AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130770 MtrunA17_Chr7g0276531 83.459 266 22 6 3 256 1 256 5.80e-143 400
Msa1130770 MtrunA17_Chr3g0144311 50.000 174 77 4 16 181 21 192 4.07e-45 152
Msa1130770 MtrunA17_Chr8g0346011 67.010 97 32 0 12 108 25 121 1.18e-43 149
Msa1130770 MtrunA17_Chr5g0426311 74.419 86 22 0 16 101 8 93 1.94e-43 148
Msa1130770 MtrunA17_Chr4g0017401 66.667 93 31 0 17 109 9 101 2.65e-41 142
Msa1130770 MtrunA17_Chr3g0127751 57.143 105 39 1 12 110 14 118 7.97e-37 130
Msa1130770 MtrunA17_Chr4g0045921 48.810 84 43 0 20 103 72 155 2.19e-19 86.3
Msa1130770 MtrunA17_Chr4g0045921 32.653 98 63 2 19 116 158 252 6.51e-12 64.7
Msa1130770 MtrunA17_Chr7g0255011 44.048 84 47 0 19 102 122 205 5.93e-18 82.8
Msa1130770 MtrunA17_Chr2g0290191 47.059 68 35 1 25 92 5 71 9.36e-18 82.0
Msa1130770 MtrunA17_Chr8g0360551 44.578 83 46 0 20 102 69 151 1.23e-17 81.6
Msa1130770 MtrunA17_Chr8g0360551 37.363 91 57 0 9 99 150 240 2.98e-13 68.9
Msa1130770 MtrunA17_Chr2g0278661 48.649 74 37 1 20 92 3 76 1.63e-17 79.3
Msa1130770 MtrunA17_Chr3g0101061 42.105 76 43 1 17 92 33 107 5.98e-17 80.1
Msa1130770 MtrunA17_Chr4g0061451 43.529 85 44 2 24 107 42 123 8.74e-17 77.8
Msa1130770 MtrunA17_Chr7g0266751 36.522 115 70 2 10 121 16 130 1.49e-16 74.3
Msa1130770 MtrunA17_Chr7g0219021 43.210 81 45 1 25 104 41 121 2.67e-16 76.3
Msa1130770 MtrunA17_Chr3g0121631 43.478 69 39 0 24 92 36 104 3.40e-16 73.6
Msa1130770 MtrunA17_Chr3g0086861 42.857 91 48 2 18 107 38 125 8.98e-16 76.3
Msa1130770 MtrunA17_Chr4g0035051 49.153 59 30 0 25 83 9 67 1.08e-15 71.2
Msa1130770 MtrunA17_Chr5g0440831 39.744 78 47 0 25 102 166 243 3.87e-15 74.7
Msa1130770 MtrunA17_Chr4g0050781 45.833 72 35 1 20 91 3 70 8.32e-15 71.2
Msa1130770 MtrunA17_Chr7g0219031 49.153 59 30 0 25 83 41 99 9.87e-15 68.6
Msa1130770 MtrunA17_Chr1g0186351 37.500 80 49 1 20 99 2 80 9.97e-15 73.2
Msa1130770 MtrunA17_Chr5g0447761 46.667 60 32 0 25 84 7 66 1.01e-14 73.2
Msa1130770 MtrunA17_Chr4g0035031 43.421 76 42 1 25 99 9 84 1.07e-14 70.5
Msa1130770 MtrunA17_Chr3g0119311 36.957 92 54 2 24 114 36 124 1.10e-14 68.9
Msa1130770 MtrunA17_Chr3g0135111 42.500 80 45 1 20 99 6 84 2.46e-14 71.6
Msa1130770 MtrunA17_Chr4g0035001 47.458 59 31 0 25 83 7 65 3.69e-14 68.2
Msa1130770 MtrunA17_Chr4g0031091 42.500 80 45 1 24 102 33 112 1.94e-13 65.1
Msa1130770 MtrunA17_Chr1g0198431 37.755 98 60 1 3 99 171 268 3.19e-13 67.8
Msa1130770 MtrunA17_Chr1g0210241 36.905 84 49 1 24 107 7 86 2.85e-12 65.1
Msa1130770 MtrunA17_Chr4g0042161 45.000 60 33 0 24 83 51 110 3.41e-12 62.4
Msa1130770 MtrunA17_Chr3g0120721 40.625 64 38 0 25 88 19 82 8.59e-12 64.3
Msa1130770 MtrunA17_Chr3g0088511 44.828 58 32 0 24 81 32 89 9.75e-12 61.2
Msa1130770 MtrunA17_Chr6g0449481 42.188 64 37 0 25 88 46 109 3.21e-11 62.8
Msa1130770 MtrunA17_Chr7g0276201 47.541 61 32 0 24 84 104 164 5.63e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130770 AT3G54770.1 47.222 252 107 9 6 245 2 239 2.28e-54 176
Msa1130770 AT3G54770.3 47.222 252 107 9 6 245 2 239 4.71e-54 175
Msa1130770 AT1G20880.2 75.824 91 22 0 16 106 16 106 9.76e-46 154
Msa1130770 AT1G20880.3 75.824 91 22 0 16 106 16 106 9.76e-46 154
Msa1130770 AT1G20880.1 75.824 91 22 0 16 106 16 106 9.76e-46 154
Msa1130770 AT1G76460.1 75.824 91 22 0 16 106 16 106 9.97e-46 155
Msa1130770 AT1G22910.2 67.391 92 30 0 18 109 7 98 1.82e-41 142
Msa1130770 AT1G22910.1 67.391 92 30 0 18 109 7 98 2.75e-41 142
Msa1130770 AT3G54770.2 45.972 211 94 8 40 245 1 196 8.91e-41 140
Msa1130770 AT2G46780.1 67.368 95 29 1 20 114 18 110 9.48e-41 143
Msa1130770 AT2G46780.2 67.368 95 29 1 20 114 18 110 9.48e-41 143
Msa1130770 AT1G33470.2 46.108 167 76 4 20 182 3 159 1.27e-40 140
Msa1130770 AT1G22910.3 67.391 92 30 0 18 109 7 98 2.18e-40 142
Msa1130770 AT1G33470.1 46.875 160 81 3 20 178 3 159 5.52e-40 139
Msa1130770 AT1G33470.3 46.875 160 81 3 20 178 3 159 5.65e-40 139
Msa1130770 AT1G22330.1 65.934 91 31 0 16 106 9 99 1.33e-39 139
Msa1130770 AT1G78260.1 66.279 86 29 0 16 101 9 94 1.26e-37 134
Msa1130770 AT1G78260.2 66.279 86 29 0 16 101 9 94 1.50e-37 133
Msa1130770 AT5G11412.1 54.118 85 39 0 20 104 48 132 1.60e-29 109
Msa1130770 AT5G53680.1 48.454 97 47 1 20 116 9 102 2.45e-26 101
Msa1130770 AT3G06970.1 46.154 91 49 0 20 110 8 98 6.69e-24 98.2
Msa1130770 AT5G53720.1 49.383 81 41 0 24 104 9 89 1.74e-23 91.7
Msa1130770 AT2G22090.2 49.398 83 42 0 20 102 100 182 1.81e-19 86.7
Msa1130770 AT2G22090.1 49.398 83 42 0 20 102 100 182 1.85e-19 86.7
Msa1130770 AT3G15010.1 37.500 96 60 0 9 104 152 247 1.77e-18 84.3
Msa1130770 AT3G15010.1 42.308 104 59 1 20 123 71 173 9.44e-18 82.4
Msa1130770 AT3G15010.2 37.500 96 60 0 9 104 152 247 1.77e-18 84.3
Msa1130770 AT3G15010.2 42.308 104 59 1 20 123 71 173 9.44e-18 82.4
Msa1130770 AT3G23830.2 41.379 87 50 1 24 109 35 121 3.02e-18 79.0
Msa1130770 AT3G23830.1 41.379 87 50 1 24 109 35 121 3.02e-18 79.0
Msa1130770 AT4G39260.3 40.000 85 47 1 25 109 7 87 5.08e-18 77.0
