AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211000 MtrunA17_Chr4g0059601 96.264 348 13 0 1 348 1 348 0.0 572
Msa1211000 MtrunA17_Chr6g0451991 43.910 312 122 12 22 319 14 286 3.40e-57 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211000 AT5G62910.1 44.134 358 153 10 1 345 1 324 2.64e-68 218
Msa1211000 AT5G62910.2 44.134 358 153 10 1 345 1 324 2.64e-68 218
Msa1211000 AT3G48070.1 46.328 354 149 11 1 348 1 319 6.09e-65 208
Msa1211000 AT3G48070.2 45.739 352 152 10 1 347 1 318 8.14e-64 206
Msa1211000 AT3G48070.3 47.656 256 101 8 96 347 43 269 1.84e-43 152
Msa1211000 AT1G74870.1 30.492 305 138 7 22 319 21 258 8.57e-27 107
Msa1211000 AT2G28540.2 42.105 57 27 1 273 323 9 65 9.95e-11 63.5

Find 137 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATCGTCTTCACAAATT+AGG 0.123066 8_1:-70377163 Msa1211000:five_prime_UTR
GTGACTGATGGTTTGAATTT+AGG 0.215191 8_1:-70376314 Msa1211000:CDS
TTGTTTCTCATTTCATCTTA+TGG 0.216723 8_1:-70375726 Msa1211000:three_prime_UTR
ATTCAATACATTGAAATAAA+TGG 0.224114 8_1:-70375645 Msa1211000:three_prime_UTR
AGTAGTGGTGGGTGTTTCTC+TGG 0.244371 8_1:-70376509 Msa1211000:CDS
TCTATCGTCTTCACAAATTA+GGG 0.279268 8_1:-70377162 Msa1211000:five_prime_UTR
CCTCCAAGCTTTGCCATTAC+CGG 0.294402 8_1:+70376244 None:intergenic
ACCCTCATTCTGAGGCAAAA+AGG 0.317365 8_1:-70377256 Msa1211000:five_prime_UTR
CTTCAATTTCGCGGACCTAT+TGG 0.323866 8_1:+70376924 None:intergenic
GAGCAGGATGCTCGTTGTCC+TGG 0.324362 8_1:-70376008 Msa1211000:CDS
TCAAGATCCTCACAGCAAAT+TGG 0.334616 8_1:+70376104 None:intergenic
AGTTAGAGAGATAACGAAAA+TGG 0.337044 8_1:+70377205 None:intergenic
GTGTTGTGTGGCAATGATTC+CGG 0.338325 8_1:-70376584 Msa1211000:CDS
CCACACAACACACTACTATT+AGG 0.338725 8_1:+70376596 None:intergenic
TTCATAGGTCTAGTTGGTTT+AGG 0.341217 8_1:-70375780 Msa1211000:three_prime_UTR
AATGTGAAGTGGAAGCTTTA+AGG 0.357114 8_1:+70375599 None:intergenic
CGTTCCACCACTCCCTGGTT+TGG 0.368101 8_1:+70376280 None:intergenic
CTGTGAGGATCTTGATTTAA+CGG 0.370410 8_1:-70376096 Msa1211000:CDS
TGGTTTGAATTTAGGATGTT+TGG 0.374976 8_1:-70376306 Msa1211000:CDS
GATGAATCCGTTTCTGCAAC+GGG 0.375384 8_1:+70376344 None:intergenic
ATGTGAAGTGGAAGCTTTAA+GGG 0.379852 8_1:+70375600 None:intergenic
ACTCCGAATCACTGTCTTGA+TGG 0.383993 8_1:+70376642 None:intergenic
AAGAAGAAGGGTTGCAAGGA+TGG 0.391810 8_1:-70376773 Msa1211000:CDS
CTCACAGCAAATTGGACAAT+TGG 0.402448 8_1:+70376112 None:intergenic
CCACAAGAGGATTCTTGAGC+AGG 0.406130 8_1:-70376024 Msa1211000:CDS
ATGATGGATGCTTGGATGAT+TGG 0.408221 8_1:-70376427 Msa1211000:CDS
CGTTTGCTCTGTTTCCCCAC+TGG 0.408315 8_1:+70376719 None:intergenic
GAAACAGAGCAAACGTGAAT+TGG 0.411752 8_1:-70376711 Msa1211000:CDS
TGATGGATGCTTGGATGATT+GGG 0.423751 8_1:-70376426 Msa1211000:CDS
ACACTACTATTAGGACTGAT+AGG 0.429535 8_1:+70376605 None:intergenic
GCATACTATGCTGTTTCGAC+AGG 0.434123 8_1:+70376186 None:intergenic
AGAAGTAGAACATGAGGAGG+AGG 0.445552 8_1:-70376453 Msa1211000:CDS
GAATGAACCCGTTGCAGAAA+CGG 0.447105 8_1:-70376351 Msa1211000:CDS
GAGTGGTGGAACGGTTCCTC+GGG 0.449106 8_1:-70376270 Msa1211000:CDS
TGTTGTGTGGCAATGATTCC+GGG 0.450115 8_1:-70376583 Msa1211000:CDS
GTGTTAGCGGCGGAAGGAAT+CGG 0.452634 8_1:+70377067 None:intergenic
CCTCCTACAAAACGTGGATT+CGG 0.456274 8_1:+70376164 None:intergenic
GGAGTGGTGGAACGGTTCCT+CGG 0.457706 8_1:-70376271 Msa1211000:CDS
AGCAGGATGCTCGTTGTCCT+GGG 0.459006 8_1:-70376007 Msa1211000:CDS
GGAACGGTTCCTCGGGCATC+CGG 0.459152 8_1:-70376263 Msa1211000:CDS
TTGCCTCAGAATGAGGGTCC+AGG 0.459610 8_1:+70377261 None:intergenic
ACGCTGCAAAATGATGGAAT+TGG 0.460023 8_1:+70375556 None:intergenic
GTTCCTCGGGCATCCGGTAA+TGG 0.460257 8_1:-70376257 Msa1211000:CDS
GCCAGGGTTCTTGGTGTTAG+CGG 0.468562 8_1:+70377054 None:intergenic
GAAGGGTTGCAAGGATGGAT+TGG 0.469248 8_1:-70376768 Msa1211000:CDS
AGTAGTAGTTCTAGTAGTGG+TGG 0.477973 8_1:-70376521 Msa1211000:CDS
CATGTGCCGTCGTCGCCAGT+GGG 0.478008 8_1:-70376734 Msa1211000:CDS
CTATGCTGTTTCGACAGGTT+GGG 0.479061 8_1:+70376191 None:intergenic
TTCAGGTGCGGTGAAGAAGA+AGG 0.484533 8_1:-70376786 Msa1211000:intron
ATGCTCGTTGTCCTGGGTGC+AGG 0.487799 8_1:-70376001 Msa1211000:CDS
GGATGTTTGGATTCCAAACC+AGG 0.490028 8_1:-70376293 Msa1211000:CDS
ACAACGACGCTGCAAAATGA+TGG 0.491457 8_1:+70375550 None:intergenic
CTTATACTGCTTCAATTTCG+CGG 0.494651 8_1:+70376915 None:intergenic
CCGGTAATGGCAAAGCTTGG+AGG 0.496535 8_1:-70376244 Msa1211000:CDS
CAAACGTGAATTGGAGAAAG+TGG 0.497957 8_1:-70376702 Msa1211000:CDS
TGGCACAGACATGCGAGACC+AGG 0.500008 8_1:+70376136 None:intergenic
ATGGAGGTAGCCTTACTCTT+CGG 0.500698 8_1:-70375935 Msa1211000:CDS
GGAGGATGATGATGGATGCT+TGG 0.501682 8_1:-70376435 Msa1211000:CDS
GTAGTGGTGGGTGTTTCTCT+GGG 0.502450 8_1:-70376508 Msa1211000:CDS
CCACTGGCGACGACGGCACA+TGG 0.507430 8_1:+70376735 None:intergenic
GGAAACCATGGCTGAACCGT+TGG 0.508059 8_1:+70377108 None:intergenic
CGGAACGGCGGCGATTGAAT+CGG 0.509579 8_1:+70377087 None:intergenic
