AlfalfaGEDB | Msa1299010

M. sativa cultivar zhongmu-4 / Msa1299010

KEGG: -
GO: GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
PFAM: PF14570.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299010	sp\|P34909\|NOT4_YEAST	44.444	54	27	1	273	323	33	86	7.12e-11	67.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299010	A0A396IDB7	95.977	348	14	0	1	348	1	348	0.0	570

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072170	Msa1299010	0.815205	1.041611e-51	-8.615850e-47
Msa0118540	Msa1299010	0.816420	5.580677e-52	-8.615850e-47
Msa0120540	Msa1299010	0.812778	3.572438e-51	-8.615850e-47
Msa0614990	Msa1299010	0.804056	2.593980e-49	-8.615850e-47
Msa0673470	Msa1299010	0.801689	7.998512e-49	-8.615850e-47
Msa0693790	Msa1299010	0.818233	2.181672e-52	-8.615850e-47
Msa0705600	Msa1299010	0.805527	1.278723e-49	-8.615850e-47
Msa1259400	Msa1299010	0.842296	2.820193e-58	-8.615850e-47
Msa0387910	Msa1299010	0.819425	1.169129e-52	-8.615850e-47
Msa0429950	Msa1299010	0.821045	4.974285e-53	-8.615850e-47
Msa0993240	Msa1299010	0.805641	1.210228e-49	-8.615850e-47
Msa1211000	Msa1299010	0.876000	1.976322e-68	-8.615850e-47
Msa0534410	Msa1299010	0.816982	4.174912e-52	-8.615850e-47
Msa0924150	Msa1299010	-0.812728	3.664314e-51	-8.615850e-47
Msa0928010	Msa1299010	0.803119	4.059237e-49	-8.615850e-47
Msa0933290	Msa1299010	0.805683	1.185601e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299010	MtrunA17_Chr4g0059601	95.977	348	14	0	1	348	1	348	0.0	570
Msa1299010	MtrunA17_Chr6g0451991	43.910	312	122	12	22	319	14	286	2.96e-57	188

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1299010	AT5G62910.1	44.134	358	153	10	1	345	1	324	1.20e-68	218
Msa1299010	AT5G62910.2	44.134	358	153	10	1	345	1	324	1.20e-68	218
Msa1299010	AT3G48070.1	46.328	354	149	11	1	348	1	319	5.07e-65	209
Msa1299010	AT3G48070.2	45.739	352	152	10	1	347	1	318	6.64e-64	207
Msa1299010	AT3G48070.3	47.656	256	101	8	96	347	43	269	1.25e-43	152
Msa1299010	AT1G74870.1	30.492	305	138	7	22	319	21	258	7.90e-27	107
Msa1299010	AT2G28540.2	42.105	57	27	1	273	323	9	65	9.78e-11	63.5
Msa1299010	AT2G28540.1	42.105	57	27	1	273	323	9	65	9.80e-11	63.5

Find 137 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTATCGTCTTCACAAATT+AGG	0.123066	8_3:-59995137	Msa1299010:five_prime_UTR
CCTCCAAGCTTTGCCATTAC+TGG	0.202687	8_3:+59994218	None:intergenic
GTGACTGATGGTTTGAATTT+AGG	0.215191	8_3:-59994288	Msa1299010:CDS
TTGTTTCTCATTTCATCTTA+TGG	0.216723	8_3:-59993700	Msa1299010:three_prime_UTR
ATTCAATACATTGAAATAAA+TGG	0.224114	8_3:-59993619	Msa1299010:three_prime_UTR
AGTAGTGGTGGGTGTTTCTC+TGG	0.244371	8_3:-59994483	Msa1299010:CDS
TCTATCGTCTTCACAAATTA+GGG	0.279268	8_3:-59995136	Msa1299010:five_prime_UTR
ACCCTCATTCTGAGGCAAAA+AGG	0.317365	8_3:-59995230	Msa1299010:five_prime_UTR
CTTCAATTTCGCGGACCTAT+TGG	0.323866	8_3:+59994898	None:intergenic
GAGCAGGATGCTCGTTGTCC+TGG	0.324362	8_3:-59993982	Msa1299010:CDS
TCAAGATCCTCACAGCAAAT+TGG	0.334616	8_3:+59994078	None:intergenic
AGTTAGAGAGATAACGAAAA+TGG	0.337044	8_3:+59995179	None:intergenic
GTGTTGTGTGGCAATGATTC+CGG	0.338325	8_3:-59994558	Msa1299010:CDS
CCACACAACACACTACTATT+AGG	0.338725	8_3:+59994570	None:intergenic
TTCATAGGTCTAGTTGGTTT+AGG	0.341217	8_3:-59993754	Msa1299010:three_prime_UTR
AATGTGAAGTGGAAGCTTTA+AGG	0.357114	8_3:+59993573	None:intergenic
CGTTCCACCACTCCCTGGTT+TGG	0.368101	8_3:+59994254	None:intergenic
CTGTGAGGATCTTGATTTAA+CGG	0.370410	8_3:-59994070	Msa1299010:CDS
TGGTTTGAATTTAGGATGTT+TGG	0.374976	8_3:-59994280	Msa1299010:CDS
GATGAATCCGTTTCTGCAAC+GGG	0.375384	8_3:+59994318	None:intergenic
ATGTGAAGTGGAAGCTTTAA+GGG	0.379852	8_3:+59993574	None:intergenic
ACTCCGAATCACTGTCTTGA+TGG	0.383993	8_3:+59994616	None:intergenic
AAGAAGAAGGGTTGCAAGGA+TGG	0.391810	8_3:-59994747	Msa1299010:CDS
CTCACAGCAAATTGGACAAT+TGG	0.402448	8_3:+59994086	None:intergenic
CCACAAGAGGATTCTTGAGC+AGG	0.406130	8_3:-59993998	Msa1299010:CDS
ATGATGGATGCTTGGATGAT+TGG	0.408221	8_3:-59994401	Msa1299010:CDS
CGTTTGCTCTGTTTCCCCAC+TGG	0.408315	8_3:+59994693	None:intergenic
GAAACAGAGCAAACGTGAAT+TGG	0.411752	8_3:-59994685	Msa1299010:CDS
TGATGGATGCTTGGATGATT+GGG	0.423751	8_3:-59994400	Msa1299010:CDS
ACACTACTATTAGGACTGAT+AGG	0.429535	8_3:+59994579	None:intergenic
GCATACTATGCTGTTTCGAC+AGG	0.434123	8_3:+59994160	None:intergenic
AGAAGTAGAACATGAGGAGG+AGG	0.445552	8_3:-59994427	Msa1299010:CDS
GAATGAACCCGTTGCAGAAA+CGG	0.447105	8_3:-59994325	Msa1299010:CDS
GAGTGGTGGAACGGTTCCTC+GGG	0.449106	8_3:-59994244	Msa1299010:CDS
TGTTGTGTGGCAATGATTCC+GGG	0.450115	8_3:-59994557	Msa1299010:CDS
GTGTTAGCGGCGGAAGGAAT+CGG	0.452634	8_3:+59995041	None:intergenic
CCTCCTACAAAACGTGGATT+CGG	0.456274	8_3:+59994138	None:intergenic
GGAGTGGTGGAACGGTTCCT+CGG	0.457706	8_3:-59994245	Msa1299010:CDS
AGCAGGATGCTCGTTGTCCT+GGG	0.459006	8_3:-59993981	Msa1299010:CDS
TTGCCTCAGAATGAGGGTCC+AGG	0.459610	8_3:+59995235	None:intergenic
ACGCTGCAAAATGATGGAAT+TGG	0.460023	8_3:+59993530	None:intergenic
GCCAGGGTTCTTGGTGTTAG+CGG	0.468562	8_3:+59995028	None:intergenic
GAAGGGTTGCAAGGATGGAT+TGG	0.469248	8_3:-59994742	Msa1299010:CDS
