Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746090 | XP_003610522.1 | 92.143 | 140 | 10 | 1 | 1 | 139 | 1 | 140 | 1.58e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746090 | G7JKJ2 | 92.143 | 140 | 10 | 1 | 1 | 139 | 1 | 140 | 7.55e-37 | 132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0746090 | 0.820204 | 7.760000e-53 | -8.615850e-47 |
| Msa0016440 | Msa0746090 | 0.806196 | 9.251702e-50 | -8.615850e-47 |
| Msa0032130 | Msa0746090 | 0.817147 | 3.833349e-52 | -8.615850e-47 |
| Msa0032390 | Msa0746090 | 0.824140 | 9.485323e-54 | -8.615850e-47 |
| Msa0048950 | Msa0746090 | 0.816462 | 5.463219e-52 | -8.615850e-47 |
| Msa0057860 | Msa0746090 | 0.800983 | 1.115722e-48 | -8.615850e-47 |
| Msa0073270 | Msa0746090 | 0.807973 | 3.890207e-50 | -8.615850e-47 |
| Msa0102920 | Msa0746090 | 0.805924 | 1.055586e-49 | -8.615850e-47 |
| Msa0641030 | Msa0746090 | -0.819315 | 1.239020e-52 | -8.615850e-47 |
| Msa0679560 | Msa0746090 | -0.825751 | 3.950737e-54 | -8.615850e-47 |
| Msa0716700 | Msa0746090 | 0.804989 | 1.657357e-49 | -8.615850e-47 |
| Msa0746090 | Msa0791300 | 0.805021 | 1.632534e-49 | -8.615850e-47 |
| Msa0746090 | Msa0910830 | 0.804152 | 2.477245e-49 | -8.615850e-47 |
| Msa0746090 | Msa0957820 | -0.800584 | 1.345618e-48 | -8.615850e-47 |
| Msa0746090 | Msa0960090 | 0.801037 | 1.087661e-48 | -8.615850e-47 |
| Msa0746090 | Msa1130770 | 0.815998 | 6.934830e-52 | -8.615850e-47 |
| Msa0746090 | Msa1214960 | 0.803456 | 3.456813e-49 | -8.615850e-47 |
| Msa0746090 | Msa1253270 | 0.807723 | 4.397732e-50 | -8.615850e-47 |
| Msa0746090 | Msa1302540 | 0.930632 | 1.234631e-93 | -8.615850e-47 |
| Msa0746090 | Msa1380490 | 0.833227 | 6.020897e-56 | -8.615850e-47 |
| Msa0746090 | Msa1381330 | 0.807974 | 3.889245e-50 | -8.615850e-47 |
| Msa0746090 | Msa1398490 | 0.820364 | 7.131359e-53 | -8.615850e-47 |
| Msa0746090 | Msa1407670 | 0.833612 | 4.825042e-56 | -8.615850e-47 |
| Msa0746090 | Msa1417950 | 0.811180 | 7.962586e-51 | -8.615850e-47 |
| Msa0746090 | Msa1420020 | 0.800707 | 1.270242e-48 | -8.615850e-47 |
| Msa0746090 | Msa1421120 | 0.807725 | 4.393452e-50 | -8.615850e-47 |
| Msa0746090 | Msa1445250 | -0.803559 | 3.290992e-49 | -8.615850e-47 |
| Msa0746090 | Msa1447900 | 0.828482 | 8.772830e-55 | -8.615850e-47 |
| Msa0746090 | Msa1449770 | 0.831050 | 2.079590e-55 | -8.615850e-47 |
| Msa0746090 | Msa1459610 | 0.800423 | 1.451436e-48 | -8.615850e-47 |
| Msa0746090 | Msa1460970 | 0.808803 | 2.588749e-50 | -8.615850e-47 |
| Msa0147680 | Msa0746090 | 0.817504 | 3.186954e-52 | -8.615850e-47 |
