8.615850e-47 |
| Msa0521540 | Msa0795680 | 0.808581 | 2.886217e-50 | -8.615850e-47 |
| Msa0523460 | Msa0795680 | 0.811141 | 8.121541e-51 | -8.615850e-47 |
| Msa0532350 | Msa0795680 | 0.808252 | 3.392664e-50 | -8.615850e-47 |
| Msa0536220 | Msa0795680 | 0.804820 | 1.798011e-49 | -8.615850e-47 |
| Msa0557070 | Msa0795680 | 0.809675 | 1.682724e-50 | -8.615850e-47 |
| Msa0558230 | Msa0795680 | 0.801619 | 8.267458e-49 | -8.615850e-47 |
| Msa0577500 | Msa0795680 | 0.811076 | 8.388558e-51 | -8.615850e-47 |
| Msa0585300 | Msa0795680 | 0.813417 | 2.587456e-51 | -8.615850e-47 |
| Msa0602390 | Msa0795680 | 0.801267 | 9.759065e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795680 | MtrunA17_Chr8g0375221 | 62.016 | 129 | 14 | 1 | 2 | 95 | 224 | 352 | 1.03e-41 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795680 | AT2G02148.2 | 50.725 | 138 | 28 | 3 | 2 | 99 | 179 | 316 | 7.82e-32 | 115 |
| Msa0795680 | AT2G02148.5 | 50.725 | 138 | 28 | 3 | 2 | 99 | 179 | 316 | 1.28e-31 | 115 |
| Msa0795680 | AT2G02148.4 | 50.725 | 138 | 28 | 3 | 2 | 99 | 179 | 316 | 1.28e-31 | 115 |
| Msa0795680 | AT2G02148.1 | 50.725 | 138 | 28 | 3 | 2 | 99 | 179 | 316 | 1.28e-31 | 115 |
| Msa0795680 | AT2G02148.3 | 50.725 | 138 | 28 | 3 | 2 | 99 | 179 | 316 | 1.28e-31 | 115 |
Find 108 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGTCTGTTCATCGAATT+TGG | 0.154476 | 5_3:-7710889 | Msa0795680:three_prime_UTR |
| ACCATGCTTAAAGGGATATA+TGG | 0.165675 | 5_3:+7711196 | None:intergenic |
| AGCATGGTGTTGCCTCATTT+TGG | 0.200305 | 5_3:-7711181 | Msa0795680:CDS |
| ATGAGCTAACGTAAATTTAA+TGG | 0.220731 | 5_3:+7711034 | None:intergenic |
| AAAGGGATATATGGGAAATT+TGG | 0.225227 | 5_3:+7711205 | None:intergenic |
| GTTGATTAGGATGTTGTTTA+AGG | 0.233013 | 5_3:-7712525 | Msa0795680:five_prime_UTR |
| TAAGTGATTCAGTCCTTTAT+AGG | 0.251327 | 5_3:-7710123 | Msa0795680:three_prime_UTR |
| TTCACCTCAGTTTGATTCTC+TGG | 0.263751 | 5_3:-7711091 | Msa0795680:three_prime_UTR |
| GTTCAAATGTCGTGCTTAAT+TGG | 0.263846 | 5_3:-7712648 | Msa0795680:five_prime_UTR |
| AGTTTGTGTTTGCTCTGTTT+TGG | 0.266249 | 5_3:-7710406 | Msa0795680:three_prime_UTR |
| TGAGGCAACACCATGCTTAA+AGG | 0.272966 | 5_3:+7711187 | None:intergenic |
| AATTATCCATAATACTAAAA+AGG | 0.293795 | 5_3:+7712850 | None:intergenic |
| CCACGCCTATGCTTGTGTTT+TGG | 0.302909 | 5_3:+7711244 | None:intergenic |
| TTACGATATATTAACCGTTC+AGG | 0.313637 | 5_3:-7712700 | Msa0795680:five_prime_UTR |
| CTGAGTTAAACAAAATAAAT+AGG | 0.333758 | 5_3:+7710716 | None:intergenic |
| AATTATTATCTTTCTTTCAA+TGG | 0.341993 | 5_3:-7712800 | Msa0795680:five_prime_UTR |
| TAGACTTTGTCCTTGTGTTT+TGG | 0.348076 | 5_3:-7711008 | Msa0795680:three_prime_UTR |
| AAAACAGAGCAAACACAAAC+TGG | 0.356064 | 5_3:+7710408 | None:intergenic |
| GGAAGGGAAACCTTACAAAT+TGG | 0.357419 | 5_3:-7710233 | Msa0795680:three_prime_UTR |
| ATAAATCCTTAACCCTATAA+AGG | 0.362973 | 5_3:+7710110 | None:intergenic |
| TTCAGTCCTTTATAGGGTTA+AGG | 0.368370 | 5_3:-7710116 | Msa0795680:three_prime_UTR |
| CCGCGACCTTTGAATCAAAA+AGG | 0.371533 | 5_3:+7710432 | None:intergenic |
| TTTGGCGCTGACTTTGTGGC+TGG | 0.373788 | 5_3:+7710748 | None:intergenic |
| TGTCAATTTGAACTCGTGAT+AGG | 0.377497 | 5_3:-7710655 | Msa0795680:three_prime_UTR |
| ATAAATAGGTGCTGAGGGTT+TGG | 0.389364 | 5_3:+7710730 | None:intergenic |
| ATTATGCTTGCTTCGTTGAA+TGG | 0.390277 | 5_3:-7712434 | Msa0795680:CDS |
| CTGGTTCCTCTTCTTCCCCA+TGG | 0.391825 | 5_3:+7712992 | None:intergenic |
| GGGAGTGGTTCAAGGCTGTT+TGG | 0.391864 | 5_3:-7710622 | Msa0795680:three_prime_UTR |
| AAGTGATTCAGTCCTTTATA+GGG | 0.393667 | 5_3:-7710122 | Msa0795680:three_prime_UTR |