AGTAGTAGTTCTAGTAGTGG+TGG	0.477973	8_3:-59994495	Msa1299010:CDS
CATGTGCCGTCGTCGCCAGT+GGG	0.478008	8_3:-59994708	Msa1299010:CDS
CTATGCTGTTTCGACAGGTT+GGG	0.479061	8_3:+59994165	None:intergenic
TTCAGGTGCGGTGAAGAAGA+AGG	0.484533	8_3:-59994760	Msa1299010:intron
ATGCTCGTTGTCCTGGGTGC+AGG	0.487799	8_3:-59993975	Msa1299010:CDS
GGATGTTTGGATTCCAAACC+AGG	0.490028	8_3:-59994267	Msa1299010:CDS
ACAACGACGCTGCAAAATGA+TGG	0.491457	8_3:+59993524	None:intergenic
CTTATACTGCTTCAATTTCG+CGG	0.494651	8_3:+59994889	None:intergenic
CCAGTAATGGCAAAGCTTGG+AGG	0.496535	8_3:-59994218	Msa1299010:CDS
CAAACGTGAATTGGAGAAAG+TGG	0.497957	8_3:-59994676	Msa1299010:CDS
TGGCACAGACATGCGAGACC+AGG	0.500008	8_3:+59994110	None:intergenic
ATGGAGGTAGCCTTACTCTT+CGG	0.500698	8_3:-59993909	Msa1299010:CDS
GGAGGATGATGATGGATGCT+TGG	0.501682	8_3:-59994409	Msa1299010:CDS
GTAGTGGTGGGTGTTTCTCT+GGG	0.502450	8_3:-59994482	Msa1299010:CDS
CCACTGGCGACGACGGCACA+TGG	0.507430	8_3:+59994709	None:intergenic
GGAAACCATGGCTGAACCGT+TGG	0.508059	8_3:+59995082	None:intergenic
CGGAACGGCGGCGATTGAAT+CGG	0.509579	8_3:+59995061	None:intergenic
GAAACCATGGCTGAACCGTT+GGG	0.510820	8_3:+59995083	None:intergenic
ACTATGCTGTTTCGACAGGT+TGG	0.517407	8_3:+59994164	None:intergenic
CATGAGGAGGAGGATGATGA+TGG	0.519831	8_3:-59994417	Msa1299010:CDS
CTTGGATGATTGGGAGGCTG+TGG	0.524760	8_3:-59994391	Msa1299010:CDS
TGAAGAAGAAGTAGAACATG+AGG	0.527036	8_3:-59994433	Msa1299010:CDS
AGATGAATCCGTTTCTGCAA+CGG	0.528437	8_3:+59994317	None:intergenic
CTCTGGGAATATTACAGAAG+AGG	0.529198	8_3:-59994466	Msa1299010:CDS
TGTTGGTATGTGAATACATA+AGG	0.531389	8_3:-59993652	Msa1299010:three_prime_UTR
CATCCAGTAATGGCAAAGCT+TGG	0.537321	8_3:-59994221	Msa1299010:CDS
ACTATAGACAAAATGTGAAG+TGG	0.540347	8_3:+59993562	None:intergenic
AACGAGCCAACCGAAGAGTA+AGG	0.540467	8_3:+59993899	None:intergenic
GACAGGTTGGGTAAAGTCTG+AGG	0.544161	8_3:+59994177	None:intergenic
GATCCATCAAGACAGTGATT+CGG	0.544172	8_3:-59994619	Msa1299010:CDS
TTCTTGGTGTTAGCGGCGGA+AGG	0.545412	8_3:+59995035	None:intergenic
CAGTAATGGCAAAGCTTGGA+GGG	0.550530	8_3:-59994217	Msa1299010:CDS
TTGATGCGCGTCGTGAACAA+TGG	0.554675	8_3:-59994865	Msa1299010:CDS
TTGGATTCCAAACCAGGGAG+TGG	0.557492	8_3:-59994261	Msa1299010:CDS
TCAGGTGCGGTGAAGAAGAA+GGG	0.558988	8_3:-59994759	Msa1299010:intron
GGAACCGTTCCACCACTCCC+TGG	0.559516	8_3:+59994249	None:intergenic
TTAAGGGAATATGCCATGGC+AGG	0.559683	8_3:+59993590	None:intergenic
GGCGAGGCGTAGAGGTGGAG+AGG	0.561849	8_3:-59994652	Msa1299010:CDS
AGAAGAAGTAGAACATGAGG+AGG	0.564899	8_3:-59994430	Msa1299010:CDS
ACTACCAGTGAAATTCGTCC+CGG	0.566478	8_3:+59994539	None:intergenic
TCATCTTGTGAAGTGACTGA+TGG	0.567881	8_3:-59994300	Msa1299010:CDS
GATTCCGGGACGAATTTCAC+TGG	0.570168	8_3:-59994543	Msa1299010:CDS
GTTCCTCGGGCATCCAGTAA+TGG	0.570292	8_3:-59994231	Msa1299010:CDS
GGCTCTATGCTTCTCATCGG+CGG	0.570378	8_3:+59994356	None:intergenic
GATTCCAAACCAGGGAGTGG+TGG	0.572211	8_3:-59994258	Msa1299010:CDS
ACACTTGCTTCTGTCTCGAT+AGG	0.572811	8_3:+59993934	None:intergenic
TTCACTGGTAGTAGCAGTGG+TGG	0.572834	8_3:-59994528	Msa1299010:CDS
GTAGTAGTTCTAGTAGTGGT+GGG	0.574175	8_3:-59994494	Msa1299010:CDS
AGGTAGCCTTACTCTTCGGT+TGG	0.577834	8_3:-59993905	Msa1299010:CDS
AAATCCCAACGGTTCAGCCA+TGG	0.579557	8_3:-59995087	Msa1299010:exon
AAACGTGAATTGGAGAAAGT+GGG	0.580491	8_3:-59994675	Msa1299010:CDS
GCCGCTAACACCAAGAACCC+TGG	0.580532	8_3:-59995029	Msa1299010:CDS
AGGGTTCTTGGTGTTAGCGG+CGG	0.581566	8_3:+59995031	None:intergenic
CAGCAAATTGGACAATTGGA+TGG	0.582722	8_3:+59994090	None:intergenic
GAGACAGAAGCAAGTGTGCA+TGG	0.583579	8_3:-59993928	Msa1299010:CDS
GGACTGATAGGACTGTTTGA+CGG	0.584911	8_3:+59994591	None:intergenic
AACGGGTTCATTCTGTGAAG+AGG	0.588593	8_3:+59994335	None:intergenic
CCACCTGGACCCTCATTCTG+AGG	0.603248	8_3:-59995238	Msa1299010:five_prime_UTR
AGCAGTAGTAGTTCTAGTAG+TGG	0.604603	8_3:-59994498	Msa1299010:CDS
TAAATGGTTACATCCTGCCA+TGG	0.605167	8_3:-59993603	Msa1299010:three_prime_UTR
AGCTTTAAGGGAATATGCCA+TGG	0.606167	8_3:+59993586	None:intergenic
CGTGAACAATGGCTATCTCA+AGG	0.607296	8_3:-59994854	Msa1299010:intron
GGCGATTGAATCGGAAACCA+TGG	0.614198	8_3:+59995070	None:intergenic
CCTGCTCAAGAATCCTCTTG+TGG	0.614452	8_3:+59993998	None:intergenic
TGTTTCCCCACTGGCGACGA+CGG	0.617264	8_3:+59994702	None:intergenic
AGAGGCTCTATGCTTCTCAT+CGG	0.622264	8_3:+59994353	None:intergenic
GGCACAGACATGCGAGACCA+GGG	0.623059	8_3:+59994111	None:intergenic
AGCCGAAAACCACAATTGCA+CGG	0.626352	8_3:+59994033	None:intergenic
TTCGTTAGTTGTGTATGCTG+TGG	0.627569	8_3:-59993836	Msa1299010:three_prime_UTR
ACAGGTTGGGTAAAGTCTGA+GGG	0.629189	8_3:+59994178	None:intergenic
CCTCAGAATGAGGGTCCAGG+TGG	0.633172	8_3:+59995238	None:intergenic
AACGTGAATTGGAGAAAGTG+GGG	0.634840	8_3:-59994674	Msa1299010:CDS
CAAACCAGGGAGTGGTGGAA+CGG	0.635703	8_3:-59994253	Msa1299010:CDS
TCATATTGCTTCCTGCACCC+AGG	0.637371	8_3:+59993964	None:intergenic
AATTTCACTGGTAGTAGCAG+TGG	0.639931	8_3:-59994531	Msa1299010:CDS
GAAATCCGATAAAATCCACC+TGG	0.644433	8_3:-59995253	Msa1299010:five_prime_UTR
GAGATAACGAAAATGGATCA+CGG	0.646784	8_3:+59995186	None:intergenic
