Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467250 | XP_024633668.1 | 91.848 | 184 | 15 | 0 | 1 | 184 | 2 | 185 | 1.43e-97 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467250 | sp|F4I082|LTPG6_ARATH | 43.820 | 178 | 94 | 3 | 7 | 182 | 10 | 183 | 8.36e-47 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467250 | A0A396IUN5 | 91.848 | 184 | 15 | 0 | 1 | 184 | 2 | 185 | 6.82e-98 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0467250 | 0.805636 | 1.212920e-49 | -8.615850e-47 |
| Msa0006840 | Msa0467250 | 0.829317 | 5.507718e-55 | -8.615850e-47 |
| Msa0029730 | Msa0467250 | 0.813327 | 2.707070e-51 | -8.615850e-47 |
| Msa0032130 | Msa0467250 | 0.821463 | 3.984097e-53 | -8.615850e-47 |
| Msa0032390 | Msa0467250 | 0.832283 | 1.032929e-55 | -8.615850e-47 |
| Msa0045620 | Msa0467250 | 0.835592 | 1.534505e-56 | -8.615850e-47 |
| Msa0050530 | Msa0467250 | 0.876027 | 1.934740e-68 | -8.615850e-47 |
| Msa0073270 | Msa0467250 | 0.809470 | 1.862515e-50 | -8.615850e-47 |
| Msa0089540 | Msa0467250 | 0.815669 | 8.210294e-52 | -8.615850e-47 |
| Msa0100600 | Msa0467250 | 0.834411 | 3.044239e-56 | -8.615850e-47 |
| Msa0100890 | Msa0467250 | 0.853781 | 1.904524e-61 | -8.615850e-47 |
| Msa0136690 | Msa0467250 | 0.805943 | 1.045461e-49 | -8.615850e-47 |
| Msa0147680 | Msa0467250 | 0.811992 | 5.304924e-51 | -8.615850e-47 |
| Msa0158760 | Msa0467250 | 0.807385 | 5.185959e-50 | -8.615850e-47 |
| Msa0168380 | Msa0467250 | 0.803196 | 3.912714e-49 | -8.615850e-47 |
| Msa0169710 | Msa0467250 | 0.837840 | 4.098135e-57 | -8.615850e-47 |
| Msa0173250 | Msa0467250 | 0.802832 | 4.652808e-49 | -8.615850e-47 |
| Msa0185690 | Msa0467250 | 0.822136 | 2.784395e-53 | -8.615850e-47 |
| Msa0192050 | Msa0467250 | 0.802865 | 4.580905e-49 | -8.615850e-47 |
| Msa0195030 | Msa0467250 | 0.804200 | 2.421613e-49 | -8.615850e-47 |
| Msa0197920 | Msa0467250 | 0.842761 | 2.121890e-58 | -8.615850e-47 |
| Msa0206370 | Msa0467250 | 0.821575 | 3.753661e-53 | -8.615850e-47 |
| Msa0219840 | Msa0467250 | 0.821472 | 3.964260e-53 | -8.615850e-47 |
| Msa0235080 | Msa0467250 | 0.832856 | 7.446193e-56 | -8.615850e-47 |
| Msa0237180 | Msa0467250 | 0.826516 | 2.598772e-54 | -8.615850e-47 |
| Msa0372100 | Msa0467250 | 0.889669 | 1.968866e-73 | -8.615850e-47 |
| Msa0380590 | Msa0467250 | 0.812978 | 3.229961e-51 | -8.615850e-47 |
| Msa0387890 | Msa0467250 | 0.944297 | 2.525371e-103 | -8.615850e-47 |
| Msa0388250 | Msa0467250 | 0.814606 | 1.414442e-51 | -8.615850e-47 |
| Msa0416210 | Msa0467250 | 0.830822 | 2.365081e-55 | -8.615850e-47 |
| Msa0421290 | Msa0467250 | 0.913896 | 3.611713e-84 | -8.615850e-47 |
| Msa0422690 | Msa0467250 | 0.806830 | 6.797908e-50 | -8.615850e-47 |
| Msa0422900 | Msa0467250 | 0.812300 | 4.543446e-51 | -8.615850e-47 |
| Msa0432260 | Msa0467250 | -0.826034 | 3.384168e-54 | -8.615850e-47 |
| Msa0433630 | Msa0467250 | 0.802944 | 4.410890e-49 | -8.615850e-47 |
| Msa0467250 | Msa0469430 | 0.814223 | 1.718343e-51 | -8.615850e-47 |
| Msa0467250 | Msa0476730 | -0.832861 | 7.424876e-56 | -8.615850e-47 |
| Msa0467250 | Msa0500420 | 0.816186 | 6.294765e-52 | -8.615850e-47 |
| Msa0467250 | Msa0515110 | 0.814528 | 1.471865e-51 | -8.615850e-47 |
| Msa0467250 | Msa0527560 | 0.850932 | 1.232823e-60 | -8.615850e-47 |
| Msa0467250 | Msa0528040 | 0.810473 | 1.132858e-50 | -8.615850e-47 |
| Msa0467250 | Msa0530660 | 0.823901 | 1.079279e-53 | -8.615850e-47 |
| Msa0467250 | Msa0540160 | -0.821158 | 4.684891e-53 | -8.615850e-47 |
| Msa0467250 | Msa0566460 | 0.853653 | 2.072741e-61 | -8.615850e-47 |
| Msa0467250 | Msa0566930 | 0.800676 | 1.288775e-48 | -8.615850e-47 |
| Msa0467250 | Msa0575950 | 0.828454 | 8.909891e-55 | -8.615850e-47 |
| Msa0467250 | Msa0576330 | 0.823370 | 1.436341e-53 | -8.615850e-47 |
| Msa0467250 | Msa0587180 | 0.838877 | 2.215176e-57 | -8.615850e-47 |
| Msa0467250 | Msa0605520 | 0.837005 | 6.707123e-57 | -8.615850e-47 |
| Msa0467250 | Msa0612880 | -0.818264 | 2.146599e-52 | -8.615850e-47 |
| Msa0467250 | Msa0623310 | 0.839978 | 1.146880e-57 | -8.615850e-47 |
| Msa0467250 | Msa0626980 | 0.825461 | 4.629631e-54 | -8.615850e-47 |
| Msa0467250 | Msa0627360 | 0.818498 | 1.899395e-52 | -8.615850e-47 |
| Msa0467250 | Msa0658120 | 0.840985 | 6.251860e-58 | -8.615850e-47 |
| Msa0467250 | Msa0673940 | 0.845539 | 3.813906e-59 | -8.615850e-47 |
