AlfalfaGEDB | Msa0029730

M. sativa cultivar zhongmu-4 / Msa0029730

KEGG: -
GO: -
PFAM: PF05514.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021980	Msa0029730	-0.811875	5.623928e-51	-8.615850e-47
Msa0025690	Msa0029730	-0.828788	7.398536e-55	-8.615850e-47
Msa0029730	Msa0037660	0.812148	4.904287e-51	-8.615850e-47
Msa0029730	Msa0040420	-0.802790	4.745399e-49	-8.615850e-47
Msa0029730	Msa0050320	-0.814738	1.321961e-51	-8.615850e-47
Msa0029730	Msa0050530	0.802685	4.989656e-49	-8.615850e-47
Msa0029730	Msa0071640	0.826095	3.273033e-54	-8.615850e-47
Msa0029730	Msa0089540	0.800052	1.726605e-48	-8.615850e-47
Msa0029730	Msa0099090	-0.804503	2.093484e-49	-8.615850e-47
Msa0029730	Msa0120320	-0.801459	8.914316e-49	-8.615850e-47
Msa0029730	Msa0131090	-0.834660	2.635924e-56	-8.615850e-47
Msa0029730	Msa0143280	-0.823658	1.230042e-53	-8.615850e-47
Msa0029730	Msa0147540	-0.808267	3.368263e-50	-8.615850e-47
Msa0029730	Msa0154720	-0.815597	8.518889e-52	-8.615850e-47
Msa0029730	Msa0160650	-0.825325	4.985464e-54	-8.615850e-47
Msa0029730	Msa0163530	-0.800776	1.229527e-48	-8.615850e-47
Msa0029730	Msa0169710	0.856670	2.749762e-62	-8.615850e-47
Msa0029730	Msa0183840	0.841011	6.152914e-58	-8.615850e-47
Msa0029730	Msa0188740	0.808142	3.581588e-50	-8.615850e-47
Msa0029730	Msa0192050	0.803937	2.746978e-49	-8.615850e-47
Msa0029730	Msa0195030	0.847932	8.456324e-60	-8.615850e-47
Msa0029730	Msa0197920	0.804752	1.857991e-49	-8.615850e-47
Msa0029730	Msa0237180	0.854984	8.552793e-62	-8.615850e-47
Msa0029730	Msa0266380	-0.830329	3.122094e-55	-8.615850e-47
Msa0029730	Msa0270160	0.802641	5.095703e-49	-8.615850e-47
Msa0029730	Msa0274940	0.859602	3.692166e-63	-8.615850e-47
Msa0029730	Msa0315660	0.860759	1.650387e-63	-8.615850e-47
Msa0029730	Msa0341860	-0.832651	8.371618e-56	-8.615850e-47
Msa0029730	Msa0370350	-0.808959	2.396406e-50	-8.615850e-47
Msa0029730	Msa0372100	0.805780	1.131319e-49	-8.615850e-47
Msa0029730	Msa0372990	-0.812874	3.402769e-51	-8.615850e-47
Msa0029730	Msa0378620	-0.806268	8.934086e-50	-8.615850e-47
Msa0029730	Msa0380590	0.836090	1.146822e-56	-8.615850e-47
Msa0029730	Msa0387890	0.815853	7.472589e-52	-8.615850e-47
Msa0029730	Msa0388520	0.816303	5.927795e-52	-8.615850e-47
Msa0029730	Msa0416210	0.801179	1.017487e-48	-8.615850e-47
Msa0029730	Msa0432260	-0.817415	3.336688e-52	-8.615850e-47
Msa0029730	Msa0467250	0.813327	2.707070e-51	-8.615850e-47
Msa0029730	Msa0467710	-0.800139	1.657770e-48	-8.615850e-47
Msa0029730	Msa0480940	0.830122	3.508113e-55	-8.615850e-47
Msa0029730	Msa0500420	0.839520	1.508689e-57	-8.615850e-47
Msa0029730	Msa0521100	-0.810196	1.299857e-50	-8.615850e-47
Msa0029730	Msa0540160	-0.809414	1.914800e-50	-8.615850e-47
Msa0029730	Msa0555510	-0.807051	6.104359e-50	-8.615850e-47
Msa0029730	Msa0608940	-0.826274	2.967588e-54	-8.615850e-47
Msa0029730	Msa0612880	-0.800598	1.337269e-48	-8.615850e-47
Msa0029730	Msa0621190	0.802377	5.773838e-49	-8.615850e-47
Msa0029730	Msa0623360	-0.814920	1.205012e-51	-8.615850e-47
Msa0029730	Msa0649530	-0.823894	1.083283e-53	-8.615850e-47
Msa0029730	Msa0659020	-0.805016	1.636156e-49	-8.615850e-47
Msa0029730	Msa0691740	-0.827031	1.957886e-54	-8.615850e-47
Msa0029730	Msa0790450	0.808657	2.780955e-50	-8.615850e-47
Msa0029730	Msa0797010	-0.806785	6.947630e-50	-8.615850e-47
Msa0029730	Msa0846900	0.837151	6.155949e-57	-8.615850e-47
Msa0029730	Msa0852090	-0.811302	7.493944e-51	-8.615850e-47
Msa0029730	Msa0861480	-0.812223	4.724597e-51	-8.615850e-47
Msa0029730	Msa0880050	0.801735	7.825776e-49	-8.615850e-47
Msa0029730	Msa0984820	-0.804702	1.902948e-49	-8.615850e-47
Msa0029730	Msa1025200	0.803853	2.858395e-49	-8.615850e-47
Msa0029730	Msa1025220	0.820402	6.992541e-53	-8.615850e-47
Msa0029730	Msa1031530	-0.836266	1.035129e-56	-8.615850e-47
Msa0029730	Msa1043020	-0.808115	3.629742e-50	-8.615850e-47
Msa0029730	Msa1071310	-0.805376	1.375350e-49	-8.615850e-47
Msa0029730	Msa1088260	0.802978	4.340609e-49	-8.615850e-47
Msa0029730	Msa1096520	-0.803797	2.937260e-49	-8.615850e-47
Msa0029730	Msa1096570	-0.801193	1.010691e-48	-8.615850e-47
Msa0029730	Msa1102090	0.826434	2.718377e-54	-8.615850e-47
Msa0029730	Msa1124980	0.802710	4.930732e-49	-8.615850e-47
Msa0029730	Msa1125450	-0.824787	6.680177e-54	-8.615850e-47
Msa0029730	Msa1134740	0.827049	1.939317e-54	-8.615850e-47
Msa0029730	Msa1136890	-0.809530	1.808214e-50	-8.615850e-47
Msa0029730	Msa1164570	-0.818477	1.920659e-52	-8.615850e-47
Msa0029730	Msa1167360	0.800027	1.747079e-48	-8.615850e-47
Msa0029730	Msa1181400	-0.810943	8.964433e-51	-8.615850e-47
Msa0029730	Msa1182400	-0.811350	7.316828e-51	-8.615850e-47
Msa0029730	Msa1196210	-0.811665	6.250426e-51	-8.615850e-47
Msa0029730	Msa1199750	-0.821473	3.962745e-53	-8.615850e-47
Msa0029730	Msa1207880	0.833944	3.985258e-56	-8.615850e-47
Msa0029730	Msa1225040	0.807657	4.541567e-50	-8.615850e-47
Msa0029730	Msa1230190	-0.810338	1.211156e-50	-8.615850e-47
Msa0029730	Msa1243630	-0.811157	8.056167e-51	-8.615850e-47
Msa0029730	Msa1244220	-0.811178	7.970503e-51	-8.615850e-47
Msa0029730	Msa1258060	0.837936	3.873641e-57	-8.615850e-47
Msa0029730	Msa1263610	-0.812810	3.514808e-51	-8.615850e-47
Msa0029730	Msa1272770	-0.809226	2.100736e-50	-8.615850e-47
Msa0029730	Msa1279310	-0.803795	2.939667e-49	-8.615850e-47
Msa0029730	Msa1286950	-0.819777	9.719895e-53	-8.615850e-47
Msa0029730	Msa1295220	-0.800115	1.676910e-48	-8.615850e-47
Msa0029730	Msa1302540	0.803958	2.718804e-49	-8.615850e-47
Msa0029730	Msa1308460	-0.818548	1.850350e-52	-8.615850e-47
Msa0029730	Msa1319230	-0.809005	2.342860e-50	-8.615850e-47
Msa0029730	Msa1325850	-0.809735	1.633573e-50	-8.615850e-47
Msa0029730	Msa1328600	-0.826828	2.189706e-54	-8.615850e-47
Msa0029730	Msa1347610	0.803416	3.522090e-49	-8.615850e-47
Msa0029730	Msa1349870	0.823842	1.113901e-53	-8.615850e-47
Msa0029730	Msa1386250	-0.818223	2.193157e-52	-8.615850e-47
Msa0029730	Msa1398460	0.828834	7.213985e-55	-8.615850e-47
Msa0029730	Msa1408990	0.827138	1.845745e-54	-8.615850e-47
Msa0029730	Msa1432250	-0.812168	4.854901e-51	-8.615850e-47
Msa0029730	Msa1446510	0.838434	2.881948e-57	-8.615850e-47
Msa0029730	Msa1450560	0.804646	1.955156e-49	-8.615850e-47
Msa0029730	Msa1450780	-0.806277	8.895684e-50	-8.615850e-47
Msa0029730	Msa1450850	-0.814216	1.724649e-51	-8.615850e-47
Msa0029730	Msa1459630	-0.828774	7.458671e-55	-8.615850e-47
Msa0029730	Msa1460530	-0.820214	7.720925e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029730	MtrunA17_Chr1g0186541	98.125	160	3	0	1	160	1	160	2.93e-112	315
Msa0029730	MtrunA17_Chr1g0184251	53.947	152	67	1	1	152	1	149	2.38e-49	156
Msa0029730	MtrunA17_Chr7g0261051	54.362	149	65	1	1	149	1	146	2.06e-48	154

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029730	AT5G43460.2	65.625	160	47	3	1	159	1	153	1.72e-66	199
Msa0029730	AT5G43460.1	65.625	160	47	3	1	159	1	153	1.72e-66	199
Msa0029730	AT1G04340.1	59.627	161	60	2	1	159	1	158	2.27e-62	189
Msa0029730	AT4G14420.1	51.875	160	73	2	1	159	1	157	4.72e-44	143
Msa0029730	AT3G23180.1	31.818	132	66	3	7	130	24	139	1.74e-14	68.6
Msa0029730	AT3G23180.2	31.818	132	66	3	7	130	24	139	1.74e-14	68.6
Msa0029730	AT3G23190.1	36.000	125	57	3	8	129	25	129	1.46e-13	65.9

Find 56 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTTCCCATTGGTCAGATTA+AGG	0.238405	1_1:-55143818	Msa0029730:five_prime_UTR
TAATCGGGACAATTTGATTA+TGG	0.247158	1_1:-55141866	Msa0029730:three_prime_UTR
CATAGAATATTTGATTTAAC+TGG	0.247163	1_1:+55141705	None:intergenic
ATTTAGCAACAAACCGTATT+CGG	0.260958	1_1:+55142164	None:intergenic
GTTGCTAAATGAATTCATTC+AGG	0.310050	1_1:-55142151	Msa0029730:intron
TGTAGAAATCGTACAGAATA+GGG	0.311533	1_1:+55142205	None:intergenic
AATGGGGTTCTTCTCCTTCA+TGG	0.331747	1_1:-55143682	Msa0029730:CDS
TTTGTGTTTGGCAGCACATT+TGG	0.334240	1_1:-55142402	Msa0029730:CDS
ACATAAGTTGCGTTAAAATC+TGG	0.340201	1_1:+55142573	None:intergenic
ATCAAATATTCTATGATGTC+CGG	0.350936	1_1:-55141697	Msa0029730:three_prime_UTR
GGGAATCAATTCCTTTGAAA+AGG	0.377676	1_1:+55142647	None:intergenic
TTTAGCAACAAACCGTATTC+GGG	0.384008	1_1:+55142165	None:intergenic
TTCCTCAAAATCGTGAGCTT+GGG	0.400618	1_1:+55142627	None:intergenic
ATTGTTGTGTTGCTATGTTT+TGG	0.404036	1_1:-55141904	Msa0029730:three_prime_UTR
TTTCCTCAAAATCGTGAGCT+TGG	0.406891	1_1:+55142626	None:intergenic
GCTCTCGGTCACTGTGTTGC+TGG	0.408141	1_1:+55143722	None:intergenic
TTGTAGAAATCGTACAGAAT+AGG	0.422510	1_1:+55142204	None:intergenic
ATCATATTTCTCAAGGGAGT+TGG	0.422933	1_1:-55142435	Msa0029730:CDS
GGAGGAATTCTGTTTGTGTT+TGG	0.431612	1_1:-55142414	Msa0029730:CDS
TAAAATAAAACAAATTGAAC+GGG	0.438955	1_1:+55141735	None:intergenic
TGTGTCTGTTTACTAAGAAC+AGG	0.440592	1_1:-55141934	Msa0029730:three_prime_UTR
TCAAATATTCTATGATGTCC+GGG	0.449157	1_1:-55141696	Msa0029730:three_prime_UTR
GGAATCAATTCCTTTGAAAA+GGG	0.450002	1_1:+55142648	None:intergenic
CACATTTGGATCCTTTCTCT+TGG	0.462378	1_1:-55142388	Msa0029730:intron
GGGACAATTTGATTATGGAT+TGG	0.474611	1_1:-55141861	Msa0029730:three_prime_UTR
ATGGGGTTCTTCTCCTTCAT+GGG	0.477665	1_1:-55143681	Msa0029730:CDS
CTCTCCTTAATCTGACCAAT+GGG	0.478163	1_1:+55143814	None:intergenic
AAACCGTATTCGGGCTTAGT+AGG	0.480706	1_1:+55142174	None:intergenic
TGCCACTATCATATTTCTCA+AGG	0.486755	1_1:-55142442	Msa0029730:CDS
AAAATTTATCCTCCAAATTG+GGG	0.503296	1_1:-55142605	Msa0029730:CDS
TCCCTTGAGAAATATGATAG+TGG	0.507226	1_1:+55142440	None:intergenic
GGAAGCATTTACCAAGAGAA+AGG	0.510396	1_1:+55142377	None:intergenic
TTTAATGAATTTGATGCCAC+TGG	0.511159	1_1:-55142675	Msa0029730:CDS
ATAATTTGGTTCCTTCCCAT+TGG	0.516030	1_1:-55143829	None:intergenic
ATATTTCTCAAGGGAGTTGG+AGG	0.516522	1_1:-55142432	Msa0029730:CDS
CCCTCTTCATCCTCTCCGCA+TGG	0.518155	1_1:-55143641	Msa0029730:CDS
TTACAATTCTGTTGTACTTG+CGG	0.521738	1_1:-55141820	Msa0029730:three_prime_UTR
CTAAAATAAAACAAATTGAA+CGG	0.526829	1_1:+55141734	None:intergenic
AAAGAGAACACGGCCCATGA+AGG	0.535203	1_1:+55143668	None:intergenic
AGACCTACTAAGCCCGAATA+CGG	0.552660	1_1:-55142177	Msa0029730:CDS
GAACGGGATAAAACATTGCA+AGG	0.554980	1_1:+55141751	None:intergenic
GCCATGCGGAGAGGATGAAG+AGG	0.600238	1_1:+55143640	None:intergenic
GCCACTATCATATTTCTCAA+GGG	0.605942	1_1:-55142441	Msa0029730:CDS
AATGAATTTGATGCCACTGG+TGG	0.607390	1_1:-55142672	Msa0029730:CDS
CCTTAATCTGACCAATGGGA+AGG	0.608374	1_1:+55143818	None:intergenic
ACTCTCCTTAATCTGACCAA+TGG	0.608784	1_1:+55143813	None:intergenic
AGAGGGAAGCAAAGAGAACA+CGG	0.609383	1_1:+55143658	None:intergenic
CTTTGAAAAGGGTCCACCAG+TGG	0.612462	1_1:+55142659	None:intergenic
CAATTCCCAGAAAACAGTTG+AGG	0.642642	1_1:-55142001	Msa0029730:CDS
CCATGCGGAGAGGATGAAGA+GGG	0.643032	1_1:+55143641	None:intergenic
GTAGAAATCGTACAGAATAG+GGG	0.648940	1_1:+55142206	None:intergenic
CAAATATTCTATGATGTCCG+GGG	0.649966	1_1:-55141695	None:intergenic
CTGACATCTGCCATGCGGAG+AGG	0.666177	1_1:+55143631	None:intergenic
GAAATCGTACAGAATAGGGG+TGG	0.679436	1_1:+55142209	None:intergenic
AAATTTATCCTCCAAATTGG+GGG	0.685692	1_1:-55142604	Msa0029730:CDS
GAGAACTGACATCTGCCATG+CGG	0.716281	1_1:+55143626	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AGTTTATAATATAACATTTT+AGG	+	chr1_1:55143248-55143267	None:intergenic	10.0%
!!!	AGTTTATAATATAACATTTT+AGG	+	chr1_1:55143248-55143267	None:intergenic	10.0%
!!	TAAAATAAAACAAATTGAAC+GGG	+	chr1_1:55143789-55143808	None:intergenic	15.0%
!!	CTAAAATAAAACAAATTGAA+CGG	+	chr1_1:55143790-55143809	None:intergenic	15.0%
!!	TAAAATAAAACAAATTGAAC+GGG	+	chr1_1:55143789-55143808	None:intergenic	15.0%
!!	CTAAAATAAAACAAATTGAA+CGG	+	chr1_1:55143790-55143809	None:intergenic	15.0%
!!	TAAAACGGAAAAAAGATAAA+AGG	+	chr1_1:55141964-55141983	None:intergenic	20.0%
!!	TCATAAAAACGGAAATAAAA+CGG	+	chr1_1:55141979-55141998	None:intergenic	20.0%
!!	TTAAATTATGCTTTACTTGT+TGG	-	chr1_1:55142134-55142153	Msa0029730:intron	20.0%
!!	TAAATTATGCTTTACTTGTT+GGG	-	chr1_1:55142135-55142154	Msa0029730:intron	20.0%
!!!	ATTTGTTACATAGATTTGTT+AGG	-	chr1_1:55142379-55142398	Msa0029730:intron	20.0%
!!!	TTTGTTACATAGATTTGTTA+GGG	-	chr1_1:55142380-55142399	Msa0029730:intron	20.0%
!!	AAAAATTTATCCTCCAAATT+GGG	-	chr1_1:55142915-55142934	Msa0029730:intron	20.0%
!!!	TCTAATAATGTGTTAACTTT+TGG	-	chr1_1:55143442-55143461	Msa0029730:intron	20.0%
!!!	GAATAGTTGTTTTTGTTAAT+CGG	-	chr1_1:55143639-55143658	Msa0029730:CDS	20.0%
!!!	AATAGTTGTTTTTGTTAATC+GGG	-	chr1_1:55143640-55143659	Msa0029730:CDS	20.0%
!!!	CATAGAATATTTGATTTAAC+TGG	+	chr1_1:55143819-55143838	None:intergenic	20.0%
!!	TAAAACGGAAAAAAGATAAA+AGG	+	chr1_1:55141964-55141983	None:intergenic	20.0%
!!	TCATAAAAACGGAAATAAAA+CGG	+	chr1_1:55141979-55141998	None:intergenic	20.0%
!!	TTAAATTATGCTTTACTTGT+TGG	-	chr1_1:55142134-55142153	Msa0029730:intron	20.0%
!!	TAAATTATGCTTTACTTGTT+GGG	-	chr1_1:55142135-55142154	Msa0029730:intron	20.0%
!!!	ATTTGTTACATAGATTTGTT+AGG	-	chr1_1:55142379-55142398	Msa0029730:intron	20.0%
!!!	TTTGTTACATAGATTTGTTA+GGG	-	chr1_1:55142380-55142399	Msa0029730:intron	20.0%
!!	AAAAATTTATCCTCCAAATT+GGG	-	chr1_1:55142915-55142934	Msa0029730:intron	20.0%
!!!	TCTAATAATGTGTTAACTTT+TGG	-	chr1_1:55143442-55143461	Msa0029730:intron	20.0%
!!!	GAATAGTTGTTTTTGTTAAT+CGG	-	chr1_1:55143639-55143658	Msa0029730:CDS	20.0%
!!!	AATAGTTGTTTTTGTTAATC+GGG	-	chr1_1:55143640-55143659	Msa0029730:CDS	20.0%
!!!	CATAGAATATTTGATTTAAC+TGG	+	chr1_1:55143819-55143838	None:intergenic	20.0%
!	TAGAGAGAGAAAACAAAAAT+GGG	-	chr1_1:55141822-55141841	Msa0029730:three_prime_UTR	25.0%
!!!	TATTTCCGTTTTTATGAATC+TGG	-	chr1_1:55141982-55142001	Msa0029730:CDS	25.0%
!!!	ATTTCCGTTTTTATGAATCT+GGG	-	chr1_1:55141983-55142002	Msa0029730:CDS	25.0%
!	AAAACCCAGATTCATAAAAA+CGG	+	chr1_1:55141990-55142009	None:intergenic	25.0%
!!	AGTTGCTTGTTAATTCATAA+TGG	-	chr1_1:55142225-55142244	Msa0029730:CDS	25.0%
!!	GTTGCTTGTTAATTCATAAT+GGG	-	chr1_1:55142226-55142245	Msa0029730:CDS	25.0%
!	ATTGAAGAAAGGAACTTAAA+AGG	+	chr1_1:55142265-55142284	None:intergenic	25.0%
!	TTCCTTTCTTCAATTTATTG+AGG	-	chr1_1:55142271-55142290	Msa0029730:intron	25.0%
!	ATCCTCAATAAATTGAAGAA+AGG	+	chr1_1:55142276-55142295	None:intergenic	25.0%
!	TGTATCGTAGCAATAAAATT+TGG	+	chr1_1:55142585-55142604	None:intergenic	25.0%
!	ACTAAAATCTTGTCAAACAA+AGG	+	chr1_1:55142757-55142776	None:intergenic	25.0%
!	ATAGAATTTATGTTGTTGCT+AGG	-	chr1_1:55142823-55142842	Msa0029730:intron	25.0%
!	GAAAAATTTATCCTCCAAAT+TGG	-	chr1_1:55142914-55142933	Msa0029730:intron	25.0%
!	AAAATTTATCCTCCAAATTG+GGG	-	chr1_1:55142916-55142935	Msa0029730:intron	25.0%
!	TCAGAAAATTCATAACATAC+AGG	+	chr1_1:55142992-55143011	None:intergenic	25.0%
!	ATCAAATATTCTATGATGTC+CGG	-	chr1_1:55143824-55143843	Msa0029730:five_prime_UTR	25.0%
!	TAGAGAGAGAAAACAAAAAT+GGG	-	chr1_1:55141822-55141841	Msa0029730:three_prime_UTR	25.0%
!!!	TATTTCCGTTTTTATGAATC+TGG	-	chr1_1:55141982-55142001	Msa0029730:CDS	25.0%
!!!	ATTTCCGTTTTTATGAATCT+GGG	-	chr1_1:55141983-55142002	Msa0029730:CDS	25.0%
!	AAAACCCAGATTCATAAAAA+CGG	+	chr1_1:55141990-55142009	None:intergenic	25.0%
!!	AGTTGCTTGTTAATTCATAA+TGG	-	chr1_1:55142225-55142244	Msa0029730:CDS	25.0%
!!	GTTGCTTGTTAATTCATAAT+GGG	-	chr1_1:55142226-55142245	Msa0029730:CDS	25.0%
!	ATTGAAGAAAGGAACTTAAA+AGG	+	chr1_1:55142265-55142284	None:intergenic	25.0%
!	TTCCTTTCTTCAATTTATTG+AGG	-	chr1_1:55142271-55142290	Msa0029730:intron	25.0%
!	ATCCTCAATAAATTGAAGAA+AGG	+	chr1_1:55142276-55142295	None:intergenic	25.0%
!	TGTATCGTAGCAATAAAATT+TGG	+	chr1_1:55142585-55142604	None:intergenic	25.0%
!	ACTAAAATCTTGTCAAACAA+AGG	+	chr1_1:55142757-55142776	None:intergenic	25.0%
!	ATAGAATTTATGTTGTTGCT+AGG	-	chr1_1:55142823-55142842	Msa0029730:intron	25.0%
!	GAAAAATTTATCCTCCAAAT+TGG	-	chr1_1:55142914-55142933	Msa0029730:intron	25.0%
!	AAAATTTATCCTCCAAATTG+GGG	-	chr1_1:55142916-55142935	Msa0029730:intron	25.0%
!	TCAGAAAATTCATAACATAC+AGG	+	chr1_1:55142992-55143011	None:intergenic	25.0%
!	ATCAAATATTCTATGATGTC+CGG	-	chr1_1:55143824-55143843	Msa0029730:five_prime_UTR	25.0%
	CTAGAGAGAGAAAACAAAAA+TGG	-	chr1_1:55141821-55141840	Msa0029730:three_prime_UTR	30.0%
	AGAGAGAGAAAACAAAAATG+GGG	-	chr1_1:55141823-55141842	Msa0029730:three_prime_UTR	30.0%
!!	AGGAGCAATTTTGAAAAGAA+TGG	+	chr1_1:55141944-55141963	None:intergenic	30.0%
	CAGTTACAAGTAAGATTTGT+GGG	+	chr1_1:55142034-55142053	None:intergenic	30.0%
	ACAGTTACAAGTAAGATTTG+TGG	+	chr1_1:55142035-55142054	None:intergenic	30.0%
!!!	GAGTTCTTTTTTATGCTTTG+TGG	-	chr1_1:55142081-55142100	Msa0029730:intron	30.0%
!!!	TTTAGCTGTGTTTTGAAATC+TGG	-	chr1_1:55142320-55142339	Msa0029730:intron	30.0%
	ATCTATGTAACAAATACCGT+TGG	+	chr1_1:55142374-55142393	None:intergenic	30.0%
	TTAGGGTTAATGTATTATCC+TGG	-	chr1_1:55142397-55142416	Msa0029730:CDS	30.0%
!	AACAAAGGTATATGCTACAT+AGG	+	chr1_1:55142742-55142761	None:intergenic	30.0%
	TTTAATGAATTTGATGCCAC+TGG	-	chr1_1:55142846-55142865	Msa0029730:intron	30.0%
!	GGAATCAATTCCTTTGAAAA+GGG	+	chr1_1:55142876-55142895	None:intergenic	30.0%
	AAATTTATCCTCCAAATTGG+GGG	-	chr1_1:55142917-55142936	Msa0029730:intron	30.0%
	ACATAAGTTGCGTTAAAATC+TGG	+	chr1_1:55142951-55142970	None:intergenic	30.0%
	CTGATTGAAATGTTTCATAC+AGG	-	chr1_1:55143043-55143062	Msa0029730:intron	30.0%
	GTTCATTCATAAGCTAATAG+AGG	+	chr1_1:55143168-55143187	None:intergenic	30.0%
	TGAAAGCTACAAAAGTAAAG+AGG	+	chr1_1:55143279-55143298	None:intergenic	30.0%
	TGTAGAAATCGTACAGAATA+GGG	+	chr1_1:55143319-55143338	None:intergenic	30.0%
	TTGTAGAAATCGTACAGAAT+AGG	+	chr1_1:55143320-55143339	None:intergenic	30.0%
	ATTTAGCAACAAACCGTATT+CGG	+	chr1_1:55143360-55143379	None:intergenic	30.0%
	GTTGCTAAATGAATTCATTC+AGG	-	chr1_1:55143370-55143389	Msa0029730:intron	30.0%
!!!	GTGCATTGCTATTTTTCATA+GGG	-	chr1_1:55143487-55143506	Msa0029730:intron	30.0%
!!	ATTGTTGTGTTGCTATGTTT+TGG	-	chr1_1:55143617-55143636	Msa0029730:intron	30.0%
	TAATCGGGACAATTTGATTA+TGG	-	chr1_1:55143655-55143674	Msa0029730:CDS	30.0%
	TTACAATTCTGTTGTACTTG+CGG	-	chr1_1:55143701-55143720	Msa0029730:exon	30.0%
	TCAAATATTCTATGATGTCC+GGG	-	chr1_1:55143825-55143844	Msa0029730:five_prime_UTR	30.0%
	CTAGAGAGAGAAAACAAAAA+TGG	-	chr1_1:55141821-55141840	Msa0029730:three_prime_UTR	30.0%
	AGAGAGAGAAAACAAAAATG+GGG	-	chr1_1:55141823-55141842	Msa0029730:three_prime_UTR	30.0%
!!	AGGAGCAATTTTGAAAAGAA+TGG	+	chr1_1:55141944-55141963	None:intergenic	30.0%
	CAGTTACAAGTAAGATTTGT+GGG	+	chr1_1:55142034-55142053	None:intergenic	30.0%
	ACAGTTACAAGTAAGATTTG+TGG	+	chr1_1:55142035-55142054	None:intergenic	30.0%
!!!	GAGTTCTTTTTTATGCTTTG+TGG	-	chr1_1:55142081-55142100	Msa0029730:intron	30.0%
!!!	TTTAGCTGTGTTTTGAAATC+TGG	-	chr1_1:55142320-55142339	Msa0029730:intron	30.0%
	ATCTATGTAACAAATACCGT+TGG	+	chr1_1:55142374-55142393	None:intergenic	30.0%
	TTAGGGTTAATGTATTATCC+TGG	-	chr1_1:55142397-55142416	Msa0029730:CDS	30.0%
!	AACAAAGGTATATGCTACAT+AGG	+	chr1_1:55142742-55142761	None:intergenic	30.0%
	TTTAATGAATTTGATGCCAC+TGG	-	chr1_1:55142846-55142865	Msa0029730:intron	30.0%
!	GGAATCAATTCCTTTGAAAA+GGG	+	chr1_1:55142876-55142895	None:intergenic	30.0%
	AAATTTATCCTCCAAATTGG+GGG	-	chr1_1:55142917-55142936	Msa0029730:intron	30.0%
	ACATAAGTTGCGTTAAAATC+TGG	+	chr1_1:55142951-55142970	None:intergenic	30.0%
	CTGATTGAAATGTTTCATAC+AGG	-	chr1_1:55143043-55143062	Msa0029730:intron	30.0%
	GTTCATTCATAAGCTAATAG+AGG	+	chr1_1:55143168-55143187	None:intergenic	30.0%
	TGAAAGCTACAAAAGTAAAG+AGG	+	chr1_1:55143279-55143298	None:intergenic	30.0%
	TGTAGAAATCGTACAGAATA+GGG	+	chr1_1:55143319-55143338	None:intergenic	30.0%
	TTGTAGAAATCGTACAGAAT+AGG	+	chr1_1:55143320-55143339	None:intergenic	30.0%
	ATTTAGCAACAAACCGTATT+CGG	+	chr1_1:55143360-55143379	None:intergenic	30.0%
	GTTGCTAAATGAATTCATTC+AGG	-	chr1_1:55143370-55143389	Msa0029730:intron	30.0%
!!!	GTGCATTGCTATTTTTCATA+GGG	-	chr1_1:55143487-55143506	Msa0029730:intron	30.0%
!!	ATTGTTGTGTTGCTATGTTT+TGG	-	chr1_1:55143617-55143636	Msa0029730:intron	30.0%
	TAATCGGGACAATTTGATTA+TGG	-	chr1_1:55143655-55143674	Msa0029730:CDS	30.0%
	TTACAATTCTGTTGTACTTG+CGG	-	chr1_1:55143701-55143720	Msa0029730:exon	30.0%
!!	TTTTCACCAGATTTGAGGTT+TGG	-	chr1_1:55142006-55142025	Msa0029730:CDS	35.0%
	GTATTATCCTGGAGAGTTTA+TGG	-	chr1_1:55142408-55142427	Msa0029730:CDS	35.0%
	CTTATTTCCATAAACTCTCC+AGG	+	chr1_1:55142418-55142437	None:intergenic	35.0%
	TAAGTACTAGTGAGACTGTT+CGG	+	chr1_1:55142488-55142507	None:intergenic	35.0%
	AGTCTCTGCACAAAATCATA+CGG	+	chr1_1:55142550-55142569	None:intergenic	35.0%
	ATTGCTACGATACAATGTCT+TGG	-	chr1_1:55142591-55142610	Msa0029730:CDS	35.0%
!	GGGAATCAATTCCTTTGAAA+AGG	+	chr1_1:55142877-55142896	None:intergenic	35.0%
	TGCCACTATCATATTTCTCA+AGG	-	chr1_1:55143079-55143098	Msa0029730:intron	35.0%
	GCCACTATCATATTTCTCAA+GGG	-	chr1_1:55143080-55143099	Msa0029730:intron	35.0%
	TCCCTTGAGAAATATGATAG+TGG	+	chr1_1:55143084-55143103	None:intergenic	35.0%
	ATCATATTTCTCAAGGGAGT+TGG	-	chr1_1:55143086-55143105	Msa0029730:intron	35.0%
	GAATGAACAGACATAGATAC+TGG	-	chr1_1:55143180-55143199	Msa0029730:intron	35.0%
!	ACTTTTGTAGCTTTCACATC+TGG	-	chr1_1:55143283-55143302	Msa0029730:intron	35.0%
	GTAGAAATCGTACAGAATAG+GGG	+	chr1_1:55143318-55143337	None:intergenic	35.0%
	TTTAGCAACAAACCGTATTC+GGG	+	chr1_1:55143359-55143378	None:intergenic	35.0%
!!	CTAGCTATTTCCTGTGTTTT+TGG	-	chr1_1:55143403-55143422	Msa0029730:intron	35.0%
!!!	GGTGCATTGCTATTTTTCAT+AGG	-	chr1_1:55143486-55143505	Msa0029730:intron	35.0%
!	TTCTTCCTCAACTGTTTTCT+GGG	+	chr1_1:55143528-55143547	None:intergenic	35.0%
!!	TCTAGACTGCTTTTGCTTTT+GGG	+	chr1_1:55143554-55143573	None:intergenic	35.0%
!!	TTCTAGACTGCTTTTGCTTT+TGG	+	chr1_1:55143555-55143574	None:intergenic	35.0%
	TGTGTCTGTTTACTAAGAAC+AGG	-	chr1_1:55143587-55143606	Msa0029730:intron	35.0%
	GGGACAATTTGATTATGGAT+TGG	-	chr1_1:55143660-55143679	Msa0029730:CDS	35.0%
!!	TTTTCACCAGATTTGAGGTT+TGG	-	chr1_1:55142006-55142025	Msa0029730:CDS	35.0%
	GTATTATCCTGGAGAGTTTA+TGG	-	chr1_1:55142408-55142427	Msa0029730:CDS	35.0%
	CTTATTTCCATAAACTCTCC+AGG	+	chr1_1:55142418-55142437	None:intergenic	35.0%
	TAAGTACTAGTGAGACTGTT+CGG	+	chr1_1:55142488-55142507	None:intergenic	35.0%
	AGTCTCTGCACAAAATCATA+CGG	+	chr1_1:55142550-55142569	None:intergenic	35.0%
	ATTGCTACGATACAATGTCT+TGG	-	chr1_1:55142591-55142610	Msa0029730:CDS	35.0%
!	GGGAATCAATTCCTTTGAAA+AGG	+	chr1_1:55142877-55142896	None:intergenic	35.0%
	TGCCACTATCATATTTCTCA+AGG	-	chr1_1:55143079-55143098	Msa0029730:intron	35.0%
	GCCACTATCATATTTCTCAA+GGG	-	chr1_1:55143080-55143099	Msa0029730:intron	35.0%
	TCCCTTGAGAAATATGATAG+TGG	+	chr1_1:55143084-55143103	None:intergenic	35.0%
	ATCATATTTCTCAAGGGAGT+TGG	-	chr1_1:55143086-55143105	Msa0029730:intron	35.0%
	GAATGAACAGACATAGATAC+TGG	-	chr1_1:55143180-55143199	Msa0029730:intron	35.0%
!	ACTTTTGTAGCTTTCACATC+TGG	-	chr1_1:55143283-55143302	Msa0029730:intron	35.0%
	GTAGAAATCGTACAGAATAG+GGG	+	chr1_1:55143318-55143337	None:intergenic	35.0%
	TTTAGCAACAAACCGTATTC+GGG	+	chr1_1:55143359-55143378	None:intergenic	35.0%
!!	CTAGCTATTTCCTGTGTTTT+TGG	-	chr1_1:55143403-55143422	Msa0029730:intron	35.0%
!!!	GGTGCATTGCTATTTTTCAT+AGG	-	chr1_1:55143486-55143505	Msa0029730:intron	35.0%
!	TTCTTCCTCAACTGTTTTCT+GGG	+	chr1_1:55143528-55143547	None:intergenic	35.0%
!!	TCTAGACTGCTTTTGCTTTT+GGG	+	chr1_1:55143554-55143573	None:intergenic	35.0%
!!	TTCTAGACTGCTTTTGCTTT+TGG	+	chr1_1:55143555-55143574	None:intergenic	35.0%
	TGTGTCTGTTTACTAAGAAC+AGG	-	chr1_1:55143587-55143606	Msa0029730:intron	35.0%
	GGGACAATTTGATTATGGAT+TGG	-	chr1_1:55143660-55143679	Msa0029730:CDS	35.0%
	CTCTCCTTAATCTGACCAAT+GGG	+	chr1_1:55141710-55141729	None:intergenic	40.0%
	ACTCTCCTTAATCTGACCAA+TGG	+	chr1_1:55141711-55141730	None:intergenic	40.0%
!!!	TGTTTTCTCTCTCTAGCTCT+CGG	+	chr1_1:55141817-55141836	None:intergenic	40.0%
!!!	AGCTGTGTTTTGAAATCTGG+CGG	-	chr1_1:55142323-55142342	Msa0029730:intron	40.0%
	AAGTACTAGTGAGACTGTTC+GGG	+	chr1_1:55142487-55142506	None:intergenic	40.0%
	ACTTACTTGAGCTTACCTAC+TGG	+	chr1_1:55142513-55142532	None:intergenic	40.0%
!	ATGATTTTGTGCAGAGACTG+TGG	-	chr1_1:55142551-55142570	Msa0029730:intron	40.0%
!	TGATTTTGTGCAGAGACTGT+GGG	-	chr1_1:55142552-55142571	Msa0029730:intron	40.0%
!!	TGTCTTGGAGACTTGTTACT+TGG	-	chr1_1:55142606-55142625	Msa0029730:CDS	40.0%
	AATGAATTTGATGCCACTGG+TGG	-	chr1_1:55142849-55142868	Msa0029730:intron	40.0%
	TTCCTCAAAATCGTGAGCTT+GGG	+	chr1_1:55142897-55142916	None:intergenic	40.0%
	TTTCCTCAAAATCGTGAGCT+TGG	+	chr1_1:55142898-55142917	None:intergenic	40.0%
	ATATTTCTCAAGGGAGTTGG+AGG	-	chr1_1:55143089-55143108	Msa0029730:intron	40.0%
	GGAGGAATTCTGTTTGTGTT+TGG	-	chr1_1:55143107-55143126	Msa0029730:intron	40.0%
	TTTGTGTTTGGCAGCACATT+TGG	-	chr1_1:55143119-55143138	Msa0029730:intron	40.0%
	CACATTTGGATCCTTTCTCT+TGG	-	chr1_1:55143133-55143152	Msa0029730:intron	40.0%
!!	GGAAGCATTTACCAAGAGAA+AGG	+	chr1_1:55143147-55143166	None:intergenic	40.0%
!!!	TTTCCTGTGTTTTTGGCTGA+TGG	-	chr1_1:55143410-55143429	Msa0029730:intron	40.0%
	TAACCATCAGCCAAAAACAC+AGG	+	chr1_1:55143416-55143435	None:intergenic	40.0%
!	TTGCAGAACACAGCACTTTT+TGG	-	chr1_1:55143465-55143484	Msa0029730:intron	40.0%
	CAATTCCCAGAAAACAGTTG+AGG	-	chr1_1:55143520-55143539	Msa0029730:intron	40.0%
!	CTTCTTCCTCAACTGTTTTC+TGG	+	chr1_1:55143529-55143548	None:intergenic	40.0%
!!	CTAGACTGCTTTTGCTTTTG+GGG	+	chr1_1:55143553-55143572	None:intergenic	40.0%
	GAACGGGATAAAACATTGCA+AGG	+	chr1_1:55143773-55143792	None:intergenic	40.0%
	CTCTCCTTAATCTGACCAAT+GGG	+	chr1_1:55141710-55141729	None:intergenic	40.0%
	ACTCTCCTTAATCTGACCAA+TGG	+	chr1_1:55141711-55141730	None:intergenic	40.0%
!!!	TGTTTTCTCTCTCTAGCTCT+CGG	+	chr1_1:55141817-55141836	None:intergenic	40.0%
!!!	AGCTGTGTTTTGAAATCTGG+CGG	-	chr1_1:55142323-55142342	Msa0029730:intron	40.0%
	AAGTACTAGTGAGACTGTTC+GGG	+	chr1_1:55142487-55142506	None:intergenic	40.0%
	ACTTACTTGAGCTTACCTAC+TGG	+	chr1_1:55142513-55142532	None:intergenic	40.0%
!	ATGATTTTGTGCAGAGACTG+TGG	-	chr1_1:55142551-55142570	Msa0029730:intron	40.0%
!	TGATTTTGTGCAGAGACTGT+GGG	-	chr1_1:55142552-55142571	Msa0029730:intron	40.0%
!!	TGTCTTGGAGACTTGTTACT+TGG	-	chr1_1:55142606-55142625	Msa0029730:CDS	40.0%
	AATGAATTTGATGCCACTGG+TGG	-	chr1_1:55142849-55142868	Msa0029730:intron	40.0%
	TTCCTCAAAATCGTGAGCTT+GGG	+	chr1_1:55142897-55142916	None:intergenic	40.0%
	TTTCCTCAAAATCGTGAGCT+TGG	+	chr1_1:55142898-55142917	None:intergenic	40.0%
	ATATTTCTCAAGGGAGTTGG+AGG	-	chr1_1:55143089-55143108	Msa0029730:intron	40.0%
	GGAGGAATTCTGTTTGTGTT+TGG	-	chr1_1:55143107-55143126	Msa0029730:intron	40.0%
	TTTGTGTTTGGCAGCACATT+TGG	-	chr1_1:55143119-55143138	Msa0029730:intron	40.0%
	CACATTTGGATCCTTTCTCT+TGG	-	chr1_1:55143133-55143152	Msa0029730:intron	40.0%
!!	GGAAGCATTTACCAAGAGAA+AGG	+	chr1_1:55143147-55143166	None:intergenic	40.0%
!!!	TTTCCTGTGTTTTTGGCTGA+TGG	-	chr1_1:55143410-55143429	Msa0029730:intron	40.0%
	TAACCATCAGCCAAAAACAC+AGG	+	chr1_1:55143416-55143435	None:intergenic	40.0%
!	TTGCAGAACACAGCACTTTT+TGG	-	chr1_1:55143465-55143484	Msa0029730:intron	40.0%
	CAATTCCCAGAAAACAGTTG+AGG	-	chr1_1:55143520-55143539	Msa0029730:intron	40.0%
!	CTTCTTCCTCAACTGTTTTC+TGG	+	chr1_1:55143529-55143548	None:intergenic	40.0%
!!	CTAGACTGCTTTTGCTTTTG+GGG	+	chr1_1:55143553-55143572	None:intergenic	40.0%
	GAACGGGATAAAACATTGCA+AGG	+	chr1_1:55143773-55143792	None:intergenic	40.0%
	CCTTAATCTGACCAATGGGA+AGG	+	chr1_1:55141706-55141725	None:intergenic	45.0%
	CCTTCCCATTGGTCAGATTA+AGG	-	chr1_1:55141703-55141722	Msa0029730:three_prime_UTR	45.0%
	AATGGGGTTCTTCTCCTTCA+TGG	-	chr1_1:55141839-55141858	Msa0029730:three_prime_UTR	45.0%
	ATGGGGTTCTTCTCCTTCAT+GGG	-	chr1_1:55141840-55141859	Msa0029730:three_prime_UTR	45.0%
	AGAGGGAAGCAAAGAGAACA+CGG	+	chr1_1:55141866-55141885	None:intergenic	45.0%
!	CTGGGTTTTCACCAGATTTG+AGG	-	chr1_1:55142001-55142020	Msa0029730:CDS	45.0%
	TGGGATCCAAACCTCAAATC+TGG	+	chr1_1:55142015-55142034	None:intergenic	45.0%
	GGAATAGAAGACCGTCAAGT+TGG	-	chr1_1:55142344-55142363	Msa0029730:intron	45.0%
	CCGTTGGAAAACCAACTTGA+CGG	+	chr1_1:55142358-55142377	None:intergenic	45.0%
!!!	CCGTCAAGTTGGTTTTCCAA+CGG	-	chr1_1:55142355-55142374	Msa0029730:intron	45.0%
	AGACTGTTCGGGAAAGCTTA+TGG	+	chr1_1:55142476-55142495	None:intergenic	45.0%
	TCACTAGTACTTACGCCAGT+AGG	-	chr1_1:55142495-55142514	Msa0029730:intron	45.0%
!	TTCCCAAGCTCACGATTTTG+AGG	-	chr1_1:55142892-55142911	Msa0029730:intron	45.0%
	GAAATCGTACAGAATAGGGG+TGG	+	chr1_1:55143315-55143334	None:intergenic	45.0%
	AGACCTACTAAGCCCGAATA+CGG	-	chr1_1:55143344-55143363	Msa0029730:intron	45.0%
	AAACCGTATTCGGGCTTAGT+AGG	+	chr1_1:55143350-55143369	None:intergenic	45.0%
	CCTTAATCTGACCAATGGGA+AGG	+	chr1_1:55141706-55141725	None:intergenic	45.0%
	CCTTCCCATTGGTCAGATTA+AGG	-	chr1_1:55141703-55141722	Msa0029730:three_prime_UTR	45.0%
	AATGGGGTTCTTCTCCTTCA+TGG	-	chr1_1:55141839-55141858	Msa0029730:three_prime_UTR	45.0%
	ATGGGGTTCTTCTCCTTCAT+GGG	-	chr1_1:55141840-55141859	Msa0029730:three_prime_UTR	45.0%
	AGAGGGAAGCAAAGAGAACA+CGG	+	chr1_1:55141866-55141885	None:intergenic	45.0%
!	CTGGGTTTTCACCAGATTTG+AGG	-	chr1_1:55142001-55142020	Msa0029730:CDS	45.0%
	TGGGATCCAAACCTCAAATC+TGG	+	chr1_1:55142015-55142034	None:intergenic	45.0%
	GGAATAGAAGACCGTCAAGT+TGG	-	chr1_1:55142344-55142363	Msa0029730:intron	45.0%
	CCGTTGGAAAACCAACTTGA+CGG	+	chr1_1:55142358-55142377	None:intergenic	45.0%
!!!	CCGTCAAGTTGGTTTTCCAA+CGG	-	chr1_1:55142355-55142374	Msa0029730:intron	45.0%
	AGACTGTTCGGGAAAGCTTA+TGG	+	chr1_1:55142476-55142495	None:intergenic	45.0%
	TCACTAGTACTTACGCCAGT+AGG	-	chr1_1:55142495-55142514	Msa0029730:intron	45.0%
!	TTCCCAAGCTCACGATTTTG+AGG	-	chr1_1:55142892-55142911	Msa0029730:intron	45.0%
	GAAATCGTACAGAATAGGGG+TGG	+	chr1_1:55143315-55143334	None:intergenic	45.0%
	AGACCTACTAAGCCCGAATA+CGG	-	chr1_1:55143344-55143363	Msa0029730:intron	45.0%
	AAACCGTATTCGGGCTTAGT+AGG	+	chr1_1:55143350-55143369	None:intergenic	45.0%
	AAAGAGAACACGGCCCATGA+AGG	+	chr1_1:55141856-55141875	None:intergenic	50.0%
	GAGAACTGACATCTGCCATG+CGG	+	chr1_1:55141898-55141917	None:intergenic	50.0%
!	CTTTGAAAAGGGTCCACCAG+TGG	+	chr1_1:55142865-55142884	None:intergenic	50.0%
!!	CACTGGTGGACCCTTTTCAA+AGG	-	chr1_1:55142863-55142882	Msa0029730:intron	50.0%
	TATCGCTACCCCCAATTTGG+AGG	+	chr1_1:55142928-55142947	None:intergenic	50.0%
	TGGTATCGCTACCCCCAATT+TGG	+	chr1_1:55142931-55142950	None:intergenic	50.0%
	AAAGAGAACACGGCCCATGA+AGG	+	chr1_1:55141856-55141875	None:intergenic	50.0%
	GAGAACTGACATCTGCCATG+CGG	+	chr1_1:55141898-55141917	None:intergenic	50.0%
!	CTTTGAAAAGGGTCCACCAG+TGG	+	chr1_1:55142865-55142884	None:intergenic	50.0%
!!	CACTGGTGGACCCTTTTCAA+AGG	-	chr1_1:55142863-55142882	Msa0029730:intron	50.0%
	TATCGCTACCCCCAATTTGG+AGG	+	chr1_1:55142928-55142947	None:intergenic	50.0%
	TGGTATCGCTACCCCCAATT+TGG	+	chr1_1:55142931-55142950	None:intergenic	50.0%
	CCATGCGGAGAGGATGAAGA+GGG	+	chr1_1:55141883-55141902	None:intergenic	55.0%
	CCATGCGGAGAGGATGAAGA+GGG	+	chr1_1:55141883-55141902	None:intergenic	55.0%
	GCTCTCGGTCACTGTGTTGC+TGG	+	chr1_1:55141802-55141821	None:intergenic	60.0%
	CCCTCTTCATCCTCTCCGCA+TGG	-	chr1_1:55141880-55141899	Msa0029730:three_prime_UTR	60.0%
	GCCATGCGGAGAGGATGAAG+AGG	+	chr1_1:55141884-55141903	None:intergenic	60.0%
	CTGACATCTGCCATGCGGAG+AGG	+	chr1_1:55141893-55141912	None:intergenic	60.0%
	GCTCTCGGTCACTGTGTTGC+TGG	+	chr1_1:55141802-55141821	None:intergenic	60.0%
	CCCTCTTCATCCTCTCCGCA+TGG	-	chr1_1:55141880-55141899	Msa0029730:three_prime_UTR	60.0%
	GCCATGCGGAGAGGATGAAG+AGG	+	chr1_1:55141884-55141903	None:intergenic	60.0%
	CTGACATCTGCCATGCGGAG+AGG	+	chr1_1:55141893-55141912	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	55141696	55143847	55141696	ID=Msa0029730;Name=Msa0029730
chr1_1	mRNA	55141696	55143847	55141696	ID=Msa0029730-mRNA-1;Parent=Msa0029730;Name=Msa0029730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=144\|1\|1\|1\|1\|1\|5\|275\|160
chr1_1	exon	55141696	55142072	55141696	ID=Msa0029730-mRNA-1:exon:16523;Parent=Msa0029730-mRNA-1
chr1_1	exon	55142152	55142250	55142152	ID=Msa0029730-mRNA-1:exon:16522;Parent=Msa0029730-mRNA-1
chr1_1	exon	55142389	55142478	55142389	ID=Msa0029730-mRNA-1:exon:16521;Parent=Msa0029730-mRNA-1
chr1_1	exon	55142575	55142698	55142575	ID=Msa0029730-mRNA-1:exon:16520;Parent=Msa0029730-mRNA-1
chr1_1	exon	55143636	55143847	55143636	ID=Msa0029730-mRNA-1:exon:16519;Parent=Msa0029730-mRNA-1
chr1_1	five_prime_UTR	55143704	55143847	55143704	ID=Msa0029730-mRNA-1:five_prime_utr;Parent=Msa0029730-mRNA-1
chr1_1	CDS	55143636	55143703	55143636	ID=Msa0029730-mRNA-1:cds;Parent=Msa0029730-mRNA-1
chr1_1	CDS	55142575	55142698	55142575	ID=Msa0029730-mRNA-1:cds;Parent=Msa0029730-mRNA-1
chr1_1	CDS	55142389	55142478	55142389	ID=Msa0029730-mRNA-1:cds;Parent=Msa0029730-mRNA-1
chr1_1	CDS	55142152	55142250	55142152	ID=Msa0029730-mRNA-1:cds;Parent=Msa0029730-mRNA-1
chr1_1	CDS	55141971	55142072	55141971	ID=Msa0029730-mRNA-1:cds;Parent=Msa0029730-mRNA-1
chr1_1	three_prime_UTR	55141696	55141970	55141696	ID=Msa0029730-mRNA-1:three_prime_utr;Parent=Msa0029730-mRNA-1

Gene Sequence

>Msa0029730

ATGGGGTTCTTCTCCTTCATGGGCCGTGTTCTCTTTGCTTCCCTCTTCATCCTCTCCGCATGGCAGATGTTTAATGAATTTGATGCCACTGGTGGACCCTTTTCAAAGGAATTGATTCCCAAGCTCACGATTTTGAGGAAAAATTTATCCTCCAAATTGGGGGTAGCGATACCAGATTTTAACGCAACTTATGTTCGTCAATTCGTTGCCACTATCATATTTCTCAAGGGAGTTGGAGGAATTCTGTTTGTGTTTGGCAGCACATTTGGATCCTTTCTCTTGCTTTCACATCTGGCGCTTACCACCCCTATTCTGTACGATTTCTACAACTATAGACCTACTAAGCCCGAATACGGTTTGTTGCTAAATGAATTCATTCAGAACACAGCACTTTTTGGTGCATTGCTATTTTTCATAGGGATGAAGAACTCAATTCCCAGAAAACAGTTGAGGAAGAAGACCCCAAAAGCAAAAGCAGTCTAG

Protein sequence

>Msa0029730

MGFFSFMGRVLFASLFILSAWQMFNEFDATGGPFSKELIPKLTILRKNLSSKLGVAIPDFNATYVRQFVATIIFLKGVGGILFVFGSTFGSFLLLSHLALTTPILYDFYNYRPTKPEYGLLLNEFIQNTALFGALLFFIGMKNSIPRKQLRKKTPKAKAV*