| TTTAAATGGTACAATATATG+AGG | 0.397770 | 5_3:-7712905 | Msa0795680:five_prime_UTR |
| TTGATTTAGGGAGTGGTTCA+AGG | 0.404717 | 5_3:-7710630 | Msa0795680:three_prime_UTR |
| GAGTTTAGAACTCGATTGTC+TGG | 0.410816 | 5_3:+7713014 | None:intergenic |
| TCCTCAGTAGGCACGGAATT+CGG | 0.419859 | 5_3:+7712032 | None:intergenic |
| TACGATATATTAACCGTTCA+GGG | 0.420576 | 5_3:-7712699 | Msa0795680:five_prime_UTR |
| AGGCTGTTTGGTTGTTGTGT+TGG | 0.422296 | 5_3:-7710610 | Msa0795680:three_prime_UTR |
| TCTGCTGCTTCCAATTTGTA+AGG | 0.426969 | 5_3:+7710223 | None:intergenic |
| GAGGCAACACCATGCTTAAA+GGG | 0.428137 | 5_3:+7711188 | None:intergenic |
| CTCGCCCTAGCTGATTTAAT+CGG | 0.429999 | 5_3:+7712592 | None:intergenic |
| AGGTATTTACATCTTTGATT+CGG | 0.442276 | 5_3:-7710693 | Msa0795680:three_prime_UTR |
| TTGTGACCTCATCATGTTGC+TGG | 0.447536 | 5_3:-7710522 | Msa0795680:three_prime_UTR |
| GACGATCGAAGTGGTTGATT+AGG | 0.450843 | 5_3:-7712538 | Msa0795680:five_prime_UTR |
| CCATGCTTAAAGGGATATAT+GGG | 0.454718 | 5_3:+7711197 | None:intergenic |
| AGGCATGCCACCTGCACTGC+CGG | 0.454873 | 5_3:+7710159 | None:intergenic |
| CACTGTCCGCAAGGCTCTCT+AGG | 0.454930 | 5_3:+7710549 | None:intergenic |
| AGAGAAAAGCCGCACATAGC+AGG | 0.462652 | 5_3:+7710455 | None:intergenic |
| TTTAGGTTTAAAAGATTGAC+AGG | 0.466637 | 5_3:-7711313 | Msa0795680:intron |
| AAAGGATAAAATAATTTACC+TGG | 0.481033 | 5_3:+7712868 | None:intergenic |
| ATGCAGGTGGTTTGCATAGA+GGG | 0.485307 | 5_3:-7712376 | Msa0795680:CDS |
| TAGTGGATCTTAGCGAAGTC+CGG | 0.497024 | 5_3:-7710178 | Msa0795680:three_prime_UTR |
| AGAGGAGAGATTCGGTATGA+AGG | 0.497374 | 5_3:-7712482 | Msa0795680:five_prime_UTR |
| ATCAATATCTGACATGATAG+TGG | 0.498333 | 5_3:+7710054 | None:intergenic |
| GGTTTGCTATTGCTTTGTGC+AGG | 0.498629 | 5_3:-7710384 | Msa0795680:three_prime_UTR |
| TTAGCGAAGTCCGGCAGTGC+AGG | 0.501590 | 5_3:-7710169 | Msa0795680:three_prime_UTR |
| CAAGACCCACCCCAAGCAAA+AGG | 0.505782 | 5_3:+7710843 | None:intergenic |
| CCCATATATCCCTTTAAGCA+TGG | 0.506988 | 5_3:-7711197 | Msa0795680:CDS |
| AGGGTTTGGCGCTGACTTTG+TGG | 0.509488 | 5_3:+7710744 | None:intergenic |
| AACTTTAAAATGTGAAGGGA+AGG | 0.519296 | 5_3:-7710250 | Msa0795680:three_prime_UTR |
| GTCTCAACTTTAAAATGTGA+AGG | 0.521725 | 5_3:-7710255 | Msa0795680:three_prime_UTR |
| TTGGCGCTGACTTTGTGGCT+GGG | 0.523778 | 5_3:+7710749 | None:intergenic |
| GGTTTAAAAGATTGACAGGT+CGG | 0.524766 | 5_3:-7711309 | Msa0795680:CDS |
| AGCAAAAGGTAGCAGAATCA+AGG | 0.526577 | 5_3:+7710857 | None:intergenic |
| TTTGATGCCTACTGTCTGTA+GGG | 0.527006 | 5_3:-7710277 | Msa0795680:three_prime_UTR |
| TTTGATGCCTACTGTCTGTA+GGG | 0.527006 | 5_3:-7710317 | Msa0795680:three_prime_UTR |
| ATTGAACAAGAGGAGAGATT+CGG | 0.528803 | 5_3:-7712490 | Msa0795680:five_prime_UTR |
| CAATCGAGTTCTAAACTCCA+TGG | 0.532611 | 5_3:-7713009 | Msa0795680:five_prime_UTR |
| AACAAAATAAATAGGTGCTG+AGG | 0.534398 | 5_3:+7710724 | None:intergenic |
| ACAAAATAAATAGGTGCTGA+GGG | 0.535437 | 5_3:+7710725 | None:intergenic |
| GATGCAGGTGGTTTGCATAG+AGG | 0.539542 | 5_3:-7712377 | Msa0795680:CDS |
| AGTATTATGGATAATTGATG+TGG | 0.541886 | 5_3:-7712843 | Msa0795680:five_prime_UTR |
| ATCAAAATAAATTGAACAAG+AGG | 0.545076 | 5_3:-7712500 | Msa0795680:five_prime_UTR |
| CATGGGGAAGAAGAGGAACC+AGG | 0.548923 | 5_3:-7712991 | Msa0795680:five_prime_UTR |
| CGATTAAATCAGCTAGGGCG+AGG | 0.552180 | 5_3:-7712591 | Msa0795680:five_prime_UTR |
| TCACTTATACAATTATCTCT+AGG | 0.552262 | 5_3:+7710139 | None:intergenic |
| GAGGTTTCTGCAAATTGTGA+TGG | 0.555098 | 5_3:-7712572 | Msa0795680:five_prime_UTR |
| GCGAAGTCCGGCAGTGCAGG+TGG | 0.565471 | 5_3:-7710166 | Msa0795680:three_prime_UTR |