CAATTGTCCAATTTGCTGTG+AGG	0.649475	8_3:-59994085	Msa1299010:CDS
GGTGAAGAAGAAGGGTTGCA+AGG	0.653357	8_3:-59994751	Msa1299010:CDS
ATGTGCCGTCGTCGCCAGTG+GGG	0.653421	8_3:-59994707	Msa1299010:CDS
GGCGGAAGGAATCGGAACGG+CGG	0.658597	8_3:+59995049	None:intergenic
GTTCTGTTAGCATGATCGAA+AGG	0.664821	8_3:-59993879	Msa1299010:CDS
GGAACCCCTCCTACAAAACG+TGG	0.666447	8_3:+59994132	None:intergenic
TGGATGCTTGGATGATTGGG+AGG	0.674598	8_3:-59994397	Msa1299010:CDS
TTGCCATTACTGGATGCCCG+AGG	0.677388	8_3:+59994228	None:intergenic
GATGTTTGGATTCCAAACCA+GGG	0.680935	8_3:-59994266	Msa1299010:CDS
AGCGGCGGAAGGAATCGGAA+CGG	0.682697	8_3:+59995046	None:intergenic
TGGTATGTGAATACATAAGG+TGG	0.685753	8_3:-59993649	Msa1299010:three_prime_UTR
ACGTGAATTGGAGAAAGTGG+GGG	0.693905	8_3:-59994673	Msa1299010:CDS
TCGAAAATATCAAATCCCAA+CGG	0.697719	8_3:-59995098	Msa1299010:five_prime_UTR
TTAATGTAGAATACTCATGT+TGG	0.699610	8_3:-59993669	Msa1299010:three_prime_UTR
GGTTGGGTAAAGTCTGAGGG+CGG	0.713101	8_3:+59994181	None:intergenic
ACAGAAGCAAGTGTGCATGG+AGG	0.724066	8_3:-59993925	Msa1299010:CDS
CCTAATAGTAGTGTGTTGTG+TGG	0.739406	8_3:-59994570	Msa1299010:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAAAATTATATAATCGAAAT+TGG	+	chr8_3:59993765-59993784	None:intergenic	15.0%
!!!	TAATTTTGTTATCTTTGTTA+TGG	-	chr8_3:59993955-59993974	Msa1299010:CDS	15.0%
!!	ATTCAATACATTGAAATAAA+TGG	-	chr8_3:59995121-59995140	Msa1299010:five_prime_UTR	15.0%
!!	GAAAATTATATAATCGAAAT+TGG	+	chr8_3:59993765-59993784	None:intergenic	15.0%
!!!	TAATTTTGTTATCTTTGTTA+TGG	-	chr8_3:59993955-59993974	Msa1299010:CDS	15.0%
!!	ATTCAATACATTGAAATAAA+TGG	-	chr8_3:59995121-59995140	Msa1299010:five_prime_UTR	15.0%
!!	TTTTATCGGATTTCAGTTTA+CGG	+	chr8_3:59993481-59993500	None:intergenic	25.0%
!!!	CGATTTTTGTTTTGATCTAA+TGG	-	chr8_3:59993927-59993946	Msa1299010:CDS	25.0%
!!!	TTATCTTTGTTATGGTTTTC+AGG	-	chr8_3:59993963-59993982	Msa1299010:CDS	25.0%
!!	TTGGAACATCTAATTTTCAT+AGG	-	chr8_3:59994971-59994990	Msa1299010:intron	25.0%
!!	TTGTTTCTCATTTCATCTTA+TGG	-	chr8_3:59995040-59995059	Msa1299010:CDS	25.0%
!	TTAATGTAGAATACTCATGT+TGG	-	chr8_3:59995071-59995090	Msa1299010:CDS	25.0%
!!	TTTTATCGGATTTCAGTTTA+CGG	+	chr8_3:59993481-59993500	None:intergenic	25.0%
!!!	CGATTTTTGTTTTGATCTAA+TGG	-	chr8_3:59993927-59993946	Msa1299010:CDS	25.0%
!!!	TTATCTTTGTTATGGTTTTC+AGG	-	chr8_3:59993963-59993982	Msa1299010:CDS	25.0%
!!	TTGGAACATCTAATTTTCAT+AGG	-	chr8_3:59994971-59994990	Msa1299010:intron	25.0%
!!	TTGTTTCTCATTTCATCTTA+TGG	-	chr8_3:59995040-59995059	Msa1299010:CDS	25.0%
!	TTAATGTAGAATACTCATGT+TGG	-	chr8_3:59995071-59995090	Msa1299010:CDS	25.0%
	AGTTAGAGAGATAACGAAAA+TGG	+	chr8_3:59993564-59993583	None:intergenic	30.0%
	TTCTATCGTCTTCACAAATT+AGG	-	chr8_3:59993603-59993622	Msa1299010:three_prime_UTR	30.0%
	TCTATCGTCTTCACAAATTA+GGG	-	chr8_3:59993604-59993623	Msa1299010:three_prime_UTR	30.0%
	TCGAAAATATCAAATCCCAA+CGG	-	chr8_3:59993642-59993661	Msa1299010:three_prime_UTR	30.0%
!	AATTCGATTTTCAGACCAAT+AGG	-	chr8_3:59993827-59993846	Msa1299010:three_prime_UTR	30.0%
!	TGGTTTGAATTTAGGATGTT+TGG	-	chr8_3:59994460-59994479	Msa1299010:CDS	30.0%
!	CTAATTTTCATAGGTCTAGT+TGG	-	chr8_3:59994980-59994999	Msa1299010:intron	30.0%
	TGTTGGTATGTGAATACATA+AGG	-	chr8_3:59995088-59995107	Msa1299010:exon	30.0%
	ACTATAGACAAAATGTGAAG+TGG	+	chr8_3:59995181-59995200	None:intergenic	30.0%
	AGTTAGAGAGATAACGAAAA+TGG	+	chr8_3:59993564-59993583	None:intergenic	30.0%
	TTCTATCGTCTTCACAAATT+AGG	-	chr8_3:59993603-59993622	Msa1299010:three_prime_UTR	30.0%
	TCTATCGTCTTCACAAATTA+GGG	-	chr8_3:59993604-59993623	Msa1299010:three_prime_UTR	30.0%
	TCGAAAATATCAAATCCCAA+CGG	-	chr8_3:59993642-59993661	Msa1299010:three_prime_UTR	30.0%
!	AATTCGATTTTCAGACCAAT+AGG	-	chr8_3:59993827-59993846	Msa1299010:three_prime_UTR	30.0%
!	TGGTTTGAATTTAGGATGTT+TGG	-	chr8_3:59994460-59994479	Msa1299010:CDS	30.0%
!	CTAATTTTCATAGGTCTAGT+TGG	-	chr8_3:59994980-59994999	Msa1299010:intron	30.0%
	TGTTGGTATGTGAATACATA+AGG	-	chr8_3:59995088-59995107	Msa1299010:exon	30.0%
	ACTATAGACAAAATGTGAAG+TGG	+	chr8_3:59995181-59995200	None:intergenic	30.0%
	GAGATAACGAAAATGGATCA+CGG	+	chr8_3:59993557-59993576	None:intergenic	35.0%
	CTTATACTGCTTCAATTTCG+CGG	+	chr8_3:59993854-59993873	None:intergenic	35.0%
!!!	TTTGTTATGGTTTTCAGGTG+CGG	-	chr8_3:59993968-59993987	Msa1299010:CDS	35.0%
	AAACGTGAATTGGAGAAAGT+GGG	-	chr8_3:59994065-59994084	Msa1299010:CDS	35.0%
	ACACTACTATTAGGACTGAT+AGG	+	chr8_3:59994164-59994183	None:intergenic	35.0%
	TGAAGAAGAAGTAGAACATG+AGG	-	chr8_3:59994307-59994326	Msa1299010:CDS	35.0%
	GTGACTGATGGTTTGAATTT+AGG	-	chr8_3:59994452-59994471	Msa1299010:CDS	35.0%
	CTGTGAGGATCTTGATTTAA+CGG	-	chr8_3:59994670-59994689	Msa1299010:CDS	35.0%
	CGACGCAAATAATGCAAAAA+AGG	+	chr8_3:59994935-59994954	None:intergenic	35.0%
!	TCGTCTGTAATTTTCTAGGT+TGG	-	chr8_3:59994952-59994971	Msa1299010:intron	35.0%
!	TTCATAGGTCTAGTTGGTTT+AGG	-	chr8_3:59994986-59995005	Msa1299010:intron	35.0%
	TGGTATGTGAATACATAAGG+TGG	-	chr8_3:59995091-59995110	Msa1299010:five_prime_UTR	35.0%
!	ATGTGAAGTGGAAGCTTTAA+GGG	+	chr8_3:59995169-59995188	None:intergenic	35.0%