GAAACCATGGCTGAACCGTT+GGG 0.510820 8_1:+70377109 None:intergenic
ACTATGCTGTTTCGACAGGT+TGG 0.517407 8_1:+70376190 None:intergenic
CATGAGGAGGAGGATGATGA+TGG 0.519831 8_1:-70376443 Msa1211000:CDS
CTTGGATGATTGGGAGGCTG+TGG 0.524760 8_1:-70376417 Msa1211000:CDS
TGAAGAAGAAGTAGAACATG+AGG 0.527036 8_1:-70376459 Msa1211000:CDS
AGATGAATCCGTTTCTGCAA+CGG 0.528437 8_1:+70376343 None:intergenic
CTCTGGGAATATTACAGAAG+AGG 0.529198 8_1:-70376492 Msa1211000:CDS
TGTTGGTATGTGAATACATA+AGG 0.531389 8_1:-70375678 Msa1211000:three_prime_UTR
ACTATAGACAAAATGTGAAG+TGG 0.540347 8_1:+70375588 None:intergenic
AACGAGCCAACCGAAGAGTA+AGG 0.540467 8_1:+70375925 None:intergenic
GACAGGTTGGGTAAAGTCTG+AGG 0.544161 8_1:+70376203 None:intergenic
GATCCATCAAGACAGTGATT+CGG 0.544172 8_1:-70376645 Msa1211000:CDS
TTCTTGGTGTTAGCGGCGGA+AGG 0.545412 8_1:+70377061 None:intergenic
CATCCGGTAATGGCAAAGCT+TGG 0.549211 8_1:-70376247 Msa1211000:CDS
CGGTAATGGCAAAGCTTGGA+GGG 0.552798 8_1:-70376243 Msa1211000:CDS
TTGATGCGCGTCGTGAACAA+TGG 0.554675 8_1:-70376891 Msa1211000:CDS
TTGGATTCCAAACCAGGGAG+TGG 0.557492 8_1:-70376287 Msa1211000:CDS
TCAGGTGCGGTGAAGAAGAA+GGG 0.558988 8_1:-70376785 Msa1211000:intron
GGAACCGTTCCACCACTCCC+TGG 0.559516 8_1:+70376275 None:intergenic
TTAAGGGAATATGCCATGGC+AGG 0.559683 8_1:+70375616 None:intergenic
GGCGAGGCGTAGAGGTGGAG+AGG 0.561849 8_1:-70376678 Msa1211000:CDS
AGAAGAAGTAGAACATGAGG+AGG 0.564899 8_1:-70376456 Msa1211000:CDS
ACTACCAGTGAAATTCGTCC+CGG 0.566478 8_1:+70376565 None:intergenic
TCATCTTGTGAAGTGACTGA+TGG 0.567881 8_1:-70376326 Msa1211000:CDS
GATTCCGGGACGAATTTCAC+TGG 0.570168 8_1:-70376569 Msa1211000:CDS
GGCTCTATGCTTCTCATCGG+CGG 0.570378 8_1:+70376382 None:intergenic
GATTCCAAACCAGGGAGTGG+TGG 0.572211 8_1:-70376284 Msa1211000:CDS
ACACTTGCTTCTGTCTCGAT+AGG 0.572811 8_1:+70375960 None:intergenic
TTCACTGGTAGTAGCAGTGG+TGG 0.572834 8_1:-70376554 Msa1211000:CDS
GTAGTAGTTCTAGTAGTGGT+GGG 0.574175 8_1:-70376520 Msa1211000:CDS
AGGTAGCCTTACTCTTCGGT+TGG 0.577834 8_1:-70375931 Msa1211000:CDS
AAATCCCAACGGTTCAGCCA+TGG 0.579557 8_1:-70377113 Msa1211000:exon
AAACGTGAATTGGAGAAAGT+GGG 0.580491 8_1:-70376701 Msa1211000:CDS
GCCGCTAACACCAAGAACCC+TGG 0.580532 8_1:-70377055 Msa1211000:CDS
AGGGTTCTTGGTGTTAGCGG+CGG 0.581566 8_1:+70377057 None:intergenic
CAGCAAATTGGACAATTGGA+TGG 0.582722 8_1:+70376116 None:intergenic
GAGACAGAAGCAAGTGTGCA+TGG 0.583579 8_1:-70375954 Msa1211000:CDS
GGACTGATAGGACTGTTTGA+CGG 0.584911 8_1:+70376617 None:intergenic
AACGGGTTCATTCTGTGAAG+AGG 0.588593 8_1:+70376361 None:intergenic
TTCATTAGTTGTGTATGCTG+TGG 0.589086 8_1:-70375862 Msa1211000:three_prime_UTR
CCACCTGGACCCTCATTCTG+AGG 0.603248 8_1:-70377264 Msa1211000:five_prime_UTR
AGCAGTAGTAGTTCTAGTAG+TGG 0.604603 8_1:-70376524 Msa1211000:CDS
TAAATGGTTACATCCTGCCA+TGG 0.605167 8_1:-70375629 Msa1211000:three_prime_UTR
AGCTTTAAGGGAATATGCCA+TGG 0.606167 8_1:+70375612 None:intergenic
CGTGAACAATGGCTATCTCA+AGG 0.607296 8_1:-70376880 Msa1211000:intron
GGCGATTGAATCGGAAACCA+TGG 0.614198 8_1:+70377096 None:intergenic
CCTGCTCAAGAATCCTCTTG+TGG 0.614452 8_1:+70376024 None:intergenic
TGTTTCCCCACTGGCGACGA+CGG 0.617264 8_1:+70376728 None:intergenic
AGAGGCTCTATGCTTCTCAT+CGG 0.622264 8_1:+70376379 None:intergenic
GGCACAGACATGCGAGACCA+GGG 0.623059 8_1:+70376137 None:intergenic
AGCCGAAAACCACAATTGCA+CGG 0.626352 8_1:+70376059 None:intergenic
ACAGGTTGGGTAAAGTCTGA+GGG 0.629189 8_1:+70376204 None:intergenic
CCTCAGAATGAGGGTCCAGG+TGG 0.633172 8_1:+70377264 None:intergenic
AACGTGAATTGGAGAAAGTG+GGG 0.634840 8_1:-70376700 Msa1211000:CDS
CAAACCAGGGAGTGGTGGAA+CGG 0.635703 8_1:-70376279 Msa1211000:CDS
TCATATTGCTTCCTGCACCC+AGG 0.637371 8_1:+70375990 None:intergenic
AATTTCACTGGTAGTAGCAG+TGG 0.639931 8_1:-70376557 Msa1211000:CDS
GAAATCCGATAAAATCCACC+TGG 0.644433 8_1:-70377279 Msa1211000:five_prime_UTR
GAGATAACGAAAATGGATCA+CGG 0.646784 8_1:+70377212 None:intergenic
CAATTGTCCAATTTGCTGTG+AGG 0.649475 8_1:-70376111 Msa1211000:CDS
GGTGAAGAAGAAGGGTTGCA+AGG 0.653357 8_1:-70376777 Msa1211000:CDS
ATGTGCCGTCGTCGCCAGTG+GGG 0.653421 8_1:-70376733 Msa1211000:CDS
GGCGGAAGGAATCGGAACGG+CGG 0.658597 8_1:+70377075 None:intergenic
GTTCTGTTAGCATGATCGAA+AGG 0.664821 8_1:-70375905 Msa1211000:CDS
GGAACCCCTCCTACAAAACG+TGG 0.666447 8_1:+70376158 None:intergenic
TGGATGCTTGGATGATTGGG+AGG 0.674598 8_1:-70376423 Msa1211000:CDS
GATGTTTGGATTCCAAACCA+GGG 0.680935 8_1:-70376292 Msa1211000:CDS
AGCGGCGGAAGGAATCGGAA+CGG 0.682697 8_1:+70377072 None:intergenic
TGGTATGTGAATACATAAGG+TGG 0.685753 8_1:-70375675 Msa1211000:three_prime_UTR
ACGTGAATTGGAGAAAGTGG+GGG 0.693905 8_1:-70376699 Msa1211000:CDS
TCGAAAATATCAAATCCCAA+CGG 0.697719 8_1:-70377124 Msa1211000:five_prime_UTR
TTAATGTAGAATACTCATGT+TGG 0.699610 8_1:-70375695 Msa1211000:three_prime_UTR
GGTTGGGTAAAGTCTGAGGG+CGG 0.713101 8_1:+70376207 None:intergenic
ACAGAAGCAAGTGTGCATGG+AGG 0.724066 8_1:-70375951 Msa1211000:CDS
