Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302540 | XP_003610522.1 | 64.417 | 163 | 10 | 3 | 1 | 138 | 1 | 140 | 2.85e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302540 | G7JKJ2 | 64.417 | 163 | 10 | 3 | 1 | 138 | 1 | 140 | 1.36e-28 | 111 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa1302540 | 0.819001 | 1.460711e-52 | -8.615850e-47 |
| Msa0029730 | Msa1302540 | 0.803958 | 2.718804e-49 | -8.615850e-47 |
| Msa0032130 | Msa1302540 | 0.841545 | 4.452865e-58 | -8.615850e-47 |
| Msa0032390 | Msa1302540 | 0.845954 | 2.942738e-59 | -8.615850e-47 |
| Msa0045620 | Msa1302540 | 0.804909 | 1.722711e-49 | -8.615850e-47 |
| Msa0057860 | Msa1302540 | 0.806083 | 9.773109e-50 | -8.615850e-47 |
| Msa0073270 | Msa1302540 | 0.812572 | 3.962231e-51 | -8.615850e-47 |
| Msa0102920 | Msa1302540 | 0.811491 | 6.816542e-51 | -8.615850e-47 |
| Msa0623310 | Msa1302540 | 0.806164 | 9.395665e-50 | -8.615850e-47 |
| Msa0679560 | Msa1302540 | -0.803523 | 3.347518e-49 | -8.615850e-47 |
| Msa0716700 | Msa1302540 | 0.807025 | 6.183339e-50 | -8.615850e-47 |
| Msa0746090 | Msa1302540 | 0.930632 | 1.234631e-93 | -8.615850e-47 |
| Msa0147680 | Msa1302540 | 0.830370 | 3.050773e-55 | -8.615850e-47 |
| Msa0185690 | Msa1302540 | 0.842749 | 2.138328e-58 | -8.615850e-47 |
| Msa1302540 | Msa1376310 | 0.800384 | 1.477899e-48 | -8.615850e-47 |
| Msa1302540 | Msa1398490 | 0.843999 | 9.914797e-59 | -8.615850e-47 |
| Msa1302540 | Msa1407670 | 0.829441 | 5.137873e-55 | -8.615850e-47 |
| Msa1302540 | Msa1417950 | 0.804851 | 1.770910e-49 | -8.615850e-47 |
| Msa1302540 | Msa1447900 | 0.825135 | 5.528498e-54 | -8.615850e-47 |
| Msa1302540 | Msa1449770 | 0.825872 | 3.698636e-54 | -8.615850e-47 |
| Msa0436830 | Msa1302540 | -0.800225 | 1.592734e-48 | -8.615850e-47 |
| Msa0467250 | Msa1302540 | 0.810525 | 1.104015e-50 | -8.615850e-47 |
| Msa0987670 | Msa1302540 | 0.805950 | 1.042051e-49 | -8.615850e-47 |
| Msa1060300 | Msa1302540 | 0.802676 | 5.010086e-49 | -8.615850e-47 |
| Msa0329650 | Msa1302540 | 0.809243 | 2.082963e-50 | -8.615850e-47 |
| Msa0349930 | Msa1302540 | 0.804395 | 2.204939e-49 | -8.615850e-47 |
| Msa1130770 | Msa1302540 | 0.811868 | 5.644686e-51 | -8.615850e-47 |
| Msa1180840 | Msa1302540 | 0.818506 | 1.891521e-52 | -8.615850e-47 |
| Msa0528040 | Msa1302540 | 0.809657 | 1.697674e-50 | -8.615850e-47 |
| Msa0566460 | Msa1302540 | 0.803481 | 3.415186e-49 | -8.615850e-47 |
| Msa0846900 | Msa1302540 | 0.812720 | 3.677957e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302540 | MtrunA17_Chr4g0075751 | 64.417 | 163 | 10 | 3 | 1 | 138 | 1 | 140 | 2.62e-32 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCACTGTTACTACTTCTT+CGG | 0.326738 | 8_3:-65120390 | None:intergenic |