| Msa0467250 | Msa0687370 | 0.832161 | 1.106974e-55 | -8.615850e-47 |
| Msa0467250 | Msa0702970 | 0.846638 | 1.915358e-59 | -8.615850e-47 |
| Msa0467250 | Msa0706690 | 0.852334 | 4.943662e-61 | -8.615850e-47 |
| Msa0467250 | Msa0708020 | 0.807213 | 5.640832e-50 | -8.615850e-47 |
| Msa0467250 | Msa0716700 | 0.842317 | 2.784585e-58 | -8.615850e-47 |
| Msa0467250 | Msa0746090 | 0.820676 | 6.047704e-53 | -8.615850e-47 |
| Msa0467250 | Msa0751720 | 0.834598 | 2.731939e-56 | -8.615850e-47 |
| Msa0467250 | Msa0761830 | 0.811116 | 8.223735e-51 | -8.615850e-47 |
| Msa0467250 | Msa0772420 | 0.842155 | 3.073110e-58 | -8.615850e-47 |
| Msa0467250 | Msa0831820 | 0.816765 | 4.672042e-52 | -8.615850e-47 |
| Msa0467250 | Msa0846900 | 0.830588 | 2.698120e-55 | -8.615850e-47 |
| Msa0467250 | Msa0876630 | 0.817102 | 3.923603e-52 | -8.615850e-47 |
| Msa0467250 | Msa0913520 | 0.825840 | 3.764706e-54 | -8.615850e-47 |
| Msa0467250 | Msa0921340 | 0.826707 | 2.340781e-54 | -8.615850e-47 |
| Msa0467250 | Msa0925330 | 0.821136 | 4.739308e-53 | -8.615850e-47 |
| Msa0467250 | Msa0926760 | 0.815645 | 8.315480e-52 | -8.615850e-47 |
| Msa0467250 | Msa0929900 | 0.800660 | 1.298305e-48 | -8.615850e-47 |
| Msa0467250 | Msa0959850 | 0.804139 | 2.493033e-49 | -8.615850e-47 |
| Msa0467250 | Msa0966120 | 0.821908 | 3.144254e-53 | -8.615850e-47 |
| Msa0467250 | Msa0987670 | 0.853692 | 2.020109e-61 | -8.615850e-47 |
| Msa0467250 | Msa1001620 | 0.816184 | 6.301894e-52 | -8.615850e-47 |
| Msa0467250 | Msa1021560 | 0.828728 | 7.650495e-55 | -8.615850e-47 |
| Msa0467250 | Msa1025220 | 0.805452 | 1.325802e-49 | -8.615850e-47 |
| Msa0467250 | Msa1026710 | 0.824235 | 9.008466e-54 | -8.615850e-47 |
| Msa0467250 | Msa1060300 | 0.826602 | 2.479256e-54 | -8.615850e-47 |
| Msa0467250 | Msa1083630 | 0.801585 | 8.402282e-49 | -8.615850e-47 |
| Msa0467250 | Msa1085560 | 0.813013 | 3.172505e-51 | -8.615850e-47 |
| Msa0467250 | Msa1085680 | 0.827023 | 1.966391e-54 | -8.615850e-47 |
| Msa0467250 | Msa1088260 | 0.938852 | 3.388416e-99 | -8.615850e-47 |
| Msa0467250 | Msa1105540 | 0.823998 | 1.024156e-53 | -8.615850e-47 |
| Msa0467250 | Msa1105580 | 0.818592 | 1.809170e-52 | -8.615850e-47 |
| Msa0467250 | Msa1126690 | 0.802237 | 6.171835e-49 | -8.615850e-47 |
| Msa0467250 | Msa1128620 | 0.802907 | 4.489876e-49 | -8.615850e-47 |
| Msa0467250 | Msa1130770 | 0.818601 | 1.799845e-52 | -8.615850e-47 |
| Msa0467250 | Msa1136890 | -0.817081 | 3.966588e-52 | -8.615850e-47 |
| Msa0467250 | Msa1136970 | -0.811662 | 6.258171e-51 | -8.615850e-47 |
| Msa0467250 | Msa1148930 | 0.830386 | 3.024459e-55 | -8.615850e-47 |
| Msa0467250 | Msa1186260 | 0.846399 | 2.225763e-59 | -8.615850e-47 |
| Msa0467250 | Msa1200360 | 0.829380 | 5.317713e-55 | -8.615850e-47 |
| Msa0467250 | Msa1217890 | 0.800038 | 1.738139e-48 | -8.615850e-47 |
| Msa0467250 | Msa1220580 | 0.800152 | 1.647814e-48 | -8.615850e-47 |
| Msa0467250 | Msa1220720 | 0.811789 | 5.873736e-51 | -8.615850e-47 |
| Msa0467250 | Msa1227760 | 0.802324 | 5.922737e-49 | -8.615850e-47 |
| Msa0467250 | Msa1231440 | 0.800682 | 1.285418e-48 | -8.615850e-47 |
| Msa0467250 | Msa1250470 | 0.808557 | 2.920747e-50 | -8.615850e-47 |
| Msa0467250 | Msa1253270 | 0.828932 | 6.828289e-55 | -8.615850e-47 |
| Msa0467250 | Msa1253300 | 0.830004 | 3.748404e-55 | -8.615850e-47 |
| Msa0467250 | Msa1265570 | 0.810150 | 1.329619e-50 | -8.615850e-47 |
| Msa0467250 | Msa1297470 | 0.806816 | 6.845395e-50 | -8.615850e-47 |
| Msa0467250 | Msa1302540 | 0.810525 | 1.104015e-50 | -8.615850e-47 |
| Msa0467250 | Msa1334560 | 0.810605 | 1.060603e-50 | -8.615850e-47 |
| Msa0467250 | Msa1334670 | 0.807743 | 4.353435e-50 | -8.615850e-47 |
| Msa0467250 | Msa1343460 | 0.839670 | 1.379394e-57 | -8.615850e-47 |
| Msa0467250 | Msa1347610 | 0.822620 | 2.148501e-53 | -8.615850e-47 |
| Msa0467250 | Msa1362590 | 0.825319 | 5.002901e-54 | -8.615850e-47 |
| Msa0467250 | Msa1365230 | 0.808650 | 2.790234e-50 | -8.615850e-47 |
| Msa0467250 | Msa1368170 | 0.864395 | 1.254438e-64 | -8.615850e-47 |
| Msa0467250 | Msa1371270 | 0.837219 | 5.914982e-57 | -8.615850e-47 |
| Msa0467250 | Msa1371800 | 0.826809 | 2.213106e-54 | -8.615850e-47 |
| Msa0467250 | Msa1372030 | 0.813789 | 2.142183e-51 | -8.615850e-47 |
| Msa0467250 | Msa1376310 | 0.830333 | 3.115094e-55 | -8.615850e-47 |
| Msa0467250 | Msa1377140 | 0.807927 | 3.979589e-50 | -8.615850e-47 |