CCTAATAGTAGTGTGTTGTG+TGG 0.739406 8_1:-70376596 Msa1211000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATTATATAATCGAAAT+TGG + chr8_1:70375791-70375810 None:intergenic 15.0%
!!! TAATTTTGTTATCTTTGTTA+TGG - chr8_1:70375981-70376000 Msa1211000:CDS 15.0%
!! ATTCAATACATTGAAATAAA+TGG - chr8_1:70377147-70377166 Msa1211000:five_prime_UTR 15.0%
!! GAAAATTATATAATCGAAAT+TGG + chr8_1:70375791-70375810 None:intergenic 15.0%
!!! TAATTTTGTTATCTTTGTTA+TGG - chr8_1:70375981-70376000 Msa1211000:CDS 15.0%
!! ATTCAATACATTGAAATAAA+TGG - chr8_1:70377147-70377166 Msa1211000:five_prime_UTR 15.0%
!! TTTTATCGGATTTCAGTTTA+CGG + chr8_1:70375507-70375526 None:intergenic 25.0%
!!! CGATTTTTGTTTTGATCTAA+TGG - chr8_1:70375953-70375972 Msa1211000:CDS 25.0%
!!! TTATCTTTGTTATGGTTTTC+AGG - chr8_1:70375989-70376008 Msa1211000:CDS 25.0%
!! TTGGAACATCTAATTTTCAT+AGG - chr8_1:70376997-70377016 Msa1211000:intron 25.0%
!! TTGTTTCTCATTTCATCTTA+TGG - chr8_1:70377066-70377085 Msa1211000:CDS 25.0%
! TTAATGTAGAATACTCATGT+TGG - chr8_1:70377097-70377116 Msa1211000:CDS 25.0%
!! TTTTATCGGATTTCAGTTTA+CGG + chr8_1:70375507-70375526 None:intergenic 25.0%
!!! CGATTTTTGTTTTGATCTAA+TGG - chr8_1:70375953-70375972 Msa1211000:CDS 25.0%
!!! TTATCTTTGTTATGGTTTTC+AGG - chr8_1:70375989-70376008 Msa1211000:CDS 25.0%
!! TTGGAACATCTAATTTTCAT+AGG - chr8_1:70376997-70377016 Msa1211000:intron 25.0%
!! TTGTTTCTCATTTCATCTTA+TGG - chr8_1:70377066-70377085 Msa1211000:CDS 25.0%
! TTAATGTAGAATACTCATGT+TGG - chr8_1:70377097-70377116 Msa1211000:CDS 25.0%
AGTTAGAGAGATAACGAAAA+TGG + chr8_1:70375590-70375609 None:intergenic 30.0%
TTCTATCGTCTTCACAAATT+AGG - chr8_1:70375629-70375648 Msa1211000:three_prime_UTR 30.0%
TCTATCGTCTTCACAAATTA+GGG - chr8_1:70375630-70375649 Msa1211000:three_prime_UTR 30.0%
TCGAAAATATCAAATCCCAA+CGG - chr8_1:70375668-70375687 Msa1211000:three_prime_UTR 30.0%
! AATTCGATTTTCAGACCAAT+AGG - chr8_1:70375853-70375872 Msa1211000:three_prime_UTR 30.0%
! TGGTTTGAATTTAGGATGTT+TGG - chr8_1:70376486-70376505 Msa1211000:CDS 30.0%
! CTAATTTTCATAGGTCTAGT+TGG - chr8_1:70377006-70377025 Msa1211000:intron 30.0%
TGTTGGTATGTGAATACATA+AGG - chr8_1:70377114-70377133 Msa1211000:exon 30.0%
ACTATAGACAAAATGTGAAG+TGG + chr8_1:70377207-70377226 None:intergenic 30.0%
AGTTAGAGAGATAACGAAAA+TGG + chr8_1:70375590-70375609 None:intergenic 30.0%
TTCTATCGTCTTCACAAATT+AGG - chr8_1:70375629-70375648 Msa1211000:three_prime_UTR 30.0%
TCTATCGTCTTCACAAATTA+GGG - chr8_1:70375630-70375649 Msa1211000:three_prime_UTR 30.0%
TCGAAAATATCAAATCCCAA+CGG - chr8_1:70375668-70375687 Msa1211000:three_prime_UTR 30.0%
! AATTCGATTTTCAGACCAAT+AGG - chr8_1:70375853-70375872 Msa1211000:three_prime_UTR 30.0%
! TGGTTTGAATTTAGGATGTT+TGG - chr8_1:70376486-70376505 Msa1211000:CDS 30.0%
! CTAATTTTCATAGGTCTAGT+TGG - chr8_1:70377006-70377025 Msa1211000:intron 30.0%
TGTTGGTATGTGAATACATA+AGG - chr8_1:70377114-70377133 Msa1211000:exon 30.0%
ACTATAGACAAAATGTGAAG+TGG + chr8_1:70377207-70377226 None:intergenic 30.0%
GAGATAACGAAAATGGATCA+CGG + chr8_1:70375583-70375602 None:intergenic 35.0%
CTTATACTGCTTCAATTTCG+CGG + chr8_1:70375880-70375899 None:intergenic 35.0%
!!! TTTGTTATGGTTTTCAGGTG+CGG - chr8_1:70375994-70376013 Msa1211000:CDS 35.0%
AAACGTGAATTGGAGAAAGT+GGG - chr8_1:70376091-70376110 Msa1211000:CDS 35.0%
ACACTACTATTAGGACTGAT+AGG + chr8_1:70376190-70376209 None:intergenic 35.0%
TGAAGAAGAAGTAGAACATG+AGG - chr8_1:70376333-70376352 Msa1211000:CDS 35.0%
GTGACTGATGGTTTGAATTT+AGG - chr8_1:70376478-70376497 Msa1211000:CDS 35.0%
CTGTGAGGATCTTGATTTAA+CGG - chr8_1:70376696-70376715 Msa1211000:CDS 35.0%
TTCATTAGTTGTGTATGCTG+TGG - chr8_1:70376930-70376949 Msa1211000:intron 35.0%
CGACGCATATAATGCAAAAA+AGG + chr8_1:70376961-70376980 None:intergenic 35.0%
! TCGTCTGTAATTTTCTAGGT+TGG - chr8_1:70376978-70376997 Msa1211000:intron 35.0%
! TTCATAGGTCTAGTTGGTTT+AGG - chr8_1:70377012-70377031 Msa1211000:intron 35.0%
TGGTATGTGAATACATAAGG+TGG - chr8_1:70377117-70377136 Msa1211000:five_prime_UTR 35.0%
! ATGTGAAGTGGAAGCTTTAA+GGG + chr8_1:70377195-70377214 None:intergenic 35.0%
AATGTGAAGTGGAAGCTTTA+AGG + chr8_1:70377196-70377215 None:intergenic 35.0%
GAGATAACGAAAATGGATCA+CGG + chr8_1:70375583-70375602 None:intergenic 35.0%
CTTATACTGCTTCAATTTCG+CGG + chr8_1:70375880-70375899 None:intergenic 35.0%
!!! TTTGTTATGGTTTTCAGGTG+CGG - chr8_1:70375994-70376013 Msa1211000:CDS 35.0%
AAACGTGAATTGGAGAAAGT+GGG - chr8_1:70376091-70376110 Msa1211000:CDS 35.0%
ACACTACTATTAGGACTGAT+AGG + chr8_1:70376190-70376209 None:intergenic 35.0%
TGAAGAAGAAGTAGAACATG+AGG - chr8_1:70376333-70376352 Msa1211000:CDS 35.0%
GTGACTGATGGTTTGAATTT+AGG - chr8_1:70376478-70376497 Msa1211000:CDS 35.0%
CTGTGAGGATCTTGATTTAA+CGG - chr8_1:70376696-70376715 Msa1211000:CDS 35.0%
TTCATTAGTTGTGTATGCTG+TGG - chr8_1:70376930-70376949 Msa1211000:intron 35.0%
CGACGCATATAATGCAAAAA+AGG + chr8_1:70376961-70376980 None:intergenic 35.0%