	AATGTGAAGTGGAAGCTTTA+AGG	+	chr8_3:59995170-59995189	None:intergenic	35.0%
	GAGATAACGAAAATGGATCA+CGG	+	chr8_3:59993557-59993576	None:intergenic	35.0%
	CTTATACTGCTTCAATTTCG+CGG	+	chr8_3:59993854-59993873	None:intergenic	35.0%
!!!	TTTGTTATGGTTTTCAGGTG+CGG	-	chr8_3:59993968-59993987	Msa1299010:CDS	35.0%
	AAACGTGAATTGGAGAAAGT+GGG	-	chr8_3:59994065-59994084	Msa1299010:CDS	35.0%
	ACACTACTATTAGGACTGAT+AGG	+	chr8_3:59994164-59994183	None:intergenic	35.0%
	TGAAGAAGAAGTAGAACATG+AGG	-	chr8_3:59994307-59994326	Msa1299010:CDS	35.0%
	GTGACTGATGGTTTGAATTT+AGG	-	chr8_3:59994452-59994471	Msa1299010:CDS	35.0%
	CTGTGAGGATCTTGATTTAA+CGG	-	chr8_3:59994670-59994689	Msa1299010:CDS	35.0%
	CGACGCAAATAATGCAAAAA+AGG	+	chr8_3:59994935-59994954	None:intergenic	35.0%
!	TCGTCTGTAATTTTCTAGGT+TGG	-	chr8_3:59994952-59994971	Msa1299010:intron	35.0%
!	TTCATAGGTCTAGTTGGTTT+AGG	-	chr8_3:59994986-59995005	Msa1299010:intron	35.0%
	TGGTATGTGAATACATAAGG+TGG	-	chr8_3:59995091-59995110	Msa1299010:five_prime_UTR	35.0%
!	ATGTGAAGTGGAAGCTTTAA+GGG	+	chr8_3:59995169-59995188	None:intergenic	35.0%
	AATGTGAAGTGGAAGCTTTA+AGG	+	chr8_3:59995170-59995189	None:intergenic	35.0%
	GAAATCCGATAAAATCCACC+TGG	-	chr8_3:59993487-59993506	Msa1299010:three_prime_UTR	40.0%
!	TTACCCTCTTCTTTTTGCCA+GGG	+	chr8_3:59993731-59993750	None:intergenic	40.0%
	GAAACAGAGCAAACGTGAAT+TGG	-	chr8_3:59994055-59994074	Msa1299010:CDS	40.0%
	CAAACGTGAATTGGAGAAAG+TGG	-	chr8_3:59994064-59994083	Msa1299010:CDS	40.0%
	AACGTGAATTGGAGAAAGTG+GGG	-	chr8_3:59994066-59994085	Msa1299010:CDS	40.0%
	GATCCATCAAGACAGTGATT+CGG	-	chr8_3:59994121-59994140	Msa1299010:CDS	40.0%
	CCACACAACACACTACTATT+AGG	+	chr8_3:59994173-59994192	None:intergenic	40.0%
	CCTAATAGTAGTGTGTTGTG+TGG	-	chr8_3:59994170-59994189	Msa1299010:CDS	40.0%
	AATTTCACTGGTAGTAGCAG+TGG	-	chr8_3:59994209-59994228	Msa1299010:CDS	40.0%
!!	AGCAGTAGTAGTTCTAGTAG+TGG	-	chr8_3:59994242-59994261	Msa1299010:CDS	40.0%
!!	AGTAGTAGTTCTAGTAGTGG+TGG	-	chr8_3:59994245-59994264	Msa1299010:CDS	40.0%
!!	GTAGTAGTTCTAGTAGTGGT+GGG	-	chr8_3:59994246-59994265	Msa1299010:CDS	40.0%
!	CTCTGGGAATATTACAGAAG+AGG	-	chr8_3:59994274-59994293	Msa1299010:CDS	40.0%
	AGAAGAAGTAGAACATGAGG+AGG	-	chr8_3:59994310-59994329	Msa1299010:CDS	40.0%
!!	ATGATGGATGCTTGGATGAT+TGG	-	chr8_3:59994339-59994358	Msa1299010:CDS	40.0%
!	TGATGGATGCTTGGATGATT+GGG	-	chr8_3:59994340-59994359	Msa1299010:CDS	40.0%
	AGATGAATCCGTTTCTGCAA+CGG	+	chr8_3:59994426-59994445	None:intergenic	40.0%
	TCATCTTGTGAAGTGACTGA+TGG	-	chr8_3:59994440-59994459	Msa1299010:CDS	40.0%
	GATGTTTGGATTCCAAACCA+GGG	-	chr8_3:59994474-59994493	Msa1299010:CDS	40.0%
	CAGCAAATTGGACAATTGGA+TGG	+	chr8_3:59994653-59994672	None:intergenic	40.0%
	CTCACAGCAAATTGGACAAT+TGG	+	chr8_3:59994657-59994676	None:intergenic	40.0%
!!	CAATTGTCCAATTTGCTGTG+AGG	-	chr8_3:59994655-59994674	Msa1299010:CDS	40.0%
	TCAAGATCCTCACAGCAAAT+TGG	+	chr8_3:59994665-59994684	None:intergenic	40.0%
!	AGTTTTCTTCCGTGCAATTG+TGG	-	chr8_3:59994698-59994717	Msa1299010:CDS	40.0%
!	TTCCGTGCAATTGTGGTTTT+CGG	-	chr8_3:59994705-59994724	Msa1299010:CDS	40.0%
!	TTTGTCTCTTTTGCCACAAG+AGG	-	chr8_3:59994729-59994748	Msa1299010:CDS	40.0%
	GTTCTGTTAGCATGATCGAA+AGG	-	chr8_3:59994861-59994880	Msa1299010:CDS	40.0%
	TTCGTTAGTTGTGTATGCTG+TGG	-	chr8_3:59994904-59994923	Msa1299010:intron	40.0%
!	TGCGTCGTCTGTAATTTTCT+AGG	-	chr8_3:59994948-59994967	Msa1299010:intron	40.0%
	TAAATGGTTACATCCTGCCA+TGG	-	chr8_3:59995137-59995156	Msa1299010:five_prime_UTR	40.0%
!!	AGCTTTAAGGGAATATGCCA+TGG	+	chr8_3:59995157-59995176	None:intergenic	40.0%
!	ACGCTGCAAAATGATGGAAT+TGG	+	chr8_3:59995213-59995232	None:intergenic	40.0%
	GAAATCCGATAAAATCCACC+TGG	-	chr8_3:59993487-59993506	Msa1299010:three_prime_UTR	40.0%
!	TTACCCTCTTCTTTTTGCCA+GGG	+	chr8_3:59993731-59993750	None:intergenic	40.0%
	GAAACAGAGCAAACGTGAAT+TGG	-	chr8_3:59994055-59994074	Msa1299010:CDS	40.0%
	CAAACGTGAATTGGAGAAAG+TGG	-	chr8_3:59994064-59994083	Msa1299010:CDS	40.0%
	AACGTGAATTGGAGAAAGTG+GGG	-	chr8_3:59994066-59994085	Msa1299010:CDS	40.0%
	GATCCATCAAGACAGTGATT+CGG	-	chr8_3:59994121-59994140	Msa1299010:CDS	40.0%
	CCACACAACACACTACTATT+AGG	+	chr8_3:59994173-59994192	None:intergenic	40.0%
	CCTAATAGTAGTGTGTTGTG+TGG	-	chr8_3:59994170-59994189	Msa1299010:CDS	40.0%
	AATTTCACTGGTAGTAGCAG+TGG	-	chr8_3:59994209-59994228	Msa1299010:CDS	40.0%
!!	AGCAGTAGTAGTTCTAGTAG+TGG	-	chr8_3:59994242-59994261	Msa1299010:CDS	40.0%
!!	AGTAGTAGTTCTAGTAGTGG+TGG	-	chr8_3:59994245-59994264	Msa1299010:CDS	40.0%
!!	GTAGTAGTTCTAGTAGTGGT+GGG	-	chr8_3:59994246-59994265	Msa1299010:CDS	40.0%
!	CTCTGGGAATATTACAGAAG+AGG	-	chr8_3:59994274-59994293	Msa1299010:CDS	40.0%
	AGAAGAAGTAGAACATGAGG+AGG	-	chr8_3:59994310-59994329	Msa1299010:CDS	40.0%
!!	ATGATGGATGCTTGGATGAT+TGG	-	chr8_3:59994339-59994358	Msa1299010:CDS	40.0%
!	TGATGGATGCTTGGATGATT+GGG	-	chr8_3:59994340-59994359	Msa1299010:CDS	40.0%
	AGATGAATCCGTTTCTGCAA+CGG	+	chr8_3:59994426-59994445	None:intergenic	40.0%
	TCATCTTGTGAAGTGACTGA+TGG	-	chr8_3:59994440-59994459	Msa1299010:CDS	40.0%
	GATGTTTGGATTCCAAACCA+GGG	-	chr8_3:59994474-59994493	Msa1299010:CDS	40.0%