| TTACCTCAACAGTGGCCATT+TGG | 0.390008 | 8_3:-65119776 | None:intergenic |
| GTGGTGGTTACTTCTTCAAC+TGG | 0.408262 | 8_3:-65120647 | None:intergenic |
| CGGGTTCTCTACCTCTGCCT+TGG | 0.417414 | 8_3:-65120468 | None:intergenic |
| TTCTTCAACTGGTGCTGCTA+TGG | 0.423717 | 8_3:-65120636 | None:intergenic |
| TGTGTACTCTCAGCTTCAAC+TGG | 0.435451 | 8_3:-65120431 | None:intergenic |
| GAAATATGAACTAGCAAGAA+AGG | 0.445512 | 8_3:-65119730 | None:intergenic |
| ACTACTTCTTCGGTGGTGGC+TGG | 0.451704 | 8_3:-65120380 | None:intergenic |
| TGTTACTACTTCTTCGGTGG+TGG | 0.470019 | 8_3:-65120384 | None:intergenic |
| ATTCATCTTTCCATTCCAAA+TGG | 0.477645 | 8_3:+65119761 | Msa1302540:exon |
| CAAGGCAGAGGTAGAGAACC+CGG | 0.480116 | 8_3:+65120469 | Msa1302540:CDS |
| CGGTGTTGTTTCCTCGACCT+TGG | 0.487832 | 8_3:-65120333 | None:intergenic |
| CACTGTTACTACTTCTTCGG+TGG | 0.532727 | 8_3:-65120387 | None:intergenic |
| GGTGGTGGCTGGTTCTGAAG+TGG | 0.534204 | 8_3:-65120369 | None:intergenic |
| AGAGGAAGTATCAGCTGAAG+AGG | 0.536609 | 8_3:+65120514 | Msa1302540:CDS |
| ATTCCAAATGGCCACTGTTG+AGG | 0.536707 | 8_3:+65119773 | Msa1302540:exon |
| AACTGAGGAAGCCAAGGCAG+AGG | 0.538217 | 8_3:+65120457 | Msa1302540:CDS |
| GAAGTAGTAACAGTGGAGAA+AGG | 0.540973 | 8_3:+65120395 | Msa1302540:CDS |
| TCAACAGTGGCCATTTGGAA+TGG | 0.543349 | 8_3:-65119771 | None:intergenic |
| GTGGTGGCTGGTTCTGAAGT+GGG | 0.546159 | 8_3:-65120368 | None:intergenic |
| GAAGTGGGAACCTCGGAGGC+CGG | 0.549296 | 8_3:-65120353 | None:intergenic |
| TAAAGAAACTACTGAAACAC+CGG | 0.564807 | 8_3:+65120538 | Msa1302540:CDS |
| AGAGGAAGTATCAACTGAAG+AGG | 0.587702 | 8_3:+65120583 | Msa1302540:CDS |
| TGGTTCTGAAGTGGGAACCT+CGG | 0.596316 | 8_3:-65120360 | None:intergenic |
| AGTTGAGGTAACCAAGGTCG+AGG | 0.604857 | 8_3:+65120322 | Msa1302540:CDS |
| GACAGAAAATGAAACAGTTG+AGG | 0.607247 | 8_3:+65120307 | Msa1302540:CDS |
| ACAAGTAACTGAGGAAGCCA+AGG | 0.616520 | 8_3:+65120451 | Msa1302540:CDS |
| TGAGAGTACACAAGTAACTG+AGG | 0.633074 | 8_3:+65120442 | Msa1302540:CDS |
| TGAAACAGTTGAGGTAACCA+AGG | 0.643241 | 8_3:+65120316 | Msa1302540:CDS |
| TTCTGAAGTGGGAACCTCGG+AGG | 0.645606 | 8_3:-65120357 | None:intergenic |
| GGAAACAACACCGGCCTCCG+AGG | 0.649162 | 8_3:+65120343 | Msa1302540:CDS |
| CACCGAAGAAGTAGTAACAG+TGG | 0.674611 | 8_3:+65120388 | Msa1302540:CDS |
| TCTTTGAATTACCTCAACAG+TGG | 0.681859 | 8_3:-65119784 | None:intergenic |
| CAAGGTCGAGGAAACAACAC+CGG | 0.700669 | 8_3:+65120334 | Msa1302540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTATTGATCTTTTT+TGG | - | chr8_3:65120052-65120071 | None:intergenic | 15.0% |
| !!! | AATTGATTATTGATCTTTTT+TGG | - | chr8_3:65120052-65120071 | None:intergenic | 15.0% |
| !! | AAACAAAAATATTAGTCCAA+TGG | + | chr8_3:65119972-65119991 | Msa1302540:intron | 20.0% |