| Msa0185690 | Msa0746090 | 0.825227 | 5.258713e-54 | -8.615850e-47 |
| Msa0212490 | Msa0746090 | 0.815322 | 9.809820e-52 | -8.615850e-47 |
| Msa0432260 | Msa0746090 | -0.801741 | 7.804673e-49 | -8.615850e-47 |
| Msa0436830 | Msa0746090 | -0.814434 | 1.543502e-51 | -8.615850e-47 |
| Msa0467250 | Msa0746090 | 0.820676 | 6.047704e-53 | -8.615850e-47 |
| Msa0252880 | Msa0746090 | 0.813387 | 2.626615e-51 | -8.615850e-47 |
| Msa0266380 | Msa0746090 | -0.813447 | 2.548128e-51 | -8.615850e-47 |
| Msa0298270 | Msa0746090 | 0.803319 | 3.689633e-49 | -8.615850e-47 |
| Msa0317300 | Msa0746090 | 0.804471 | 2.126250e-49 | -8.615850e-47 |
| Msa0329650 | Msa0746090 | 0.804224 | 2.393171e-49 | -8.615850e-47 |
| Msa0341860 | Msa0746090 | -0.820224 | 7.679519e-53 | -8.615850e-47 |
| Msa0491760 | Msa0746090 | 0.808040 | 3.764436e-50 | -8.615850e-47 |
| Msa0521100 | Msa0746090 | -0.804581 | 2.017229e-49 | -8.615850e-47 |
| Msa0528040 | Msa0746090 | 0.813890 | 2.035849e-51 | -8.615850e-47 |
| Msa0544930 | Msa0746090 | -0.816662 | 4.926866e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746090 | MtrunA17_Chr4g0075751 | 92.143 | 140 | 10 | 1 | 1 | 139 | 1 | 140 | 1.45e-40 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCACTGTTACTACTTCTT+CGG | 0.326738 | 5_1:+68089715 | None:intergenic |
| TTACCTCAACAGTGGCCATT+TGG | 0.390008 | 5_1:+68090327 | None:intergenic |
| GTGGTGGTTACTTCTTCAAC+TGG | 0.408262 | 5_1:+68089455 | None:intergenic |
| CGGGTTCTCTACCTCTGCCT+TGG | 0.417414 | 5_1:+68089637 | None:intergenic |
| TTCTTCAACTGGTGCTGCTA+TGG | 0.423717 | 5_1:+68089466 | None:intergenic |
| TGTGTACTCTCAGCTTCAAC+TGG | 0.435451 | 5_1:+68089674 | None:intergenic |
| GAAATATGAACTAGCAAGAA+AGG | 0.445512 | 5_1:+68090373 | None:intergenic |
| ACTACTTCTTCGGTGGTGGC+TGG | 0.451704 | 5_1:+68089725 | None:intergenic |
| TGTTACTACTTCTTCGGTGG+TGG | 0.470019 | 5_1:+68089721 | None:intergenic |
| AGAAACTACTGAAACAGAAC+CGG | 0.474732 | 5_1:-68089564 | Msa0746090:CDS |
| ATTCATCTTTCCATTCCAAA+TGG | 0.477645 | 5_1:-68090342 | Msa0746090:exon |
| CAAGGCAGAGGTAGAGAACC+CGG | 0.480116 | 5_1:-68089636 | Msa0746090:CDS |
| CGGTGTTGTTTCCTCGACCT+TGG | 0.487832 | 5_1:+68089772 | None:intergenic |
| CACTGTTACTACTTCTTCGG+TGG | 0.532727 | 5_1:+68089718 | None:intergenic |
| GGTGGTGGCTGGTTCTGAAG+TGG | 0.534204 | 5_1:+68089736 | None:intergenic |
| AGAGGAAGTATCAGCTGAAG+AGG | 0.536609 | 5_1:-68089591 | Msa0746090:CDS |
| ATTCCAAATGGCCACTGTTG+AGG | 0.536707 | 5_1:-68090330 | Msa0746090:intron |
| AACTGAGGAAGCCAAGGCAG+AGG | 0.538217 | 5_1:-68089648 | Msa0746090:CDS |
| GAAGTAGTAACAGTGGAGAA+AGG | 0.540973 | 5_1:-68089710 | Msa0746090:CDS |