	CAGCAAATTGGACAATTGGA+TGG	+	chr8_3:59994653-59994672	None:intergenic	40.0%
	CTCACAGCAAATTGGACAAT+TGG	+	chr8_3:59994657-59994676	None:intergenic	40.0%
!!	CAATTGTCCAATTTGCTGTG+AGG	-	chr8_3:59994655-59994674	Msa1299010:CDS	40.0%
	TCAAGATCCTCACAGCAAAT+TGG	+	chr8_3:59994665-59994684	None:intergenic	40.0%
!	AGTTTTCTTCCGTGCAATTG+TGG	-	chr8_3:59994698-59994717	Msa1299010:CDS	40.0%
!	TTCCGTGCAATTGTGGTTTT+CGG	-	chr8_3:59994705-59994724	Msa1299010:CDS	40.0%
!	TTTGTCTCTTTTGCCACAAG+AGG	-	chr8_3:59994729-59994748	Msa1299010:CDS	40.0%
	GTTCTGTTAGCATGATCGAA+AGG	-	chr8_3:59994861-59994880	Msa1299010:CDS	40.0%
	TTCGTTAGTTGTGTATGCTG+TGG	-	chr8_3:59994904-59994923	Msa1299010:intron	40.0%
!	TGCGTCGTCTGTAATTTTCT+AGG	-	chr8_3:59994948-59994967	Msa1299010:intron	40.0%
	TAAATGGTTACATCCTGCCA+TGG	-	chr8_3:59995137-59995156	Msa1299010:five_prime_UTR	40.0%
!!	AGCTTTAAGGGAATATGCCA+TGG	+	chr8_3:59995157-59995176	None:intergenic	40.0%
!	ACGCTGCAAAATGATGGAAT+TGG	+	chr8_3:59995213-59995232	None:intergenic	40.0%
!!	AGGGTCCAGGTGGATTTTAT+CGG	+	chr8_3:59993495-59993514	None:intergenic	45.0%
!!	ACCCTCATTCTGAGGCAAAA+AGG	-	chr8_3:59993510-59993529	Msa1299010:three_prime_UTR	45.0%
!	CCCTTTTTGCCTCAGAATGA+GGG	+	chr8_3:59993514-59993533	None:intergenic	45.0%
!!	CCCTCATTCTGAGGCAAAAA+GGG	-	chr8_3:59993511-59993530	Msa1299010:three_prime_UTR	45.0%
!	CTTCTTTTTGCCAGGGTTCT+TGG	+	chr8_3:59993724-59993743	None:intergenic	45.0%
	AGAACCCTGGCAAAAAGAAG+AGG	-	chr8_3:59993724-59993743	Msa1299010:three_prime_UTR	45.0%
	GAACCCTGGCAAAAAGAAGA+GGG	-	chr8_3:59993725-59993744	Msa1299010:three_prime_UTR	45.0%
!	CTTACCCTCTTCTTTTTGCC+AGG	+	chr8_3:59993732-59993751	None:intergenic	45.0%
	CTGGCAAAAAGAAGAGGGTA+AGG	-	chr8_3:59993730-59993749	Msa1299010:three_prime_UTR	45.0%
	CTTCAATTTCGCGGACCTAT+TGG	+	chr8_3:59993845-59993864	None:intergenic	45.0%
	CGTGAACAATGGCTATCTCA+AGG	-	chr8_3:59993886-59993905	Msa1299010:CDS	45.0%
	AAGAAGAAGGGTTGCAAGGA+TGG	-	chr8_3:59993993-59994012	Msa1299010:CDS	45.0%
	ACGTGAATTGGAGAAAGTGG+GGG	-	chr8_3:59994067-59994086	Msa1299010:CDS	45.0%
	ACTCCGAATCACTGTCTTGA+TGG	+	chr8_3:59994127-59994146	None:intergenic	45.0%
	GGACTGATAGGACTGTTTGA+CGG	+	chr8_3:59994152-59994171	None:intergenic	45.0%
	GTGTTGTGTGGCAATGATTC+CGG	-	chr8_3:59994182-59994201	Msa1299010:CDS	45.0%
	TGTTGTGTGGCAATGATTCC+GGG	-	chr8_3:59994183-59994202	Msa1299010:CDS	45.0%
	ACTACCAGTGAAATTCGTCC+CGG	+	chr8_3:59994204-59994223	None:intergenic	45.0%
	AGAAGTAGAACATGAGGAGG+AGG	-	chr8_3:59994313-59994332	Msa1299010:CDS	45.0%
	AGAGGCTCTATGCTTCTCAT+CGG	+	chr8_3:59994390-59994409	None:intergenic	45.0%
!	AACGGGTTCATTCTGTGAAG+AGG	+	chr8_3:59994408-59994427	None:intergenic	45.0%
	GAATGAACCCGTTGCAGAAA+CGG	-	chr8_3:59994415-59994434	Msa1299010:CDS	45.0%
	GATGAATCCGTTTCTGCAAC+GGG	+	chr8_3:59994425-59994444	None:intergenic	45.0%
	GGATGTTTGGATTCCAAACC+AGG	-	chr8_3:59994473-59994492	Msa1299010:CDS	45.0%
	CATCCAGTAATGGCAAAGCT+TGG	-	chr8_3:59994519-59994538	Msa1299010:CDS	45.0%
	CAGTAATGGCAAAGCTTGGA+GGG	-	chr8_3:59994523-59994542	Msa1299010:CDS	45.0%
!	ACAGGTTGGGTAAAGTCTGA+GGG	+	chr8_3:59994565-59994584	None:intergenic	45.0%
!!	CTATGCTGTTTCGACAGGTT+GGG	+	chr8_3:59994578-59994597	None:intergenic	45.0%
!!	ACTATGCTGTTTCGACAGGT+TGG	+	chr8_3:59994579-59994598	None:intergenic	45.0%
!!	GCATACTATGCTGTTTCGAC+AGG	+	chr8_3:59994583-59994602	None:intergenic	45.0%
!	ATGCCGAATCCACGTTTTGT+AGG	-	chr8_3:59994599-59994618	Msa1299010:CDS	45.0%
	CCTCCTACAAAACGTGGATT+CGG	+	chr8_3:59994605-59994624	None:intergenic	45.0%
!	CGAATCCACGTTTTGTAGGA+GGG	-	chr8_3:59994603-59994622	Msa1299010:CDS	45.0%
!	GAATCCACGTTTTGTAGGAG+GGG	-	chr8_3:59994604-59994623	Msa1299010:CDS	45.0%
	AGCCGAAAACCACAATTGCA+CGG	+	chr8_3:59994710-59994729	None:intergenic	45.0%
	ACACTTGCTTCTGTCTCGAT+AGG	+	chr8_3:59994809-59994828	None:intergenic	45.0%
!	ATGGAGGTAGCCTTACTCTT+CGG	-	chr8_3:59994831-59994850	Msa1299010:intron	45.0%
	TTAAGGGAATATGCCATGGC+AGG	+	chr8_3:59995153-59995172	None:intergenic	45.0%
	ACAACGACGCTGCAAAATGA+TGG	+	chr8_3:59995219-59995238	None:intergenic	45.0%
!!	AGGGTCCAGGTGGATTTTAT+CGG	+	chr8_3:59993495-59993514	None:intergenic	45.0%
!!	ACCCTCATTCTGAGGCAAAA+AGG	-	chr8_3:59993510-59993529	Msa1299010:three_prime_UTR	45.0%
!	CCCTTTTTGCCTCAGAATGA+GGG	+	chr8_3:59993514-59993533	None:intergenic	45.0%
!!	CCCTCATTCTGAGGCAAAAA+GGG	-	chr8_3:59993511-59993530	Msa1299010:three_prime_UTR	45.0%
!	CTTCTTTTTGCCAGGGTTCT+TGG	+	chr8_3:59993724-59993743	None:intergenic	45.0%
	AGAACCCTGGCAAAAAGAAG+AGG	-	chr8_3:59993724-59993743	Msa1299010:three_prime_UTR	45.0%
	GAACCCTGGCAAAAAGAAGA+GGG	-	chr8_3:59993725-59993744	Msa1299010:three_prime_UTR	45.0%
!	CTTACCCTCTTCTTTTTGCC+AGG	+	chr8_3:59993732-59993751	None:intergenic	45.0%
	CTGGCAAAAAGAAGAGGGTA+AGG	-	chr8_3:59993730-59993749	Msa1299010:three_prime_UTR	45.0%
	CTTCAATTTCGCGGACCTAT+TGG	+	chr8_3:59993845-59993864	None:intergenic	45.0%
	CGTGAACAATGGCTATCTCA+AGG	-	chr8_3:59993886-59993905	Msa1299010:CDS	45.0%
	AAGAAGAAGGGTTGCAAGGA+TGG	-	chr8_3:59993993-59994012	Msa1299010:CDS	45.0%