| !!! | ATTTGTTGTTTATAATCCAT+TGG | - | chr8_3:65119991-65120010 | None:intergenic | 20.0% |
| !! | GATTATGAAAAATAAACACA+GGG | - | chr8_3:65120030-65120049 | None:intergenic | 20.0% |
| !! | AAACAAAAATATTAGTCCAA+TGG | + | chr8_3:65119972-65119991 | Msa1302540:intron | 20.0% |
| !!! | ATTTGTTGTTTATAATCCAT+TGG | - | chr8_3:65119991-65120010 | None:intergenic | 20.0% |
| !! | GATTATGAAAAATAAACACA+GGG | - | chr8_3:65120030-65120049 | None:intergenic | 20.0% |
| !!! | AATATTTTTGTTTGATCCAC+TGG | - | chr8_3:65119965-65119984 | None:intergenic | 25.0% |
| ! | GGATTATGAAAAATAAACAC+AGG | - | chr8_3:65120031-65120050 | None:intergenic | 25.0% |
| !!! | AATATTTTTGTTTGATCCAC+TGG | - | chr8_3:65119965-65119984 | None:intergenic | 25.0% |
| ! | GGATTATGAAAAATAAACAC+AGG | - | chr8_3:65120031-65120050 | None:intergenic | 25.0% |
| GAAATATGAACTAGCAAGAA+AGG | - | chr8_3:65119733-65119752 | None:intergenic | 30.0% | |
| ATTCATCTTTCCATTCCAAA+TGG | + | chr8_3:65119761-65119780 | Msa1302540:exon | 30.0% | |
| ATATGACCAAGTAACTCATA+GGG | - | chr8_3:65120205-65120224 | None:intergenic | 30.0% | |
| TATATGACCAAGTAACTCAT+AGG | - | chr8_3:65120206-65120225 | None:intergenic | 30.0% | |
| TAACAAAACATGTTGAGCAT+TGG | + | chr8_3:65120230-65120249 | Msa1302540:intron | 30.0% | |
| !! | TCTTTCACTTCAACTTTTTC+AGG | - | chr8_3:65120497-65120516 | None:intergenic | 30.0% |
| TGAAAAAGTTGAAGTGAAAG+AGG | + | chr8_3:65120496-65120515 | Msa1302540:CDS | 30.0% | |
| TAAAGAAACTACTGAAACAC+CGG | + | chr8_3:65120538-65120557 | Msa1302540:CDS | 30.0% | |
| GAAATATGAACTAGCAAGAA+AGG | - | chr8_3:65119733-65119752 | None:intergenic | 30.0% | |
| ATTCATCTTTCCATTCCAAA+TGG | + | chr8_3:65119761-65119780 | Msa1302540:exon | 30.0% | |
| ATATGACCAAGTAACTCATA+GGG | - | chr8_3:65120205-65120224 | None:intergenic | 30.0% | |
| TATATGACCAAGTAACTCAT+AGG | - | chr8_3:65120206-65120225 | None:intergenic | 30.0% | |
| TAACAAAACATGTTGAGCAT+TGG | + | chr8_3:65120230-65120249 | Msa1302540:intron | 30.0% | |
| !! | TCTTTCACTTCAACTTTTTC+AGG | - | chr8_3:65120497-65120516 | None:intergenic | 30.0% |
| TGAAAAAGTTGAAGTGAAAG+AGG | + | chr8_3:65120496-65120515 | Msa1302540:CDS | 30.0% | |
| TAAAGAAACTACTGAAACAC+CGG | + | chr8_3:65120538-65120557 | Msa1302540:CDS | 30.0% | |
| TCTTTGAATTACCTCAACAG+TGG | - | chr8_3:65119787-65119806 | None:intergenic | 35.0% | |
| ! | GCATTGGTGGTTAATGAAAA+TGG | + | chr8_3:65120246-65120265 | Msa1302540:intron | 35.0% |
| TTAATGAAAATGGATCCTGC+AGG | + | chr8_3:65120256-65120275 | Msa1302540:intron | 35.0% | |
| ! | TCATTTTCTGTCACAGTTGT+TGG | - | chr8_3:65120299-65120318 | None:intergenic | 35.0% |
| GACAGAAAATGAAACAGTTG+AGG | + | chr8_3:65120307-65120326 | Msa1302540:CDS | 35.0% | |
| !!! | ACTTCAACTTTTTCAGGTTC+CGG | - | chr8_3:65120491-65120510 | None:intergenic | 35.0% |