Msa1130770 AT4G26650.2 44.444 72 39 1 21 92 9 79 2.30e-17 81.3
Msa1130770 AT4G26650.1 44.444 72 39 1 21 92 12 82 2.60e-17 81.3
Msa1130770 AT4G39260.2 41.558 77 41 1 25 101 7 79 7.30e-17 75.1
Msa1130770 AT4G39260.4 50.000 60 30 0 25 84 7 66 7.49e-17 74.3
Msa1130770 AT2G41060.1 38.947 95 56 1 20 114 124 216 8.38e-17 79.7
Msa1130770 AT2G41060.3 38.947 95 56 1 20 114 124 216 8.38e-17 79.7
Msa1130770 AT2G41060.2 38.947 95 56 1 20 114 124 216 8.38e-17 79.7
Msa1130770 AT4G14300.1 44.928 69 38 0 20 88 2 70 1.22e-16 79.0
Msa1130770 AT4G14300.2 44.928 69 38 0 20 88 2 70 1.22e-16 79.0
Msa1130770 AT4G13850.4 39.785 93 45 2 24 116 35 116 1.61e-16 74.3
Msa1130770 AT4G39260.1 41.558 77 41 1 25 101 7 79 1.99e-16 75.1
Msa1130770 AT5G55550.10 32.039 103 70 0 20 122 2 104 2.33e-16 78.6
Msa1130770 AT5G55550.8 32.039 103 70 0 20 122 2 104 2.38e-16 78.6
Msa1130770 AT4G13850.3 39.362 94 46 2 24 117 35 117 2.59e-16 73.9
Msa1130770 AT5G55550.5 41.096 73 42 1 20 92 2 73 2.97e-16 78.2
Msa1130770 AT5G55550.4 41.096 73 42 1 20 92 2 73 2.97e-16 78.2
Msa1130770 AT5G55550.9 41.096 73 42 1 20 92 2 73 2.97e-16 78.2
Msa1130770 AT5G55550.7 41.096 73 42 1 20 92 2 73 2.97e-16 78.2
Msa1130770 AT5G55550.1 41.096 73 42 1 20 92 2 73 2.97e-16 78.2
Msa1130770 AT5G55550.2 41.096 73 42 1 20 92 2 73 3.05e-16 78.2
Msa1130770 AT5G55550.3 41.096 73 42 1 20 92 2 73 3.05e-16 78.2
Msa1130770 AT5G55550.6 41.096 73 42 1 20 92 2 73 3.05e-16 78.2
Msa1130770 AT5G55550.11 41.096 73 42 1 20 92 2 73 3.05e-16 78.2
Msa1130770 AT4G13850.2 39.362 94 46 2 24 117 35 117 3.19e-16 73.9
Msa1130770 AT4G13850.1 39.362 94 46 2 24 117 35 117 3.57e-16 73.9
Msa1130770 AT2G21660.2 54.237 59 27 0 25 83 9 67 3.61e-16 73.9
Msa1130770 AT5G47620.1 45.312 64 35 0 25 88 7 70 4.43e-16 77.4
Msa1130770 AT5G47620.2 45.312 64 35 0 25 88 7 70 4.43e-16 77.4
Msa1130770 AT5G47620.5 45.312 64 35 0 25 88 7 70 4.43e-16 77.4
Msa1130770 AT2G19380.1 30.337 178 106 4 20 181 404 579 4.64e-16 77.8
Msa1130770 AT5G47620.4 45.312 64 35 0 25 88 7 70 4.87e-16 77.4
Msa1130770 AT2G21660.1 54.237 59 27 0 25 83 9 67 5.20e-16 73.9
Msa1130770 AT3G56860.9 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.11 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.8 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.5 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.7 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.2 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.6 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.10 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.3 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.1 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT3G56860.4 42.308 78 45 0 25 102 141 218 6.18e-16 77.4
Msa1130770 AT1G74230.1 44.156 77 43 0 24 100 34 110 2.08e-15 74.7
Msa1130770 AT1G17640.2 45.455 66 36 0 25 90 67 132 2.52e-15 75.1
Msa1130770 AT1G17640.1 45.455 66 36 0 25 90 67 132 2.52e-15 75.1
Msa1130770 AT1G17640.3 45.455 66 36 0 25 90 67 132 2.52e-15 75.1
Msa1130770 AT2G22100.1 35.135 111 69 1 20 127 159 269 2.60e-15 75.1
Msa1130770 AT5G61030.2 44.928 69 34 1 24 92 40 104 3.25e-15 74.3
Msa1130770 AT5G61030.1 44.928 69 34 1 24 92 40 104 3.25e-15 74.3
Msa1130770 AT3G26420.1 47.761 67 31 1 25 91 8 70 3.30e-15 73.2
Msa1130770 AT3G07810.1 34.615 104 56 3 25 128 7 98 1.77e-14 73.2
Msa1130770 AT3G07810.2 34.615 104 56 3 25 128 7 98 1.98e-14 72.8
Msa1130770 AT5G06210.1 45.833 72 35 1 24 95 34 101 2.61e-14 68.9
Msa1130770 AT4G13860.1 39.024 82 45 2 24 102 3 82 1.61e-13 65.1
Msa1130770 AT3G13224.2 39.362 94 52 3 4 96 1 90 3.04e-13 68.9
Msa1130770 AT2G33410.1 33.803 71 47 0 20 90 2 72 1.28e-12 67.4
Msa1130770 AT3G13224.1 39.362 94 52 3 4 96 1 90 1.38e-12 65.9
Msa1130770 AT5G59865.1 50.980 51 25 0 22 72 24 74 1.61e-12 63.2
Msa1130770 AT3G08000.1 33.654 104 61 3 25 125 42 140 3.33e-12 62.8
Msa1130770 AT1G58470.2 41.429 70 41 0 20 89 2 71 3.49e-12 65.9
Msa1130770 AT1G58470.1 41.429 70 41 0 20 89 2 71 3.49e-12 65.9
Msa1130770 AT5G40490.1 44.615 65 36 0 25 89 43 107 4.94e-12 65.5
Msa1130770 AT3G13224.3 40.278 72 42 1 25 96 11 81 7.89e-12 64.7
Msa1130770 AT3G20930.1 40.909 88 50 2 25 110 283 370 1.25e-11 64.3
Msa1130770 AT1G18630.1 41.791 67 37 1 19 83 29 95 1.58e-11 61.2
Msa1130770 AT4G36960.1 40.678 59 35 0 25 83 4 62 5.60e-11 62.4
Msa1130770 AT4G36960.2 40.678 59 35 0 25 83 4 62 5.60e-11 62.4

Find 111 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTCAGTAACAAAAGTATT+TGG 0.196601 7_3:+82972559 None:intergenic
GGAGAAGGAGGAGAAGTTAT+GGG 0.298152 7_3:+82972118 None:intergenic
GCGTGATGATGATGGAATAT+TGG 0.316199 7_3:+82972025 None:intergenic
TGGAGAAGGAGGAGAAGTTA+TGG 0.320433 7_3:+82972117 None:intergenic
CGTGATGATGATGGAATATT+GGG 0.323951 7_3:+82972026 None:intergenic
ATGGATCACCATCACAGTTT+GGG 0.341928 7_3:-82972411 Msa1130770:CDS
AATGGATCACCATCACAGTT+TGG 0.360186 7_3:-82972412 Msa1130770:CDS
TGTTCTCTTAATGTGTCTTT+CGG 0.360765 7_3:+82972340 None:intergenic