| Msa0467250 | Msa1385570 | 0.869887 | 2.210423e-66 | -8.615850e-47 |
| Msa0467250 | Msa1395050 | 0.838278 | 3.163046e-57 | -8.615850e-47 |
| Msa0467250 | Msa1398490 | 0.822287 | 2.568459e-53 | -8.615850e-47 |
| Msa0467250 | Msa1420830 | 0.804842 | 1.779404e-49 | -8.615850e-47 |
| Msa0467250 | Msa1430250 | 0.850236 | 1.935007e-60 | -8.615850e-47 |
| Msa0467250 | Msa1431520 | 0.807283 | 5.453018e-50 | -8.615850e-47 |
| Msa0467250 | Msa1434700 | 0.814050 | 1.877112e-51 | -8.615850e-47 |
| Msa0467250 | Msa1444660 | 0.814389 | 1.579614e-51 | -8.615850e-47 |
| Msa0467250 | Msa1447900 | 0.827326 | 1.664008e-54 | -8.615850e-47 |
| Msa0467250 | Msa1449770 | 0.800262 | 1.564830e-48 | -8.615850e-47 |
| Msa0467250 | Msa1453030 | 0.808435 | 3.101971e-50 | -8.615850e-47 |
| Msa0260980 | Msa0467250 | 0.831685 | 1.451245e-55 | -8.615850e-47 |
| Msa0273360 | Msa0467250 | 0.804053 | 2.598089e-49 | -8.615850e-47 |
| Msa0274940 | Msa0467250 | 0.809955 | 1.464682e-50 | -8.615850e-47 |
| Msa0277320 | Msa0467250 | 0.831439 | 1.668065e-55 | -8.615850e-47 |
| Msa0313060 | Msa0467250 | 0.801050 | 1.081230e-48 | -8.615850e-47 |
| Msa0315660 | Msa0467250 | 0.821793 | 3.341651e-53 | -8.615850e-47 |
| Msa0317300 | Msa0467250 | 0.837587 | 4.761398e-57 | -8.615850e-47 |
| Msa0328870 | Msa0467250 | 0.817512 | 3.173101e-52 | -8.615850e-47 |
| Msa0336430 | Msa0467250 | 0.823141 | 1.625147e-53 | -8.615850e-47 |
| Msa0336460 | Msa0467250 | 0.828131 | 1.066303e-54 | -8.615850e-47 |
| Msa0336520 | Msa0467250 | 0.843522 | 1.331017e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467250 | MtrunA17_Chr3g0121381 | 91.848 | 184 | 15 | 0 | 1 | 184 | 2 | 185 | 1.31e-101 | 290 |
| Msa0467250 | MtrunA17_Chr8g0378461 | 51.934 | 181 | 83 | 2 | 8 | 184 | 14 | 194 | 9.54e-71 | 213 |
| Msa0467250 | MtrunA17_Chr8g0356191 | 40.513 | 195 | 104 | 5 | 1 | 183 | 1 | 195 | 5.07e-40 | 134 |
| Msa0467250 | MtrunA17_Chr7g0219391 | 48.515 | 101 | 52 | 0 | 7 | 107 | 12 | 112 | 8.49e-31 | 109 |
| Msa0467250 | MtrunA17_Chr1g0205181 | 32.593 | 135 | 81 | 3 | 11 | 145 | 15 | 139 | 1.11e-12 | 62.8 |
| Msa0467250 | MtrunA17_Chr1g0205201 | 36.667 | 90 | 55 | 2 | 11 | 100 | 10 | 97 | 2.15e-12 | 62.0 |
| Msa0467250 | MtrunA17_Chr1g0205191 | 39.189 | 74 | 42 | 2 | 27 | 100 | 25 | 95 | 9.74e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467250 | AT1G55260.1 | 43.820 | 178 | 94 | 3 | 7 | 182 | 53 | 226 | 1.76e-47 | 155 |
| Msa0467250 | AT1G55260.2 | 43.820 | 178 | 91 | 4 | 7 | 182 | 53 | 223 | 4.53e-47 | 154 |
| Msa0467250 | AT2G44300.1 | 39.796 | 196 | 98 | 3 | 6 | 184 | 11 | 203 | 3.14e-43 | 143 |
| Msa0467250 | AT2G44290.1 | 39.086 | 197 | 97 | 3 | 8 | 184 | 11 | 204 | 3.44e-43 | 143 |
| Msa0467250 | AT3G58550.1 | 41.844 | 141 | 75 | 3 | 9 | 146 | 21 | 157 | 8.39e-34 | 118 |
| Msa0467250 | AT1G73890.1 | 38.462 | 78 | 48 | 0 | 30 | 107 | 30 | 107 | 1.45e-14 | 68.9 |
| Msa0467250 | AT1G03103.1 | 31.915 | 94 | 64 | 0 | 7 | 100 | 2 | 95 | 2.04e-14 | 68.2 |
| Msa0467250 | AT5G09370.3 | 37.600 | 125 | 66 | 5 | 23 | 139 | 21 | 141 | 2.07e-14 | 67.8 |
| Msa0467250 | AT2G48130.2 | 30.435 | 138 | 94 | 2 | 1 | 137 | 1 | 137 | 2.43e-14 | 68.2 |
| Msa0467250 | AT2G48130.6 | 30.435 | 138 | 94 | 2 | 1 | 137 | 1 | 137 | 2.43e-14 | 68.2 |
| Msa0467250 | AT2G48130.4 | 30.435 | 138 | 94 | 2 | 1 | 137 | 1 | 137 | 2.43e-14 | 68.2 |
| Msa0467250 | AT2G48130.5 | 30.435 | 138 | 94 | 2 | 1 | 137 | 1 | 137 | 2.43e-14 | 68.2 |
| Msa0467250 | AT2G48130.1 | 30.435 | 138 | 94 | 2 | 1 | 137 | 1 | 137 | 2.43e-14 | 68.2 |
| Msa0467250 | AT2G48130.3 | 30.435 | 138 | 94 | 2 | 1 | 137 | 1 | 137 | 2.43e-14 | 68.2 |
| Msa0467250 | AT5G09370.2 | 37.963 | 108 | 60 | 3 | 23 | 128 | 21 | 123 | 9.09e-14 | 65.5 |
| Msa0467250 | AT5G09370.1 | 39.394 | 99 | 53 | 3 | 23 | 119 | 21 | 114 | 1.76e-13 | 65.5 |
| Msa0467250 | AT3G22600.1 | 30.108 | 93 | 63 | 2 | 9 | 100 | 6 | 97 | 6.99e-12 | 61.2 |
| Msa0467250 | AT1G27950.1 | 23.718 | 156 | 108 | 4 | 28 | 178 | 33 | 182 | 2.99e-11 | 60.1 |
| Msa0467250 | AT4G14815.1 | 30.000 | 90 | 62 | 1 | 11 | 100 | 7 | 95 | 5.10e-11 | 58.5 |
| Msa0467250 | AT3G43720.2 | 30.075 | 133 | 84 | 2 | 29 | 152 | 37 | 169 | 7.80e-11 | 58.9 |
| Msa0467250 | AT3G43720.1 | 30.370 | 135 | 83 | 3 | 29 | 152 | 37 | 171 | 8.70e-11 | 58.9 |