| !! | TCTTTTGCTTCGACTTTTTC+GGG | - | chr8_3:65120566-65120585 | None:intergenic | 35.0% |
| ! | CTCTTTTGCTTCGACTTTTT+CGG | - | chr8_3:65120567-65120586 | None:intergenic | 35.0% |
| TCTTTGAATTACCTCAACAG+TGG | - | chr8_3:65119787-65119806 | None:intergenic | 35.0% | |
| ! | GCATTGGTGGTTAATGAAAA+TGG | + | chr8_3:65120246-65120265 | Msa1302540:intron | 35.0% |
| TTAATGAAAATGGATCCTGC+AGG | + | chr8_3:65120256-65120275 | Msa1302540:intron | 35.0% | |
| ! | TCATTTTCTGTCACAGTTGT+TGG | - | chr8_3:65120299-65120318 | None:intergenic | 35.0% |
| GACAGAAAATGAAACAGTTG+AGG | + | chr8_3:65120307-65120326 | Msa1302540:CDS | 35.0% | |
| !!! | ACTTCAACTTTTTCAGGTTC+CGG | - | chr8_3:65120491-65120510 | None:intergenic | 35.0% |
| !! | TCTTTTGCTTCGACTTTTTC+GGG | - | chr8_3:65120566-65120585 | None:intergenic | 35.0% |
| ! | CTCTTTTGCTTCGACTTTTT+CGG | - | chr8_3:65120567-65120586 | None:intergenic | 35.0% |
| ! | ATTCACACAGCATTTTCCAG+TGG | + | chr8_3:65119946-65119965 | Msa1302540:intron | 40.0% |
| CATGTTCCCTATGAGTTACT+TGG | + | chr8_3:65120196-65120215 | Msa1302540:intron | 40.0% | |
| !! | CAAAACATGTTGAGCATTGG+TGG | + | chr8_3:65120233-65120252 | Msa1302540:intron | 40.0% |
| TGAAACAGTTGAGGTAACCA+AGG | + | chr8_3:65120316-65120335 | Msa1302540:CDS | 40.0% | |
| CTCCACTGTTACTACTTCTT+CGG | - | chr8_3:65120393-65120412 | None:intergenic | 40.0% | |
| GAAGTAGTAACAGTGGAGAA+AGG | + | chr8_3:65120395-65120414 | Msa1302540:CDS | 40.0% | |
| ! | TGAGAGTACACAAGTAACTG+AGG | + | chr8_3:65120442-65120461 | Msa1302540:CDS | 40.0% |
| !!! | CTTCAACTTTTTCAGGTTCC+GGG | - | chr8_3:65120490-65120509 | None:intergenic | 40.0% |
| CGAAAAAGTCGAAGCAAAAG+AGG | + | chr8_3:65120565-65120584 | Msa1302540:CDS | 40.0% | |
| !! | AGAGGAAGTATCAACTGAAG+AGG | + | chr8_3:65120583-65120602 | Msa1302540:CDS | 40.0% |
| ! | ATTCACACAGCATTTTCCAG+TGG | + | chr8_3:65119946-65119965 | Msa1302540:intron | 40.0% |
| CATGTTCCCTATGAGTTACT+TGG | + | chr8_3:65120196-65120215 | Msa1302540:intron | 40.0% | |
| !! | CAAAACATGTTGAGCATTGG+TGG | + | chr8_3:65120233-65120252 | Msa1302540:intron | 40.0% |
| TGAAACAGTTGAGGTAACCA+AGG | + | chr8_3:65120316-65120335 | Msa1302540:CDS | 40.0% | |
| CTCCACTGTTACTACTTCTT+CGG | - | chr8_3:65120393-65120412 | None:intergenic | 40.0% | |
| GAAGTAGTAACAGTGGAGAA+AGG | + | chr8_3:65120395-65120414 | Msa1302540:CDS | 40.0% | |
| ! | TGAGAGTACACAAGTAACTG+AGG | + | chr8_3:65120442-65120461 | Msa1302540:CDS | 40.0% |
| !!! | CTTCAACTTTTTCAGGTTCC+GGG | - | chr8_3:65120490-65120509 | None:intergenic | 40.0% |
| CGAAAAAGTCGAAGCAAAAG+AGG | + | chr8_3:65120565-65120584 | Msa1302540:CDS | 40.0% | |
| !! | AGAGGAAGTATCAACTGAAG+AGG | + | chr8_3:65120583-65120602 | Msa1302540:CDS | 40.0% |