TGGTTGCTGCGGTGGATCTT+TGG 0.373820 7_3:+82972097 None:intergenic
ATAATTTCTGATAAGGTTAC+CGG 0.382398 7_3:-82972283 Msa1130770:CDS
TGTTTGTTGGAGGTCTTGCC+TGG 0.388391 7_3:-82972369 Msa1130770:CDS
AGCTGTCATAATTTCTGATA+AGG 0.401698 7_3:-82972290 Msa1130770:CDS
TGTTACAAATCCATAGCCTT+TGG 0.401760 7_3:+82972255 None:intergenic
AAGCATTCACCCGTGCCAAC+TGG 0.407073 7_3:+82971338 None:intergenic
CATCACGCCCTTCCTTTCTA+CGG 0.413597 7_3:-82972010 Msa1130770:CDS
CCTGCTGCTGGTTGCTGCGG+TGG 0.413826 7_3:+82972089 None:intergenic
ACTCAGTAACAAAAGTATTT+GGG 0.422425 7_3:+82972560 None:intergenic
CTCTTGGTGCTCGCCGTCCA+AGG 0.426692 7_3:-82972147 Msa1130770:CDS
AATAATGATAATGATGAGTT+GGG 0.437625 7_3:+82971505 None:intergenic
CAGAAATTATGACAGCTTCA+AGG 0.453018 7_3:+82972296 None:intergenic
CCGCCGAGGCAGGCTATTGT+GGG 0.455950 7_3:-82971621 Msa1130770:CDS
ACGCTGACAAAAGTGTTTGT+TGG 0.457047 7_3:-82972382 Msa1130770:CDS
AAGGAAGGGCGTGATGATGA+TGG 0.457080 7_3:+82972017 None:intergenic
TCCATAGCCTTTGGATCTGC+CGG 0.474152 7_3:+82972264 None:intergenic
GAATAATGATAATGATGAGT+TGG 0.476228 7_3:+82971504 None:intergenic
GATCTGTAGACAGGAGGAGC+AGG 0.479037 7_3:+82971573 None:intergenic
GAATATTGGGGAAGGAGGTG+TGG 0.480515 7_3:+82972039 None:intergenic
GCACGGGTGAATGCTTCAAA+AGG 0.482053 7_3:-82971331 Msa1130770:CDS
ACTCCTAGTCCTACTACAAC+AGG 0.483068 7_3:-82971471 Msa1130770:intron
GGGTGGAAGATTTGAGGTGG+AGG 0.485695 7_3:+82971525 None:intergenic
ATGCAGAAACTGAGCTGCTA+TGG 0.487256 7_3:-82971666 Msa1130770:intron
AGCTGCTATGGAATGGGTGG+GGG 0.487505 7_3:-82971654 Msa1130770:CDS
AGATGCAGAGGCTGCAAAGA+AGG 0.488455 7_3:-82972227 Msa1130770:CDS
TGTGTCTTTCGGAGTTTCCC+AGG 0.489644 7_3:+82972351 None:intergenic
CCACAATAGCCTGCCTCGGC+GGG 0.493685 7_3:+82971622 None:intergenic
GCAGGGTGGTGGTACATGAT+TGG 0.499499 7_3:+82971591 None:intergenic
ATCACGCCCTTCCTTTCTAC+GGG 0.499631 7_3:-82972009 Msa1130770:intron
CCACCGCAGCAACCAGCAGC+AGG 0.500038 7_3:-82972089 Msa1130770:CDS
ATCAACCGAGGCTATGGCCA+TGG 0.501706 7_3:-82971553 Msa1130770:CDS
ATATATTAACCTGTTGTAGT+AGG 0.505308 7_3:+82971462 None:intergenic
CTACAGATCAACCGAGGCTA+TGG 0.506662 7_3:-82971559 Msa1130770:CDS
TAAAATATATACCCGTAGAA+AGG 0.515467 7_3:+82971998 None:intergenic
CATATGATCTGTTGCAATGT+AGG 0.515946 7_3:+82971809 None:intergenic
GCCTCGGTTGATCTGTAGAC+AGG 0.521868 7_3:+82971564 None:intergenic
ATATATACCCGTAGAAAGGA+AGG 0.523229 7_3:+82972002 None:intergenic
AACTGCAATATCGCTTCTCT+TGG 0.523354 7_3:-82972163 Msa1130770:CDS
TAGTCAGTCTATAAGAAAGA+AGG 0.524612 7_3:+82972507 None:intergenic
GCAGGTTCAATGGTATTATC+CGG 0.525480 7_3:-82972071 Msa1130770:CDS
TAACCTGTTGTAGTAGGACT+AGG 0.534126 7_3:+82971468 None:intergenic
TAGGACTAGGAGTGATGGAT+GGG 0.535767 7_3:+82971481 None:intergenic
TTACAACTGCAATTACAATC+AGG 0.535938 7_3:-82971784 Msa1130770:intron
GGAGGTGTGGGTGTTCCCAC+CGG 0.538024 7_3:+82972052 None:intergenic
ACCGGCAGATCCAAAGGCTA+TGG 0.539327 7_3:-82972265 Msa1130770:CDS
AGACAGGAGGAGCAGGGTGG+TGG 0.540978 7_3:+82971580 None:intergenic
CTGACAAAAGTGTTTGTTGG+AGG 0.542823 7_3:-82972379 Msa1130770:CDS
GCAACCAGCAGCAGGTTCAA+TGG 0.542889 7_3:-82972081 Msa1130770:CDS
GACACCCATGGCCATAGCCT+CGG 0.543694 7_3:+82971548 None:intergenic
GAAACTGAGCTGCTATGGAA+TGG 0.543845 7_3:-82971661 Msa1130770:CDS
CTGCGGTGGATCTTTGGAGA+AGG 0.543985 7_3:+82972103 None:intergenic
AATATTGGGGAAGGAGGTGT+GGG 0.546556 7_3:+82972040 None:intergenic
GATATTGATCATGACGATGA+TGG 0.548742 7_3:-82972455 Msa1130770:exon
GAACCAACTGTGATCATCAA+TGG 0.551058 7_3:-82972196 Msa1130770:CDS
ATTGATAGGTCCAGTTGGCA+CGG 0.551120 7_3:-82971348 Msa1130770:intron
AATACCATTGAACCTGCTGC+TGG 0.553977 7_3:+82972077 None:intergenic
AAGCGATATTGCAGTTGGCT+CGG 0.556799 7_3:+82972170 None:intergenic
TTGATAGGTCCAGTTGGCAC+GGG 0.560846 7_3:-82971347 Msa1130770:intron
CTGAGCTGCTATGGAATGGG+TGG 0.561043 7_3:-82971657 Msa1130770:CDS
AAACTGAGCTGCTATGGAAT+GGG 0.561703 7_3:-82971660 Msa1130770:CDS
GAAGTTATGGGAGAAGACCT+TGG 0.565897 7_3:+82972130 None:intergenic
CCCACAATAGCCTGCCTCGG+CGG 0.568725 7_3:+82971621 None:intergenic
GTAGGACTAGGAGTGATGGA+TGG 0.572210 7_3:+82971480 None:intergenic
GAGCTGCTATGGAATGGGTG+GGG 0.576596 7_3:-82971655 Msa1130770:CDS
GAACCTGCTGCTGGTTGCTG+CGG 0.576807 7_3:+82972086 None:intergenic
CGACCATTGATGATCACAGT+TGG 0.578434 7_3:+82972193 None:intergenic
TGAGCTGCTATGGAATGGGT+GGG 0.580096 7_3:-82971656 Msa1130770:CDS
CGGTGGATCTTTGGAGAAGG+AGG 0.581010 7_3:+82972106 None:intergenic
AAGGTTACCGGCAGATCCAA+AGG 0.581260 7_3:-82972271 Msa1130770:CDS
TCAACCGAGGCTATGGCCAT+GGG 0.585523 7_3:-82971552 Msa1130770:CDS
GGTGGAAGATTTGAGGTGGA+GGG 0.586269 7_3:+82971526 None:intergenic
TGAGTTGGGTGGAAGATTTG+AGG 0.586506 7_3:+82971519 None:intergenic
TGATGGAATATTGGGGAAGG+AGG 0.587373 7_3:+82972034 None:intergenic
TGAATGCTTCAAAAGGGTAG+TGG 0.590972 7_3:-82971324 Msa1130770:CDS
GGCTGCAAAGAAGGCTTGCG+AGG 0.592252 7_3:-82972218 Msa1130770:CDS
TGAATATTGATAGGTCCAGT+TGG 0.592422 7_3:-82971353 Msa1130770:intron
AAGAGAAGCGATATTGCAGT+TGG 0.596190 7_3:+82972165 None:intergenic