Find 55 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATTACCGCTGGAAAT+AGG | 0.158824 | 3_3:+68459656 | None:intergenic |
| TCTTATCAAGGACTTGTTTA+AGG | 0.173161 | 3_3:+68460352 | None:intergenic |
| ACCTTAGCTTCAGGGGATTT+AGG | 0.238114 | 3_3:+68459722 | None:intergenic |
| TGAATTGGATATATTGATAT+TGG | 0.256594 | 3_3:-68459372 | Msa0467250:three_prime_UTR |
| AATAATTACCGCTGGAAATA+GGG | 0.274317 | 3_3:+68459657 | None:intergenic |
| AGAAGACTCATTACTTGAAT+TGG | 0.276229 | 3_3:-68459387 | Msa0467250:three_prime_UTR |
| AAGGAGGTGGCTGGTGGCAG+AGG | 0.280788 | 3_3:-68459497 | Msa0467250:CDS |
| ATTCAACTTGATACCAAGTT+TGG | 0.282616 | 3_3:+68460287 | None:intergenic |
| GATAAACTTGTTACTCTTGC+TGG | 0.316761 | 3_3:-68460432 | Msa0467250:CDS |
| CCTTCAAACACCTTAGCTTC+AGG | 0.355634 | 3_3:+68459713 | None:intergenic |
| TTCAACTTGATACCAAGTTT+GGG | 0.358716 | 3_3:+68460288 | None:intergenic |
| ACACATTCAGTTATATTAGA+TGG | 0.359046 | 3_3:+68460225 | None:intergenic |
| TGGATTGGGAAGGAGGTGGC+TGG | 0.375917 | 3_3:-68459506 | Msa0467250:CDS |
| AGGGGAGGAACTGTTTGTTT+TGG | 0.377595 | 3_3:+68459676 | None:intergenic |
| GAAAAGAGTGGTGGTGGATT+GGG | 0.380896 | 3_3:-68459520 | Msa0467250:CDS |
| TGCATTATTATTTCTACTGT+TGG | 0.388007 | 3_3:-68460502 | Msa0467250:CDS |
| TTATTATTTCTACTGTTGGC+TGG | 0.403176 | 3_3:-68460498 | Msa0467250:CDS |
| CTTATCAAGGACTTGTTTAA+GGG | 0.407090 | 3_3:+68460353 | None:intergenic |
| GATGGTATGTGACAAGCGTT+TGG | 0.413443 | 3_3:+68460243 | None:intergenic |
| TGGATATATTGATATTGGTT+TGG | 0.429814 | 3_3:-68459367 | Msa0467250:three_prime_UTR |
| GGAAAAGAGTGGTGGTGGAT+TGG | 0.435272 | 3_3:-68459521 | Msa0467250:CDS |
| GCTAAGGTGTTTGAAGGACT+TGG | 0.437073 | 3_3:-68459707 | Msa0467250:CDS |
| GAGGTGGCTGGTGGCAGAGG+TGG | 0.447551 | 3_3:-68459494 | Msa0467250:CDS |
| AAGTGAGATATGAAAAGAAA+TGG | 0.450601 | 3_3:+68459457 | None:intergenic |
| GGAAGTACAACAATCTATAG+TGG | 0.456166 | 3_3:+68460374 | None:intergenic |
| CTTCAAACACCTTAGCTTCA+GGG | 0.472455 | 3_3:+68459714 | None:intergenic |
| ACCTAAATCCCCTGAAGCTA+AGG | 0.474094 | 3_3:-68459723 | Msa0467250:CDS |
| CCTGAAGCTAAGGTGTTTGA+AGG | 0.476875 | 3_3:-68459713 | Msa0467250:CDS |
| GATCGCAATGACCCCAAACT+TGG | 0.492547 | 3_3:-68460300 | Msa0467250:CDS |
| GTGGTGGATTGGGAAGGAGG+TGG | 0.495091 | 3_3:-68459510 | Msa0467250:CDS |
| GTGGTGGTGGATTGGGAAGG+AGG | 0.496077 | 3_3:-68459513 | Msa0467250:CDS |
| TCTGAGGAAAAGAGTGGTGG+TGG | 0.499326 | 3_3:-68459526 | Msa0467250:CDS |
| TGTTTAAGGTTCTGCTGAGA+GGG | 0.503753 | 3_3:-68459563 | Msa0467250:intron |
| GAAGTACAACAATCTATAGT+GGG | 0.507467 | 3_3:+68460375 | None:intergenic |
| ATTGGGAAGGAGGTGGCTGG+TGG | 0.530641 | 3_3:-68459503 | Msa0467250:CDS |
| TCAAACTTGAACTTCAAGCT+AGG | 0.546383 | 3_3:+68459428 | None:intergenic |
| TTCAAACACCTTAGCTTCAG+GGG | 0.554009 | 3_3:+68459715 | None:intergenic |
| ATAATTACCGCTGGAAATAG+GGG | 0.565206 | 3_3:+68459658 | None:intergenic |
| GGTTGTCTTCCATACGTTGG+TGG | 0.578596 | 3_3:-68460411 | Msa0467250:CDS |
| GCTGGTTGTCTTCCATACGT+TGG | 0.583066 | 3_3:-68460414 | Msa0467250:CDS |
| TTGGCACTACCACCAACGTA+TGG | 0.586024 | 3_3:+68460402 | None:intergenic |
| TGGAAGCTGTACAGCAAGAG+TGG | 0.593369 | 3_3:+68460263 | None:intergenic |
| TCAACTTGATACCAAGTTTG+GGG | 0.608436 | 3_3:+68460289 | None:intergenic |
| ATGTTTAAGGTTCTGCTGAG+AGG | 0.614875 | 3_3:-68459564 | Msa0467250:intron |
| AGAGTGGTGGTGGATTGGGA+AGG | 0.615185 | 3_3:-68459516 | Msa0467250:CDS |
| TCTAATATAACTGAATGTGT+AGG | 0.619647 | 3_3:-68460222 | Msa0467250:intron |
| GGGATCAAGCTCAAGTTCTG+AGG | 0.620498 | 3_3:-68459542 | Msa0467250:CDS |
| GGTCATTGCGATCTTTGATG+AGG | 0.621163 | 3_3:+68460310 | None:intergenic |
| GTTTAAGGTTCTGCTGAGAG+GGG | 0.633464 | 3_3:-68459562 | Msa0467250:intron |
| AAGTACAACAATCTATAGTG+GGG | 0.642782 | 3_3:+68460376 | None:intergenic |
| AGTTCCTCCCCTATTTCCAG+CGG | 0.660557 | 3_3:-68459665 | Msa0467250:intron |
| ATTACCGCTGGAAATAGGGG+AGG | 0.669828 | 3_3:+68459661 | None:intergenic |
| TCAAGTTCTGAGGAAAAGAG+TGG | 0.677014 | 3_3:-68459532 | Msa0467250:CDS |
| AGTACAACAATCTATAGTGG+GGG | 0.691483 | 3_3:+68460377 | None:intergenic |
| AGTTCTGAGGAAAAGAGTGG+TGG | 0.693229 | 3_3:-68459529 | Msa0467250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGAGAATTTTTTTTTGT+TGG | - | chr3_3:68459948-68459967 | Msa0467250:intron | 15.0% |