| TCAACAGTGGCCATTTGGAA+TGG | 0.543349 | 5_1:+68090332 | None:intergenic |
| GTGGTGGCTGGTTCTGAAGT+GGG | 0.546159 | 5_1:+68089737 | None:intergenic |
| GAAGTGGGAACCTCGGAGGC+CGG | 0.549296 | 5_1:+68089752 | None:intergenic |
| AGAGGAAGTATCAACTGAAG+AGG | 0.587702 | 5_1:-68089519 | Msa0746090:CDS |
| TGGTTCTGAAGTGGGAACCT+CGG | 0.596316 | 5_1:+68089745 | None:intergenic |
| AGTTGAGGTAACCAAGGTCG+AGG | 0.604857 | 5_1:-68089783 | Msa0746090:CDS |
| GACAGAAAATGAAACAGTTG+AGG | 0.607247 | 5_1:-68089798 | Msa0746090:CDS |
| ACAAGTAACTGAGGAAGCCA+AGG | 0.616520 | 5_1:-68089654 | Msa0746090:CDS |
| TGAGAGTACACAAGTAACTG+AGG | 0.633074 | 5_1:-68089663 | Msa0746090:CDS |
| TGAAACAGTTGAGGTAACCA+AGG | 0.643241 | 5_1:-68089789 | Msa0746090:CDS |
| TTCTGAAGTGGGAACCTCGG+AGG | 0.645606 | 5_1:+68089748 | None:intergenic |
| GGAAACAACACCGGCCTCCG+AGG | 0.649162 | 5_1:-68089762 | Msa0746090:CDS |
| CACCGAAGAAGTAGTAACAG+TGG | 0.674611 | 5_1:-68089717 | Msa0746090:CDS |
| TCTTTGAATTACCTCAACAG+TGG | 0.681859 | 5_1:+68090319 | None:intergenic |
| CAAGGTCGAGGAAACAACAC+CGG | 0.700669 | 5_1:-68089771 | Msa0746090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTATTGATCTTTTT+TGG | + | chr5_1:68089804-68089823 | None:intergenic | 15.0% |
| !!! | AATTGATTATTGATCTTTTT+TGG | + | chr5_1:68089804-68089823 | None:intergenic | 15.0% |
| !! | AAACAAAAATATTAGTCCAA+TGG | - | chr5_1:68089724-68089743 | Msa0746090:CDS | 20.0% |
| !!! | ATTTGTTGTTTATAATCCAT+TGG | + | chr5_1:68089743-68089762 | None:intergenic | 20.0% |
| !! | TGGATTATGAAAAATAAACA+CGG | + | chr5_1:68089784-68089803 | None:intergenic | 20.0% |
| !! | AAACAAAAATATTAGTCCAA+TGG | - | chr5_1:68089724-68089743 | Msa0746090:CDS | 20.0% |
| !!! | ATTTGTTGTTTATAATCCAT+TGG | + | chr5_1:68089743-68089762 | None:intergenic | 20.0% |
| !! | TGGATTATGAAAAATAAACA+CGG | + | chr5_1:68089784-68089803 | None:intergenic | 20.0% |
| !!! | AATATTTTTGTTTGATCCAC+TGG | + | chr5_1:68089717-68089736 | None:intergenic | 25.0% |
| ! | GATTATGAAAAATAAACACG+GGG | + | chr5_1:68089782-68089801 | None:intergenic | 25.0% |
| ! | GGATTATGAAAAATAAACAC+GGG | + | chr5_1:68089783-68089802 | None:intergenic | 25.0% |
| !!! | AATATTTTTGTTTGATCCAC+TGG | + | chr5_1:68089717-68089736 | None:intergenic | 25.0% |
| ! | GATTATGAAAAATAAACACG+GGG | + | chr5_1:68089782-68089801 | None:intergenic | 25.0% |
| ! | GGATTATGAAAAATAAACAC+GGG | + | chr5_1:68089783-68089802 | None:intergenic | 25.0% |
| GAAATATGAACTAGCAAGAA+AGG | + | chr5_1:68089485-68089504 | None:intergenic | 30.0% | |