	ACGTGAATTGGAGAAAGTGG+GGG	-	chr8_3:59994067-59994086	Msa1299010:CDS	45.0%
	ACTCCGAATCACTGTCTTGA+TGG	+	chr8_3:59994127-59994146	None:intergenic	45.0%
	GGACTGATAGGACTGTTTGA+CGG	+	chr8_3:59994152-59994171	None:intergenic	45.0%
	GTGTTGTGTGGCAATGATTC+CGG	-	chr8_3:59994182-59994201	Msa1299010:CDS	45.0%
	TGTTGTGTGGCAATGATTCC+GGG	-	chr8_3:59994183-59994202	Msa1299010:CDS	45.0%
	ACTACCAGTGAAATTCGTCC+CGG	+	chr8_3:59994204-59994223	None:intergenic	45.0%
	AGAAGTAGAACATGAGGAGG+AGG	-	chr8_3:59994313-59994332	Msa1299010:CDS	45.0%
	AGAGGCTCTATGCTTCTCAT+CGG	+	chr8_3:59994390-59994409	None:intergenic	45.0%
!	AACGGGTTCATTCTGTGAAG+AGG	+	chr8_3:59994408-59994427	None:intergenic	45.0%
	GAATGAACCCGTTGCAGAAA+CGG	-	chr8_3:59994415-59994434	Msa1299010:CDS	45.0%
	GATGAATCCGTTTCTGCAAC+GGG	+	chr8_3:59994425-59994444	None:intergenic	45.0%
	GGATGTTTGGATTCCAAACC+AGG	-	chr8_3:59994473-59994492	Msa1299010:CDS	45.0%
	CATCCAGTAATGGCAAAGCT+TGG	-	chr8_3:59994519-59994538	Msa1299010:CDS	45.0%
	CAGTAATGGCAAAGCTTGGA+GGG	-	chr8_3:59994523-59994542	Msa1299010:CDS	45.0%
!	ACAGGTTGGGTAAAGTCTGA+GGG	+	chr8_3:59994565-59994584	None:intergenic	45.0%
!!	CTATGCTGTTTCGACAGGTT+GGG	+	chr8_3:59994578-59994597	None:intergenic	45.0%
!!	ACTATGCTGTTTCGACAGGT+TGG	+	chr8_3:59994579-59994598	None:intergenic	45.0%
!!	GCATACTATGCTGTTTCGAC+AGG	+	chr8_3:59994583-59994602	None:intergenic	45.0%
!	ATGCCGAATCCACGTTTTGT+AGG	-	chr8_3:59994599-59994618	Msa1299010:CDS	45.0%
	CCTCCTACAAAACGTGGATT+CGG	+	chr8_3:59994605-59994624	None:intergenic	45.0%
!	CGAATCCACGTTTTGTAGGA+GGG	-	chr8_3:59994603-59994622	Msa1299010:CDS	45.0%
!	GAATCCACGTTTTGTAGGAG+GGG	-	chr8_3:59994604-59994623	Msa1299010:CDS	45.0%
	AGCCGAAAACCACAATTGCA+CGG	+	chr8_3:59994710-59994729	None:intergenic	45.0%
	ACACTTGCTTCTGTCTCGAT+AGG	+	chr8_3:59994809-59994828	None:intergenic	45.0%
!	ATGGAGGTAGCCTTACTCTT+CGG	-	chr8_3:59994831-59994850	Msa1299010:intron	45.0%
	TTAAGGGAATATGCCATGGC+AGG	+	chr8_3:59995153-59995172	None:intergenic	45.0%
	ACAACGACGCTGCAAAATGA+TGG	+	chr8_3:59995219-59995238	None:intergenic	45.0%
!	GCCCTTTTTGCCTCAGAATG+AGG	+	chr8_3:59993515-59993534	None:intergenic	50.0%
!	TCTGAGGCAAAAAGGGCGAA+AGG	-	chr8_3:59993518-59993537	Msa1299010:three_prime_UTR	50.0%
	AAATCCCAACGGTTCAGCCA+TGG	-	chr8_3:59993653-59993672	Msa1299010:three_prime_UTR	50.0%
	GAAACCATGGCTGAACCGTT+GGG	+	chr8_3:59993660-59993679	None:intergenic	50.0%
	GGCGATTGAATCGGAAACCA+TGG	+	chr8_3:59993673-59993692	None:intergenic	50.0%
	TTGATGCGCGTCGTGAACAA+TGG	-	chr8_3:59993875-59993894	Msa1299010:CDS	50.0%
	TTCAGGTGCGGTGAAGAAGA+AGG	-	chr8_3:59993980-59993999	Msa1299010:CDS	50.0%
	TCAGGTGCGGTGAAGAAGAA+GGG	-	chr8_3:59993981-59994000	Msa1299010:CDS	50.0%
	GGTGAAGAAGAAGGGTTGCA+AGG	-	chr8_3:59993989-59994008	Msa1299010:CDS	50.0%
	GAAGGGTTGCAAGGATGGAT+TGG	-	chr8_3:59993998-59994017	Msa1299010:CDS	50.0%
	GATTCCGGGACGAATTTCAC+TGG	-	chr8_3:59994197-59994216	Msa1299010:CDS	50.0%
	TTCACTGGTAGTAGCAGTGG+TGG	-	chr8_3:59994212-59994231	Msa1299010:CDS	50.0%
!!	AGTAGTGGTGGGTGTTTCTC+TGG	-	chr8_3:59994257-59994276	Msa1299010:CDS	50.0%
!!	GTAGTGGTGGGTGTTTCTCT+GGG	-	chr8_3:59994258-59994277	Msa1299010:CDS	50.0%
	CATGAGGAGGAGGATGATGA+TGG	-	chr8_3:59994323-59994342	Msa1299010:CDS	50.0%
!!	GGAGGATGATGATGGATGCT+TGG	-	chr8_3:59994331-59994350	Msa1299010:CDS	50.0%
	TGGATGCTTGGATGATTGGG+AGG	-	chr8_3:59994343-59994362	Msa1299010:CDS	50.0%
	TTGGATTCCAAACCAGGGAG+TGG	-	chr8_3:59994479-59994498	Msa1299010:CDS	50.0%
	CCTCCAAGCTTTGCCATTAC+TGG	+	chr8_3:59994525-59994544	None:intergenic	50.0%
	CCAGTAATGGCAAAGCTTGG+AGG	-	chr8_3:59994522-59994541	Msa1299010:CDS	50.0%
!	GACAGGTTGGGTAAAGTCTG+AGG	+	chr8_3:59994566-59994585	None:intergenic	50.0%
!	CCGAATCCACGTTTTGTAGG+AGG	-	chr8_3:59994602-59994621	Msa1299010:CDS	50.0%
	CCTGCTCAAGAATCCTCTTG+TGG	+	chr8_3:59994745-59994764	None:intergenic	50.0%
	CCACAAGAGGATTCTTGAGC+AGG	-	chr8_3:59994742-59994761	Msa1299010:CDS	50.0%
	TCATATTGCTTCCTGCACCC+AGG	+	chr8_3:59994779-59994798	None:intergenic	50.0%
	GAGACAGAAGCAAGTGTGCA+TGG	-	chr8_3:59994812-59994831	Msa1299010:intron	50.0%
	ACAGAAGCAAGTGTGCATGG+AGG	-	chr8_3:59994815-59994834	Msa1299010:intron	50.0%
!	AGGTAGCCTTACTCTTCGGT+TGG	-	chr8_3:59994835-59994854	Msa1299010:intron	50.0%
	AACGAGCCAACCGAAGAGTA+AGG	+	chr8_3:59994844-59994863	None:intergenic	50.0%
!	GCCCTTTTTGCCTCAGAATG+AGG	+	chr8_3:59993515-59993534	None:intergenic	50.0%
!	TCTGAGGCAAAAAGGGCGAA+AGG	-	chr8_3:59993518-59993537	Msa1299010:three_prime_UTR	50.0%
	AAATCCCAACGGTTCAGCCA+TGG	-	chr8_3:59993653-59993672	Msa1299010:three_prime_UTR	50.0%
	GAAACCATGGCTGAACCGTT+GGG	+	chr8_3:59993660-59993679	None:intergenic	50.0%
	GGCGATTGAATCGGAAACCA+TGG	+	chr8_3:59993673-59993692	None:intergenic	50.0%
	TTGATGCGCGTCGTGAACAA+TGG	-	chr8_3:59993875-59993894	Msa1299010:CDS	50.0%
	TTCAGGTGCGGTGAAGAAGA+AGG	-	chr8_3:59993980-59993999	Msa1299010:CDS	50.0%
	TCAGGTGCGGTGAAGAAGAA+GGG	-	chr8_3:59993981-59994000	Msa1299010:CDS	50.0%
	GGTGAAGAAGAAGGGTTGCA+AGG	-	chr8_3:59993989-59994008	Msa1299010:CDS	50.0%
	GAAGGGTTGCAAGGATGGAT+TGG	-	chr8_3:59993998-59994017	Msa1299010:CDS	50.0%