| TCAACAGTGGCCATTTGGAA+TGG | - | chr8_3:65119774-65119793 | None:intergenic | 45.0% | |
| ATTCCAAATGGCCACTGTTG+AGG | + | chr8_3:65119773-65119792 | Msa1302540:exon | 45.0% | |
| TTACCTCAACAGTGGCCATT+TGG | - | chr8_3:65119779-65119798 | None:intergenic | 45.0% | |
| ! | TTTGCTGTGTTTCAACCTGC+AGG | - | chr8_3:65120274-65120293 | None:intergenic | 45.0% |
| TGTTACTACTTCTTCGGTGG+TGG | - | chr8_3:65120387-65120406 | None:intergenic | 45.0% | |
| CACTGTTACTACTTCTTCGG+TGG | - | chr8_3:65120390-65120409 | None:intergenic | 45.0% | |
| CACCGAAGAAGTAGTAACAG+TGG | + | chr8_3:65120388-65120407 | Msa1302540:CDS | 45.0% | |
| TGTGTACTCTCAGCTTCAAC+TGG | - | chr8_3:65120434-65120453 | None:intergenic | 45.0% | |
| ACAAGTAACTGAGGAAGCCA+AGG | + | chr8_3:65120451-65120470 | Msa1302540:CDS | 45.0% | |
| !! | AGAGGAAGTATCAGCTGAAG+AGG | + | chr8_3:65120514-65120533 | Msa1302540:CDS | 45.0% |
| !! | TTCTTCAACTGGTGCTGCTA+TGG | - | chr8_3:65120639-65120658 | None:intergenic | 45.0% |
| GTGGTGGTTACTTCTTCAAC+TGG | - | chr8_3:65120650-65120669 | None:intergenic | 45.0% | |
| TCAACAGTGGCCATTTGGAA+TGG | - | chr8_3:65119774-65119793 | None:intergenic | 45.0% | |
| ATTCCAAATGGCCACTGTTG+AGG | + | chr8_3:65119773-65119792 | Msa1302540:exon | 45.0% | |
| TTACCTCAACAGTGGCCATT+TGG | - | chr8_3:65119779-65119798 | None:intergenic | 45.0% | |
| ! | TTTGCTGTGTTTCAACCTGC+AGG | - | chr8_3:65120274-65120293 | None:intergenic | 45.0% |
| TGTTACTACTTCTTCGGTGG+TGG | - | chr8_3:65120387-65120406 | None:intergenic | 45.0% | |
| CACTGTTACTACTTCTTCGG+TGG | - | chr8_3:65120390-65120409 | None:intergenic | 45.0% | |
| CACCGAAGAAGTAGTAACAG+TGG | + | chr8_3:65120388-65120407 | Msa1302540:CDS | 45.0% | |
| TGTGTACTCTCAGCTTCAAC+TGG | - | chr8_3:65120434-65120453 | None:intergenic | 45.0% | |
| ACAAGTAACTGAGGAAGCCA+AGG | + | chr8_3:65120451-65120470 | Msa1302540:CDS | 45.0% | |
| !! | AGAGGAAGTATCAGCTGAAG+AGG | + | chr8_3:65120514-65120533 | Msa1302540:CDS | 45.0% |
| !! | TTCTTCAACTGGTGCTGCTA+TGG | - | chr8_3:65120639-65120658 | None:intergenic | 45.0% |
| GTGGTGGTTACTTCTTCAAC+TGG | - | chr8_3:65120650-65120669 | None:intergenic | 45.0% | |
| AGTTGAGGTAACCAAGGTCG+AGG | + | chr8_3:65120322-65120341 | Msa1302540:CDS | 50.0% | |
| CAAGGTCGAGGAAACAACAC+CGG | + | chr8_3:65120334-65120353 | Msa1302540:CDS | 50.0% | |
| !! | TGGTTCTGAAGTGGGAACCT+CGG | - | chr8_3:65120363-65120382 | None:intergenic | 50.0% |
| AGTTGAGGTAACCAAGGTCG+AGG | + | chr8_3:65120322-65120341 | Msa1302540:CDS | 50.0% | |
| CAAGGTCGAGGAAACAACAC+CGG | + | chr8_3:65120334-65120353 | Msa1302540:CDS | 50.0% | |
| !! | TGGTTCTGAAGTGGGAACCT+CGG | - | chr8_3:65120363-65120382 | None:intergenic | 50.0% |
| !! | CGGTGTTGTTTCCTCGACCT+TGG | - | chr8_3:65120336-65120355 | None:intergenic | 55.0% |