TGTAGTAGGACTAGGAGTGA+TGG 0.600167 7_3:+82971476 None:intergenic
GTTGGGTGGAAGATTTGAGG+TGG 0.600463 7_3:+82971522 None:intergenic
GCACCCACAATAGCCTGCCT+CGG 0.602284 7_3:+82971618 None:intergenic
ATGATCTGTTGCAATGTAGG+TGG 0.608013 7_3:+82971812 None:intergenic
GGTTCAATGGTATTATCCGG+TGG 0.611241 7_3:-82972068 Msa1130770:CDS
TGTAACATTCAAAGATGCAG+AGG 0.612207 7_3:-82972239 Msa1130770:CDS
CACGGGTGAATGCTTCAAAA+GGG 0.613875 7_3:-82971330 Msa1130770:CDS
ATATTGATCATGACGATGAT+GGG 0.616366 7_3:-82972454 Msa1130770:exon
TTGAGGTGGAGGGACACCCA+TGG 0.627473 7_3:+82971536 None:intergenic
TATATACCCGTAGAAAGGAA+GGG 0.631562 7_3:+82972003 None:intergenic
ATCTGTAGACAGGAGGAGCA+GGG 0.632459 7_3:+82971574 None:intergenic
GTTTGTTGGAGGTCTTGCCT+GGG 0.633552 7_3:-82972368 Msa1130770:CDS
GTTCAATGGTATTATCCGGT+GGG 0.634469 7_3:-82972067 Msa1130770:CDS
TGATCTGTTGCAATGTAGGT+GGG 0.635848 7_3:+82971813 None:intergenic
AATGATAATGATGAGTTGGG+TGG 0.637114 7_3:+82971508 None:intergenic
TGATGATGGAATATTGGGGA+AGG 0.639851 7_3:+82972031 None:intergenic
TTATGGGAGAAGACCTTGGA+CGG 0.649901 7_3:+82972134 None:intergenic
GTTGTGTCCCCAAACTGTGA+TGG 0.652121 7_3:+82972403 None:intergenic
AGCAGCAACAGCAACAACAA+TGG 0.659160 7_3:-82972430 Msa1130770:CDS
GGGGCTACGTGTACCCGCCG+AGG 0.659428 7_3:-82971635 Msa1130770:CDS
AGGACTAGGAGTGATGGATG+GGG 0.665517 7_3:+82971482 None:intergenic
TGGATCACCATCACAGTTTG+GGG 0.666646 7_3:-82972410 Msa1130770:CDS
TCGGTTGATCTGTAGACAGG+AGG 0.670555 7_3:+82971567 None:intergenic
TCCTGTCTACAGATCAACCG+AGG 0.712533 7_3:-82971565 Msa1130770:CDS
GTGATGATGATGGAATATTG+GGG 0.716207 7_3:+82972027 None:intergenic
TGTAGACAGGAGGAGCAGGG+TGG 0.747299 7_3:+82971577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTCTTGTTATTGAATT+AGG + chr7_3:82972160-82972179 None:intergenic 15.0%
!!! TTTTAATTTGAAAAAATGGT+TGG - chr7_3:82972185-82972204 Msa1130770:CDS 15.0%
!!! ATATTTCTTGTTATTGAATT+AGG + chr7_3:82972160-82972179 None:intergenic 15.0%
!!! TTTTAATTTGAAAAAATGGT+TGG - chr7_3:82972185-82972204 Msa1130770:CDS 15.0%
!!! CATTTAAATCACATTTGTTA+AGG + chr7_3:82972015-82972034 None:intergenic 20.0%
!!! AATAATGATAATGATGAGTT+GGG + chr7_3:82972376-82972395 None:intergenic 20.0%
!!! CATTTAAATCACATTTGTTA+AGG + chr7_3:82972015-82972034 None:intergenic 20.0%
!!! AATAATGATAATGATGAGTT+GGG + chr7_3:82972376-82972395 None:intergenic 20.0%
!! AGAGAACACTTTGAAAAATA+CGG - chr7_3:82971553-82971572 Msa1130770:CDS 25.0%
! ATAATTTCTGATAAGGTTAC+CGG - chr7_3:82971595-82971614 Msa1130770:CDS 25.0%
! TAAAATATATACCCGTAGAA+AGG + chr7_3:82971883-82971902 None:intergenic 25.0%
!! TAAATCACATTTGTTAAGGT+CGG + chr7_3:82972011-82972030 None:intergenic 25.0%
! CAATTACAATCAGGTATATA+TGG - chr7_3:82972103-82972122 Msa1130770:CDS 25.0%
!! GAATAATGATAATGATGAGT+TGG + chr7_3:82972377-82972396 None:intergenic 25.0%
! ATATATTAACCTGTTGTAGT+AGG + chr7_3:82972419-82972438 None:intergenic 25.0%
!! AGAGAACACTTTGAAAAATA+CGG - chr7_3:82971553-82971572 Msa1130770:CDS 25.0%
! ATAATTTCTGATAAGGTTAC+CGG - chr7_3:82971595-82971614 Msa1130770:CDS 25.0%
! TAAAATATATACCCGTAGAA+AGG + chr7_3:82971883-82971902 None:intergenic 25.0%
!! TAAATCACATTTGTTAAGGT+CGG + chr7_3:82972011-82972030 None:intergenic 25.0%
! CAATTACAATCAGGTATATA+TGG - chr7_3:82972103-82972122 Msa1130770:CDS 25.0%
!! GAATAATGATAATGATGAGT+TGG + chr7_3:82972377-82972396 None:intergenic 25.0%
! ATATATTAACCTGTTGTAGT+AGG + chr7_3:82972419-82972438 None:intergenic 25.0%
!! CACTCAGTAACAAAAGTATT+TGG + chr7_3:82971322-82971341 None:intergenic 30.0%
TAGTCAGTCTATAAGAAAGA+AGG + chr7_3:82971374-82971393 None:intergenic 30.0%
ATATTGATCATGACGATGAT+GGG - chr7_3:82971424-82971443 Msa1130770:intron 30.0%
TGTTCTCTTAATGTGTCTTT+CGG + chr7_3:82971541-82971560 None:intergenic 30.0%
AGCTGTCATAATTTCTGATA+AGG - chr7_3:82971588-82971607 Msa1130770:CDS 30.0%
! AAATCACATTTGTTAAGGTC+GGG + chr7_3:82972010-82972029 None:intergenic 30.0%
TTACAACTGCAATTACAATC+AGG - chr7_3:82972094-82972113 Msa1130770:CDS 30.0%
GGCATGCAATGTAATAATAT+TGG + chr7_3:82972139-82972158 None:intergenic 30.0%
!! CACTCAGTAACAAAAGTATT+TGG + chr7_3:82971322-82971341 None:intergenic 30.0%
TAGTCAGTCTATAAGAAAGA+AGG + chr7_3:82971374-82971393 None:intergenic 30.0%
ATATTGATCATGACGATGAT+GGG - chr7_3:82971424-82971443 Msa1130770:intron 30.0%
TGTTCTCTTAATGTGTCTTT+CGG + chr7_3:82971541-82971560 None:intergenic 30.0%
AGCTGTCATAATTTCTGATA+AGG - chr7_3:82971588-82971607 Msa1130770:CDS 30.0%
! AAATCACATTTGTTAAGGTC+GGG + chr7_3:82972010-82972029 None:intergenic 30.0%
TTACAACTGCAATTACAATC+AGG - chr7_3:82972094-82972113 Msa1130770:CDS 30.0%
GGCATGCAATGTAATAATAT+TGG + chr7_3:82972139-82972158 None:intergenic 30.0%
GATATTGATCATGACGATGA+TGG - chr7_3:82971423-82971442 Msa1130770:intron 35.0%
CAGAAATTATGACAGCTTCA+AGG + chr7_3:82971585-82971604 None:intergenic 35.0%
TGTTACAAATCCATAGCCTT+TGG + chr7_3:82971626-82971645 None:intergenic 35.0%
TGTAACATTCAAAGATGCAG+AGG - chr7_3:82971639-82971658 Msa1130770:CDS 35.0%