| !!! | TAATGAGAATTTTTTTTTGT+TGG | - | chr3_3:68459948-68459967 | Msa0467250:intron | 15.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | - | chr3_3:68459651-68459670 | Msa0467250:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | - | chr3_3:68459652-68459671 | Msa0467250:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | - | chr3_3:68459831-68459850 | Msa0467250:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | + | chr3_3:68460166-68460185 | None:intergenic | 20.0% |
| !! | TGAATTGGATATATTGATAT+TGG | - | chr3_3:68460440-68460459 | Msa0467250:CDS | 20.0% |
| !!! | TTAGTTTGCTTTATGTATTA+AGG | - | chr3_3:68459651-68459670 | Msa0467250:intron | 20.0% |
| !!! | TAGTTTGCTTTATGTATTAA+GGG | - | chr3_3:68459652-68459671 | Msa0467250:intron | 20.0% |
| !! | ATATAAATAAGGCTTAATCA+TGG | - | chr3_3:68459831-68459850 | Msa0467250:intron | 20.0% |
| !! | AAAATTATAATAATTACCGC+TGG | + | chr3_3:68460166-68460185 | None:intergenic | 20.0% |
| !! | TGAATTGGATATATTGATAT+TGG | - | chr3_3:68460440-68460459 | Msa0467250:CDS | 20.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | - | chr3_3:68459310-68459329 | Msa0467250:three_prime_UTR | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | + | chr3_3:68459590-68459609 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | - | chr3_3:68459590-68459609 | Msa0467250:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | + | chr3_3:68459862-68459881 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | - | chr3_3:68459862-68459881 | Msa0467250:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | - | chr3_3:68459952-68459971 | Msa0467250:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | + | chr3_3:68460242-68460261 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | + | chr3_3:68460358-68460377 | None:intergenic | 25.0% |
| !! | TGGATATATTGATATTGGTT+TGG | - | chr3_3:68460445-68460464 | Msa0467250:CDS | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | + | chr3_3:68460519-68460538 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | + | chr3_3:68460526-68460545 | None:intergenic | 25.0% |
| !!! | TGCATTATTATTTCTACTGT+TGG | - | chr3_3:68459310-68459329 | Msa0467250:three_prime_UTR | 25.0% |
| ! | ACACATTCAGTTATATTAGA+TGG | + | chr3_3:68459590-68459609 | None:intergenic | 25.0% |
| ! | TCTAATATAACTGAATGTGT+AGG | - | chr3_3:68459590-68459609 | Msa0467250:intron | 25.0% |
| !!! | CACTTACTTTTGAAGATTAT+TGG | + | chr3_3:68459862-68459881 | None:intergenic | 25.0% |
| ! | ATAATCTTCAAAAGTAAGTG+AGG | - | chr3_3:68459862-68459881 | Msa0467250:intron | 25.0% |
| !!! | GAGAATTTTTTTTTGTTGGT+CGG | - | chr3_3:68459952-68459971 | Msa0467250:intron | 25.0% |
| ! | AGAACCTTAAACATTATTAG+AGG | + | chr3_3:68460242-68460261 | None:intergenic | 25.0% |
| ! | AAGTGAGATATGAAAAGAAA+TGG | + | chr3_3:68460358-68460377 | None:intergenic | 25.0% |
| !! | TGGATATATTGATATTGGTT+TGG | - | chr3_3:68460445-68460464 | Msa0467250:CDS | 25.0% |
| ! | CTCAGAAAAATATAGGAATT+GGG | + | chr3_3:68460519-68460538 | None:intergenic | 25.0% |
| !! | GAATTTGCTCAGAAAAATAT+AGG | + | chr3_3:68460526-68460545 | None:intergenic | 25.0% |
| ! | TAATGCAGTTACACTTTTGT+TGG | + | chr3_3:68459297-68459316 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | - | chr3_3:68459314-68459333 | Msa0467250:three_prime_UTR | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | + | chr3_3:68459439-68459458 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | + | chr3_3:68459440-68459459 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | + | chr3_3:68459462-68459481 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | + | chr3_3:68459463-68459482 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | + | chr3_3:68459475-68459494 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | + | chr3_3:68459527-68459546 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | + | chr3_3:68459528-68459547 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | + | chr3_3:68459678-68459697 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | + | chr3_3:68459857-68459876 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | + | chr3_3:68460024-68460043 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | + | chr3_3:68460158-68460177 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | + | chr3_3:68460159-68460178 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | - | chr3_3:68460235-68460254 | Msa0467250:CDS | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | - | chr3_3:68460425-68460444 | Msa0467250:CDS | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | + | chr3_3:68460520-68460539 | None:intergenic | 30.0% | |