| ATTGTTCTCAAAGTTACCAA+TGG | 0.574638 | 5_3:+7712938 | None:intergenic |
| TTGCAGAATGTTACCCTGAA+CGG | 0.577637 | 5_3:+7712686 | None:intergenic |
| CGTGTTGCTCTTGAAGATGC+AGG | 0.579378 | 5_3:-7712392 | Msa0795680:CDS |
| AATCGAGTTCTAAACTCCAT+GGG | 0.579700 | 5_3:-7713008 | Msa0795680:five_prime_UTR |
| TAAACTCCATGGGGAAGAAG+AGG | 0.583773 | 5_3:-7712998 | Msa0795680:five_prime_UTR |
| CTCAGCATCCTCAGTAGGCA+CGG | 0.584267 | 5_3:+7712025 | None:intergenic |
| TTAAATGGTACAATATATGA+GGG | 0.588742 | 5_3:-7712904 | Msa0795680:five_prime_UTR |
| TCTCAACTTTAAAATGTGAA+GGG | 0.588917 | 5_3:-7710254 | Msa0795680:three_prime_UTR |
| AAGGATAAAATAATTTACCT+GGG | 0.594802 | 5_3:+7712869 | None:intergenic |
| GCATGTCCAGCAACATGATG+AGG | 0.595487 | 5_3:+7710516 | None:intergenic |
| ACTCTCCAAAACACAAGCAT+AGG | 0.597645 | 5_3:-7711249 | Msa0795680:CDS |
| ACTTTAAAATGTGAAGGGAA+GGG | 0.601974 | 5_3:-7710249 | Msa0795680:three_prime_UTR |
| AAGGTAGCAGAATCAAGGAA+TGG | 0.613309 | 5_3:+7710862 | None:intergenic |
| CACAACATACACTGTCCGCA+AGG | 0.621190 | 5_3:+7710540 | None:intergenic |
| ATAGCAGGCTAGAAACCGAC+TGG | 0.632043 | 5_3:+7710470 | None:intergenic |
| ACCGAATTCCGTGCCTACTG+AGG | 0.632507 | 5_3:-7712033 | Msa0795680:CDS |
| TATATTGTACCATTTAAACA+TGG | 0.650060 | 5_3:+7712910 | None:intergenic |
| GAGGGTAAATTATCTAACCC+AGG | 0.650613 | 5_3:-7712886 | Msa0795680:five_prime_UTR |
| GTTGAGACCCTACAGACAGT+AGG | 0.650738 | 5_3:+7710310 | None:intergenic |
| GACAGTAGGCATCAAAACAC+AGG | 0.652944 | 5_3:+7710284 | None:intergenic |
| GACAGTAGGCATCAAAACAC+AGG | 0.652944 | 5_3:+7710324 | None:intergenic |
| CAGTTCATAACATGGCCAGT+CGG | 0.655045 | 5_3:-7710485 | Msa0795680:three_prime_UTR |
| GTTGAGACCCTACAGACAGT+AGG | 0.655926 | 5_3:+7710270 | None:intergenic |
| CACCACTCAGCATCCTCAGT+AGG | 0.657406 | 5_3:+7712020 | None:intergenic |
| GGTTTCTAGCCTGCTATGTG+CGG | 0.660382 | 5_3:-7710464 | Msa0795680:three_prime_UTR |
| CCAAAACACAAGCATAGGCG+TGG | 0.662445 | 5_3:-7711244 | Msa0795680:CDS |
| GTTGCTCTTGAAGATGCAGG+TGG | 0.672716 | 5_3:-7712389 | Msa0795680:CDS |
| CTGCATCTTCAAGAGCAACA+CGG | 0.678512 | 5_3:+7712393 | None:intergenic |
| TTGACATCAACCAAAACACA+AGG | 0.693621 | 5_3:+7710998 | None:intergenic |
| ATCGAGTTCTAAACTCCATG+GGG | 0.705732 | 5_3:-7713007 | Msa0795680:five_prime_UTR |
| TGCCTACTGAGGATGCTGAG+TGG | 0.724719 | 5_3:-7712022 | Msa0795680:intron |
| GCAACCAGAGAATCAAACTG+AGG | 0.737099 | 5_3:+7711087 | None:intergenic |
| TTTATGCCTAGAGAGCCTTG+CGG | 0.741984 | 5_3:-7710555 | Msa0795680:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATATTAATAAACAAA+AGG | + | chr5_3:7711276-7711295 | None:intergenic | 10.0% |
| !!! | ATTTTTTCATTTTATAATCA+AGG | + | chr5_3:7712153-7712172 | None:intergenic | 10.0% |
| !!! | TTTTATCCTTTTTAGTATTA+TGG | - | chr5_3:7710268-7710287 | Msa0795680:three_prime_UTR | 15.0% |
| !! | AATTATCCATAATACTAAAA+AGG | + | chr5_3:7710277-7710296 | None:intergenic | 15.0% |
| !! | AATTATTATCTTTCTTTCAA+TGG | - | chr5_3:7710324-7710343 | Msa0795680:three_prime_UTR | 15.0% |
| !!! | ATTTAATGTTTTATTGCTTT+AGG | - | chr5_3:7710876-7710895 | Msa0795680:three_prime_UTR | 15.0% |
| !!! | TTTAATGTTTTATTGCTTTA+GGG | - | chr5_3:7710877-7710896 | Msa0795680:three_prime_UTR | 15.0% |
| !!! | CATTTAATTTAATGTATTCT+AGG | - | chr5_3:7710924-7710943 | Msa0795680:three_prime_UTR | 15.0% |
| !!! | ACAATATTTTTATAATGATC+TGG | - | chr5_3:7712342-7712361 | Msa0795680:intron | 15.0% |
| !!! | CAATATTTTTATAATGATCT+GGG | - | chr5_3:7712343-7712362 | Msa0795680:intron | 15.0% |
| !! | TATATTGTACCATTTAAACA+TGG | + | chr5_3:7710217-7710236 | None:intergenic | 20.0% |