!! GTGATGATGATGGAATATTG+GGG + chr7_3:82971854-82971873 None:intergenic 35.0%
!! CGTGATGATGATGGAATATT+GGG + chr7_3:82971855-82971874 None:intergenic 35.0%
TATATACCCGTAGAAAGGAA+GGG + chr7_3:82971878-82971897 None:intergenic 35.0%
ATATATACCCGTAGAAAGGA+AGG + chr7_3:82971879-82971898 None:intergenic 35.0%
!!! CTTGTTTGTTTTGGGTGAAA+GGG - chr7_3:82971978-82971997 Msa1130770:intron 35.0%
ATCTCCTCTTTCTTTCATTC+AGG - chr7_3:82972036-82972055 Msa1130770:CDS 35.0%
TGTACCTGAATGAAAGAAAG+AGG + chr7_3:82972043-82972062 None:intergenic 35.0%
CATATGATCTGTTGCAATGT+AGG + chr7_3:82972072-82972091 None:intergenic 35.0%
! AATGATAATGATGAGTTGGG+TGG + chr7_3:82972373-82972392 None:intergenic 35.0%
AAAGTGACAGTTTGTGTTTG+TGG - chr7_3:82972498-82972517 Msa1130770:five_prime_UTR 35.0%
AAGTGACAGTTTGTGTTTGT+GGG - chr7_3:82972499-82972518 Msa1130770:five_prime_UTR 35.0%
!! TGTGGGTGTTGAATATTGAT+AGG - chr7_3:82972516-82972535 Msa1130770:five_prime_UTR 35.0%
TGAATATTGATAGGTCCAGT+TGG - chr7_3:82972525-82972544 Msa1130770:five_prime_UTR 35.0%
GATATTGATCATGACGATGA+TGG - chr7_3:82971423-82971442 Msa1130770:intron 35.0%
CAGAAATTATGACAGCTTCA+AGG + chr7_3:82971585-82971604 None:intergenic 35.0%
TGTTACAAATCCATAGCCTT+TGG + chr7_3:82971626-82971645 None:intergenic 35.0%
TGTAACATTCAAAGATGCAG+AGG - chr7_3:82971639-82971658 Msa1130770:CDS 35.0%
!! GTGATGATGATGGAATATTG+GGG + chr7_3:82971854-82971873 None:intergenic 35.0%
!! CGTGATGATGATGGAATATT+GGG + chr7_3:82971855-82971874 None:intergenic 35.0%
TATATACCCGTAGAAAGGAA+GGG + chr7_3:82971878-82971897 None:intergenic 35.0%
ATATATACCCGTAGAAAGGA+AGG + chr7_3:82971879-82971898 None:intergenic 35.0%
!!! CTTGTTTGTTTTGGGTGAAA+GGG - chr7_3:82971978-82971997 Msa1130770:intron 35.0%
ATCTCCTCTTTCTTTCATTC+AGG - chr7_3:82972036-82972055 Msa1130770:CDS 35.0%
TGTACCTGAATGAAAGAAAG+AGG + chr7_3:82972043-82972062 None:intergenic 35.0%
CATATGATCTGTTGCAATGT+AGG + chr7_3:82972072-82972091 None:intergenic 35.0%
! AATGATAATGATGAGTTGGG+TGG + chr7_3:82972373-82972392 None:intergenic 35.0%
AAAGTGACAGTTTGTGTTTG+TGG - chr7_3:82972498-82972517 Msa1130770:five_prime_UTR 35.0%
AAGTGACAGTTTGTGTTTGT+GGG - chr7_3:82972499-82972518 Msa1130770:five_prime_UTR 35.0%
!! TGTGGGTGTTGAATATTGAT+AGG - chr7_3:82972516-82972535 Msa1130770:five_prime_UTR 35.0%
TGAATATTGATAGGTCCAGT+TGG - chr7_3:82972525-82972544 Msa1130770:five_prime_UTR 35.0%
AATGGATCACCATCACAGTT+TGG - chr7_3:82971466-82971485 Msa1130770:intron 40.0%
ATGGATCACCATCACAGTTT+GGG - chr7_3:82971467-82971486 Msa1130770:intron 40.0%
!! ACGCTGACAAAAGTGTTTGT+TGG - chr7_3:82971496-82971515 Msa1130770:CDS 40.0%
!! CTGACAAAAGTGTTTGTTGG+AGG - chr7_3:82971499-82971518 Msa1130770:CDS 40.0%
GAACCAACTGTGATCATCAA+TGG - chr7_3:82971682-82971701 Msa1130770:intron 40.0%
AAGAGAAGCGATATTGCAGT+TGG + chr7_3:82971716-82971735 None:intergenic 40.0%
AACTGCAATATCGCTTCTCT+TGG - chr7_3:82971715-82971734 Msa1130770:intron 40.0%
GCAGGTTCAATGGTATTATC+CGG - chr7_3:82971807-82971826 Msa1130770:CDS 40.0%
GTTCAATGGTATTATCCGGT+GGG - chr7_3:82971811-82971830 Msa1130770:CDS 40.0%
!! TGATGATGGAATATTGGGGA+AGG + chr7_3:82971850-82971869 None:intergenic 40.0%
!! GCGTGATGATGATGGAATAT+TGG + chr7_3:82971856-82971875 None:intergenic 40.0%
AGAGAGAGAGAGAGAGATAT+GGG - chr7_3:82971950-82971969 Msa1130770:intron 40.0%
!! TGGGACATCCTTGTTTGTTT+TGG - chr7_3:82971969-82971988 Msa1130770:intron 40.0%
!! GGGACATCCTTGTTTGTTTT+GGG - chr7_3:82971970-82971989 Msa1130770:intron 40.0%
CCTTTCACCCAAAACAAACA+AGG + chr7_3:82971980-82971999 None:intergenic 40.0%
!!! CCTTGTTTGTTTTGGGTGAA+AGG - chr7_3:82971977-82971996 Msa1130770:intron 40.0%
TGATCTGTTGCAATGTAGGT+GGG + chr7_3:82972068-82972087 None:intergenic 40.0%
ATGATCTGTTGCAATGTAGG+TGG + chr7_3:82972069-82972088 None:intergenic 40.0%
AAACTGAGCTGCTATGGAAT+GGG - chr7_3:82972218-82972237 Msa1130770:CDS 40.0%
TAACCTGTTGTAGTAGGACT+AGG + chr7_3:82972413-82972432 None:intergenic 40.0%
TGAATGCTTCAAAAGGGTAG+TGG - chr7_3:82972554-82972573 Msa1130770:five_prime_UTR 40.0%
AATGGATCACCATCACAGTT+TGG - chr7_3:82971466-82971485 Msa1130770:intron 40.0%
ATGGATCACCATCACAGTTT+GGG - chr7_3:82971467-82971486 Msa1130770:intron 40.0%
!! ACGCTGACAAAAGTGTTTGT+TGG - chr7_3:82971496-82971515 Msa1130770:CDS 40.0%
!! CTGACAAAAGTGTTTGTTGG+AGG - chr7_3:82971499-82971518 Msa1130770:CDS 40.0%
GAACCAACTGTGATCATCAA+TGG - chr7_3:82971682-82971701 Msa1130770:intron 40.0%
AAGAGAAGCGATATTGCAGT+TGG + chr7_3:82971716-82971735 None:intergenic 40.0%
AACTGCAATATCGCTTCTCT+TGG - chr7_3:82971715-82971734 Msa1130770:intron 40.0%
GCAGGTTCAATGGTATTATC+CGG - chr7_3:82971807-82971826 Msa1130770:CDS 40.0%
GTTCAATGGTATTATCCGGT+GGG - chr7_3:82971811-82971830 Msa1130770:CDS 40.0%
!! TGATGATGGAATATTGGGGA+AGG + chr7_3:82971850-82971869 None:intergenic 40.0%
!! GCGTGATGATGATGGAATAT+TGG + chr7_3:82971856-82971875 None:intergenic 40.0%
AGAGAGAGAGAGAGAGATAT+GGG - chr7_3:82971950-82971969 Msa1130770:intron 40.0%
!! TGGGACATCCTTGTTTGTTT+TGG - chr7_3:82971969-82971988 Msa1130770:intron 40.0%
