AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378540 MtrunA17_Chr3g0131001 96.620 710 16 4 1 707 1 705 0.0 1400
Msa0378540 MtrunA17_Chr8g0385201 74.481 674 141 11 39 707 20 667 0.0 981
Msa0378540 MtrunA17_Chr5g0424301 65.473 698 197 8 41 706 47 732 0.0 908
Msa0378540 MtrunA17_Chr3g0115111 62.810 726 210 12 28 707 21 732 0.0 882
Msa0378540 MtrunA17_Chr3g0082501 52.654 716 268 12 48 706 59 760 0.0 695
Msa0378540 MtrunA17_Chr8g0353121 53.305 711 272 10 48 706 48 750 0.0 694
Msa0378540 MtrunA17_Chr1g0171491 49.799 745 281 13 48 706 56 793 0.0 691
Msa0378540 MtrunA17_Chr7g0256301 49.027 771 291 13 11 706 48 791 0.0 684
Msa0378540 MtrunA17_Chr1g0180261 41.272 802 291 14 49 703 47 815 0.0 558
Msa0378540 MtrunA17_Chr8g0380791 37.532 770 355 17 49 705 9 765 3.56e-154 465
Msa0378540 MtrunA17_Chr8g0380791 40.449 89 53 0 139 227 7 95 2.31e-13 73.6
Msa0378540 MtrunA17_Chr2g0316631 37.374 198 115 1 26 223 18 206 4.54e-33 129
Msa0378540 MtrunA17_Chr2g0316631 36.257 171 109 0 53 223 105 275 1.66e-28 116
Msa0378540 MtrunA17_Chr2g0316631 32.877 146 98 0 53 198 151 296 3.48e-19 89.0
Msa0378540 MtrunA17_Chr2g0316631 35.200 125 81 0 53 177 174 298 2.12e-16 80.9
Msa0378540 MtrunA17_Chr2g0316611 36.364 198 117 1 26 223 18 206 9.67e-33 130
Msa0378540 MtrunA17_Chr2g0316611 38.798 183 109 1 52 231 173 355 3.37e-29 120
Msa0378540 MtrunA17_Chr2g0316611 35.673 171 110 0 53 223 105 275 1.03e-25 109
Msa0378540 MtrunA17_Chr2g0316611 35.802 162 101 2 17 177 208 367 1.66e-21 97.1
Msa0378540 MtrunA17_Chr8g0377671 40.000 175 105 0 49 223 16 190 3.69e-32 126
Msa0378540 MtrunA17_Chr8g0377671 36.478 159 101 0 53 211 112 270 1.52e-21 95.5
Msa0378540 MtrunA17_Chr8g0377671 38.406 138 85 0 52 189 134 271 6.97e-21 93.6
Msa0378540 MtrunA17_Chr8g0377671 33.918 171 113 0 53 223 89 259 2.26e-20 92.0
Msa0378540 MtrunA17_Chr8g0377191 40.000 175 105 0 49 223 8 182 7.88e-32 122
Msa0378540 MtrunA17_Chr8g0377191 41.379 87 51 0 139 225 6 92 6.63e-11 62.4
Msa0378540 MtrunA17_Chr8g0382971 39.429 175 106 0 49 223 21 195 2.44e-31 125
Msa0378540 MtrunA17_Chr8g0382971 38.824 170 104 0 53 222 71 240 9.45e-29 118
Msa0378540 MtrunA17_Chr6g0467061 38.122 181 112 0 43 223 9 189 6.23e-31 124
Msa0378540 MtrunA17_Chr6g0467061 36.788 193 114 2 53 245 88 272 5.36e-29 118
Msa0378540 MtrunA17_Chr6g0467061 36.842 171 108 0 53 223 157 327 3.54e-24 104
Msa0378540 MtrunA17_Chr4g0059911 41.618 173 100 1 55 226 11 183 2.34e-29 120
Msa0378540 MtrunA17_Chr4g0059911 38.235 170 105 0 53 222 56 225 5.17e-29 119
Msa0378540 MtrunA17_Chr8g0336161 35.052 194 123 1 35 225 176 369 4.12e-28 118
Msa0378540 MtrunA17_Chr8g0336161 36.719 128 81 0 55 182 245 372 9.04e-18 86.7
Msa0378540 MtrunA17_Chr8g0336161 34.906 106 69 0 55 160 268 373 1.05e-13 73.9
Msa0378540 MtrunA17_Chr7g0233351 33.684 190 126 0 36 225 175 364 1.39e-27 116
Msa0378540 MtrunA17_Chr7g0233351 38.281 128 79 0 55 182 240 367 3.96e-18 87.8