| !! | TTTAAATGGTACAATATATG+AGG | - | chr5_3:7710219-7710238 | Msa0795680:three_prime_UTR | 20.0% |
| !! | TTAAATGGTACAATATATGA+GGG | - | chr5_3:7710220-7710239 | Msa0795680:three_prime_UTR | 20.0% |
| !! | AAGGATAAAATAATTTACCT+GGG | + | chr5_3:7710258-7710277 | None:intergenic | 20.0% |
| !! | AAAGGATAAAATAATTTACC+TGG | + | chr5_3:7710259-7710278 | None:intergenic | 20.0% |
| !! | ATCAAAATAAATTGAACAAG+AGG | - | chr5_3:7710624-7710643 | Msa0795680:three_prime_UTR | 20.0% |
| !! | ACAAAGAAATTTCCTAAAAA+AGG | - | chr5_3:7710774-7710793 | Msa0795680:three_prime_UTR | 20.0% |
| !!! | ATATAAAAAGGACCTTTTTT+AGG | + | chr5_3:7710789-7710808 | None:intergenic | 20.0% |
| !! | AATCTGCATTGAATATAAAA+AGG | + | chr5_3:7710801-7710820 | None:intergenic | 20.0% |
| !! | ACAATTCAAATCTAATAAAG+AGG | + | chr5_3:7711407-7711426 | None:intergenic | 20.0% |
| !! | TCTTTATTAGATTTGAATTG+TGG | - | chr5_3:7711406-7711425 | Msa0795680:intron | 20.0% |
| !! | TAAATGACATAATAGAATTC+TGG | + | chr5_3:7711572-7711591 | None:intergenic | 20.0% |
| !! | TTCGTTAAAATGTAACAAAA+GGG | + | chr5_3:7711665-7711684 | None:intergenic | 20.0% |
| !! | TTTCGTTAAAATGTAACAAA+AGG | + | chr5_3:7711666-7711685 | None:intergenic | 20.0% |
| !! | AATGAGTGTAATAACAAAAT+CGG | - | chr5_3:7711708-7711727 | Msa0795680:intron | 20.0% |
| !! | CTGAGTTAAACAAAATAAAT+AGG | + | chr5_3:7712411-7712430 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGTTTAACTCAG+AGG | - | chr5_3:7712411-7712430 | Msa0795680:CDS | 20.0% |
| !!! | CATTTTTTAATCTTCACCAT+TGG | - | chr5_3:7710170-7710189 | Msa0795680:three_prime_UTR | 25.0% |
| !! | CAATCTTTTCCATGTTTAAA+TGG | - | chr5_3:7710205-7710224 | Msa0795680:three_prime_UTR | 25.0% |
| ! | AGTATTATGGATAATTGATG+TGG | - | chr5_3:7710281-7710300 | Msa0795680:three_prime_UTR | 25.0% |
| ! | TCTTATTGTATAACTAGTTC+TGG | + | chr5_3:7711023-7711042 | None:intergenic | 25.0% |
| ! | CAAAACAGACTAACATAATA+TGG | + | chr5_3:7711238-7711257 | None:intergenic | 25.0% |
| !!! | TTATGTTAGTCTGTTTTGAT+TGG | - | chr5_3:7711240-7711259 | Msa0795680:CDS | 25.0% |
| !!! | TTTTAGTTAAAGATCTGCTA+TGG | - | chr5_3:7711298-7711317 | Msa0795680:CDS | 25.0% |
| ! | CAAAGAAATCCAAACAAAAA+AGG | + | chr5_3:7711433-7711452 | None:intergenic | 25.0% |
| ! | TGTTTGTAGAGATTGAAAAT+TGG | - | chr5_3:7711451-7711470 | Msa0795680:intron | 25.0% |
| ! | AATAACAAAATCGGTTATGA+TGG | - | chr5_3:7711717-7711736 | Msa0795680:intron | 25.0% |
| ! | ATAACAAAATCGGTTATGAT+GGG | - | chr5_3:7711718-7711737 | Msa0795680:intron | 25.0% |
| !!! | CTTACTTTGTTTTCGTTTTT+AGG | - | chr5_3:7711794-7711813 | Msa0795680:intron | 25.0% |
| !! | TTTAGGTTTAAAAGATTGAC+AGG | - | chr5_3:7711811-7711830 | Msa0795680:intron | 25.0% |
| ! | ATGAGCTAACGTAAATTTAA+TGG | + | chr5_3:7712093-7712112 | None:intergenic | 25.0% |
| ! | AGGTATTTACATCTTTGATT+CGG | - | chr5_3:7712431-7712450 | Msa0795680:CDS | 25.0% |
| !!! | TCTCAACTTTAAAATGTGAA+GGG | - | chr5_3:7712870-7712889 | Msa0795680:five_prime_UTR | 25.0% |
| ! | TATCATATGTAAAAAGCTAG+TGG | - | chr5_3:7712929-7712948 | Msa0795680:five_prime_UTR | 25.0% |
| ! | TCACTTATACAATTATCTCT+AGG | + | chr5_3:7712988-7713007 | None:intergenic | 25.0% |
| ! | ATAAATCCTTAACCCTATAA+AGG | + | chr5_3:7713017-7713036 | None:intergenic | 25.0% |
| CTGAACTCAAAAAAGAACAA+CGG | - | chr5_3:7710082-7710101 | Msa0795680:three_prime_UTR | 30.0% | |
| ! | AATGAAAATTAGCGTTTTCC+TGG | + | chr5_3:7710154-7710173 | None:intergenic | 30.0% |
| ATTGTTCTCAAAGTTACCAA+TGG | + | chr5_3:7710189-7710208 | None:intergenic | 30.0% | |
| TTACGATATATTAACCGTTC+AGG | - | chr5_3:7710424-7710443 | Msa0795680:three_prime_UTR | 30.0% | |
| TACGATATATTAACCGTTCA+GGG | - | chr5_3:7710425-7710444 | Msa0795680:three_prime_UTR | 30.0% | |