| ! | TAATGCAGTTACACTTTTGT+TGG | + | chr3_3:68459297-68459316 | None:intergenic | 30.0% |
| !! | TTATTATTTCTACTGTTGGC+TGG | - | chr3_3:68459314-68459333 | Msa0467250:three_prime_UTR | 30.0% |
| AAGTACAACAATCTATAGTG+GGG | + | chr3_3:68459439-68459458 | None:intergenic | 30.0% | |
| GAAGTACAACAATCTATAGT+GGG | + | chr3_3:68459440-68459459 | None:intergenic | 30.0% | |
| ! | CTTATCAAGGACTTGTTTAA+GGG | + | chr3_3:68459462-68459481 | None:intergenic | 30.0% |
| ! | TCTTATCAAGGACTTGTTTA+AGG | + | chr3_3:68459463-68459482 | None:intergenic | 30.0% |
| !!! | TGCATTTTTTGGTCTTATCA+AGG | + | chr3_3:68459475-68459494 | None:intergenic | 30.0% |
| TTCAACTTGATACCAAGTTT+GGG | + | chr3_3:68459527-68459546 | None:intergenic | 30.0% | |
| ATTCAACTTGATACCAAGTT+TGG | + | chr3_3:68459528-68459547 | None:intergenic | 30.0% | |
| CATATGTATATAGTCCAATC+AGG | + | chr3_3:68459678-68459697 | None:intergenic | 30.0% | |
| !! | ACTTTTGAAGATTATTGGAC+CGG | + | chr3_3:68459857-68459876 | None:intergenic | 30.0% |
| !! | ACATTCCATTGAGTTGAATT+AGG | + | chr3_3:68460024-68460043 | None:intergenic | 30.0% |
| AATAATTACCGCTGGAAATA+GGG | + | chr3_3:68460158-68460177 | None:intergenic | 30.0% | |
| TAATAATTACCGCTGGAAAT+AGG | + | chr3_3:68460159-68460178 | None:intergenic | 30.0% | |
| TGTGCCTCTAATAATGTTTA+AGG | - | chr3_3:68460235-68460254 | Msa0467250:CDS | 30.0% | |
| AGAAGACTCATTACTTGAAT+TGG | - | chr3_3:68460425-68460444 | Msa0467250:CDS | 30.0% | |
| GCTCAGAAAAATATAGGAAT+TGG | + | chr3_3:68460520-68460539 | None:intergenic | 30.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | - | chr3_3:68459380-68459399 | Msa0467250:three_prime_UTR | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | + | chr3_3:68459438-68459457 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | + | chr3_3:68459441-68459460 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | + | chr3_3:68459486-68459505 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | + | chr3_3:68459526-68459545 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | - | chr3_3:68459661-68459680 | Msa0467250:intron | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | - | chr3_3:68459835-68459854 | Msa0467250:intron | 35.0% | |
| GAGGAGACATATATTGAACT+TGG | + | chr3_3:68459895-68459914 | None:intergenic | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | + | chr3_3:68459914-68459933 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | + | chr3_3:68460157-68460176 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | + | chr3_3:68460387-68460406 | None:intergenic | 35.0% | |
| !! | GATAAACTTGTTACTCTTGC+TGG | - | chr3_3:68459380-68459399 | Msa0467250:three_prime_UTR | 35.0% |
| AGTACAACAATCTATAGTGG+GGG | + | chr3_3:68459438-68459457 | None:intergenic | 35.0% | |
| ! | GGAAGTACAACAATCTATAG+TGG | + | chr3_3:68459441-68459460 | None:intergenic | 35.0% |
| !!! | GAGGATACAGATGCATTTTT+TGG | + | chr3_3:68459486-68459505 | None:intergenic | 35.0% |
| TCAACTTGATACCAAGTTTG+GGG | + | chr3_3:68459526-68459545 | None:intergenic | 35.0% | |
| TTATGTATTAAGGGCCTGAT+TGG | - | chr3_3:68459661-68459680 | Msa0467250:intron | 35.0% | |
| AAATAAGGCTTAATCATGGC+CGG | - | chr3_3:68459835-68459854 | Msa0467250:intron | 35.0% | |
| GAGGAGACATATATTGAACT+TGG | + | chr3_3:68459895-68459914 | None:intergenic | 35.0% | |
| AATGTCTCATGTGACAAAAG+AGG | + | chr3_3:68459914-68459933 | None:intergenic | 35.0% | |
| ATAATTACCGCTGGAAATAG+GGG | + | chr3_3:68460157-68460176 | None:intergenic | 35.0% | |
| TCAAACTTGAACTTCAAGCT+AGG | + | chr3_3:68460387-68460406 | None:intergenic | 35.0% | |
| ! | ACAATCTATAGTGGGGGTAT+TGG | + | chr3_3:68459432-68459451 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | - | chr3_3:68459991-68460010 | Msa0467250:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | + | chr3_3:68460017-68460036 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | + | chr3_3:68460018-68460037 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | + | chr3_3:68460019-68460038 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | + | chr3_3:68460072-68460091 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | + | chr3_3:68460100-68460119 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | + | chr3_3:68460101-68460120 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | - | chr3_3:68460248-68460267 | Msa0467250:CDS | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | - | chr3_3:68460249-68460268 | Msa0467250:CDS | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | - | chr3_3:68460280-68460299 | Msa0467250:CDS | 40.0% |
| ! | ACAATCTATAGTGGGGGTAT+TGG | + | chr3_3:68459432-68459451 | None:intergenic | 40.0% |
| !! | TAGTAGCTTTACTTTTGCGC+CGG | - | chr3_3:68459991-68460010 | Msa0467250:intron | 40.0% |
| !! | ATTGAGTTGAATTAGGCACG+GGG | + | chr3_3:68460017-68460036 | None:intergenic | 40.0% |
| !! | CATTGAGTTGAATTAGGCAC+GGG | + | chr3_3:68460018-68460037 | None:intergenic | 40.0% |
| !! | CCATTGAGTTGAATTAGGCA+CGG | + | chr3_3:68460019-68460038 | None:intergenic | 40.0% |
| GGTGACAAATGTAGAAGATC+TGG | + | chr3_3:68460072-68460091 | None:intergenic | 40.0% | |
| TTCAAACACCTTAGCTTCAG+GGG | + | chr3_3:68460100-68460119 | None:intergenic | 40.0% | |
| CTTCAAACACCTTAGCTTCA+GGG | + | chr3_3:68460101-68460120 | None:intergenic | 40.0% | |
| ! | ATGTTTAAGGTTCTGCTGAG+AGG | - | chr3_3:68460248-68460267 | Msa0467250:CDS | 40.0% |
| ! | TGTTTAAGGTTCTGCTGAGA+GGG | - | chr3_3:68460249-68460268 | Msa0467250:CDS | 40.0% |
| !! | TCAAGTTCTGAGGAAAAGAG+TGG | - | chr3_3:68460280-68460299 | Msa0467250:CDS | 40.0% |
| GGTCATTGCGATCTTTGATG+AGG | + | chr3_3:68459505-68459524 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | + | chr3_3:68459572-68459591 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | + | chr3_3:68459978-68459997 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | - | chr3_3:68460016-68460035 | Msa0467250:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | - | chr3_3:68460089-68460108 | Msa0467250:intron | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | + | chr3_3:68460093-68460112 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | + | chr3_3:68460102-68460121 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | - | chr3_3:68460099-68460118 | Msa0467250:intron | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | - | chr3_3:68460105-68460124 | Msa0467250:intron | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | + | chr3_3:68460139-68460158 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | - | chr3_3:68460250-68460269 | Msa0467250:CDS | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | - | chr3_3:68460283-68460302 | Msa0467250:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | - | chr3_3:68460292-68460311 | Msa0467250:CDS | 45.0% |
| GGTCATTGCGATCTTTGATG+AGG | + | chr3_3:68459505-68459524 | None:intergenic | 45.0% | |
| GATGGTATGTGACAAGCGTT+TGG | + | chr3_3:68459572-68459591 | None:intergenic | 45.0% | |
| !! | GCTACTAAAGCCGTCGTTTT+TGG | + | chr3_3:68459978-68459997 | None:intergenic | 45.0% |
| CCGTGCCTAATTCAACTCAA+TGG | - | chr3_3:68460016-68460035 | Msa0467250:intron | 45.0% | |
| ACCTAAATCCCCTGAAGCTA+AGG | - | chr3_3:68460089-68460108 | Msa0467250:intron | 45.0% | |
| ACCTTAGCTTCAGGGGATTT+AGG | + | chr3_3:68460093-68460112 | None:intergenic | 45.0% | |
| CCTTCAAACACCTTAGCTTC+AGG | + | chr3_3:68460102-68460121 | None:intergenic | 45.0% | |
| ! | CCTGAAGCTAAGGTGTTTGA+AGG | - | chr3_3:68460099-68460118 | Msa0467250:intron | 45.0% |
| ! | GCTAAGGTGTTTGAAGGACT+TGG | - | chr3_3:68460105-68460124 | Msa0467250:intron | 45.0% |
| ! | AGGGGAGGAACTGTTTGTTT+TGG | + | chr3_3:68460139-68460158 | None:intergenic | 45.0% |
| ! | GTTTAAGGTTCTGCTGAGAG+GGG | - | chr3_3:68460250-68460269 | Msa0467250:CDS | 45.0% |
| !! | AGTTCTGAGGAAAAGAGTGG+TGG | - | chr3_3:68460283-68460302 | Msa0467250:CDS | 45.0% |
| !! | GAAAAGAGTGGTGGTGGATT+GGG | - | chr3_3:68460292-68460311 | Msa0467250:CDS | 45.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | - | chr3_3:68459820-68459839 | Msa0467250:intron | 5.0% |
| !! | TTAAAATGTTTATATAAATA+AGG | - | chr3_3:68459820-68459839 | Msa0467250:intron | 5.0% |