| ATTCATCTTTCCATTCCAAA+TGG | - | chr5_1:68089513-68089532 | Msa0746090:CDS | 30.0% | |
| CTTGATGTTACAAATTCACA+CGG | - | chr5_1:68089685-68089704 | Msa0746090:CDS | 30.0% | |
| ATATGACCAAGTAACTCATA+GGG | + | chr5_1:68089957-68089976 | None:intergenic | 30.0% | |
| TATATGACCAAGTAACTCAT+AGG | + | chr5_1:68089958-68089977 | None:intergenic | 30.0% | |
| !! | TCTTTCACTTCAACTTTTTC+AGG | + | chr5_1:68090247-68090266 | None:intergenic | 30.0% |
| TGAAAAAGTTGAAGTGAAAG+AGG | - | chr5_1:68090246-68090265 | Msa0746090:intron | 30.0% | |
| GAAATATGAACTAGCAAGAA+AGG | + | chr5_1:68089485-68089504 | None:intergenic | 30.0% | |
| ATTCATCTTTCCATTCCAAA+TGG | - | chr5_1:68089513-68089532 | Msa0746090:CDS | 30.0% | |
| CTTGATGTTACAAATTCACA+CGG | - | chr5_1:68089685-68089704 | Msa0746090:CDS | 30.0% | |
| ATATGACCAAGTAACTCATA+GGG | + | chr5_1:68089957-68089976 | None:intergenic | 30.0% | |
| TATATGACCAAGTAACTCAT+AGG | + | chr5_1:68089958-68089977 | None:intergenic | 30.0% | |
| !! | TCTTTCACTTCAACTTTTTC+AGG | + | chr5_1:68090247-68090266 | None:intergenic | 30.0% |
| TGAAAAAGTTGAAGTGAAAG+AGG | - | chr5_1:68090246-68090265 | Msa0746090:intron | 30.0% | |
| TCTTTGAATTACCTCAACAG+TGG | + | chr5_1:68089539-68089558 | None:intergenic | 35.0% | |
| CATAACAACATGTTGAGCAT+TGG | - | chr5_1:68089980-68089999 | Msa0746090:intron | 35.0% | |
| ! | GCATTGGTGGTTAATGAAAA+TGG | - | chr5_1:68089996-68090015 | Msa0746090:intron | 35.0% |
| TTAATGAAAATGGATCCTGC+AGG | - | chr5_1:68090006-68090025 | Msa0746090:intron | 35.0% | |
| ! | TCATTTTCTGTCACAGTTGT+TGG | + | chr5_1:68090049-68090068 | None:intergenic | 35.0% |
| GACAGAAAATGAAACAGTTG+AGG | - | chr5_1:68090057-68090076 | Msa0746090:intron | 35.0% | |
| !!! | ACTTCAACTTTTTCAGGTTC+CGG | + | chr5_1:68090241-68090260 | None:intergenic | 35.0% |
| AGAAACTACTGAAACAGAAC+CGG | - | chr5_1:68090291-68090310 | Msa0746090:intron | 35.0% | |
| !! | TCTTTTGCTTCGACTTTTTC+GGG | + | chr5_1:68090319-68090338 | None:intergenic | 35.0% |
| ! | CTCTTTTGCTTCGACTTTTT+CGG | + | chr5_1:68090320-68090339 | None:intergenic | 35.0% |
| TCTTTGAATTACCTCAACAG+TGG | + | chr5_1:68089539-68089558 | None:intergenic | 35.0% | |
| CATAACAACATGTTGAGCAT+TGG | - | chr5_1:68089980-68089999 | Msa0746090:intron | 35.0% | |
| ! | GCATTGGTGGTTAATGAAAA+TGG | - | chr5_1:68089996-68090015 | Msa0746090:intron | 35.0% |
| TTAATGAAAATGGATCCTGC+AGG | - | chr5_1:68090006-68090025 | Msa0746090:intron | 35.0% | |
| ! | TCATTTTCTGTCACAGTTGT+TGG | + | chr5_1:68090049-68090068 | None:intergenic | 35.0% |
| GACAGAAAATGAAACAGTTG+AGG | - | chr5_1:68090057-68090076 | Msa0746090:intron | 35.0% | |