| !! | TTCTGAAGTGGGAACCTCGG+AGG | - | chr8_3:65120360-65120379 | None:intergenic | 55.0% |
| !! | GTGGTGGCTGGTTCTGAAGT+GGG | - | chr8_3:65120371-65120390 | None:intergenic | 55.0% |
| ! | ACTACTTCTTCGGTGGTGGC+TGG | - | chr8_3:65120383-65120402 | None:intergenic | 55.0% |
| AACTGAGGAAGCCAAGGCAG+AGG | + | chr8_3:65120457-65120476 | Msa1302540:CDS | 55.0% | |
| CAAGGCAGAGGTAGAGAACC+CGG | + | chr8_3:65120469-65120488 | Msa1302540:CDS | 55.0% | |
| !!! | GCTTCGACTTTTTCGGGTGC+CGG | - | chr8_3:65120560-65120579 | None:intergenic | 55.0% |
| !! | CGGTGTTGTTTCCTCGACCT+TGG | - | chr8_3:65120336-65120355 | None:intergenic | 55.0% |
| !! | TTCTGAAGTGGGAACCTCGG+AGG | - | chr8_3:65120360-65120379 | None:intergenic | 55.0% |
| !! | GTGGTGGCTGGTTCTGAAGT+GGG | - | chr8_3:65120371-65120390 | None:intergenic | 55.0% |
| ! | ACTACTTCTTCGGTGGTGGC+TGG | - | chr8_3:65120383-65120402 | None:intergenic | 55.0% |
| AACTGAGGAAGCCAAGGCAG+AGG | + | chr8_3:65120457-65120476 | Msa1302540:CDS | 55.0% | |
| CAAGGCAGAGGTAGAGAACC+CGG | + | chr8_3:65120469-65120488 | Msa1302540:CDS | 55.0% | |
| !!! | GCTTCGACTTTTTCGGGTGC+CGG | - | chr8_3:65120560-65120579 | None:intergenic | 55.0% |
| !! | GGTGGTGGCTGGTTCTGAAG+TGG | - | chr8_3:65120372-65120391 | None:intergenic | 60.0% |
| CGGGTTCTCTACCTCTGCCT+TGG | - | chr8_3:65120471-65120490 | None:intergenic | 60.0% | |
| !! | GGTGGTGGCTGGTTCTGAAG+TGG | - | chr8_3:65120372-65120391 | None:intergenic | 60.0% |
| CGGGTTCTCTACCTCTGCCT+TGG | - | chr8_3:65120471-65120490 | None:intergenic | 60.0% | |
| GGAAACAACACCGGCCTCCG+AGG | + | chr8_3:65120343-65120362 | Msa1302540:CDS | 65.0% | |
| GAAGTGGGAACCTCGGAGGC+CGG | - | chr8_3:65120356-65120375 | None:intergenic | 65.0% | |
| GGAAACAACACCGGCCTCCG+AGG | + | chr8_3:65120343-65120362 | Msa1302540:CDS | 65.0% | |
| GAAGTGGGAACCTCGGAGGC+CGG | - | chr8_3:65120356-65120375 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 65119693 | 65120679 | 65119693 | ID=Msa1302540;Name=Msa1302540 |
| chr8_3 | mRNA | 65119693 | 65120679 | 65119693 | ID=Msa1302540-mRNA-1;Parent=Msa1302540;Name=Msa1302540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=87|1|0.5|1|1|1|2|0|138 |
| chr8_3 | exon | 65119693 | 65119794 | 65119693 | ID=Msa1302540-mRNA-1:exon:19719;Parent=Msa1302540-mRNA-1 |
| chr8_3 | exon | 65120278 | 65120679 | 65120278 | ID=Msa1302540-mRNA-1:exon:19720;Parent=Msa1302540-mRNA-1 |
| chr8_3 | five_prime_UTR | 65119693 | 65119779 | 65119693 | ID=Msa1302540-mRNA-1:five_prime_utr;Parent=Msa1302540-mRNA-1 |
| chr8_3 | CDS | 65119780 | 65119794 | 65119780 | ID=Msa1302540-mRNA-1:cds;Parent=Msa1302540-mRNA-1 |
| chr8_3 | CDS | 65120278 | 65120679 | 65120278 | ID=Msa1302540-mRNA-1:cds;Parent=Msa1302540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