| ! | TTTTTCCGATTAAATCAGCT+AGG | - | chr5_3:7710527-7710546 | Msa0795680:three_prime_UTR | 30.0% |
| ! | TTTTCCGATTAAATCAGCTA+GGG | - | chr5_3:7710528-7710547 | Msa0795680:three_prime_UTR | 30.0% |
| ! | GTTGATTAGGATGTTGTTTA+AGG | - | chr5_3:7710599-7710618 | Msa0795680:three_prime_UTR | 30.0% |
| !! | TGCTTTTAGCTATATAGTGT+TGG | - | chr5_3:7710831-7710850 | Msa0795680:three_prime_UTR | 30.0% |
| ! | TTTAGGGTCATATGATGTAT+TGG | - | chr5_3:7710893-7710912 | Msa0795680:three_prime_UTR | 30.0% |
| AGACTAACATAATATGGTGT+TGG | + | chr5_3:7711232-7711251 | None:intergenic | 30.0% | |
| !!! | AATTGTGGACCTTTTTTGTT+TGG | - | chr5_3:7711421-7711440 | Msa0795680:intron | 30.0% |
| GATTGAAAATTGGTACTATG+CGG | - | chr5_3:7711461-7711480 | Msa0795680:intron | 30.0% | |
| ! | GAATACAAGCACTATTTCTT+AGG | + | chr5_3:7711528-7711547 | None:intergenic | 30.0% |
| AAAGGGATATATGGGAAATT+TGG | + | chr5_3:7711922-7711941 | None:intergenic | 30.0% | |
| ! | TTTCTCTCTTTTAGCATTTC+TGG | - | chr5_3:7712209-7712228 | Msa0795680:intron | 30.0% |
| !! | ACAAAATAAATAGGTGCTGA+GGG | + | chr5_3:7712402-7712421 | None:intergenic | 30.0% |
| ! | AACAAAATAAATAGGTGCTG+AGG | + | chr5_3:7712403-7712422 | None:intergenic | 30.0% |
| !!! | TCGTGATAGGTTTTGATTTA+GGG | - | chr5_3:7712482-7712501 | Msa0795680:five_prime_UTR | 30.0% |
| ! | TTTTTGTGCAGTTCATAACA+TGG | - | chr5_3:7712631-7712650 | Msa0795680:five_prime_UTR | 30.0% |
| !! | TTCTCTCCTTTTTGATTCAA+AGG | - | chr5_3:7712686-7712705 | Msa0795680:five_prime_UTR | 30.0% |
| !! | GTCTCAACTTTAAAATGTGA+AGG | - | chr5_3:7712869-7712888 | Msa0795680:five_prime_UTR | 30.0% |
| !! | AACTTTAAAATGTGAAGGGA+AGG | - | chr5_3:7712874-7712893 | Msa0795680:five_prime_UTR | 30.0% |
| !! | ACTTTAAAATGTGAAGGGAA+GGG | - | chr5_3:7712875-7712894 | Msa0795680:five_prime_UTR | 30.0% |
| TAAGTGATTCAGTCCTTTAT+AGG | - | chr5_3:7713001-7713020 | Msa0795680:five_prime_UTR | 30.0% | |
| AAGTGATTCAGTCCTTTATA+GGG | - | chr5_3:7713002-7713021 | Msa0795680:five_prime_UTR | 30.0% | |
| !!! | TCTTTTTTGAGTTCAGGTAG+AGG | + | chr5_3:7710078-7710097 | None:intergenic | 35.0% |
| !!! | CGTTGTTCTTTTTTGAGTTC+AGG | + | chr5_3:7710084-7710103 | None:intergenic | 35.0% |
| !! | AATCGAGTTCTAAACTCCAT+GGG | - | chr5_3:7710116-7710135 | Msa0795680:three_prime_UTR | 35.0% |
| GTTCAAATGTCGTGCTTAAT+TGG | - | chr5_3:7710476-7710495 | Msa0795680:three_prime_UTR | 35.0% | |
| ! | TATTTTATCGACGATCGAAG+TGG | - | chr5_3:7710577-7710596 | Msa0795680:three_prime_UTR | 35.0% |
| ATTGAACAAGAGGAGAGATT+CGG | - | chr5_3:7710634-7710653 | Msa0795680:three_prime_UTR | 35.0% | |
| ATTATGCTTGCTTCGTTGAA+TGG | - | chr5_3:7710690-7710709 | Msa0795680:three_prime_UTR | 35.0% | |
| ! | TAGCTATATAGTGTTGGAAG+TGG | - | chr5_3:7710837-7710856 | Msa0795680:three_prime_UTR | 35.0% |
| ! | AAGCCTTTTTCCACTAAGTT+GGG | + | chr5_3:7711176-7711195 | None:intergenic | 35.0% |
| GTCTATATTCTATAGCTCAG+TGG | - | chr5_3:7711368-7711387 | Msa0795680:intron | 35.0% | |
| TTTCGCTATATCAGAATGTG+TGG | - | chr5_3:7711502-7711521 | Msa0795680:intron | 35.0% | |
| AAACAAAGTAAGTGAGACCA+AGG | + | chr5_3:7711786-7711805 | None:intergenic | 35.0% | |
| GGTTTAAAAGATTGACAGGT+CGG | - | chr5_3:7711815-7711834 | Msa0795680:intron | 35.0% | |
| CCATGCTTAAAGGGATATAT+GGG | + | chr5_3:7711930-7711949 | None:intergenic | 35.0% | |
| ACCATGCTTAAAGGGATATA+TGG | + | chr5_3:7711931-7711950 | None:intergenic | 35.0% | |
| ! | ACAGCTCATTTTCCAAAATG+AGG | + | chr5_3:7711958-7711977 | None:intergenic | 35.0% |
| ! | TAGACTTTGTCCTTGTGTTT+TGG | - | chr5_3:7712116-7712135 | Msa0795680:intron | 35.0% |