! TCGTCTGTAATTTTCTAGGT+TGG - chr8_1:70376978-70376997 Msa1211000:intron 35.0%
! TTCATAGGTCTAGTTGGTTT+AGG - chr8_1:70377012-70377031 Msa1211000:intron 35.0%
TGGTATGTGAATACATAAGG+TGG - chr8_1:70377117-70377136 Msa1211000:five_prime_UTR 35.0%
! ATGTGAAGTGGAAGCTTTAA+GGG + chr8_1:70377195-70377214 None:intergenic 35.0%
AATGTGAAGTGGAAGCTTTA+AGG + chr8_1:70377196-70377215 None:intergenic 35.0%
GAAATCCGATAAAATCCACC+TGG - chr8_1:70375513-70375532 Msa1211000:three_prime_UTR 40.0%
! TTACCCTCTTCTTTTTGCCA+GGG + chr8_1:70375757-70375776 None:intergenic 40.0%
GAAACAGAGCAAACGTGAAT+TGG - chr8_1:70376081-70376100 Msa1211000:CDS 40.0%
CAAACGTGAATTGGAGAAAG+TGG - chr8_1:70376090-70376109 Msa1211000:CDS 40.0%
AACGTGAATTGGAGAAAGTG+GGG - chr8_1:70376092-70376111 Msa1211000:CDS 40.0%
GATCCATCAAGACAGTGATT+CGG - chr8_1:70376147-70376166 Msa1211000:CDS 40.0%
CCACACAACACACTACTATT+AGG + chr8_1:70376199-70376218 None:intergenic 40.0%
CCTAATAGTAGTGTGTTGTG+TGG - chr8_1:70376196-70376215 Msa1211000:CDS 40.0%
AATTTCACTGGTAGTAGCAG+TGG - chr8_1:70376235-70376254 Msa1211000:CDS 40.0%
!! AGCAGTAGTAGTTCTAGTAG+TGG - chr8_1:70376268-70376287 Msa1211000:CDS 40.0%
!! AGTAGTAGTTCTAGTAGTGG+TGG - chr8_1:70376271-70376290 Msa1211000:CDS 40.0%
!! GTAGTAGTTCTAGTAGTGGT+GGG - chr8_1:70376272-70376291 Msa1211000:CDS 40.0%
! CTCTGGGAATATTACAGAAG+AGG - chr8_1:70376300-70376319 Msa1211000:CDS 40.0%
AGAAGAAGTAGAACATGAGG+AGG - chr8_1:70376336-70376355 Msa1211000:CDS 40.0%
!! ATGATGGATGCTTGGATGAT+TGG - chr8_1:70376365-70376384 Msa1211000:CDS 40.0%
! TGATGGATGCTTGGATGATT+GGG - chr8_1:70376366-70376385 Msa1211000:CDS 40.0%
AGATGAATCCGTTTCTGCAA+CGG + chr8_1:70376452-70376471 None:intergenic 40.0%
TCATCTTGTGAAGTGACTGA+TGG - chr8_1:70376466-70376485 Msa1211000:CDS 40.0%
GATGTTTGGATTCCAAACCA+GGG - chr8_1:70376500-70376519 Msa1211000:CDS 40.0%
CAGCAAATTGGACAATTGGA+TGG + chr8_1:70376679-70376698 None:intergenic 40.0%
CTCACAGCAAATTGGACAAT+TGG + chr8_1:70376683-70376702 None:intergenic 40.0%
!! CAATTGTCCAATTTGCTGTG+AGG - chr8_1:70376681-70376700 Msa1211000:CDS 40.0%
TCAAGATCCTCACAGCAAAT+TGG + chr8_1:70376691-70376710 None:intergenic 40.0%
! AGTTTTCTTCCGTGCAATTG+TGG - chr8_1:70376724-70376743 Msa1211000:CDS 40.0%
! TTCCGTGCAATTGTGGTTTT+CGG - chr8_1:70376731-70376750 Msa1211000:CDS 40.0%
! TTTGTCTCTTTTGCCACAAG+AGG - chr8_1:70376755-70376774 Msa1211000:CDS 40.0%
GTTCTGTTAGCATGATCGAA+AGG - chr8_1:70376887-70376906 Msa1211000:CDS 40.0%
! TGCGTCGTCTGTAATTTTCT+AGG - chr8_1:70376974-70376993 Msa1211000:intron 40.0%
TAAATGGTTACATCCTGCCA+TGG - chr8_1:70377163-70377182 Msa1211000:five_prime_UTR 40.0%
!! AGCTTTAAGGGAATATGCCA+TGG + chr8_1:70377183-70377202 None:intergenic 40.0%
! ACGCTGCAAAATGATGGAAT+TGG + chr8_1:70377239-70377258 None:intergenic 40.0%
GAAATCCGATAAAATCCACC+TGG - chr8_1:70375513-70375532 Msa1211000:three_prime_UTR 40.0%
! TTACCCTCTTCTTTTTGCCA+GGG + chr8_1:70375757-70375776 None:intergenic 40.0%
GAAACAGAGCAAACGTGAAT+TGG - chr8_1:70376081-70376100 Msa1211000:CDS 40.0%
CAAACGTGAATTGGAGAAAG+TGG - chr8_1:70376090-70376109 Msa1211000:CDS 40.0%
AACGTGAATTGGAGAAAGTG+GGG - chr8_1:70376092-70376111 Msa1211000:CDS 40.0%
GATCCATCAAGACAGTGATT+CGG - chr8_1:70376147-70376166 Msa1211000:CDS 40.0%
CCACACAACACACTACTATT+AGG + chr8_1:70376199-70376218 None:intergenic 40.0%
CCTAATAGTAGTGTGTTGTG+TGG - chr8_1:70376196-70376215 Msa1211000:CDS 40.0%
AATTTCACTGGTAGTAGCAG+TGG - chr8_1:70376235-70376254 Msa1211000:CDS 40.0%
!! AGCAGTAGTAGTTCTAGTAG+TGG - chr8_1:70376268-70376287 Msa1211000:CDS 40.0%
!! AGTAGTAGTTCTAGTAGTGG+TGG - chr8_1:70376271-70376290 Msa1211000:CDS 40.0%
!! GTAGTAGTTCTAGTAGTGGT+GGG - chr8_1:70376272-70376291 Msa1211000:CDS 40.0%
! CTCTGGGAATATTACAGAAG+AGG - chr8_1:70376300-70376319 Msa1211000:CDS 40.0%
AGAAGAAGTAGAACATGAGG+AGG - chr8_1:70376336-70376355 Msa1211000:CDS 40.0%
!! ATGATGGATGCTTGGATGAT+TGG - chr8_1:70376365-70376384 Msa1211000:CDS 40.0%
! TGATGGATGCTTGGATGATT+GGG - chr8_1:70376366-70376385 Msa1211000:CDS 40.0%
AGATGAATCCGTTTCTGCAA+CGG + chr8_1:70376452-70376471 None:intergenic 40.0%
TCATCTTGTGAAGTGACTGA+TGG - chr8_1:70376466-70376485 Msa1211000:CDS 40.0%
GATGTTTGGATTCCAAACCA+GGG - chr8_1:70376500-70376519 Msa1211000:CDS 40.0%
CAGCAAATTGGACAATTGGA+TGG + chr8_1:70376679-70376698 None:intergenic 40.0%
CTCACAGCAAATTGGACAAT+TGG + chr8_1:70376683-70376702 None:intergenic 40.0%
!! CAATTGTCCAATTTGCTGTG+AGG - chr8_1:70376681-70376700 Msa1211000:CDS 40.0%
TCAAGATCCTCACAGCAAAT+TGG + chr8_1:70376691-70376710 None:intergenic 40.0%
! AGTTTTCTTCCGTGCAATTG+TGG - chr8_1:70376724-70376743 Msa1211000:CDS 40.0%
! TTCCGTGCAATTGTGGTTTT+CGG - chr8_1:70376731-70376750 Msa1211000:CDS 40.0%
! TTTGTCTCTTTTGCCACAAG+AGG - chr8_1:70376755-70376774 Msa1211000:CDS 40.0%
GTTCTGTTAGCATGATCGAA+AGG - chr8_1:70376887-70376906 Msa1211000:CDS 40.0%