	GATTCCGGGACGAATTTCAC+TGG	-	chr8_3:59994197-59994216	Msa1299010:CDS	50.0%
	TTCACTGGTAGTAGCAGTGG+TGG	-	chr8_3:59994212-59994231	Msa1299010:CDS	50.0%
!!	AGTAGTGGTGGGTGTTTCTC+TGG	-	chr8_3:59994257-59994276	Msa1299010:CDS	50.0%
!!	GTAGTGGTGGGTGTTTCTCT+GGG	-	chr8_3:59994258-59994277	Msa1299010:CDS	50.0%
	CATGAGGAGGAGGATGATGA+TGG	-	chr8_3:59994323-59994342	Msa1299010:CDS	50.0%
!!	GGAGGATGATGATGGATGCT+TGG	-	chr8_3:59994331-59994350	Msa1299010:CDS	50.0%
	TGGATGCTTGGATGATTGGG+AGG	-	chr8_3:59994343-59994362	Msa1299010:CDS	50.0%
	TTGGATTCCAAACCAGGGAG+TGG	-	chr8_3:59994479-59994498	Msa1299010:CDS	50.0%
	CCTCCAAGCTTTGCCATTAC+TGG	+	chr8_3:59994525-59994544	None:intergenic	50.0%
	CCAGTAATGGCAAAGCTTGG+AGG	-	chr8_3:59994522-59994541	Msa1299010:CDS	50.0%
!	GACAGGTTGGGTAAAGTCTG+AGG	+	chr8_3:59994566-59994585	None:intergenic	50.0%
!	CCGAATCCACGTTTTGTAGG+AGG	-	chr8_3:59994602-59994621	Msa1299010:CDS	50.0%
	CCTGCTCAAGAATCCTCTTG+TGG	+	chr8_3:59994745-59994764	None:intergenic	50.0%
	CCACAAGAGGATTCTTGAGC+AGG	-	chr8_3:59994742-59994761	Msa1299010:CDS	50.0%
	TCATATTGCTTCCTGCACCC+AGG	+	chr8_3:59994779-59994798	None:intergenic	50.0%
	GAGACAGAAGCAAGTGTGCA+TGG	-	chr8_3:59994812-59994831	Msa1299010:intron	50.0%
	ACAGAAGCAAGTGTGCATGG+AGG	-	chr8_3:59994815-59994834	Msa1299010:intron	50.0%
!	AGGTAGCCTTACTCTTCGGT+TGG	-	chr8_3:59994835-59994854	Msa1299010:intron	50.0%
	AACGAGCCAACCGAAGAGTA+AGG	+	chr8_3:59994844-59994863	None:intergenic	50.0%
	TTGCCTCAGAATGAGGGTCC+AGG	+	chr8_3:59993508-59993527	None:intergenic	55.0%
	GGAAACCATGGCTGAACCGT+TGG	+	chr8_3:59993661-59993680	None:intergenic	55.0%
	GTGTTAGCGGCGGAAGGAAT+CGG	+	chr8_3:59993702-59993721	None:intergenic	55.0%
!!	TTCTTGGTGTTAGCGGCGGA+AGG	+	chr8_3:59993708-59993727	None:intergenic	55.0%
!!	AGGGTTCTTGGTGTTAGCGG+CGG	+	chr8_3:59993712-59993731	None:intergenic	55.0%
!!	GCCAGGGTTCTTGGTGTTAG+CGG	+	chr8_3:59993715-59993734	None:intergenic	55.0%
	CGTTTGCTCTGTTTCCCCAC+TGG	+	chr8_3:59994050-59994069	None:intergenic	55.0%
	AATTGGAGAAAGTGGGGGCG+AGG	-	chr8_3:59994072-59994091	Msa1299010:CDS	55.0%
	CTTGGATGATTGGGAGGCTG+TGG	-	chr8_3:59994349-59994368	Msa1299010:CDS	55.0%
	GGCTCTATGCTTCTCATCGG+CGG	+	chr8_3:59994387-59994406	None:intergenic	55.0%
	GATTCCAAACCAGGGAGTGG+TGG	-	chr8_3:59994482-59994501	Msa1299010:CDS	55.0%
!	CAAACCAGGGAGTGGTGGAA+CGG	-	chr8_3:59994487-59994506	Msa1299010:CDS	55.0%
	GTTCCTCGGGCATCCAGTAA+TGG	-	chr8_3:59994509-59994528	Msa1299010:CDS	55.0%
	TTGCCATTACTGGATGCCCG+AGG	+	chr8_3:59994515-59994534	None:intergenic	55.0%
	GGTTGGGTAAAGTCTGAGGG+CGG	+	chr8_3:59994562-59994581	None:intergenic	55.0%
	GGAACCCCTCCTACAAAACG+TGG	+	chr8_3:59994611-59994630	None:intergenic	55.0%
!	GTTTTGTAGGAGGGGTTCCC+TGG	-	chr8_3:59994612-59994631	Msa1299010:CDS	55.0%
	AGCAGGATGCTCGTTGTCCT+GGG	-	chr8_3:59994759-59994778	Msa1299010:intron	55.0%
	TTGCCTCAGAATGAGGGTCC+AGG	+	chr8_3:59993508-59993527	None:intergenic	55.0%
	GGAAACCATGGCTGAACCGT+TGG	+	chr8_3:59993661-59993680	None:intergenic	55.0%
	GTGTTAGCGGCGGAAGGAAT+CGG	+	chr8_3:59993702-59993721	None:intergenic	55.0%
!!	TTCTTGGTGTTAGCGGCGGA+AGG	+	chr8_3:59993708-59993727	None:intergenic	55.0%
!!	AGGGTTCTTGGTGTTAGCGG+CGG	+	chr8_3:59993712-59993731	None:intergenic	55.0%
!!	GCCAGGGTTCTTGGTGTTAG+CGG	+	chr8_3:59993715-59993734	None:intergenic	55.0%
	CGTTTGCTCTGTTTCCCCAC+TGG	+	chr8_3:59994050-59994069	None:intergenic	55.0%
	AATTGGAGAAAGTGGGGGCG+AGG	-	chr8_3:59994072-59994091	Msa1299010:CDS	55.0%
	CTTGGATGATTGGGAGGCTG+TGG	-	chr8_3:59994349-59994368	Msa1299010:CDS	55.0%
	GGCTCTATGCTTCTCATCGG+CGG	+	chr8_3:59994387-59994406	None:intergenic	55.0%
	GATTCCAAACCAGGGAGTGG+TGG	-	chr8_3:59994482-59994501	Msa1299010:CDS	55.0%
!	CAAACCAGGGAGTGGTGGAA+CGG	-	chr8_3:59994487-59994506	Msa1299010:CDS	55.0%
	GTTCCTCGGGCATCCAGTAA+TGG	-	chr8_3:59994509-59994528	Msa1299010:CDS	55.0%
	TTGCCATTACTGGATGCCCG+AGG	+	chr8_3:59994515-59994534	None:intergenic	55.0%
	GGTTGGGTAAAGTCTGAGGG+CGG	+	chr8_3:59994562-59994581	None:intergenic	55.0%
	GGAACCCCTCCTACAAAACG+TGG	+	chr8_3:59994611-59994630	None:intergenic	55.0%
!	GTTTTGTAGGAGGGGTTCCC+TGG	-	chr8_3:59994612-59994631	Msa1299010:CDS	55.0%
	AGCAGGATGCTCGTTGTCCT+GGG	-	chr8_3:59994759-59994778	Msa1299010:intron	55.0%
	CCTCAGAATGAGGGTCCAGG+TGG	+	chr8_3:59993505-59993524	None:intergenic	60.0%
	CCACCTGGACCCTCATTCTG+AGG	-	chr8_3:59993502-59993521	Msa1299010:three_prime_UTR	60.0%
	CGGAACGGCGGCGATTGAAT+CGG	+	chr8_3:59993682-59993701	None:intergenic	60.0%
	AGCGGCGGAAGGAATCGGAA+CGG	+	chr8_3:59993697-59993716	None:intergenic	60.0%
	GCCGCTAACACCAAGAACCC+TGG	-	chr8_3:59993711-59993730	Msa1299010:three_prime_UTR	60.0%
	TGTTTCCCCACTGGCGACGA+CGG	+	chr8_3:59994041-59994060	None:intergenic	60.0%
	CGTTCCACCACTCCCTGGTT+TGG	+	chr8_3:59994489-59994508	None:intergenic	60.0%
!	GGAGTGGTGGAACGGTTCCT+CGG	-	chr8_3:59994495-59994514	Msa1299010:CDS	60.0%
!	GAGTGGTGGAACGGTTCCTC+GGG	-	chr8_3:59994496-59994515	Msa1299010:CDS	60.0%
	GGCACAGACATGCGAGACCA+GGG	+	chr8_3:59994632-59994651	None:intergenic	60.0%
	TGGCACAGACATGCGAGACC+AGG	+	chr8_3:59994633-59994652	None:intergenic	60.0%