| TTGACATCAACCAAAACACA+AGG | + | chr5_3:7712129-7712148 | None:intergenic | 35.0% | |
| TTGAGTCTGTTCATCGAATT+TGG | - | chr5_3:7712235-7712254 | Msa0795680:intron | 35.0% | |
| TGTCAATTTGAACTCGTGAT+AGG | - | chr5_3:7712469-7712488 | Msa0795680:five_prime_UTR | 35.0% | |
| !!! | CTCGTGATAGGTTTTGATTT+AGG | - | chr5_3:7712481-7712500 | Msa0795680:five_prime_UTR | 35.0% |
| !!! | ATAGGTTTTGATTTAGGGAG+TGG | - | chr5_3:7712487-7712506 | Msa0795680:five_prime_UTR | 35.0% |
| TCCTGTAAAGCAAAAAAGGA+TGG | + | chr5_3:7712544-7712563 | None:intergenic | 35.0% | |
| CCATTCCTGTAAAGCAAAAA+AGG | + | chr5_3:7712548-7712567 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGCTTTACAGGAA+TGG | - | chr5_3:7712545-7712564 | Msa0795680:five_prime_UTR | 35.0% |
| AAAACAGAGCAAACACAAAC+TGG | + | chr5_3:7712719-7712738 | None:intergenic | 35.0% | |
| ! | AGTTTGTGTTTGCTCTGTTT+TGG | - | chr5_3:7712718-7712737 | Msa0795680:five_prime_UTR | 35.0% |
| ! | GTTTGTGTTTGCTCTGTTTT+GGG | - | chr5_3:7712719-7712738 | Msa0795680:five_prime_UTR | 35.0% |
| TTCAGTCCTTTATAGGGTTA+AGG | - | chr5_3:7713008-7713027 | Msa0795680:five_prime_UTR | 35.0% | |
| ! | GAGTTTAGAACTCGATTGTC+TGG | + | chr5_3:7710113-7710132 | None:intergenic | 40.0% |
| !! | CAATCGAGTTCTAAACTCCA+TGG | - | chr5_3:7710115-7710134 | Msa0795680:three_prime_UTR | 40.0% |
| !! | ATCGAGTTCTAAACTCCATG+GGG | - | chr5_3:7710117-7710136 | Msa0795680:three_prime_UTR | 40.0% |
| GAGGGTAAATTATCTAACCC+AGG | - | chr5_3:7710238-7710257 | Msa0795680:three_prime_UTR | 40.0% | |
| TTGCAGAATGTTACCCTGAA+CGG | + | chr5_3:7710441-7710460 | None:intergenic | 40.0% | |
| GAGGTTTCTGCAAATTGTGA+TGG | - | chr5_3:7710552-7710571 | Msa0795680:three_prime_UTR | 40.0% | |
| GTTCGCTTTGTGGTAGTTAA+TGG | - | chr5_3:7711050-7711069 | Msa0795680:three_prime_UTR | 40.0% | |
| !! | CTTTTTCCACTAAGTTGGGT+CGG | + | chr5_3:7711172-7711191 | None:intergenic | 40.0% |
| ! | CAAGCCTTTTTCCACTAAGT+TGG | + | chr5_3:7711177-7711196 | None:intergenic | 40.0% |
| CAACTTAGTGGAAAAAGGCT+TGG | - | chr5_3:7711175-7711194 | Msa0795680:CDS | 40.0% | |
| CTGCTAGGATATAGGCTTAT+AGG | - | chr5_3:7711321-7711340 | Msa0795680:intron | 40.0% | |
| ATTTGCAATGAGTACAGCCT+TGG | - | chr5_3:7711766-7711785 | Msa0795680:intron | 40.0% | |
| ACTCTCCAAAACACAAGCAT+AGG | - | chr5_3:7711875-7711894 | Msa0795680:intron | 40.0% | |
| CCCATATATCCCTTTAAGCA+TGG | - | chr5_3:7711927-7711946 | Msa0795680:intron | 40.0% | |
| TTCACCTCAGTTTGATTCTC+TGG | - | chr5_3:7712033-7712052 | Msa0795680:CDS | 40.0% | |
| AAGGTAGCAGAATCAAGGAA+TGG | + | chr5_3:7712265-7712284 | None:intergenic | 40.0% | |
| AGCAAAAGGTAGCAGAATCA+AGG | + | chr5_3:7712270-7712289 | None:intergenic | 40.0% | |
| ! | TGATTCTGCTACCTTTTGCT+TGG | - | chr5_3:7712270-7712289 | Msa0795680:intron | 40.0% |
| ! | GATTCTGCTACCTTTTGCTT+GGG | - | chr5_3:7712271-7712290 | Msa0795680:intron | 40.0% |
| ! | ATTCTGCTACCTTTTGCTTG+GGG | - | chr5_3:7712272-7712291 | Msa0795680:intron | 40.0% |
| !! | ATAAATAGGTGCTGAGGGTT+TGG | + | chr5_3:7712397-7712416 | None:intergenic | 40.0% |
| TTGATTTAGGGAGTGGTTCA+AGG | - | chr5_3:7712494-7712513 | Msa0795680:five_prime_UTR | 40.0% | |
| !!! | GCCATCCTTTTTTGCTTTAC+AGG | - | chr5_3:7712540-7712559 | Msa0795680:five_prime_UTR | 40.0% |
| !! | CCTTTTTGATTCAAAGGTCG+CGG | - | chr5_3:7712692-7712711 | Msa0795680:five_prime_UTR | 40.0% |
| !! | GCAGGAACAAGAGTTGTTTT+CGG | - | chr5_3:7712758-7712777 | Msa0795680:five_prime_UTR | 40.0% |
| !! | AAGAGTTGTTTTCGGTCTGT+AGG | - | chr5_3:7712766-7712785 | Msa0795680:five_prime_UTR | 40.0% |
| !! | AGAGTTGTTTTCGGTCTGTA+GGG | - | chr5_3:7712767-7712786 | Msa0795680:five_prime_UTR | 40.0% |