! TGCGTCGTCTGTAATTTTCT+AGG - chr8_1:70376974-70376993 Msa1211000:intron 40.0%
TAAATGGTTACATCCTGCCA+TGG - chr8_1:70377163-70377182 Msa1211000:five_prime_UTR 40.0%
!! AGCTTTAAGGGAATATGCCA+TGG + chr8_1:70377183-70377202 None:intergenic 40.0%
! ACGCTGCAAAATGATGGAAT+TGG + chr8_1:70377239-70377258 None:intergenic 40.0%
!! AGGGTCCAGGTGGATTTTAT+CGG + chr8_1:70375521-70375540 None:intergenic 45.0%
!! ACCCTCATTCTGAGGCAAAA+AGG - chr8_1:70375536-70375555 Msa1211000:three_prime_UTR 45.0%
! CCCTTTTTGCCTCAGAATGA+GGG + chr8_1:70375540-70375559 None:intergenic 45.0%
!! CCCTCATTCTGAGGCAAAAA+GGG - chr8_1:70375537-70375556 Msa1211000:three_prime_UTR 45.0%
! CTTCTTTTTGCCAGGGTTCT+TGG + chr8_1:70375750-70375769 None:intergenic 45.0%
AGAACCCTGGCAAAAAGAAG+AGG - chr8_1:70375750-70375769 Msa1211000:three_prime_UTR 45.0%
GAACCCTGGCAAAAAGAAGA+GGG - chr8_1:70375751-70375770 Msa1211000:three_prime_UTR 45.0%
! CTTACCCTCTTCTTTTTGCC+AGG + chr8_1:70375758-70375777 None:intergenic 45.0%
CTGGCAAAAAGAAGAGGGTA+AGG - chr8_1:70375756-70375775 Msa1211000:three_prime_UTR 45.0%
CTTCAATTTCGCGGACCTAT+TGG + chr8_1:70375871-70375890 None:intergenic 45.0%
CGTGAACAATGGCTATCTCA+AGG - chr8_1:70375912-70375931 Msa1211000:CDS 45.0%
AAGAAGAAGGGTTGCAAGGA+TGG - chr8_1:70376019-70376038 Msa1211000:CDS 45.0%
ACGTGAATTGGAGAAAGTGG+GGG - chr8_1:70376093-70376112 Msa1211000:CDS 45.0%
ACTCCGAATCACTGTCTTGA+TGG + chr8_1:70376153-70376172 None:intergenic 45.0%
GGACTGATAGGACTGTTTGA+CGG + chr8_1:70376178-70376197 None:intergenic 45.0%
GTGTTGTGTGGCAATGATTC+CGG - chr8_1:70376208-70376227 Msa1211000:CDS 45.0%
TGTTGTGTGGCAATGATTCC+GGG - chr8_1:70376209-70376228 Msa1211000:CDS 45.0%
ACTACCAGTGAAATTCGTCC+CGG + chr8_1:70376230-70376249 None:intergenic 45.0%
AGAAGTAGAACATGAGGAGG+AGG - chr8_1:70376339-70376358 Msa1211000:CDS 45.0%
AGAGGCTCTATGCTTCTCAT+CGG + chr8_1:70376416-70376435 None:intergenic 45.0%
! AACGGGTTCATTCTGTGAAG+AGG + chr8_1:70376434-70376453 None:intergenic 45.0%
GAATGAACCCGTTGCAGAAA+CGG - chr8_1:70376441-70376460 Msa1211000:CDS 45.0%
GATGAATCCGTTTCTGCAAC+GGG + chr8_1:70376451-70376470 None:intergenic 45.0%
GGATGTTTGGATTCCAAACC+AGG - chr8_1:70376499-70376518 Msa1211000:CDS 45.0%
! ACAGGTTGGGTAAAGTCTGA+GGG + chr8_1:70376591-70376610 None:intergenic 45.0%
!! CTATGCTGTTTCGACAGGTT+GGG + chr8_1:70376604-70376623 None:intergenic 45.0%
!! ACTATGCTGTTTCGACAGGT+TGG + chr8_1:70376605-70376624 None:intergenic 45.0%
!! GCATACTATGCTGTTTCGAC+AGG + chr8_1:70376609-70376628 None:intergenic 45.0%
! ATGCCGAATCCACGTTTTGT+AGG - chr8_1:70376625-70376644 Msa1211000:CDS 45.0%
CCTCCTACAAAACGTGGATT+CGG + chr8_1:70376631-70376650 None:intergenic 45.0%
! CGAATCCACGTTTTGTAGGA+GGG - chr8_1:70376629-70376648 Msa1211000:CDS 45.0%
! GAATCCACGTTTTGTAGGAG+GGG - chr8_1:70376630-70376649 Msa1211000:CDS 45.0%
AGCCGAAAACCACAATTGCA+CGG + chr8_1:70376736-70376755 None:intergenic 45.0%
ACACTTGCTTCTGTCTCGAT+AGG + chr8_1:70376835-70376854 None:intergenic 45.0%
! ATGGAGGTAGCCTTACTCTT+CGG - chr8_1:70376857-70376876 Msa1211000:intron 45.0%
TTAAGGGAATATGCCATGGC+AGG + chr8_1:70377179-70377198 None:intergenic 45.0%
ACAACGACGCTGCAAAATGA+TGG + chr8_1:70377245-70377264 None:intergenic 45.0%
!! AGGGTCCAGGTGGATTTTAT+CGG + chr8_1:70375521-70375540 None:intergenic 45.0%
!! ACCCTCATTCTGAGGCAAAA+AGG - chr8_1:70375536-70375555 Msa1211000:three_prime_UTR 45.0%
! CCCTTTTTGCCTCAGAATGA+GGG + chr8_1:70375540-70375559 None:intergenic 45.0%
!! CCCTCATTCTGAGGCAAAAA+GGG - chr8_1:70375537-70375556 Msa1211000:three_prime_UTR 45.0%
! CTTCTTTTTGCCAGGGTTCT+TGG + chr8_1:70375750-70375769 None:intergenic 45.0%
AGAACCCTGGCAAAAAGAAG+AGG - chr8_1:70375750-70375769 Msa1211000:three_prime_UTR 45.0%
GAACCCTGGCAAAAAGAAGA+GGG - chr8_1:70375751-70375770 Msa1211000:three_prime_UTR 45.0%
! CTTACCCTCTTCTTTTTGCC+AGG + chr8_1:70375758-70375777 None:intergenic 45.0%
CTGGCAAAAAGAAGAGGGTA+AGG - chr8_1:70375756-70375775 Msa1211000:three_prime_UTR 45.0%
CTTCAATTTCGCGGACCTAT+TGG + chr8_1:70375871-70375890 None:intergenic 45.0%
CGTGAACAATGGCTATCTCA+AGG - chr8_1:70375912-70375931 Msa1211000:CDS 45.0%
AAGAAGAAGGGTTGCAAGGA+TGG - chr8_1:70376019-70376038 Msa1211000:CDS 45.0%
ACGTGAATTGGAGAAAGTGG+GGG - chr8_1:70376093-70376112 Msa1211000:CDS 45.0%
ACTCCGAATCACTGTCTTGA+TGG + chr8_1:70376153-70376172 None:intergenic 45.0%
GGACTGATAGGACTGTTTGA+CGG + chr8_1:70376178-70376197 None:intergenic 45.0%
GTGTTGTGTGGCAATGATTC+CGG - chr8_1:70376208-70376227 Msa1211000:CDS 45.0%
TGTTGTGTGGCAATGATTCC+GGG - chr8_1:70376209-70376228 Msa1211000:CDS 45.0%
ACTACCAGTGAAATTCGTCC+CGG + chr8_1:70376230-70376249 None:intergenic 45.0%
AGAAGTAGAACATGAGGAGG+AGG - chr8_1:70376339-70376358 Msa1211000:CDS 45.0%
AGAGGCTCTATGCTTCTCAT+CGG + chr8_1:70376416-70376435 None:intergenic 45.0%
! AACGGGTTCATTCTGTGAAG+AGG + chr8_1:70376434-70376453 None:intergenic 45.0%
GAATGAACCCGTTGCAGAAA+CGG - chr8_1:70376441-70376460 Msa1211000:CDS 45.0%