	GAGCAGGATGCTCGTTGTCC+TGG	-	chr8_3:59994758-59994777	Msa1299010:CDS	60.0%
	ATGCTCGTTGTCCTGGGTGC+AGG	-	chr8_3:59994765-59994784	Msa1299010:intron	60.0%
	CCTCAGAATGAGGGTCCAGG+TGG	+	chr8_3:59993505-59993524	None:intergenic	60.0%
	CCACCTGGACCCTCATTCTG+AGG	-	chr8_3:59993502-59993521	Msa1299010:three_prime_UTR	60.0%
	CGGAACGGCGGCGATTGAAT+CGG	+	chr8_3:59993682-59993701	None:intergenic	60.0%
	AGCGGCGGAAGGAATCGGAA+CGG	+	chr8_3:59993697-59993716	None:intergenic	60.0%
	GCCGCTAACACCAAGAACCC+TGG	-	chr8_3:59993711-59993730	Msa1299010:three_prime_UTR	60.0%
	TGTTTCCCCACTGGCGACGA+CGG	+	chr8_3:59994041-59994060	None:intergenic	60.0%
	CGTTCCACCACTCCCTGGTT+TGG	+	chr8_3:59994489-59994508	None:intergenic	60.0%
!	GGAGTGGTGGAACGGTTCCT+CGG	-	chr8_3:59994495-59994514	Msa1299010:CDS	60.0%
!	GAGTGGTGGAACGGTTCCTC+GGG	-	chr8_3:59994496-59994515	Msa1299010:CDS	60.0%
	GGCACAGACATGCGAGACCA+GGG	+	chr8_3:59994632-59994651	None:intergenic	60.0%
	TGGCACAGACATGCGAGACC+AGG	+	chr8_3:59994633-59994652	None:intergenic	60.0%
	GAGCAGGATGCTCGTTGTCC+TGG	-	chr8_3:59994758-59994777	Msa1299010:CDS	60.0%
	ATGCTCGTTGTCCTGGGTGC+AGG	-	chr8_3:59994765-59994784	Msa1299010:intron	60.0%
	GGCGGAAGGAATCGGAACGG+CGG	+	chr8_3:59993694-59993713	None:intergenic	65.0%
	CATGTGCCGTCGTCGCCAGT+GGG	-	chr8_3:59994032-59994051	Msa1299010:CDS	65.0%
	ATGTGCCGTCGTCGCCAGTG+GGG	-	chr8_3:59994033-59994052	Msa1299010:CDS	65.0%
	AAAGTGGGGGCGAGGCGTAG+AGG	-	chr8_3:59994080-59994099	Msa1299010:CDS	65.0%
	GGAACCGTTCCACCACTCCC+TGG	+	chr8_3:59994494-59994513	None:intergenic	65.0%
	GGCGGAAGGAATCGGAACGG+CGG	+	chr8_3:59993694-59993713	None:intergenic	65.0%
	CATGTGCCGTCGTCGCCAGT+GGG	-	chr8_3:59994032-59994051	Msa1299010:CDS	65.0%
	ATGTGCCGTCGTCGCCAGTG+GGG	-	chr8_3:59994033-59994052	Msa1299010:CDS	65.0%
	AAAGTGGGGGCGAGGCGTAG+AGG	-	chr8_3:59994080-59994099	Msa1299010:CDS	65.0%
	GGAACCGTTCCACCACTCCC+TGG	+	chr8_3:59994494-59994513	None:intergenic	65.0%
	CCACTGGCGACGACGGCACA+TGG	+	chr8_3:59994034-59994053	None:intergenic	70.0%
	CCATGTGCCGTCGTCGCCAG+TGG	-	chr8_3:59994031-59994050	Msa1299010:CDS	70.0%
	GGCGAGGCGTAGAGGTGGAG+AGG	-	chr8_3:59994088-59994107	Msa1299010:CDS	70.0%
	CCACTGGCGACGACGGCACA+TGG	+	chr8_3:59994034-59994053	None:intergenic	70.0%
	CCATGTGCCGTCGTCGCCAG+TGG	-	chr8_3:59994031-59994050	Msa1299010:CDS	70.0%
	GGCGAGGCGTAGAGGTGGAG+AGG	-	chr8_3:59994088-59994107	Msa1299010:CDS	70.0%
	GTGGGGGCGAGGCGTAGAGG+TGG	-	chr8_3:59994083-59994102	Msa1299010:CDS	75.0%
	GTGGGGGCGAGGCGTAGAGG+TGG	-	chr8_3:59994083-59994102	Msa1299010:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	59993461	59995301	59993461	ID=Msa1299010;Name=Msa1299010
chr8_3	mRNA	59993461	59995301	59993461	ID=Msa1299010-mRNA-1;Parent=Msa1299010;Name=Msa1299010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=211\|1\|1\|1\|1\|1\|3\|412\|348
chr8_3	exon	59993461	59994777	59993461	ID=Msa1299010-mRNA-1:exon:17460;Parent=Msa1299010-mRNA-1
chr8_3	exon	59994855	59994921	59994855	ID=Msa1299010-mRNA-1:exon:17459;Parent=Msa1299010-mRNA-1
chr8_3	exon	59995016	59995301	59995016	ID=Msa1299010-mRNA-1:exon:17458;Parent=Msa1299010-mRNA-1
chr8_3	five_prime_UTR	59995091	59995301	59995091	ID=Msa1299010-mRNA-1:five_prime_utr;Parent=Msa1299010-mRNA-1
chr8_3	CDS	59995016	59995090	59995016	ID=Msa1299010-mRNA-1:cds;Parent=Msa1299010-mRNA-1
chr8_3	CDS	59994855	59994921	59994855	ID=Msa1299010-mRNA-1:cds;Parent=Msa1299010-mRNA-1
chr8_3	CDS	59993873	59994777	59993873	ID=Msa1299010-mRNA-1:cds;Parent=Msa1299010-mRNA-1
chr8_3	three_prime_UTR	59993461	59993872	59993461	ID=Msa1299010-mRNA-1:three_prime_utr;Parent=Msa1299010-mRNA-1

Gene Sequence

>Msa1299010

ATGGTTTCCGATTCAATCGCCGCCGTTCCGATTCCTTCCGCCGCTAACACCAAGAACCCTGGCAAAAAGAAGAGGACCAATAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGTGAACAATGGCTATCTCAAGGTGCGGTGAAGAAGAAGGGTTGCAAGGATGGATTGGACGATGATGTCCATGTGCCGTCGTCGCCAGTGGGGAAACAGAGCAAACGTGAATTGGAGAAAGTGGGGGCGAGGCGTAGAGGTGGAGAGGATGATGTGTTGATCCATCAAGACAGTGATTCGGAGTCACCGTCAAACAGTCCTATCAGTCCTAATAGTAGTGTGTTGTGTGGCAATGATTCCGGGACGAATTTCACTGGTAGTAGCAGTGGTGGAAGCAGTAGCAGTAGTAGTTCTAGTAGTGGTGGGTGTTTCTCTGGGAATATTACAGAAGAGGAAGAAGATGATGAAGAAGAAGTAGAACATGAGGAGGAGGATGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAGAAGCATAGAGCCTCTTCACAGAATGAACCCGTTGCAGAAACGGATTCATCTTGTGAAGTGACTGATGGTTTGAATTTAGGATGTTTGGATTCCAAACCAGGGAGTGGTGGAACGGTTCCTCGGGCATCCAGTAATGGCAAAGCTTGGAGGGCTGATGATGCTTTCCGCCCTCAGACTTTACCCAACCTGTCGAAACAGCATAGTATGCCGAATCCACGTTTTGTAGGAGGGGTTCCCTGGTCTCGCATGTCTGTGCCATCCAATTGTCCAATTTGCTGTGAGGATCTTGATTTAACGGACACAAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAGGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCATGGAGGTAGCCTTACTCTTCGGTTGGCTCGTTCTGTTAGCATGATCGAAAGGTCTTGA

Protein sequence

>Msa1299010

MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVPSSPVGKQSKRELEKVGARRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCFSGNITEEEEDDEEEVEHEEEDDDGCLDDWEAVADALAADEKHRASSQNEPVAETDSSCEVTDGLNLGCLDSKPGSGGTVPRASSNGKAWRADDAFRPQTLPNLSKQHSMPNPRFVGGVPWSRMSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS*