AlfalfaGEDB | Msa0993240

M. sativa cultivar zhongmu-4 / Msa0993240

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805
PFAM: PF01145.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993240	XP_013452417.1	100.000	292	0	0	1	292	1	292	0.0	602

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993240	sp\|Q9FHM7\|HIR4_ARATH	81.849	292	52	1	1	291	1	292	0.0	504

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993240	I3SG23	100.000	292	0	0	1	292	1	292	0.0	602

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa0993240	0.816941	4.264769e-52	-8.615850e-47
Msa0006880	Msa0993240	0.805637	1.212291e-49	-8.615850e-47
Msa0010490	Msa0993240	0.801861	7.373777e-49	-8.615850e-47
Msa0010500	Msa0993240	0.805428	1.341516e-49	-8.615850e-47
Msa0010820	Msa0993240	0.811482	6.847093e-51	-8.615850e-47
Msa0015460	Msa0993240	0.805963	1.035676e-49	-8.615850e-47
Msa0020390	Msa0993240	0.800498	1.401122e-48	-8.615850e-47
Msa0026660	Msa0993240	0.801619	8.264972e-49	-8.615850e-47
Msa0029260	Msa0993240	0.812251	4.658177e-51	-8.615850e-47
Msa0037840	Msa0993240	0.802083	6.639065e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993240	MtrunA17_Chr6g0476481	100.000	292	0	0	1	292	1	292	0.0	602
Msa0993240	MtrunA17_Chr6g0452801	57.092	282	121	0	7	288	5	286	1.32e-114	332
Msa0993240	MtrunA17_Chr4g0060101	58.803	284	115	1	1	284	1	282	2.13e-114	331
Msa0993240	MtrunA17_Chr8g0362631	55.124	283	127	0	5	287	3	285	1.28e-113	329
Msa0993240	MtrunA17_Chr4g0060111	56.446	287	123	1	1	287	1	285	1.36e-112	327
Msa0993240	MtrunA17_Chr4g0060151	56.446	287	123	1	1	287	1	285	1.36e-112	327
Msa0993240	MtrunA17_Chr4g0060091	56.690	284	121	1	1	284	6	287	1.40e-110	322
Msa0993240	MtrunA17_Chr4g0060171	53.584	293	125	2	1	284	1	291	9.91e-109	317
Msa0993240	MtrunA17_Chr6g0476411	96.491	57	2	0	236	292	1	57	6.62e-35	120
Msa0993240	MtrunA17_Chr6g0476421	93.220	59	3	1	150	207	1	59	1.80e-28	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993240	AT5G51570.1	81.849	292	52	1	1	291	1	292	0.0	504
Msa0993240	AT3G01290.1	57.692	286	119	1	1	286	1	284	1.31e-121	350
Msa0993240	AT5G62740.1	55.903	288	125	1	1	288	1	286	5.40e-116	335
Msa0993240	AT1G69840.1	56.429	280	122	0	7	286	5	284	7.71e-108	315
Msa0993240	AT1G69840.2	56.429	280	122	0	7	286	5	284	7.71e-108	315
Msa0993240	AT1G69840.5	56.429	280	122	0	7	286	5	284	7.71e-108	315
Msa0993240	AT1G69840.7	56.429	280	122	0	7	286	5	284	7.71e-108	315
Msa0993240	AT1G69840.4	56.429	280	122	0	7	286	5	284	7.71e-108	315
Msa0993240	AT1G69840.6	56.429	280	122	0	7	286	5	284	7.71e-108	315
Msa0993240	AT1G69840.3	56.429	280	122	0	7	286	5	284	7.71e-108	315

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Find 71 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCACAGGAACAGATCC+AGG	0.524804	6_4:+65721885	Msa0993240:CDS
AAAGAAGAATACCTTAGTTT+TGG	0.287824	6_4:-65720413	None:intergenic
AAAGACTTGGAAAACATAGA+TGG	0.401567	6_4:-65719998	None:intergenic
AAAGGTGTCATGGAAGAACT+TGG	0.494843	6_4:+65722194	Msa0993240:CDS
AACACGTTCTGTTTATTCTG+TGG	0.531087	6_4:+65720235	Msa0993240:CDS
AACTTCAGCGAAGGAAGTGA+TGG	0.541593	6_4:+65724671	Msa0993240:CDS
AAGCCTGGATCTGTTCCTGT+GGG	0.556410	6_4:-65721888	None:intergenic
AAGTTCTTCCATGACACCTT+TGG	0.440981	6_4:-65722192	None:intergenic
AATATCATTTATCAGGTGAT+GGG	0.558275	6_4:+65723300	Msa0993240:intron
AATCATCAATACATTCATTT+TGG	0.202310	6_4:-65719969	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACTTGGAAAACATAGA+TGG	-	chr6_4:65720001-65720020	None:intergenic	30.0%
ATGGAAAAAGCTGTAACAAA+TGG	+	chr6_4:65721257-65721276	Msa0993240:intron	30.0%
AAACAACAACGATATCGATA+AGG	-	chr6_4:65722102-65722121	None:intergenic	30.0%
TATTGTTCCGAAGATGAATT+TGG	+	chr6_4:65722139-65722158	Msa0993240:CDS	30.0%
CACATGAATTTCATAAATGG+TGG	+	chr6_4:65722327-65722346	Msa0993240:intron	30.0%
ACTTTCTTTCTACTTTCAAG+AGG	-	chr6_4:65722410-65722429	None:intergenic	30.0%
GATATCATACAAGTTACATC+AGG	+	chr6_4:65722785-65722804	Msa0993240:intron	30.0%
GATTTCTTAAGCACAATCTA+AGG	-	chr6_4:65723033-65723052	None:intergenic	30.0%
ATACTCATTCACTTTCTTCA+AGG	+	chr6_4:65723126-65723145	Msa0993240:intron	30.0%
GATAAATGATATTCAGAAGG+AGG	-	chr6_4:65723293-65723312	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	65719971	65725255	65719971	ID=Msa0993240;Name=Msa0993240
chr6_4	mRNA	65719971	65725255	65719971	ID=Msa0993240-mRNA-1;Parent=Msa0993240;Name=Msa0993240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=258\|1\|1\|1\|1\|1\|5\|392\|292
chr6_4	exon	65719971	65720423	65719971	ID=Msa0993240-mRNA-1:exon:12247;Parent=Msa0993240-mRNA-1
chr6_4	exon	65721802	65721922	65721802	ID=Msa0993240-mRNA-1:exon:12248;Parent=Msa0993240-mRNA-1
chr6_4	exon	65722129	65722220	65722129	ID=Msa0993240-mRNA-1:exon:12249;Parent=Msa0993240-mRNA-1
chr6_4	exon	65723315	65723411	65723315	ID=Msa0993240-mRNA-1:exon:12250;Parent=Msa0993240-mRNA-1
chr6_4	exon	65724490	65725255	65724490	ID=Msa0993240-mRNA-1:exon:12251;Parent=Msa0993240-mRNA-1
chr6_4	five_prime_UTR	65719971	65720228	65719971	ID=Msa0993240-mRNA-1:five_prime_utr;Parent=Msa0993240-mRNA-1
chr6_4	CDS	65720229	65720423	65720229	ID=Msa0993240-mRNA-1:cds;Parent=Msa0993240-mRNA-1
chr6_4	CDS	65721802	65721922	65721802	ID=Msa0993240-mRNA-1:cds;Parent=Msa0993240-mRNA-1
chr6_4	CDS	65722129	65722220	65722129	ID=Msa0993240-mRNA-1:cds;Parent=Msa0993240-mRNA-1
chr6_4	CDS	65723315	65723411	65723315	ID=Msa0993240-mRNA-1:cds;Parent=Msa0993240-mRNA-1
chr6_4	CDS	65724490	65724863	65724490	ID=Msa0993240-mRNA-1:cds;Parent=Msa0993240-mRNA-1
chr6_4	three_prime_UTR	65724864	65725255	65724864	ID=Msa0993240-mRNA-1:three_prime_utr;Parent=Msa0993240-mRNA-1

Gene Sequence

>Msa0993240

ATGGGTAACACGTTCTGTTTATTCTGTGGTTGTGTTGAACAATCAAGCGTAGGAATTGTTGAACAGTGGGGTCGTTTTCAAAGAGTTGCTCAACCTGGTTTCCAAATCTTTAACCCTTTTGCTGGTGAATGTCTTGCTGGTATTCTTTCTACAAGAATTGCTTCTCTTGATGTTAAAATTGAAACCAAAACTAAGGACAACGTGTTTGTGCAGTTGTTATGTTCAATTCAATACCGTGTAGTGAAGGAAAACGCTGATGATGCTTTTTATGAGTTGCAAAACCCACAGGAACAGATCCAGGCTTATGTTTTTGATGTGGCTCGTGCTATTGTTCCGAAGATGAATTTGGATGAGCTGTTTGAGCAAAAAGGTGAGGTTGCCAAAGGTGTCATGGAAGAACTTGGAAAGGTGATGGGAGAATATGGATATAGCATAGAACACATACTGATGGTTGATATTATACCTGATCCTTCTGTGCGGAGAGCAATGAATGAGATCAATGCAGCTCAAAGGCTGTTACTTGCTAGTGAATTCAAAGGAGAAGCAGACAAGGTGCTTATTGTTAAAAAGGCAGAAGCAGAAGCCGAATCAAAGTTTTTAGGCGGGGTTGGTGTAGCAAGGCAGAGGCAAGCTATCACAGATGGCTTGAGAGAGAACATCTTGCAATTCTCTAACAAGGTAGAAGGAACTTCAGCGAAGGAAGTGATGGATCTTATCATGATTACTCAATACTTTGACACAATCAGAGACCTTGGAAACAATTCAAAGAATACCACAGTTTTTATACCTCATGGACCTGGCCATGTTAGGGATATCGGTGATCAAATTCGCAACGGTATGATGGAAGCATCATGTGCTCAAGTTACTGATGTCGAGTGA

Protein sequence

>Msa0993240

MGNTFCLFCGCVEQSSVGIVEQWGRFQRVAQPGFQIFNPFAGECLAGILSTRIASLDVKIETKTKDNVFVQLLCSIQYRVVKENADDAFYELQNPQEQIQAYVFDVARAIVPKMNLDELFEQKGEVAKGVMEELGKVMGEYGYSIEHILMVDIIPDPSVRRAMNEINAAQRLLLASEFKGEADKVLIVKKAEAEAESKFLGGVGVARQRQAITDGLRENILQFSNKVEGTSAKEVMDLIMITQYFDTIRDLGNNSKNTTVFIPHGPGHVRDIGDQIRNGMMEASCAQVTDVE*