GATGAATCCGTTTCTGCAAC+GGG + chr8_1:70376451-70376470 None:intergenic 45.0%
GGATGTTTGGATTCCAAACC+AGG - chr8_1:70376499-70376518 Msa1211000:CDS 45.0%
! ACAGGTTGGGTAAAGTCTGA+GGG + chr8_1:70376591-70376610 None:intergenic 45.0%
!! CTATGCTGTTTCGACAGGTT+GGG + chr8_1:70376604-70376623 None:intergenic 45.0%
!! ACTATGCTGTTTCGACAGGT+TGG + chr8_1:70376605-70376624 None:intergenic 45.0%
!! GCATACTATGCTGTTTCGAC+AGG + chr8_1:70376609-70376628 None:intergenic 45.0%
! ATGCCGAATCCACGTTTTGT+AGG - chr8_1:70376625-70376644 Msa1211000:CDS 45.0%
CCTCCTACAAAACGTGGATT+CGG + chr8_1:70376631-70376650 None:intergenic 45.0%
! CGAATCCACGTTTTGTAGGA+GGG - chr8_1:70376629-70376648 Msa1211000:CDS 45.0%
! GAATCCACGTTTTGTAGGAG+GGG - chr8_1:70376630-70376649 Msa1211000:CDS 45.0%
AGCCGAAAACCACAATTGCA+CGG + chr8_1:70376736-70376755 None:intergenic 45.0%
ACACTTGCTTCTGTCTCGAT+AGG + chr8_1:70376835-70376854 None:intergenic 45.0%
! ATGGAGGTAGCCTTACTCTT+CGG - chr8_1:70376857-70376876 Msa1211000:intron 45.0%
TTAAGGGAATATGCCATGGC+AGG + chr8_1:70377179-70377198 None:intergenic 45.0%
ACAACGACGCTGCAAAATGA+TGG + chr8_1:70377245-70377264 None:intergenic 45.0%
! GCCCTTTTTGCCTCAGAATG+AGG + chr8_1:70375541-70375560 None:intergenic 50.0%
! TCTGAGGCAAAAAGGGCGAA+AGG - chr8_1:70375544-70375563 Msa1211000:three_prime_UTR 50.0%
AAATCCCAACGGTTCAGCCA+TGG - chr8_1:70375679-70375698 Msa1211000:three_prime_UTR 50.0%
GAAACCATGGCTGAACCGTT+GGG + chr8_1:70375686-70375705 None:intergenic 50.0%
GGCGATTGAATCGGAAACCA+TGG + chr8_1:70375699-70375718 None:intergenic 50.0%
TTGATGCGCGTCGTGAACAA+TGG - chr8_1:70375901-70375920 Msa1211000:CDS 50.0%
TTCAGGTGCGGTGAAGAAGA+AGG - chr8_1:70376006-70376025 Msa1211000:CDS 50.0%
TCAGGTGCGGTGAAGAAGAA+GGG - chr8_1:70376007-70376026 Msa1211000:CDS 50.0%
GGTGAAGAAGAAGGGTTGCA+AGG - chr8_1:70376015-70376034 Msa1211000:CDS 50.0%
GAAGGGTTGCAAGGATGGAT+TGG - chr8_1:70376024-70376043 Msa1211000:CDS 50.0%
GATTCCGGGACGAATTTCAC+TGG - chr8_1:70376223-70376242 Msa1211000:CDS 50.0%
TTCACTGGTAGTAGCAGTGG+TGG - chr8_1:70376238-70376257 Msa1211000:CDS 50.0%
!! AGTAGTGGTGGGTGTTTCTC+TGG - chr8_1:70376283-70376302 Msa1211000:CDS 50.0%
!! GTAGTGGTGGGTGTTTCTCT+GGG - chr8_1:70376284-70376303 Msa1211000:CDS 50.0%
CATGAGGAGGAGGATGATGA+TGG - chr8_1:70376349-70376368 Msa1211000:CDS 50.0%
!! GGAGGATGATGATGGATGCT+TGG - chr8_1:70376357-70376376 Msa1211000:CDS 50.0%
TGGATGCTTGGATGATTGGG+AGG - chr8_1:70376369-70376388 Msa1211000:CDS 50.0%
TTGGATTCCAAACCAGGGAG+TGG - chr8_1:70376505-70376524 Msa1211000:CDS 50.0%
! CATCCGGTAATGGCAAAGCT+TGG - chr8_1:70376545-70376564 Msa1211000:CDS 50.0%
CCTCCAAGCTTTGCCATTAC+CGG + chr8_1:70376551-70376570 None:intergenic 50.0%
! CGGTAATGGCAAAGCTTGGA+GGG - chr8_1:70376549-70376568 Msa1211000:CDS 50.0%
! GACAGGTTGGGTAAAGTCTG+AGG + chr8_1:70376592-70376611 None:intergenic 50.0%
! CCGAATCCACGTTTTGTAGG+AGG - chr8_1:70376628-70376647 Msa1211000:CDS 50.0%
CCTGCTCAAGAATCCTCTTG+TGG + chr8_1:70376771-70376790 None:intergenic 50.0%
CCACAAGAGGATTCTTGAGC+AGG - chr8_1:70376768-70376787 Msa1211000:CDS 50.0%
TCATATTGCTTCCTGCACCC+AGG + chr8_1:70376805-70376824 None:intergenic 50.0%
GAGACAGAAGCAAGTGTGCA+TGG - chr8_1:70376838-70376857 Msa1211000:intron 50.0%
ACAGAAGCAAGTGTGCATGG+AGG - chr8_1:70376841-70376860 Msa1211000:intron 50.0%
! AGGTAGCCTTACTCTTCGGT+TGG - chr8_1:70376861-70376880 Msa1211000:intron 50.0%
AACGAGCCAACCGAAGAGTA+AGG + chr8_1:70376870-70376889 None:intergenic 50.0%
! GCCCTTTTTGCCTCAGAATG+AGG + chr8_1:70375541-70375560 None:intergenic 50.0%
! TCTGAGGCAAAAAGGGCGAA+AGG - chr8_1:70375544-70375563 Msa1211000:three_prime_UTR 50.0%
AAATCCCAACGGTTCAGCCA+TGG - chr8_1:70375679-70375698 Msa1211000:three_prime_UTR 50.0%
GAAACCATGGCTGAACCGTT+GGG + chr8_1:70375686-70375705 None:intergenic 50.0%
GGCGATTGAATCGGAAACCA+TGG + chr8_1:70375699-70375718 None:intergenic 50.0%
TTGATGCGCGTCGTGAACAA+TGG - chr8_1:70375901-70375920 Msa1211000:CDS 50.0%
TTCAGGTGCGGTGAAGAAGA+AGG - chr8_1:70376006-70376025 Msa1211000:CDS 50.0%
TCAGGTGCGGTGAAGAAGAA+GGG - chr8_1:70376007-70376026 Msa1211000:CDS 50.0%
GGTGAAGAAGAAGGGTTGCA+AGG - chr8_1:70376015-70376034 Msa1211000:CDS 50.0%
GAAGGGTTGCAAGGATGGAT+TGG - chr8_1:70376024-70376043 Msa1211000:CDS 50.0%
GATTCCGGGACGAATTTCAC+TGG - chr8_1:70376223-70376242 Msa1211000:CDS 50.0%
TTCACTGGTAGTAGCAGTGG+TGG - chr8_1:70376238-70376257 Msa1211000:CDS 50.0%
!! AGTAGTGGTGGGTGTTTCTC+TGG - chr8_1:70376283-70376302 Msa1211000:CDS 50.0%
!! GTAGTGGTGGGTGTTTCTCT+GGG - chr8_1:70376284-70376303 Msa1211000:CDS 50.0%
CATGAGGAGGAGGATGATGA+TGG - chr8_1:70376349-70376368 Msa1211000:CDS 50.0%
!! GGAGGATGATGATGGATGCT+TGG - chr8_1:70376357-70376376 Msa1211000:CDS 50.0%
TGGATGCTTGGATGATTGGG+AGG - chr8_1:70376369-70376388 Msa1211000:CDS 50.0%
TTGGATTCCAAACCAGGGAG+TGG - chr8_1:70376505-70376524 Msa1211000:CDS 50.0%
! CATCCGGTAATGGCAAAGCT+TGG - chr8_1:70376545-70376564 Msa1211000:CDS 50.0%