!! GGGACATCCTTGTTTGTTTT+GGG - chr7_3:82971970-82971989 Msa1130770:intron 40.0%
CCTTTCACCCAAAACAAACA+AGG + chr7_3:82971980-82971999 None:intergenic 40.0%
!!! CCTTGTTTGTTTTGGGTGAA+AGG - chr7_3:82971977-82971996 Msa1130770:intron 40.0%
TGATCTGTTGCAATGTAGGT+GGG + chr7_3:82972068-82972087 None:intergenic 40.0%
ATGATCTGTTGCAATGTAGG+TGG + chr7_3:82972069-82972088 None:intergenic 40.0%
AAACTGAGCTGCTATGGAAT+GGG - chr7_3:82972218-82972237 Msa1130770:CDS 40.0%
TAACCTGTTGTAGTAGGACT+AGG + chr7_3:82972413-82972432 None:intergenic 40.0%
TGAATGCTTCAAAAGGGTAG+TGG - chr7_3:82972554-82972573 Msa1130770:five_prime_UTR 40.0%
AGCAGCAACAGCAACAACAA+TGG - chr7_3:82971448-82971467 Msa1130770:intron 45.0%
TGGATCACCATCACAGTTTG+GGG - chr7_3:82971468-82971487 Msa1130770:intron 45.0%
! CGACCATTGATGATCACAGT+TGG + chr7_3:82971688-82971707 None:intergenic 45.0%
AAGCGATATTGCAGTTGGCT+CGG + chr7_3:82971711-82971730 None:intergenic 45.0%
TTATGGGAGAAGACCTTGGA+CGG + chr7_3:82971747-82971766 None:intergenic 45.0%
GAAGTTATGGGAGAAGACCT+TGG + chr7_3:82971751-82971770 None:intergenic 45.0%
GGAGAAGGAGGAGAAGTTAT+GGG + chr7_3:82971763-82971782 None:intergenic 45.0%
TGGAGAAGGAGGAGAAGTTA+TGG + chr7_3:82971764-82971783 None:intergenic 45.0%
AATACCATTGAACCTGCTGC+TGG + chr7_3:82971804-82971823 None:intergenic 45.0%
GGTTCAATGGTATTATCCGG+TGG - chr7_3:82971810-82971829 Msa1130770:CDS 45.0%
! AATATTGGGGAAGGAGGTGT+GGG + chr7_3:82971841-82971860 None:intergenic 45.0%
TGATGGAATATTGGGGAAGG+AGG + chr7_3:82971847-82971866 None:intergenic 45.0%
CATATCTCTCTCTCTCTCTC+TGG + chr7_3:82971951-82971970 None:intergenic 45.0%
CAGAGAGAGAGAGAGAGATA+TGG - chr7_3:82971949-82971968 Msa1130770:intron 45.0%
ATGCAGAAACTGAGCTGCTA+TGG - chr7_3:82972212-82972231 Msa1130770:CDS 45.0%
GAAACTGAGCTGCTATGGAA+TGG - chr7_3:82972217-82972236 Msa1130770:CDS 45.0%
! TGAGTTGGGTGGAAGATTTG+AGG + chr7_3:82972362-82972381 None:intergenic 45.0%
!! TAGGACTAGGAGTGATGGAT+GGG + chr7_3:82972400-82972419 None:intergenic 45.0%
TGTAGTAGGACTAGGAGTGA+TGG + chr7_3:82972405-82972424 None:intergenic 45.0%
ACTCCTAGTCCTACTACAAC+AGG - chr7_3:82972407-82972426 Msa1130770:CDS 45.0%
ATTGATAGGTCCAGTTGGCA+CGG - chr7_3:82972530-82972549 Msa1130770:five_prime_UTR 45.0%
CACGGGTGAATGCTTCAAAA+GGG - chr7_3:82972548-82972567 Msa1130770:five_prime_UTR 45.0%
AGCAGCAACAGCAACAACAA+TGG - chr7_3:82971448-82971467 Msa1130770:intron 45.0%
TGGATCACCATCACAGTTTG+GGG - chr7_3:82971468-82971487 Msa1130770:intron 45.0%
! CGACCATTGATGATCACAGT+TGG + chr7_3:82971688-82971707 None:intergenic 45.0%
AAGCGATATTGCAGTTGGCT+CGG + chr7_3:82971711-82971730 None:intergenic 45.0%
TTATGGGAGAAGACCTTGGA+CGG + chr7_3:82971747-82971766 None:intergenic 45.0%
GAAGTTATGGGAGAAGACCT+TGG + chr7_3:82971751-82971770 None:intergenic 45.0%
GGAGAAGGAGGAGAAGTTAT+GGG + chr7_3:82971763-82971782 None:intergenic 45.0%
TGGAGAAGGAGGAGAAGTTA+TGG + chr7_3:82971764-82971783 None:intergenic 45.0%
AATACCATTGAACCTGCTGC+TGG + chr7_3:82971804-82971823 None:intergenic 45.0%
GGTTCAATGGTATTATCCGG+TGG - chr7_3:82971810-82971829 Msa1130770:CDS 45.0%
! AATATTGGGGAAGGAGGTGT+GGG + chr7_3:82971841-82971860 None:intergenic 45.0%
TGATGGAATATTGGGGAAGG+AGG + chr7_3:82971847-82971866 None:intergenic 45.0%
CATATCTCTCTCTCTCTCTC+TGG + chr7_3:82971951-82971970 None:intergenic 45.0%
CAGAGAGAGAGAGAGAGATA+TGG - chr7_3:82971949-82971968 Msa1130770:intron 45.0%
ATGCAGAAACTGAGCTGCTA+TGG - chr7_3:82972212-82972231 Msa1130770:CDS 45.0%
GAAACTGAGCTGCTATGGAA+TGG - chr7_3:82972217-82972236 Msa1130770:CDS 45.0%
! TGAGTTGGGTGGAAGATTTG+AGG + chr7_3:82972362-82972381 None:intergenic 45.0%
!! TAGGACTAGGAGTGATGGAT+GGG + chr7_3:82972400-82972419 None:intergenic 45.0%
TGTAGTAGGACTAGGAGTGA+TGG + chr7_3:82972405-82972424 None:intergenic 45.0%
ACTCCTAGTCCTACTACAAC+AGG - chr7_3:82972407-82972426 Msa1130770:CDS 45.0%
ATTGATAGGTCCAGTTGGCA+CGG - chr7_3:82972530-82972549 Msa1130770:five_prime_UTR 45.0%
CACGGGTGAATGCTTCAAAA+GGG - chr7_3:82972548-82972567 Msa1130770:five_prime_UTR 45.0%
!!! TTAATTTTAATTTGAAAAAA+TGG - chr7_3:82972181-82972200 Msa1130770:CDS 5.0%
!!! AGTTTAATTTATAAATAAAA+GGG + chr7_3:82972446-82972465 None:intergenic 5.0%
!!! AAGTTTAATTTATAAATAAA+AGG + chr7_3:82972447-82972466 None:intergenic 5.0%
!!! TTAATTTTAATTTGAAAAAA+TGG - chr7_3:82972181-82972200 Msa1130770:CDS 5.0%
!!! AGTTTAATTTATAAATAAAA+GGG + chr7_3:82972446-82972465 None:intergenic 5.0%
!!! AAGTTTAATTTATAAATAAA+AGG + chr7_3:82972447-82972466 None:intergenic 5.0%
GTTGTGTCCCCAAACTGTGA+TGG + chr7_3:82971478-82971497 None:intergenic 50.0%
! TGTTTGTTGGAGGTCTTGCC+TGG - chr7_3:82971509-82971528 Msa1130770:CDS 50.0%
! GTTTGTTGGAGGTCTTGCCT+GGG - chr7_3:82971510-82971529 Msa1130770:CDS 50.0%
TGTGTCTTTCGGAGTTTCCC+AGG + chr7_3:82971530-82971549 None:intergenic 50.0%
AAGGTTACCGGCAGATCCAA+AGG - chr7_3:82971607-82971626 Msa1130770:CDS 50.0%
TCCATAGCCTTTGGATCTGC+CGG + chr7_3:82971617-82971636 None:intergenic 50.0%
AGATGCAGAGGCTGCAAAGA+AGG - chr7_3:82971651-82971670 Msa1130770:CDS 50.0%