| GCTGGTTGTCTTCCATACGT+TGG | - | chr3_3:68459398-68459417 | Msa0467250:three_prime_UTR | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | - | chr3_3:68459401-68459420 | Msa0467250:three_prime_UTR | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | + | chr3_3:68459413-68459432 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | - | chr3_3:68459512-68459531 | Msa0467250:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | + | chr3_3:68459552-68459571 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | - | chr3_3:68459965-68459984 | Msa0467250:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | - | chr3_3:68460147-68460166 | Msa0467250:intron | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | + | chr3_3:68460154-68460173 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | - | chr3_3:68460270-68460289 | Msa0467250:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | - | chr3_3:68460286-68460305 | Msa0467250:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | - | chr3_3:68460291-68460310 | Msa0467250:CDS | 50.0% |
| GCTGGTTGTCTTCCATACGT+TGG | - | chr3_3:68459398-68459417 | Msa0467250:three_prime_UTR | 50.0% | |
| GGTTGTCTTCCATACGTTGG+TGG | - | chr3_3:68459401-68459420 | Msa0467250:three_prime_UTR | 50.0% | |
| TTGGCACTACCACCAACGTA+TGG | + | chr3_3:68459413-68459432 | None:intergenic | 50.0% | |
| GATCGCAATGACCCCAAACT+TGG | - | chr3_3:68459512-68459531 | Msa0467250:CDS | 50.0% | |
| TGGAAGCTGTACAGCAAGAG+TGG | + | chr3_3:68459552-68459571 | None:intergenic | 50.0% | |
| TGTTGGTCGGCCAAAAACGA+CGG | - | chr3_3:68459965-68459984 | Msa0467250:intron | 50.0% | |
| AGTTCCTCCCCTATTTCCAG+CGG | - | chr3_3:68460147-68460166 | Msa0467250:intron | 50.0% | |
| ATTACCGCTGGAAATAGGGG+AGG | + | chr3_3:68460154-68460173 | None:intergenic | 50.0% | |
| GGGATCAAGCTCAAGTTCTG+AGG | - | chr3_3:68460270-68460289 | Msa0467250:CDS | 50.0% | |
| TCTGAGGAAAAGAGTGGTGG+TGG | - | chr3_3:68460286-68460305 | Msa0467250:CDS | 50.0% | |
| !! | GGAAAAGAGTGGTGGTGGAT+TGG | - | chr3_3:68460291-68460310 | Msa0467250:CDS | 50.0% |
| AGTTGAATTAGGCACGGGGC+CGG | + | chr3_3:68460013-68460032 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | - | chr3_3:68460296-68460315 | Msa0467250:CDS | 55.0% |
| AGTTGAATTAGGCACGGGGC+CGG | + | chr3_3:68460013-68460032 | None:intergenic | 55.0% | |
| !! | AGAGTGGTGGTGGATTGGGA+AGG | - | chr3_3:68460296-68460315 | Msa0467250:CDS | 55.0% |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | - | chr3_3:68460299-68460318 | Msa0467250:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | - | chr3_3:68460302-68460321 | Msa0467250:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | - | chr3_3:68460306-68460325 | Msa0467250:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | - | chr3_3:68460309-68460328 | Msa0467250:CDS | 60.0% | |
| !! | GTGGTGGTGGATTGGGAAGG+AGG | - | chr3_3:68460299-68460318 | Msa0467250:CDS | 60.0% |
| !! | GTGGTGGATTGGGAAGGAGG+TGG | - | chr3_3:68460302-68460321 | Msa0467250:CDS | 60.0% |
| ! | TGGATTGGGAAGGAGGTGGC+TGG | - | chr3_3:68460306-68460325 | Msa0467250:CDS | 60.0% |
| ATTGGGAAGGAGGTGGCTGG+TGG | - | chr3_3:68460309-68460328 | Msa0467250:CDS | 60.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | - | chr3_3:68460315-68460334 | Msa0467250:CDS | 65.0% | |
| AAGGAGGTGGCTGGTGGCAG+AGG | - | chr3_3:68460315-68460334 | Msa0467250:CDS | 65.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | - | chr3_3:68460318-68460337 | Msa0467250:CDS | 70.0% | |
| GAGGTGGCTGGTGGCAGAGG+TGG | - | chr3_3:68460318-68460337 | Msa0467250:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 68459287 | 68460547 | 68459287 | ID=Msa0467250;Name=Msa0467250 |
| chr3_3 | mRNA | 68459287 | 68460547 | 68459287 | ID=Msa0467250-mRNA-1;Parent=Msa0467250;Name=Msa0467250-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.33|1|1|1|3|154|185 |
| chr3_3 | exon | 68459287 | 68459577 | 68459287 | ID=Msa0467250-mRNA-1:exon:15859;Parent=Msa0467250-mRNA-1 |
| chr3_3 | exon | 68459666 | 68459761 | 68459666 | ID=Msa0467250-mRNA-1:exon:15858;Parent=Msa0467250-mRNA-1 |
| chr3_3 | exon | 68460223 | 68460547 | 68460223 | ID=Msa0467250-mRNA-1:exon:15857;Parent=Msa0467250-mRNA-1 |
| chr3_3 | CDS | 68460223 | 68460547 | 68460223 | ID=Msa0467250-mRNA-1:cds;Parent=Msa0467250-mRNA-1 |
| chr3_3 | CDS | 68459666 | 68459761 | 68459666 | ID=Msa0467250-mRNA-1:cds;Parent=Msa0467250-mRNA-1 |
| chr3_3 | CDS | 68459441 | 68459577 | 68459441 | ID=Msa0467250-mRNA-1:cds;Parent=Msa0467250-mRNA-1 |
| chr3_3 | three_prime_UTR | 68459287 | 68459440 | 68459287 | ID=Msa0467250-mRNA-1:three_prime_utr;Parent=Msa0467250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