CCTCCAAGCTTTGCCATTAC+CGG + chr8_1:70376551-70376570 None:intergenic 50.0%
! CGGTAATGGCAAAGCTTGGA+GGG - chr8_1:70376549-70376568 Msa1211000:CDS 50.0%
! GACAGGTTGGGTAAAGTCTG+AGG + chr8_1:70376592-70376611 None:intergenic 50.0%
! CCGAATCCACGTTTTGTAGG+AGG - chr8_1:70376628-70376647 Msa1211000:CDS 50.0%
CCTGCTCAAGAATCCTCTTG+TGG + chr8_1:70376771-70376790 None:intergenic 50.0%
CCACAAGAGGATTCTTGAGC+AGG - chr8_1:70376768-70376787 Msa1211000:CDS 50.0%
TCATATTGCTTCCTGCACCC+AGG + chr8_1:70376805-70376824 None:intergenic 50.0%
GAGACAGAAGCAAGTGTGCA+TGG - chr8_1:70376838-70376857 Msa1211000:intron 50.0%
ACAGAAGCAAGTGTGCATGG+AGG - chr8_1:70376841-70376860 Msa1211000:intron 50.0%
! AGGTAGCCTTACTCTTCGGT+TGG - chr8_1:70376861-70376880 Msa1211000:intron 50.0%
AACGAGCCAACCGAAGAGTA+AGG + chr8_1:70376870-70376889 None:intergenic 50.0%
TTGCCTCAGAATGAGGGTCC+AGG + chr8_1:70375534-70375553 None:intergenic 55.0%
GGAAACCATGGCTGAACCGT+TGG + chr8_1:70375687-70375706 None:intergenic 55.0%
GTGTTAGCGGCGGAAGGAAT+CGG + chr8_1:70375728-70375747 None:intergenic 55.0%
!! TTCTTGGTGTTAGCGGCGGA+AGG + chr8_1:70375734-70375753 None:intergenic 55.0%
!! AGGGTTCTTGGTGTTAGCGG+CGG + chr8_1:70375738-70375757 None:intergenic 55.0%
!! GCCAGGGTTCTTGGTGTTAG+CGG + chr8_1:70375741-70375760 None:intergenic 55.0%
CGTTTGCTCTGTTTCCCCAC+TGG + chr8_1:70376076-70376095 None:intergenic 55.0%
AATTGGAGAAAGTGGGGGCG+AGG - chr8_1:70376098-70376117 Msa1211000:CDS 55.0%
CTTGGATGATTGGGAGGCTG+TGG - chr8_1:70376375-70376394 Msa1211000:CDS 55.0%
GGCTCTATGCTTCTCATCGG+CGG + chr8_1:70376413-70376432 None:intergenic 55.0%
GATTCCAAACCAGGGAGTGG+TGG - chr8_1:70376508-70376527 Msa1211000:CDS 55.0%
! CAAACCAGGGAGTGGTGGAA+CGG - chr8_1:70376513-70376532 Msa1211000:CDS 55.0%
! CCGGTAATGGCAAAGCTTGG+AGG - chr8_1:70376548-70376567 Msa1211000:CDS 55.0%
GGTTGGGTAAAGTCTGAGGG+CGG + chr8_1:70376588-70376607 None:intergenic 55.0%
GGAACCCCTCCTACAAAACG+TGG + chr8_1:70376637-70376656 None:intergenic 55.0%
! GTTTTGTAGGAGGGGTTCCC+TGG - chr8_1:70376638-70376657 Msa1211000:CDS 55.0%
AGCAGGATGCTCGTTGTCCT+GGG - chr8_1:70376785-70376804 Msa1211000:intron 55.0%
TTGCCTCAGAATGAGGGTCC+AGG + chr8_1:70375534-70375553 None:intergenic 55.0%
GGAAACCATGGCTGAACCGT+TGG + chr8_1:70375687-70375706 None:intergenic 55.0%
GTGTTAGCGGCGGAAGGAAT+CGG + chr8_1:70375728-70375747 None:intergenic 55.0%
!! TTCTTGGTGTTAGCGGCGGA+AGG + chr8_1:70375734-70375753 None:intergenic 55.0%
!! AGGGTTCTTGGTGTTAGCGG+CGG + chr8_1:70375738-70375757 None:intergenic 55.0%
!! GCCAGGGTTCTTGGTGTTAG+CGG + chr8_1:70375741-70375760 None:intergenic 55.0%
CGTTTGCTCTGTTTCCCCAC+TGG + chr8_1:70376076-70376095 None:intergenic 55.0%
AATTGGAGAAAGTGGGGGCG+AGG - chr8_1:70376098-70376117 Msa1211000:CDS 55.0%
CTTGGATGATTGGGAGGCTG+TGG - chr8_1:70376375-70376394 Msa1211000:CDS 55.0%
GGCTCTATGCTTCTCATCGG+CGG + chr8_1:70376413-70376432 None:intergenic 55.0%
GATTCCAAACCAGGGAGTGG+TGG - chr8_1:70376508-70376527 Msa1211000:CDS 55.0%
! CAAACCAGGGAGTGGTGGAA+CGG - chr8_1:70376513-70376532 Msa1211000:CDS 55.0%
! CCGGTAATGGCAAAGCTTGG+AGG - chr8_1:70376548-70376567 Msa1211000:CDS 55.0%
GGTTGGGTAAAGTCTGAGGG+CGG + chr8_1:70376588-70376607 None:intergenic 55.0%
GGAACCCCTCCTACAAAACG+TGG + chr8_1:70376637-70376656 None:intergenic 55.0%
! GTTTTGTAGGAGGGGTTCCC+TGG - chr8_1:70376638-70376657 Msa1211000:CDS 55.0%
AGCAGGATGCTCGTTGTCCT+GGG - chr8_1:70376785-70376804 Msa1211000:intron 55.0%
CCTCAGAATGAGGGTCCAGG+TGG + chr8_1:70375531-70375550 None:intergenic 60.0%
CCACCTGGACCCTCATTCTG+AGG - chr8_1:70375528-70375547 Msa1211000:three_prime_UTR 60.0%
CGGAACGGCGGCGATTGAAT+CGG + chr8_1:70375708-70375727 None:intergenic 60.0%
AGCGGCGGAAGGAATCGGAA+CGG + chr8_1:70375723-70375742 None:intergenic 60.0%
GCCGCTAACACCAAGAACCC+TGG - chr8_1:70375737-70375756 Msa1211000:three_prime_UTR 60.0%
TGTTTCCCCACTGGCGACGA+CGG + chr8_1:70376067-70376086 None:intergenic 60.0%
CGTTCCACCACTCCCTGGTT+TGG + chr8_1:70376515-70376534 None:intergenic 60.0%
! GGAGTGGTGGAACGGTTCCT+CGG - chr8_1:70376521-70376540 Msa1211000:CDS 60.0%
! GAGTGGTGGAACGGTTCCTC+GGG - chr8_1:70376522-70376541 Msa1211000:CDS 60.0%
GTTCCTCGGGCATCCGGTAA+TGG - chr8_1:70376535-70376554 Msa1211000:CDS 60.0%
TTGCCATTACCGGATGCCCG+AGG + chr8_1:70376541-70376560 None:intergenic 60.0%
GGCACAGACATGCGAGACCA+GGG + chr8_1:70376658-70376677 None:intergenic 60.0%
TGGCACAGACATGCGAGACC+AGG + chr8_1:70376659-70376678 None:intergenic 60.0%
GAGCAGGATGCTCGTTGTCC+TGG - chr8_1:70376784-70376803 Msa1211000:CDS 60.0%
ATGCTCGTTGTCCTGGGTGC+AGG - chr8_1:70376791-70376810 Msa1211000:intron 60.0%
CCTCAGAATGAGGGTCCAGG+TGG + chr8_1:70375531-70375550 None:intergenic 60.0%
CCACCTGGACCCTCATTCTG+AGG - chr8_1:70375528-70375547 Msa1211000:three_prime_UTR 60.0%
CGGAACGGCGGCGATTGAAT+CGG + chr8_1:70375708-70375727 None:intergenic 60.0%