GAATATTGGGGAAGGAGGTG+TGG + chr7_3:82971842-82971861 None:intergenic 50.0%
! AAGGAAGGGCGTGATGATGA+TGG + chr7_3:82971864-82971883 None:intergenic 50.0%
CATCACGCCCTTCCTTTCTA+CGG - chr7_3:82971868-82971887 Msa1130770:intron 50.0%
ATCACGCCCTTCCTTTCTAC+GGG - chr7_3:82971869-82971888 Msa1130770:intron 50.0%
TGAGCTGCTATGGAATGGGT+GGG - chr7_3:82972222-82972241 Msa1130770:CDS 50.0%
ATCTGTAGACAGGAGGAGCA+GGG + chr7_3:82972307-82972326 None:intergenic 50.0%
TCGGTTGATCTGTAGACAGG+AGG + chr7_3:82972314-82972333 None:intergenic 50.0%
TCCTGTCTACAGATCAACCG+AGG - chr7_3:82972313-82972332 Msa1130770:CDS 50.0%
CTACAGATCAACCGAGGCTA+TGG - chr7_3:82972319-82972338 Msa1130770:CDS 50.0%
! GGTGGAAGATTTGAGGTGGA+GGG + chr7_3:82972355-82972374 None:intergenic 50.0%
GTTGGGTGGAAGATTTGAGG+TGG + chr7_3:82972359-82972378 None:intergenic 50.0%
!! AGGACTAGGAGTGATGGATG+GGG + chr7_3:82972399-82972418 None:intergenic 50.0%
! GTAGGACTAGGAGTGATGGA+TGG + chr7_3:82972401-82972420 None:intergenic 50.0%
TTGATAGGTCCAGTTGGCAC+GGG - chr7_3:82972531-82972550 Msa1130770:five_prime_UTR 50.0%
GCACGGGTGAATGCTTCAAA+AGG - chr7_3:82972547-82972566 Msa1130770:five_prime_UTR 50.0%
GTTGTGTCCCCAAACTGTGA+TGG + chr7_3:82971478-82971497 None:intergenic 50.0%
! TGTTTGTTGGAGGTCTTGCC+TGG - chr7_3:82971509-82971528 Msa1130770:CDS 50.0%
! GTTTGTTGGAGGTCTTGCCT+GGG - chr7_3:82971510-82971529 Msa1130770:CDS 50.0%
TGTGTCTTTCGGAGTTTCCC+AGG + chr7_3:82971530-82971549 None:intergenic 50.0%
AAGGTTACCGGCAGATCCAA+AGG - chr7_3:82971607-82971626 Msa1130770:CDS 50.0%
TCCATAGCCTTTGGATCTGC+CGG + chr7_3:82971617-82971636 None:intergenic 50.0%
AGATGCAGAGGCTGCAAAGA+AGG - chr7_3:82971651-82971670 Msa1130770:CDS 50.0%
GAATATTGGGGAAGGAGGTG+TGG + chr7_3:82971842-82971861 None:intergenic 50.0%
! AAGGAAGGGCGTGATGATGA+TGG + chr7_3:82971864-82971883 None:intergenic 50.0%
CATCACGCCCTTCCTTTCTA+CGG - chr7_3:82971868-82971887 Msa1130770:intron 50.0%
ATCACGCCCTTCCTTTCTAC+GGG - chr7_3:82971869-82971888 Msa1130770:intron 50.0%
TGAGCTGCTATGGAATGGGT+GGG - chr7_3:82972222-82972241 Msa1130770:CDS 50.0%
ATCTGTAGACAGGAGGAGCA+GGG + chr7_3:82972307-82972326 None:intergenic 50.0%
TCGGTTGATCTGTAGACAGG+AGG + chr7_3:82972314-82972333 None:intergenic 50.0%
TCCTGTCTACAGATCAACCG+AGG - chr7_3:82972313-82972332 Msa1130770:CDS 50.0%
CTACAGATCAACCGAGGCTA+TGG - chr7_3:82972319-82972338 Msa1130770:CDS 50.0%
! GGTGGAAGATTTGAGGTGGA+GGG + chr7_3:82972355-82972374 None:intergenic 50.0%
GTTGGGTGGAAGATTTGAGG+TGG + chr7_3:82972359-82972378 None:intergenic 50.0%
!! AGGACTAGGAGTGATGGATG+GGG + chr7_3:82972399-82972418 None:intergenic 50.0%
! GTAGGACTAGGAGTGATGGA+TGG + chr7_3:82972401-82972420 None:intergenic 50.0%
TTGATAGGTCCAGTTGGCAC+GGG - chr7_3:82972531-82972550 Msa1130770:five_prime_UTR 50.0%
GCACGGGTGAATGCTTCAAA+AGG - chr7_3:82972547-82972566 Msa1130770:five_prime_UTR 50.0%
ACCGGCAGATCCAAAGGCTA+TGG - chr7_3:82971613-82971632 Msa1130770:CDS 55.0%
! CGGTGGATCTTTGGAGAAGG+AGG + chr7_3:82971775-82971794 None:intergenic 55.0%
! CTGCGGTGGATCTTTGGAGA+AGG + chr7_3:82971778-82971797 None:intergenic 55.0%
TGGTTGCTGCGGTGGATCTT+TGG + chr7_3:82971784-82971803 None:intergenic 55.0%
GCAACCAGCAGCAGGTTCAA+TGG - chr7_3:82971797-82971816 Msa1130770:CDS 55.0%
CTGAGCTGCTATGGAATGGG+TGG - chr7_3:82972221-82972240 Msa1130770:CDS 55.0%
GAGCTGCTATGGAATGGGTG+GGG - chr7_3:82972223-82972242 Msa1130770:CDS 55.0%
AGCTGCTATGGAATGGGTGG+GGG - chr7_3:82972224-82972243 Msa1130770:CDS 55.0%
! GCAGGGTGGTGGTACATGAT+TGG + chr7_3:82972290-82972309 None:intergenic 55.0%
GATCTGTAGACAGGAGGAGC+AGG + chr7_3:82972308-82972327 None:intergenic 55.0%
GCCTCGGTTGATCTGTAGAC+AGG + chr7_3:82972317-82972336 None:intergenic 55.0%
ATCAACCGAGGCTATGGCCA+TGG - chr7_3:82972325-82972344 Msa1130770:CDS 55.0%
TCAACCGAGGCTATGGCCAT+GGG - chr7_3:82972326-82972345 Msa1130770:CDS 55.0%
! GGGTGGAAGATTTGAGGTGG+AGG + chr7_3:82972356-82972375 None:intergenic 55.0%
AAGCATTCACCCGTGCCAAC+TGG + chr7_3:82972543-82972562 None:intergenic 55.0%
ACCGGCAGATCCAAAGGCTA+TGG - chr7_3:82971613-82971632 Msa1130770:CDS 55.0%
! CGGTGGATCTTTGGAGAAGG+AGG + chr7_3:82971775-82971794 None:intergenic 55.0%
! CTGCGGTGGATCTTTGGAGA+AGG + chr7_3:82971778-82971797 None:intergenic 55.0%
TGGTTGCTGCGGTGGATCTT+TGG + chr7_3:82971784-82971803 None:intergenic 55.0%
GCAACCAGCAGCAGGTTCAA+TGG - chr7_3:82971797-82971816 Msa1130770:CDS 55.0%
CTGAGCTGCTATGGAATGGG+TGG - chr7_3:82972221-82972240 Msa1130770:CDS 55.0%
GAGCTGCTATGGAATGGGTG+GGG - chr7_3:82972223-82972242 Msa1130770:CDS 55.0%
AGCTGCTATGGAATGGGTGG+GGG - chr7_3:82972224-82972243 Msa1130770:CDS 55.0%
! GCAGGGTGGTGGTACATGAT+TGG + chr7_3:82972290-82972309 None:intergenic 55.0%
GATCTGTAGACAGGAGGAGC+AGG + chr7_3:82972308-82972327 None:intergenic 55.0%
GCCTCGGTTGATCTGTAGAC+AGG + chr7_3:82972317-82972336 None:intergenic 55.0%
ATCAACCGAGGCTATGGCCA+TGG - chr7_3:82972325-82972344 Msa1130770:CDS 55.0%
TCAACCGAGGCTATGGCCAT+GGG - chr7_3:82972326-82972345 Msa1130770:CDS 55.0%
! GGGTGGAAGATTTGAGGTGG+AGG + chr7_3:82972356-82972375 None:intergenic 55.0%
AAGCATTCACCCGTGCCAAC+TGG + chr7_3:82972543-82972562 None:intergenic 55.0%
GGCTGCAAAGAAGGCTTGCG+AGG - chr7_3:82971660-82971679 Msa1130770:CDS 60.0%
! GAACCTGCTGCTGGTTGCTG+CGG + chr7_3:82971795-82971814 None:intergenic 60.0%
GCACCCACAATAGCCTGCCT+CGG + chr7_3:82972263-82972282 None:intergenic 60.0%
TGTAGACAGGAGGAGCAGGG+TGG + chr7_3:82972304-82972323 None:intergenic 60.0%
GACACCCATGGCCATAGCCT+CGG + chr7_3:82972333-82972352 None:intergenic 60.0%
TTGAGGTGGAGGGACACCCA+TGG + chr7_3:82972345-82972364 None:intergenic 60.0%
GGCTGCAAAGAAGGCTTGCG+AGG - chr7_3:82971660-82971679 Msa1130770:CDS 60.0%
! GAACCTGCTGCTGGTTGCTG+CGG + chr7_3:82971795-82971814 None:intergenic 60.0%
GCACCCACAATAGCCTGCCT+CGG + chr7_3:82972263-82972282 None:intergenic 60.0%
TGTAGACAGGAGGAGCAGGG+TGG + chr7_3:82972304-82972323 None:intergenic 60.0%
GACACCCATGGCCATAGCCT+CGG + chr7_3:82972333-82972352 None:intergenic 60.0%
TTGAGGTGGAGGGACACCCA+TGG + chr7_3:82972345-82972364 None:intergenic 60.0%
!! CTCTTGGTGCTCGCCGTCCA+AGG - chr7_3:82971731-82971750 Msa1130770:intron 65.0%
! GGAGGTGTGGGTGTTCCCAC+CGG + chr7_3:82971829-82971848 None:intergenic 65.0%
CCACAATAGCCTGCCTCGGC+GGG + chr7_3:82972259-82972278 None:intergenic 65.0%
CCCACAATAGCCTGCCTCGG+CGG + chr7_3:82972260-82972279 None:intergenic 65.0%
CCGCCGAGGCAGGCTATTGT+GGG - chr7_3:82972257-82972276 Msa1130770:CDS 65.0%
AGACAGGAGGAGCAGGGTGG+TGG + chr7_3:82972301-82972320 None:intergenic 65.0%
!! CTCTTGGTGCTCGCCGTCCA+AGG - chr7_3:82971731-82971750 Msa1130770:intron 65.0%
! GGAGGTGTGGGTGTTCCCAC+CGG + chr7_3:82971829-82971848 None:intergenic 65.0%
CCACAATAGCCTGCCTCGGC+GGG + chr7_3:82972259-82972278 None:intergenic 65.0%
CCCACAATAGCCTGCCTCGG+CGG + chr7_3:82972260-82972279 None:intergenic 65.0%
CCGCCGAGGCAGGCTATTGT+GGG - chr7_3:82972257-82972276 Msa1130770:CDS 65.0%
AGACAGGAGGAGCAGGGTGG+TGG + chr7_3:82972301-82972320 None:intergenic 65.0%
! CCTGCTGCTGGTTGCTGCGG+TGG + chr7_3:82971792-82971811 None:intergenic 70.0%
CCACCGCAGCAACCAGCAGC+AGG - chr7_3:82971789-82971808 Msa1130770:CDS 70.0%
CTACGTGTACCCGCCGAGGC+AGG - chr7_3:82972247-82972266 Msa1130770:CDS 70.0%
CCCGCCGAGGCAGGCTATTG+TGG - chr7_3:82972256-82972275 Msa1130770:CDS 70.0%
! CCTGCTGCTGGTTGCTGCGG+TGG + chr7_3:82971792-82971811 None:intergenic 70.0%
CCACCGCAGCAACCAGCAGC+AGG - chr7_3:82971789-82971808 Msa1130770:CDS 70.0%
CTACGTGTACCCGCCGAGGC+AGG - chr7_3:82972247-82972266 Msa1130770:CDS 70.0%
CCCGCCGAGGCAGGCTATTG+TGG - chr7_3:82972256-82972275 Msa1130770:CDS 70.0%
GGGGCTACGTGTACCCGCCG+AGG - chr7_3:82972243-82972262 Msa1130770:CDS 75.0%
GGGGCTACGTGTACCCGCCG+AGG - chr7_3:82972243-82972262 Msa1130770:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82971319 82972581 82971319 ID=Msa1130770;Name=Msa1130770
chr7_3 mRNA 82971319 82972581 82971319 ID=Msa1130770-mRNA-1;Parent=Msa1130770;Name=Msa1130770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=114|0.66|0.5|1|1|1|4|0|256
chr7_3 exon 82971319 82971362 82971319 ID=Msa1130770-mRNA-1:exon:24568;Parent=Msa1130770-mRNA-1
chr7_3 exon 82971472 82971682 82971472 ID=Msa1130770-mRNA-1:exon:24567;Parent=Msa1130770-mRNA-1
chr7_3 exon 82971785 82971842 82971785 ID=Msa1130770-mRNA-1:exon:24566;Parent=Msa1130770-mRNA-1
chr7_3 exon 82972010 82972581 82972010 ID=Msa1130770-mRNA-1:exon:24565;Parent=Msa1130770-mRNA-1
chr7_3 five_prime_UTR 82972468 82972581 82972468 ID=Msa1130770-mRNA-1:five_prime_utr;Parent=Msa1130770-mRNA-1
chr7_3 CDS 82972010 82972467 82972010 ID=Msa1130770-mRNA-1:cds;Parent=Msa1130770-mRNA-1
chr7_3 CDS 82971785 82971842 82971785 ID=Msa1130770-mRNA-1:cds;Parent=Msa1130770-mRNA-1
chr7_3 CDS 82971472 82971682 82971472 ID=Msa1130770-mRNA-1:cds;Parent=Msa1130770-mRNA-1
chr7_3 CDS 82971319 82971362 82971319 ID=Msa1130770-mRNA-1:cds;Parent=Msa1130770-mRNA-1
Gene Sequence

>Msa1130770

ATGACGATGATGGGCAGCAGCAACAGCAACAACAATGGATCACCATCACAGTTTGGGGACACAACGCTGACAAAAGTGTTTGTTGGAGGTCTTGCCTGGGAAACTCCGAAAGACACATTAAGAGAACACTTTGAAAAATACGGAGACATCCTTGAAGCTGTCATAATTTCTGATAAGGTTACCGGCAGATCCAAAGGCTATGGATTTGTAACATTCAAAGATGCAGAGGCTGCAAAGAAGGCTTGCGAGGAACCAACTGTGATCATCAATGGTCGCCGAGCCAACTGCAATATCGCTTCTCTTGGTGCTCGCCGTCCAAGGTCTTCTCCCATAACTTCTCCTCCTTCTCCAAAGATCCACCGCAGCAACCAGCAGCAGGTTCAATGGTATTATCCGGTGGGAACACCCACACCTCCTTCCCCAATATTCCATCATCATCACGCCCTTCCTTTCTACGGGTACACGCCCACCTACATTGCAACAGATCATATGAATTACAACTGCAATTACAATCAGAAACTGAGCTGCTATGGAATGGGTGGGGGCTACGTGTACCCGCCGAGGCAGGCTATTGTGGGTGCGATGCCAATCATGTACCACCACCCTGCTCCTCCTGTCTACAGATCAACCGAGGCTATGGCCATGGGTGTCCCTCCACCTCAAATCTTCCACCCAACTCATCATTATCATTATTCCCCATCCATCACTCCTAGTCCTACTACAACAGGTCCAGTTGGCACGGGTGAATGCTTCAAAAGGGTAGTGGTCTGA
Protein sequence

>Msa1130770

MTMMGSSNSNNNGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDAEAAKKACEEPTVIINGRRANCNIASLGARRPRSSPITSPPSPKIHRSNQQQVQWYYPVGTPTPPSPIFHHHHALPFYGYTPTYIATDHMNYNCNYNQKLSCYGMGGGYVYPPRQAIVGAMPIMYHHPAPPVYRSTEAMAMGVPPPQIFHPTHHYHYSPSITPSPTTTGPVGTGECFKRVVV*