| !!! | ACTTCAACTTTTTCAGGTTC+CGG | + | chr5_1:68090241-68090260 | None:intergenic | 35.0% |
| AGAAACTACTGAAACAGAAC+CGG | - | chr5_1:68090291-68090310 | Msa0746090:intron | 35.0% | |
| !! | TCTTTTGCTTCGACTTTTTC+GGG | + | chr5_1:68090319-68090338 | None:intergenic | 35.0% |
| ! | CTCTTTTGCTTCGACTTTTT+CGG | + | chr5_1:68090320-68090339 | None:intergenic | 35.0% |
| CATGTTCCCTATGAGTTACT+TGG | - | chr5_1:68089948-68089967 | Msa0746090:intron | 40.0% | |
| !! | AACAACATGTTGAGCATTGG+TGG | - | chr5_1:68089983-68090002 | Msa0746090:intron | 40.0% |
| TGAAACAGTTGAGGTAACCA+AGG | - | chr5_1:68090066-68090085 | Msa0746090:intron | 40.0% | |
| CTCCACTGTTACTACTTCTT+CGG | + | chr5_1:68090143-68090162 | None:intergenic | 40.0% | |
| GAAGTAGTAACAGTGGAGAA+AGG | - | chr5_1:68090145-68090164 | Msa0746090:intron | 40.0% | |
| ! | TGAGAGTACACAAGTAACTG+AGG | - | chr5_1:68090192-68090211 | Msa0746090:intron | 40.0% |
| !!! | CTTCAACTTTTTCAGGTTCC+GGG | + | chr5_1:68090240-68090259 | None:intergenic | 40.0% |
| CGAAAAAGTCGAAGCAAAAG+AGG | - | chr5_1:68090318-68090337 | Msa0746090:intron | 40.0% | |
| !! | AGAGGAAGTATCAACTGAAG+AGG | - | chr5_1:68090336-68090355 | Msa0746090:exon | 40.0% |
| CATGTTCCCTATGAGTTACT+TGG | - | chr5_1:68089948-68089967 | Msa0746090:intron | 40.0% | |
| !! | AACAACATGTTGAGCATTGG+TGG | - | chr5_1:68089983-68090002 | Msa0746090:intron | 40.0% |
| TGAAACAGTTGAGGTAACCA+AGG | - | chr5_1:68090066-68090085 | Msa0746090:intron | 40.0% | |
| CTCCACTGTTACTACTTCTT+CGG | + | chr5_1:68090143-68090162 | None:intergenic | 40.0% | |
| GAAGTAGTAACAGTGGAGAA+AGG | - | chr5_1:68090145-68090164 | Msa0746090:intron | 40.0% | |
| ! | TGAGAGTACACAAGTAACTG+AGG | - | chr5_1:68090192-68090211 | Msa0746090:intron | 40.0% |
| !!! | CTTCAACTTTTTCAGGTTCC+GGG | + | chr5_1:68090240-68090259 | None:intergenic | 40.0% |
| CGAAAAAGTCGAAGCAAAAG+AGG | - | chr5_1:68090318-68090337 | Msa0746090:intron | 40.0% | |
| !! | AGAGGAAGTATCAACTGAAG+AGG | - | chr5_1:68090336-68090355 | Msa0746090:exon | 40.0% |
| TCAACAGTGGCCATTTGGAA+TGG | + | chr5_1:68089526-68089545 | None:intergenic | 45.0% | |
| ATTCCAAATGGCCACTGTTG+AGG | - | chr5_1:68089525-68089544 | Msa0746090:CDS | 45.0% | |
| TTACCTCAACAGTGGCCATT+TGG | + | chr5_1:68089531-68089550 | None:intergenic | 45.0% | |
| ! | ATTCACACGGCATTTTCCAG+TGG | - | chr5_1:68089698-68089717 | Msa0746090:CDS | 45.0% |
| ! | TTTGCTGTGTTTCAACCTGC+AGG | + | chr5_1:68090024-68090043 | None:intergenic | 45.0% |
| TGTTACTACTTCTTCGGTGG+TGG | + | chr5_1:68090137-68090156 | None:intergenic | 45.0% | |
| CACTGTTACTACTTCTTCGG+TGG | + | chr5_1:68090140-68090159 | None:intergenic | 45.0% | |
| CACCGAAGAAGTAGTAACAG+TGG | - | chr5_1:68090138-68090157 | Msa0746090:intron | 45.0% | |
| TGTGTACTCTCAGCTTCAAC+TGG | + | chr5_1:68090184-68090203 | None:intergenic | 45.0% | |
| ACAAGTAACTGAGGAAGCCA+AGG | - | chr5_1:68090201-68090220 | Msa0746090:intron | 45.0% | |
| !! | AGAGGAAGTATCAGCTGAAG+AGG | - | chr5_1:68090264-68090283 | Msa0746090:intron | 45.0% |
| !! | TTCTTCAACTGGTGCTGCTA+TGG | + | chr5_1:68090392-68090411 | None:intergenic | 45.0% |
| GTGGTGGTTACTTCTTCAAC+TGG | + | chr5_1:68090403-68090422 | None:intergenic | 45.0% | |
| TCAACAGTGGCCATTTGGAA+TGG | + | chr5_1:68089526-68089545 | None:intergenic | 45.0% | |
| ATTCCAAATGGCCACTGTTG+AGG | - | chr5_1:68089525-68089544 | Msa0746090:CDS | 45.0% | |
| TTACCTCAACAGTGGCCATT+TGG | + | chr5_1:68089531-68089550 | None:intergenic | 45.0% | |
| ! | ATTCACACGGCATTTTCCAG+TGG | - | chr5_1:68089698-68089717 | Msa0746090:CDS | 45.0% |
| ! | TTTGCTGTGTTTCAACCTGC+AGG | + | chr5_1:68090024-68090043 | None:intergenic | 45.0% |
| TGTTACTACTTCTTCGGTGG+TGG | + | chr5_1:68090137-68090156 | None:intergenic | 45.0% | |
| CACTGTTACTACTTCTTCGG+TGG | + | chr5_1:68090140-68090159 | None:intergenic | 45.0% | |
| CACCGAAGAAGTAGTAACAG+TGG | - | chr5_1:68090138-68090157 | Msa0746090:intron | 45.0% | |
| TGTGTACTCTCAGCTTCAAC+TGG | + | chr5_1:68090184-68090203 | None:intergenic | 45.0% | |
| ACAAGTAACTGAGGAAGCCA+AGG | - | chr5_1:68090201-68090220 | Msa0746090:intron | 45.0% | |
| !! | AGAGGAAGTATCAGCTGAAG+AGG | - | chr5_1:68090264-68090283 | Msa0746090:intron | 45.0% |
| !! | TTCTTCAACTGGTGCTGCTA+TGG | + | chr5_1:68090392-68090411 | None:intergenic | 45.0% |
| GTGGTGGTTACTTCTTCAAC+TGG | + | chr5_1:68090403-68090422 | None:intergenic | 45.0% | |
| AGTTGAGGTAACCAAGGTCG+AGG | - | chr5_1:68090072-68090091 | Msa0746090:intron | 50.0% | |
| CAAGGTCGAGGAAACAACAC+CGG | - | chr5_1:68090084-68090103 | Msa0746090:intron | 50.0% | |
| !! | TGGTTCTGAAGTGGGAACCT+CGG | + | chr5_1:68090113-68090132 | None:intergenic | 50.0% |
| AGTTGAGGTAACCAAGGTCG+AGG | - | chr5_1:68090072-68090091 | Msa0746090:intron | 50.0% | |
| CAAGGTCGAGGAAACAACAC+CGG | - | chr5_1:68090084-68090103 | Msa0746090:intron | 50.0% | |
| !! | TGGTTCTGAAGTGGGAACCT+CGG | + | chr5_1:68090113-68090132 | None:intergenic | 50.0% |
| !! | CGGTGTTGTTTCCTCGACCT+TGG | + | chr5_1:68090086-68090105 | None:intergenic | 55.0% |
| !! | TTCTGAAGTGGGAACCTCGG+AGG | + | chr5_1:68090110-68090129 | None:intergenic | 55.0% |
| !! | GTGGTGGCTGGTTCTGAAGT+GGG | + | chr5_1:68090121-68090140 | None:intergenic | 55.0% |
| ! | ACTACTTCTTCGGTGGTGGC+TGG | + | chr5_1:68090133-68090152 | None:intergenic | 55.0% |
| AACTGAGGAAGCCAAGGCAG+AGG | - | chr5_1:68090207-68090226 | Msa0746090:intron | 55.0% | |
| CAAGGCAGAGGTAGAGAACC+CGG | - | chr5_1:68090219-68090238 | Msa0746090:intron | 55.0% | |
| !!! | GCTTCGACTTTTTCGGGTGC+CGG | + | chr5_1:68090313-68090332 | None:intergenic | 55.0% |
| !! | CGGTGTTGTTTCCTCGACCT+TGG | + | chr5_1:68090086-68090105 | None:intergenic | 55.0% |
| !! | TTCTGAAGTGGGAACCTCGG+AGG | + | chr5_1:68090110-68090129 | None:intergenic | 55.0% |
| !! | GTGGTGGCTGGTTCTGAAGT+GGG | + | chr5_1:68090121-68090140 | None:intergenic | 55.0% |
| ! | ACTACTTCTTCGGTGGTGGC+TGG | + | chr5_1:68090133-68090152 | None:intergenic | 55.0% |
| AACTGAGGAAGCCAAGGCAG+AGG | - | chr5_1:68090207-68090226 | Msa0746090:intron | 55.0% | |
| CAAGGCAGAGGTAGAGAACC+CGG | - | chr5_1:68090219-68090238 | Msa0746090:intron | 55.0% | |
| !!! | GCTTCGACTTTTTCGGGTGC+CGG | + | chr5_1:68090313-68090332 | None:intergenic | 55.0% |
| !! | GGTGGTGGCTGGTTCTGAAG+TGG | + | chr5_1:68090122-68090141 | None:intergenic | 60.0% |
| CGGGTTCTCTACCTCTGCCT+TGG | + | chr5_1:68090221-68090240 | None:intergenic | 60.0% | |
| !! | GGTGGTGGCTGGTTCTGAAG+TGG | + | chr5_1:68090122-68090141 | None:intergenic | 60.0% |
| CGGGTTCTCTACCTCTGCCT+TGG | + | chr5_1:68090221-68090240 | None:intergenic | 60.0% | |
| GGAAACAACACCGGCCTCCG+AGG | - | chr5_1:68090093-68090112 | Msa0746090:intron | 65.0% | |
| GAAGTGGGAACCTCGGAGGC+CGG | + | chr5_1:68090106-68090125 | None:intergenic | 65.0% | |
| GGAAACAACACCGGCCTCCG+AGG | - | chr5_1:68090093-68090112 | Msa0746090:intron | 65.0% | |
| GAAGTGGGAACCTCGGAGGC+CGG | + | chr5_1:68090106-68090125 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 68089445 | 68090432 | 68089445 | ID=Msa0746090;Name=Msa0746090 |
| chr5_1 | mRNA | 68089445 | 68090432 | 68089445 | ID=Msa0746090-mRNA-1;Parent=Msa0746090;Name=Msa0746090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=87|1|0.5|1|1|1|2|0|139 |
| chr5_1 | exon | 68089445 | 68089849 | 68089445 | ID=Msa0746090-mRNA-1:exon:20301;Parent=Msa0746090-mRNA-1 |
| chr5_1 | exon | 68090331 | 68090432 | 68090331 | ID=Msa0746090-mRNA-1:exon:20300;Parent=Msa0746090-mRNA-1 |
| chr5_1 | five_prime_UTR | 68090346 | 68090432 | 68090346 | ID=Msa0746090-mRNA-1:five_prime_utr;Parent=Msa0746090-mRNA-1 |
| chr5_1 | CDS | 68090331 | 68090345 | 68090331 | ID=Msa0746090-mRNA-1:cds;Parent=Msa0746090-mRNA-1 |
| chr5_1 | CDS | 68089445 | 68089849 | 68089445 | ID=Msa0746090-mRNA-1:cds;Parent=Msa0746090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