AGCGGCGGAAGGAATCGGAA+CGG + chr8_1:70375723-70375742 None:intergenic 60.0%
GCCGCTAACACCAAGAACCC+TGG - chr8_1:70375737-70375756 Msa1211000:three_prime_UTR 60.0%
TGTTTCCCCACTGGCGACGA+CGG + chr8_1:70376067-70376086 None:intergenic 60.0%
CGTTCCACCACTCCCTGGTT+TGG + chr8_1:70376515-70376534 None:intergenic 60.0%
! GGAGTGGTGGAACGGTTCCT+CGG - chr8_1:70376521-70376540 Msa1211000:CDS 60.0%
! GAGTGGTGGAACGGTTCCTC+GGG - chr8_1:70376522-70376541 Msa1211000:CDS 60.0%
GTTCCTCGGGCATCCGGTAA+TGG - chr8_1:70376535-70376554 Msa1211000:CDS 60.0%
TTGCCATTACCGGATGCCCG+AGG + chr8_1:70376541-70376560 None:intergenic 60.0%
GGCACAGACATGCGAGACCA+GGG + chr8_1:70376658-70376677 None:intergenic 60.0%
TGGCACAGACATGCGAGACC+AGG + chr8_1:70376659-70376678 None:intergenic 60.0%
GAGCAGGATGCTCGTTGTCC+TGG - chr8_1:70376784-70376803 Msa1211000:CDS 60.0%
ATGCTCGTTGTCCTGGGTGC+AGG - chr8_1:70376791-70376810 Msa1211000:intron 60.0%
GGCGGAAGGAATCGGAACGG+CGG + chr8_1:70375720-70375739 None:intergenic 65.0%
CATGTGCCGTCGTCGCCAGT+GGG - chr8_1:70376058-70376077 Msa1211000:CDS 65.0%
ATGTGCCGTCGTCGCCAGTG+GGG - chr8_1:70376059-70376078 Msa1211000:CDS 65.0%
AAAGTGGGGGCGAGGCGTAG+AGG - chr8_1:70376106-70376125 Msa1211000:CDS 65.0%
GGAACCGTTCCACCACTCCC+TGG + chr8_1:70376520-70376539 None:intergenic 65.0%
GGAACGGTTCCTCGGGCATC+CGG - chr8_1:70376529-70376548 Msa1211000:CDS 65.0%
GGCGGAAGGAATCGGAACGG+CGG + chr8_1:70375720-70375739 None:intergenic 65.0%
CATGTGCCGTCGTCGCCAGT+GGG - chr8_1:70376058-70376077 Msa1211000:CDS 65.0%
ATGTGCCGTCGTCGCCAGTG+GGG - chr8_1:70376059-70376078 Msa1211000:CDS 65.0%
AAAGTGGGGGCGAGGCGTAG+AGG - chr8_1:70376106-70376125 Msa1211000:CDS 65.0%
GGAACCGTTCCACCACTCCC+TGG + chr8_1:70376520-70376539 None:intergenic 65.0%
GGAACGGTTCCTCGGGCATC+CGG - chr8_1:70376529-70376548 Msa1211000:CDS 65.0%
CCACTGGCGACGACGGCACA+TGG + chr8_1:70376060-70376079 None:intergenic 70.0%
CCATGTGCCGTCGTCGCCAG+TGG - chr8_1:70376057-70376076 Msa1211000:CDS 70.0%
GGCGAGGCGTAGAGGTGGAG+AGG - chr8_1:70376114-70376133 Msa1211000:CDS 70.0%
CCACTGGCGACGACGGCACA+TGG + chr8_1:70376060-70376079 None:intergenic 70.0%
CCATGTGCCGTCGTCGCCAG+TGG - chr8_1:70376057-70376076 Msa1211000:CDS 70.0%
GGCGAGGCGTAGAGGTGGAG+AGG - chr8_1:70376114-70376133 Msa1211000:CDS 70.0%
GTGGGGGCGAGGCGTAGAGG+TGG - chr8_1:70376109-70376128 Msa1211000:CDS 75.0%
GTGGGGGCGAGGCGTAGAGG+TGG - chr8_1:70376109-70376128 Msa1211000:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70375487 70377327 70375487 ID=Msa1211000;Name=Msa1211000
chr8_1 mRNA 70375487 70377327 70375487 ID=Msa1211000-mRNA-1;Parent=Msa1211000;Name=Msa1211000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=211|1|1|1|1|1|3|412|348
chr8_1 exon 70375487 70376803 70375487 ID=Msa1211000-mRNA-1:exon:23533;Parent=Msa1211000-mRNA-1
chr8_1 exon 70376881 70376947 70376881 ID=Msa1211000-mRNA-1:exon:23532;Parent=Msa1211000-mRNA-1
chr8_1 exon 70377042 70377327 70377042 ID=Msa1211000-mRNA-1:exon:23531;Parent=Msa1211000-mRNA-1
chr8_1 five_prime_UTR 70377117 70377327 70377117 ID=Msa1211000-mRNA-1:five_prime_utr;Parent=Msa1211000-mRNA-1
chr8_1 CDS 70377042 70377116 70377042 ID=Msa1211000-mRNA-1:cds;Parent=Msa1211000-mRNA-1
chr8_1 CDS 70376881 70376947 70376881 ID=Msa1211000-mRNA-1:cds;Parent=Msa1211000-mRNA-1
chr8_1 CDS 70375899 70376803 70375899 ID=Msa1211000-mRNA-1:cds;Parent=Msa1211000-mRNA-1
chr8_1 three_prime_UTR 70375487 70375898 70375487 ID=Msa1211000-mRNA-1:three_prime_utr;Parent=Msa1211000-mRNA-1
Gene Sequence

>Msa1211000

ATGGTTTCCGATTCAATCGCCGCCGTTCCGATTCCTTCCGCCGCTAACACCAAGAACCCTGGCAAAAAGAAGAGGACCAATAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGTGAACAATGGCTATCTCAAGGTGCGGTGAAGAAGAAGGGTTGCAAGGATGGATTGGACGATGATGTCCATGTGCCGTCGTCGCCAGTGGGGAAACAGAGCAAACGTGAATTGGAGAAAGTGGGGGCGAGGCGTAGAGGTGGAGAGGATGATGTGTTGATCCATCAAGACAGTGATTCGGAGTCACCGTCAAACAGTCCTATCAGTCCTAATAGTAGTGTGTTGTGTGGCAATGATTCCGGGACGAATTTCACTGGTAGTAGCAGTGGTGGAAGCAGTAGCAGTAGTAGTTCTAGTAGTGGTGGGTGTTTCTCTGGGAATATTACAGAAGAGGAAGAAGATGATGAAGAAGAAGTAGAACATGAGGAGGAGGATGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAGAAGCATAGAGCCTCTTCACAGAATGAACCCGTTGCAGAAACGGATTCATCTTGTGAAGTGACTGATGGTTTGAATTTAGGATGTTTGGATTCCAAACCAGGGAGTGGTGGAACGGTTCCTCGGGCATCCGGTAATGGCAAAGCTTGGAGGGCTGATGATGCTTTCCGCCCTCAGACTTTACCCAACCTGTCGAAACAGCATAGTATGCCGAATCCACGTTTTGTAGGAGGGGTTCCCTGGTCTCGCATGTCTGTGCCATCCAATTGTCCAATTTGCTGTGAGGATCTTGATTTAACGGACACAAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAGGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCATGGAGGTAGCCTTACTCTTCGGTTGGCTCGTTCTGTTAGCATGATCGAAAGGTCTTGA

Protein sequence

>Msa1211000

MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVPSSPVGKQSKRELEKVGARRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCFSGNITEEEEDDEEEVEHEEEDDDGCLDDWEAVADALAADEKHRASSQNEPVAETDSSCEVTDGLNLGCLDSKPGSGGTVPRASGNGKAWRADDAFRPQTLPNLSKQHSMPNPRFVGGVPWSRMSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS*