AlfalfaGEDB | Msa0518690

M. sativa cultivar zhongmu-4 / Msa0518690

KEGG: K00889
GO: GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008092 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051015 GO:0071704 GO:0071944
PFAM: PF02493.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518690	XP_013461615.1	97.042	710	13	4	1	707	1	705	0.0	1407

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518690	sp\|Q56YP2\|PI5K1_ARATH	63.941	746	216	11	4	706	16	751	0.0	948

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518690	A0A072VBT9	97.042	710	13	4	1	707	1	705	0.0	1407

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016670	Msa0518690	0.812641	3.828088e-51	-8.615850e-47
Msa0017510	Msa0518690	0.814092	1.836978e-51	-8.615850e-47
Msa0028640	Msa0518690	0.801949	7.071797e-49	-8.615850e-47
Msa0032920	Msa0518690	-0.824054	9.933953e-54	-8.615850e-47
Msa0032960	Msa0518690	-0.806171	9.365164e-50	-8.615850e-47
Msa0074240	Msa0518690	0.806956	6.393717e-50	-8.615850e-47
Msa0076250	Msa0518690	0.806296	8.812686e-50	-8.615850e-47
Msa0089630	Msa0518690	0.807135	5.859051e-50	-8.615850e-47
Msa0094850	Msa0518690	0.822582	2.192939e-53	-8.615850e-47
Msa0095900	Msa0518690	0.813113	3.017079e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518690	MtrunA17_Chr3g0131001	97.042	710	13	4	1	707	1	705	0.0	1407
Msa0518690	MtrunA17_Chr8g0385201	74.740	673	141	11	39	707	20	667	0.0	984
Msa0518690	MtrunA17_Chr5g0424301	65.473	698	197	8	41	706	47	732	0.0	907
Msa0518690	MtrunA17_Chr3g0115111	62.672	726	211	12	28	707	21	732	0.0	883
Msa0518690	MtrunA17_Chr3g0082501	52.514	716	269	11	48	706	59	760	0.0	696
Msa0518690	MtrunA17_Chr8g0353121	53.305	711	272	10	48	706	48	750	0.0	694
Msa0518690	MtrunA17_Chr1g0171491	49.799	745	281	13	48	706	56	793	0.0	691
Msa0518690	MtrunA17_Chr7g0256301	49.157	771	290	13	11	706	48	791	0.0	686
Msa0518690	MtrunA17_Chr1g0180261	41.397	802	290	14	49	703	47	815	0.0	558
Msa0518690	MtrunA17_Chr8g0380791	37.662	770	354	18	49	705	9	765	1.67e-155	469

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0518690	AT1G21980.1	63.941	746	216	11	4	706	16	751	948
Msa0518690	AT1G77740.2	67.092	705	183	9	40	706	60	753	944
Msa0518690	AT1G77740.1	67.092	705	183	9	40	706	60	753	944
Msa0518690	AT2G26420.1	59.508	731	246	9	1	707	1	705	849
Msa0518690	AT2G26420.2	58.943	738	253	9	1	707	1	719	847
Msa0518690	AT2G26420.3	58.943	738	253	9	1	707	1	719	847
Msa0518690	AT3G07960.1	53.267	704	273	11	48	706	22	714	717
Msa0518690	AT2G41210.1	48.977	733	274	13	48	706	65	771	679
Msa0518690	AT3G56960.2	49.932	739	263	19	48	706	67	778	667
Msa0518690	AT3G56960.1	49.932	739	263	19	48	706	67	778	667

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Find 287 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTCCAGAACCTTCCA+TGG	0.533472	3_4:+70538242	None:intergenic
AAAGTTTGAAGGAGTAGAGG+AGG	0.561682	3_4:+70538675	None:intergenic
AAATCCACCGATTGATGGGG+AGG	0.615911	3_4:+70537371	None:intergenic
AAATGTGAATGCATGTGGAG+TGG	0.667107	3_4:-70534399	Msa0518690:three_prime_UTR
AAATTTGACCATGGTGGTGG+GGG	0.505004	3_4:-70534367	Msa0518690:three_prime_UTR
AACGATGGATGCATGTACCA+AGG	0.678792	3_4:-70538351	Msa0518690:CDS
AAGAATGGGAATCGTTATGT+GGG	0.637878	3_4:-70538006	Msa0518690:CDS
AAGAGTGCATACCGGCCTAT+GGG	0.572174	3_4:+70536096	None:intergenic
AAGGGAAAGGTGTGTTTACG+TGG	0.620553	3_4:-70537960	Msa0518690:CDS
AAGGTTCTTGGGTTTCTGAT+AGG	0.451720	3_4:-70538194	Msa0518690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTAATTCCACGTGAAATT+TGG	+	chr3_4:70533810-70533829	None:intergenic	30.0%
TAGCAGCAATGTTATCATTT+AGG	-	chr3_4:70533963-70533982	Msa0518690:three_prime_UTR	30.0%
GTTATCATTTAGGTCATCTT+AGG	-	chr3_4:70533973-70533992	Msa0518690:three_prime_UTR	30.0%
GTGATACTTATAAAGGTTCT+TGG	-	chr3_4:70534410-70534429	Msa0518690:three_prime_UTR	30.0%
TGTTTCTTTGTTGGGTATTT+AGG	-	chr3_4:70535397-70535416	Msa0518690:intron	30.0%
ACAAATAGCAAGCATGTAAT+CGG	+	chr3_4:70535454-70535473	None:intergenic	30.0%
AATTTCACCTTGCTCAATAT+AGG	+	chr3_4:70535663-70535682	None:intergenic	30.0%
ATTGCCCATTACAATAAATC+GGG	+	chr3_4:70535961-70535980	None:intergenic	30.0%
CATTGCCCATTACAATAAAT+CGG	+	chr3_4:70535962-70535981	None:intergenic	30.0%
AATATCCTTACGGAGTTTAT+CGG	+	chr3_4:70536051-70536070	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	70533707	70538931	70533707	ID=Msa0518690;Name=Msa0518690
chr3_4	mRNA	70533707	70538931	70533707	ID=Msa0518690-mRNA-1;Parent=Msa0518690;Name=Msa0518690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=333\|1\|1\|1\|1\|1\|8\|1118\|707
chr3_4	exon	70533707	70535131	70533707	ID=Msa0518690-mRNA-1:exon:19222;Parent=Msa0518690-mRNA-1
chr3_4	exon	70536108	70536165	70536108	ID=Msa0518690-mRNA-1:exon:19221;Parent=Msa0518690-mRNA-1
chr3_4	exon	70536264	70536394	70536264	ID=Msa0518690-mRNA-1:exon:19220;Parent=Msa0518690-mRNA-1
chr3_4	exon	70536488	70536681	70536488	ID=Msa0518690-mRNA-1:exon:19219;Parent=Msa0518690-mRNA-1
chr3_4	exon	70536778	70536888	70536778	ID=Msa0518690-mRNA-1:exon:19218;Parent=Msa0518690-mRNA-1
chr3_4	exon	70537054	70537219	70537054	ID=Msa0518690-mRNA-1:exon:19217;Parent=Msa0518690-mRNA-1
chr3_4	exon	70537338	70537502	70537338	ID=Msa0518690-mRNA-1:exon:19216;Parent=Msa0518690-mRNA-1
chr3_4	exon	70537607	70538931	70537607	ID=Msa0518690-mRNA-1:exon:19215;Parent=Msa0518690-mRNA-1
chr3_4	five_prime_UTR	70538599	70538931	70538599	ID=Msa0518690-mRNA-1:five_prime_utr;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70537607	70538598	70537607	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70537338	70537502	70537338	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70537054	70537219	70537054	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70536778	70536888	70536778	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70536488	70536681	70536488	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70536264	70536394	70536264	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70536108	70536165	70536108	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	CDS	70534825	70535131	70534825	ID=Msa0518690-mRNA-1:cds;Parent=Msa0518690-mRNA-1
chr3_4	three_prime_UTR	70533707	70534824	70533707	ID=Msa0518690-mRNA-1:three_prime_utr;Parent=Msa0518690-mRNA-1

Gene Sequence

>Msa0518690

ATGCAAGAAACATTATTAACTATTTCGGAGCACCACCACCAAAACACAAATGCAAAGAAAAACGAGGAAATGGAAGTAGTAATAGTATCATCATCACCATGCCGTCGACCACCGCGAACACGGCGCGTGTCACCGACGCCAGTAGAAAAACACCTTCCAAACGGCGACGTATACAGTGGAAGTTTATCAGGAAACACACCACACGGCAAAGGTAAATACGTATGGAACGATGGATGCATGTACCAAGGAGAATGGAAGAAAGGTAAAGCATGGGGGAAAGGGAAATTCTCATGGCCATCAGGAGCTACTTATGAAGGTGATTTTATTTCAGGGTCCATGGAAGGTTCTGGAACTTTTGTTGGTGTGGAAGGTGATACTTATAAAGGTTCTTGGGTTTCTGATAGGAAACATGGGTTTGGTGAGAAATGTTATGCTAATGGTGATGTGTATGAGGGATGGTGGAGGTGCAATTTGCAAGATGGGGAAGGGAGGTATATGTGGAGGAATGGGAATGAGTATGTTGGTGAATGGAAATGTGGTGCTATATGTGGTAATGGTGTTTTAATTTGGAAGAATGGGAATCGTTATGTGGGTTGTTGGGAGAATGGTGTGCCGAAAGGGAAAGGTGTGTTTACGTGGCGTGATGGGAGTGTTTCATCAGGGAATTGGGGGAATGATGAGAAGAAGAGGGTTTCTGTGAGTGTGGATGATGGTTCTAAGAGTGTGGTTTTTCCTAGGATTTGTATTTGGGAGCTTGATGGGGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTGGAAGCTTGTATGTTTTATAGAGATGGAAGTGAATCAGAGATTGGTGGTGTTGGTGTTGGTGATGTAGGGTATGGACATTCACAGAAGAGTCCTTGTTATTCGATCGATGGGGATGTTAAGAAACCGGGTTATACTGTTTGTAAGGGACATAAGAACTATGATTTGATTCTTAATCTTCAATTGGGTATTAGATATTGTGTTGGGAAGCATGCTTCGGTGCCTCGAGAGCTTAGGTCAGGAGATTTTGATCCAAAGGAGAAATTCTGGACAAGGTTTCCTCCAGAAGGTTCCAAGTTTACGCCTCCCCATCAATCGGTGGATTTTAGATGGAAAGACTACTGTCCCGTGGTGTTCAGGCATTTGAGGGAATTATTTGCGATTGATCCTGCCGATTACATGCTTGCTATTTGTGGCAATGATACATTGAGGGAAATGTCTTCTCCTGGAAAAAGTGGAAGCTTCTTTTACCTTACTCAAGATGACCGATTTGTAATCAAAACCTTGAAGAAGTCTGAAGTCAAGGTGCTCATCAGGATGCTTCCCAGTTACTATCAACATGTTTCTCAGTACAAGAACTCGTTGGTTACGAAATTCCTGGGAGTTCATTGTGTCAAACCTATTGGAGGCCAAAAGACCCGATTTATTGTAATGGGCAATGTGTTTTGTTCGGAGTATCGAATTCATAAGCGATTTGACCTCAAAGGTTCATCTCATGGTCGGACAACCGATAAACTCCGTAAGGATATTGATGAGACTACTACTCTTAAAGACCTTGATCTTAGTTTTGCCTTTCGCCTGGAGCAGTCTTGGTTTCAAGAGCTAAAATGGCAACTTGATAGAGACTGTGAGTTCCTGGAAGCAGAGGGAATAATGGACTACAGTTTTCTCATTGGCCTTCATTTTCGTGATGATTACTCATCGGATGAAATGAAAAGTTCACCTAATGAATTGTGTTCTGGCAAGAGAGACATGCAAAATGATGACACTCAGGACACGAGATGGATACCCATAGGCCGAGGACCTCTAATCCGGCTGGGAATTAACATGCCAGCAAGAGCGGAGAGAGTGTGTAAAGCTGGATTGGATCAGCAGCAAACTGGAAGTAGCAAATCTACCCCTTCAGAGAGTAGCGGTGAGATCTCTGATGTAATCCTTTATTTTGGCATCATTGACATTCTCCAAGATTATGATATTAGCAAAAAGCTAGAGCATGCATACAAGTCACTACAAGTGGACCCCACATCCATCTCAGCCGTTGATCCCAAGCTATATTCCAAAAGGTTTAGGGATTTCATACACAGAATCTTTGTGGAGGACAAATAA

Protein sequence

>Msa0518690

MQETLLTISEHHHQNTNAKKNEEMEVVIVSSSPCRRPPRTRRVSPTPVEKHLPNGDVYSGSLSGNTPHGKGKYVWNDGCMYQGEWKKGKAWGKGKFSWPSGATYEGDFISGSMEGSGTFVGVEGDTYKGSWVSDRKHGFGEKCYANGDVYEGWWRCNLQDGEGRYMWRNGNEYVGEWKCGAICGNGVLIWKNGNRYVGCWENGVPKGKGVFTWRDGSVSSGNWGNDEKKRVSVSVDDGSKSVVFPRICIWELDGEAGDITCDIVDNVEACMFYRDGSESEIGGVGVGDVGYGHSQKSPCYSIDGDVKKPGYTVCKGHKNYDLILNLQLGIRYCVGKHASVPRELRSGDFDPKEKFWTRFPPEGSKFTPPHQSVDFRWKDYCPVVFRHLRELFAIDPADYMLAICGNDTLREMSSPGKSGSFFYLTQDDRFVIKTLKKSEVKVLIRMLPSYYQHVSQYKNSLVTKFLGVHCVKPIGGQKTRFIVMGNVFCSEYRIHKRFDLKGSSHGRTTDKLRKDIDETTTLKDLDLSFAFRLEQSWFQELKWQLDRDCEFLEAEGIMDYSFLIGLHFRDDYSSDEMKSSPNELCSGKRDMQNDDTQDTRWIPIGRGPLIRLGINMPARAERVCKAGLDQQQTGSSKSTPSESSGEISDVILYFGIIDILQDYDISKKLEHAYKSLQVDPTSISAVDPKLYSKRFRDFIHRIFVEDK*