| ! | TTTTGATGCCTACTGTCTGT+AGG | - | chr5_3:7712806-7712825 | Msa0795680:five_prime_UTR | 40.0% |
| TTTGATGCCTACTGTCTGTA+GGG | - | chr5_3:7712807-7712826 | Msa0795680:five_prime_UTR | 40.0% | |
| ! | TTTTGATGCCTACTGTCTGT+AGG | - | chr5_3:7712806-7712825 | Msa0795680:five_prime_UTR | 40.0% |
| TTTGATGCCTACTGTCTGTA+GGG | - | chr5_3:7712807-7712826 | Msa0795680:five_prime_UTR | 40.0% | |
| GGAAGGGAAACCTTACAAAT+TGG | - | chr5_3:7712891-7712910 | Msa0795680:five_prime_UTR | 40.0% | |
| ! | TCTGCTGCTTCCAATTTGTA+AGG | + | chr5_3:7712904-7712923 | None:intergenic | 40.0% |
| TAAACTCCATGGGGAAGAAG+AGG | - | chr5_3:7710126-7710145 | Msa0795680:three_prime_UTR | 45.0% | |
| ! | CTCGCCCTAGCTGATTTAAT+CGG | + | chr5_3:7710535-7710554 | None:intergenic | 45.0% |
| GACGATCGAAGTGGTTGATT+AGG | - | chr5_3:7710586-7710605 | Msa0795680:three_prime_UTR | 45.0% | |
| ! | AGAGGAGAGATTCGGTATGA+AGG | - | chr5_3:7710642-7710661 | Msa0795680:three_prime_UTR | 45.0% |
| CTGCATCTTCAAGAGCAACA+CGG | + | chr5_3:7710734-7710753 | None:intergenic | 45.0% | |
| ! | ATGCAGGTGGTTTGCATAGA+GGG | - | chr5_3:7710748-7710767 | Msa0795680:three_prime_UTR | 45.0% |
| TGACAACTTCAACAGAGACG+AGG | - | chr5_3:7710988-7711007 | Msa0795680:three_prime_UTR | 45.0% | |
| ! | AGAGAAGTGTGTTCGCTTTG+TGG | - | chr5_3:7711040-7711059 | Msa0795680:three_prime_UTR | 45.0% |
| CGACCCAACTTAGTGGAAAA+AGG | - | chr5_3:7711170-7711189 | Msa0795680:exon | 45.0% | |
| AAAGATCTGCTATGGCTGCT+AGG | - | chr5_3:7711306-7711325 | Msa0795680:CDS | 45.0% | |
| TGCTATGGCTGCTAGGATAT+AGG | - | chr5_3:7711313-7711332 | Msa0795680:intron | 45.0% | |
| GAGGCAACACCATGCTTAAA+GGG | + | chr5_3:7711939-7711958 | None:intergenic | 45.0% | |
| TGAGGCAACACCATGCTTAA+AGG | + | chr5_3:7711940-7711959 | None:intergenic | 45.0% | |
| !!! | AGCATGGTGTTGCCTCATTT+TGG | - | chr5_3:7711943-7711962 | Msa0795680:intron | 45.0% |
| GCAACCAGAGAATCAAACTG+AGG | + | chr5_3:7712040-7712059 | None:intergenic | 45.0% | |
| AGGCTGTTTGGTTGTTGTGT+TGG | - | chr5_3:7712514-7712533 | Msa0795680:five_prime_UTR | 45.0% | |
| TTTATGCCTAGAGAGCCTTG+CGG | - | chr5_3:7712569-7712588 | Msa0795680:five_prime_UTR | 45.0% | |
| TTGTGACCTCATCATGTTGC+TGG | - | chr5_3:7712602-7712621 | Msa0795680:five_prime_UTR | 45.0% | |
| CAGTTCATAACATGGCCAGT+CGG | - | chr5_3:7712639-7712658 | Msa0795680:five_prime_UTR | 45.0% | |
| CCGCGACCTTTGAATCAAAA+AGG | + | chr5_3:7712695-7712714 | None:intergenic | 45.0% | |
| !! | GGTTTGCTATTGCTTTGTGC+AGG | - | chr5_3:7712740-7712759 | Msa0795680:five_prime_UTR | 45.0% |
| GACAGTAGGCATCAAAACAC+AGG | + | chr5_3:7712803-7712822 | None:intergenic | 45.0% | |
| GACAGTAGGCATCAAAACAC+AGG | + | chr5_3:7712803-7712822 | None:intergenic | 45.0% | |
| ! | TAGTGGATCTTAGCGAAGTC+CGG | - | chr5_3:7712946-7712965 | Msa0795680:five_prime_UTR | 45.0% |
| CGATTAAATCAGCTAGGGCG+AGG | - | chr5_3:7710533-7710552 | Msa0795680:three_prime_UTR | 50.0% | |
| ! | CGTGTTGCTCTTGAAGATGC+AGG | - | chr5_3:7710732-7710751 | Msa0795680:three_prime_UTR | 50.0% |
| GTTGCTCTTGAAGATGCAGG+TGG | - | chr5_3:7710735-7710754 | Msa0795680:three_prime_UTR | 50.0% | |
| ! | GATGCAGGTGGTTTGCATAG+AGG | - | chr5_3:7710747-7710766 | Msa0795680:three_prime_UTR | 50.0% |
| CTTCAACAGAGACGAGGACT+AGG | - | chr5_3:7710994-7711013 | Msa0795680:three_prime_UTR | 50.0% | |
| TCCTCAGTAGGCACGGAATT+CGG | + | chr5_3:7711095-7711114 | None:intergenic | 50.0% | |
| ! | CCACGCCTATGCTTGTGTTT+TGG | + | chr5_3:7711883-7711902 | None:intergenic | 50.0% |
| CCAAAACACAAGCATAGGCG+TGG | - | chr5_3:7711880-7711899 | Msa0795680:intron | 50.0% | |
| ! | TGCTACCTTTTGCTTGGGGT+GGG | - | chr5_3:7712276-7712295 | Msa0795680:intron | 50.0% |
| ! | TTTTGCTTGGGGTGGGTCTT+GGG | - | chr5_3:7712283-7712302 | Msa0795680:intron | 50.0% |
| CACAACATACACTGTCCGCA+AGG | + | chr5_3:7712587-7712606 | None:intergenic | 50.0% | |
| GCATGTCCAGCAACATGATG+AGG | + | chr5_3:7712611-7712630 | None:intergenic | 50.0% | |
| ATAGCAGGCTAGAAACCGAC+TGG | + | chr5_3:7712657-7712676 | None:intergenic | 50.0% | |
| !! | GGTTTCTAGCCTGCTATGTG+CGG | - | chr5_3:7712660-7712679 | Msa0795680:five_prime_UTR | 50.0% |
| AGAGAAAAGCCGCACATAGC+AGG | + | chr5_3:7712672-7712691 | None:intergenic | 50.0% | |
| GTTGAGACCCTACAGACAGT+AGG | + | chr5_3:7712817-7712836 | None:intergenic | 50.0% | |
| GTTGAGACCCTACAGACAGT+AGG | + | chr5_3:7712817-7712836 | None:intergenic | 50.0% | |
| CTGGTTCCTCTTCTTCCCCA+TGG | + | chr5_3:7710135-7710154 | None:intergenic | 55.0% | |
| CATGGGGAAGAAGAGGAACC+AGG | - | chr5_3:7710133-7710152 | Msa0795680:three_prime_UTR | 55.0% | |
| ACCGAATTCCGTGCCTACTG+AGG | - | chr5_3:7711091-7711110 | Msa0795680:three_prime_UTR | 55.0% | |
| CTCAGCATCCTCAGTAGGCA+CGG | + | chr5_3:7711102-7711121 | None:intergenic | 55.0% | |
| TGCCTACTGAGGATGCTGAG+TGG | - | chr5_3:7711102-7711121 | Msa0795680:three_prime_UTR | 55.0% | |
| CACCACTCAGCATCCTCAGT+AGG | + | chr5_3:7711107-7711126 | None:intergenic | 55.0% | |
| ! | ACTAAGTTGGGTCGGCTGCA+TGG | + | chr5_3:7711164-7711183 | None:intergenic | 55.0% |
| ATGCAGCCGACCCAACTTAG+TGG | - | chr5_3:7711163-7711182 | Msa0795680:exon | 55.0% | |
| ! | CTGCTACCTTTTGCTTGGGG+TGG | - | chr5_3:7712275-7712294 | Msa0795680:intron | 55.0% |
| CAAGACCCACCCCAAGCAAA+AGG | + | chr5_3:7712284-7712303 | None:intergenic | 55.0% | |
| ! | CTTTTGCTTGGGGTGGGTCT+TGG | - | chr5_3:7712282-7712301 | Msa0795680:intron | 55.0% |
| !! | TTGGCGCTGACTTTGTGGCT+GGG | + | chr5_3:7712378-7712397 | None:intergenic | 55.0% |
| !! | TTTGGCGCTGACTTTGTGGC+TGG | + | chr5_3:7712379-7712398 | None:intergenic | 55.0% |
| !! | AGGGTTTGGCGCTGACTTTG+TGG | + | chr5_3:7712383-7712402 | None:intergenic | 55.0% |
| GGGAGTGGTTCAAGGCTGTT+TGG | - | chr5_3:7712502-7712521 | Msa0795680:five_prime_UTR | 55.0% | |
| CACTGTCCGCAAGGCTCTCT+AGG | + | chr5_3:7712578-7712597 | None:intergenic | 60.0% | |
| TTAGCGAAGTCCGGCAGTGC+AGG | - | chr5_3:7712955-7712974 | Msa0795680:five_prime_UTR | 60.0% | |
| AGGCATGCCACCTGCACTGC+CGG | + | chr5_3:7712968-7712987 | None:intergenic | 65.0% | |
| GCGAAGTCCGGCAGTGCAGG+TGG | - | chr5_3:7712958-7712977 | Msa0795680:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7710060 | 7713086 | 7710060 | ID=Msa0795680;Name=Msa0795680 |
| chr5_3 | mRNA | 7710060 | 7713086 | 7710060 | ID=Msa0795680-mRNA-1;Parent=Msa0795680;Name=Msa0795680-mRNA-1;_AED=0.15;_eAED=0.15;_QI=633|0.5|0.66|1|1|1|3|1114|105 |
| chr5_3 | exon | 7710060 | 7711330 | 7710060 | ID=Msa0795680-mRNA-1:exon:3208;Parent=Msa0795680-mRNA-1 |
| chr5_3 | exon | 7712023 | 7712080 | 7712023 | ID=Msa0795680-mRNA-1:exon:3207;Parent=Msa0795680-mRNA-1 |
| chr5_3 | exon | 7712351 | 7713086 | 7712351 | ID=Msa0795680-mRNA-1:exon:3206;Parent=Msa0795680-mRNA-1 |
| chr5_3 | five_prime_UTR | 7712454 | 7713086 | 7712454 | ID=Msa0795680-mRNA-1:five_prime_utr;Parent=Msa0795680-mRNA-1 |
| chr5_3 | CDS | 7712351 | 7712453 | 7712351 | ID=Msa0795680-mRNA-1:cds;Parent=Msa0795680-mRNA-1 |
| chr5_3 | CDS | 7712023 | 7712080 | 7712023 | ID=Msa0795680-mRNA-1:cds;Parent=Msa0795680-mRNA-1 |
| chr5_3 | CDS | 7711174 | 7711330 | 7711174 | ID=Msa0795680-mRNA-1:cds;Parent=Msa0795680-mRNA-1 |
| chr5_3 | three_prime_UTR | 7710060 | 7711173 | 7710060 | ID=Msa0795680-mRNA-1:three_prime_utr;Parent=Msa0795680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