Msa0378540 MtrunA17_Chr7g0233351 36.220 127 81 0 100 226 193 319 3.39e-16 81.6
Msa0378540 MtrunA17_Chr7g0233351 34.579 107 70 0 54 160 262 368 8.02e-13 71.2
Msa0378540 MtrunA17_Chr4g0055371 36.047 172 110 0 54 225 173 344 2.87e-27 115
Msa0378540 MtrunA17_Chr4g0055371 35.938 128 82 0 55 182 220 347 6.06e-15 77.8
Msa0378540 MtrunA17_Chr4g0055371 34.109 129 85 0 98 226 171 299 1.57e-14 76.3
Msa0378540 MtrunA17_Chr8g0377211 40.426 141 83 1 49 189 16 155 5.65e-27 107
Msa0378540 MtrunA17_Chr8g0377211 38.614 101 62 0 126 226 23 123 5.85e-15 73.6
Msa0378540 MtrunA17_Chr8g0385241 35.000 200 97 1 57 223 14 213 6.02e-27 114
Msa0378540 MtrunA17_Chr8g0385241 35.119 168 108 1 56 222 138 305 8.08e-18 86.7
Msa0378540 MtrunA17_Chr8g0385241 32.500 160 107 1 55 213 183 342 2.55e-12 69.7
Msa0378540 MtrunA17_Chr8g0385241 34.058 138 68 1 53 190 228 342 7.13e-11 65.1
Msa0378540 MtrunA17_Chr5g0424111 36.471 170 108 0 54 223 198 367 1.44e-25 110
Msa0378540 MtrunA17_Chr5g0424111 39.062 128 78 0 55 182 245 372 2.46e-17 85.1
Msa0378540 MtrunA17_Chr3g0114791 31.771 192 123 1 40 223 164 355 1.98e-23 103
Msa0378540 MtrunA17_Chr3g0114791 36.719 128 81 0 55 182 233 360 6.08e-16 80.9
Msa0378540 MtrunA17_Chr3g0114791 32.558 129 87 0 98 226 184 312 1.27e-13 73.6
Msa0378540 MtrunA17_Chr5g0398011 40.323 124 74 0 44 167 26 149 2.20e-22 94.0
Msa0378540 MtrunA17_Chr8g0383331 36.054 147 94 0 53 199 4 150 4.81e-20 87.8
Msa0378540 MtrunA17_Chr8g0383331 37.008 127 80 0 96 222 1 127 1.04e-18 84.0
Msa0378540 MtrunA17_Chr8g0377221 29.302 215 114 3 52 228 4 218 7.21e-18 84.3
Msa0378540 MtrunA17_Chr8g0377221 32.919 161 96 3 53 211 74 224 7.05e-16 78.6
Msa0378540 MtrunA17_Chr8g0377221 25.281 178 132 1 74 250 3 180 6.08e-13 69.7
Msa0378540 MtrunA17_Chr5g0398021 39.000 100 61 0 53 152 13 112 8.03e-18 81.3
Msa0378540 MtrunA17_Chr5g0398021 33.654 104 69 0 118 221 9 112 1.07e-11 63.5
Msa0378540 MtrunA17_Chr8g0383551 29.167 216 103 6 57 223 32 246 9.30e-16 79.7
Msa0378540 MtrunA17_Chr8g0383551 26.047 215 136 6 13 222 72 268 1.47e-11 66.6
Msa0378540 MtrunA17_Chr1g0210831 28.646 192 112 3 14 204 574 741 4.70e-14 75.9
Msa0378540 MtrunA17_Chr4g0044341 30.120 166 96 6 416 566 1495 1655 5.72e-12 69.7
Msa0378540 MtrunA17_Chr4g0069951 30.539 167 94 8 416 566 1555 1715 2.76e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378540 AT1G21980.1 63.807 746 217 11 4 706 16 751 0.0 944
Msa0378540 AT1G77740.2 66.809 705 185 8 40 706 60 753 0.0 941
Msa0378540 AT1G77740.1 66.809 705 185 8 40 706 60 753 0.0 941
Msa0378540 AT2G26420.1 59.371 731 247 9 1 707 1 705 0.0 847
Msa0378540 AT2G26420.2 58.808 738 254 9 1 707 1 719 0.0 845
Msa0378540 AT2G26420.3 58.808 738 254 9 1 707 1 719 0.0 845
Msa0378540 AT3G07960.1 52.841 704 276 11 48 706 22 714 0.0 715
Msa0378540 AT2G41210.1 48.840 733 275 13 48 706 65 771 0.0 678
Msa0378540 AT3G56960.2 49.384 731 279 17 48 706 67 778 0.0 666
Msa0378540 AT3G56960.1 49.384 731 279 17 48 706 67 778 0.0 666
Msa0378540 AT3G07960.3 51.689 592 242 8 48 600 22 608 0.0 602
Msa0378540 AT3G07960.2 53.559 562 221 7 48 570 22 582 0.0 600
Msa0378540 AT3G07960.4 53.559 562 221 7 48 570 22 582 0.0 600
Msa0378540 AT3G09920.3 41.282 780 320 16 49 706 49 812 0.0 538
Msa0378540 AT3G09920.4 41.282 780 320 16 49 706 49 812 0.0 538
Msa0378540 AT3G09920.2 41.282 780 320 16 49 706 49 812 0.0 538
Msa0378540 AT3G09920.1 41.282 780 320 16 49 706 49 812 0.0 538
Msa0378540 AT1G10900.2 40.649 770 324 16 49 707 7 754 0.0 534
Msa0378540 AT1G10900.2 40.476 84 50 0 140 223 6 89 4.00e-11 67.0
Msa0378540 AT1G10900.1 40.649 770 324 16 49 707 7 754 0.0 534
Msa0378540 AT1G10900.1 40.476 84 50 0 140 223 6 89 4.00e-11 67.0
Msa0378540 AT1G10900.3 40.649 770 324 16 49 707 7 754 0.0 534
Msa0378540 AT1G10900.3 40.476 84 50 0 140 223 6 89 4.00e-11 67.0
Msa0378540 AT1G60890.1 45.969 459 191 7 294 705 319 767 3.16e-127 396
Msa0378540 AT1G60890.1 48.454 194 100 0 47 240 5 198 2.01e-54 200
Msa0378540 AT1G60890.2 47.477 436 173 6 316 705 354 779 4.62e-127 396
Msa0378540 AT1G60890.2 48.485 198 102 0 43 240 13 210 6.24e-55 202
Msa0378540 AT4G01190.1 38.346 399 175 10 358 704 12 391 1.16e-77 254
Msa0378540 AT4G01190.3 38.346 399 175 10 358 704 22 401 1.33e-77 255
Msa0378540 AT4G01190.2 38.346 399 175 10 358 704 22 401 1.33e-77 255
Msa0378540 AT1G01460.1 45.175 228 122 2 342 569 4 228 1.68e-61 212
Msa0378540 AT1G01460.1 48.454 97 44 2 612 707 332 423 8.27e-18 87.0
Msa0378540 AT1G21920.2 31.390 223 150 2 1 223 125 344 4.42e-27 114
Msa0378540 AT1G21920.2 37.209 129 81 0 55 183 222 350 1.39e-15 79.7
Msa0378540 AT1G21920.2 34.109 129 85 0 98 226 173 301 3.93e-12 68.9
Msa0378540 AT1G77660.1 29.596 223 157 0 1 223 126 348 5.75e-27 114
Msa0378540 AT1G77660.1 35.659 129 83 0 55 183 226 354 6.26e-15 78.2
Msa0378540 AT1G77660.1 33.333 129 86 0 98 226 177 305 2.12e-14 76.3
Msa0378540 AT1G21920.1 31.390 223 150 2 1 223 125 344 8.67e-27 114
Msa0378540 AT1G21920.1 37.209 129 81 0 55 183 222 350 1.58e-15 79.7
Msa0378540 AT1G21920.1 34.109 129 85 0 98 226 173 301 4.22e-12 69.3
Msa0378540 AT4G17080.1 34.118 170 112 0 54 223 258 427 4.56e-26 113
Msa0378540 AT4G17080.1 36.719 128 81 0 55 182 305 432 4.88e-18 88.6
Msa0378540 AT4G17080.1 32.738 168 107 2 59 226 223 384 3.64e-16 82.4
Msa0378540 AT2G35170.1 32.821 195 128 2 29 223 205 396 3.66e-25 110
Msa0378540 AT2G35170.1 36.719 128 81 0 55 182 274 401 1.45e-18 89.7
Msa0378540 AT2G35170.1 34.146 123 81 0 104 226 231 353 2.01e-14 77.0
Msa0378540 AT1G75010.1 29.375 160 88 3 46 204 595 730 5.07e-12 69.7
Msa0378540 AT1G71010.1 30.120 166 96 7 416 566 1417 1577 1.04e-11 69.3

Find 287 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGATTTAATTGAATTTA+TGG 0.058710 3_1:+79374039 None:intergenic
TTAATCTTCAATTGGGTATT+AGG 0.146414 3_1:-79372913 Msa0378540:intron
TCTGATGTAATCCTTTATTT+TGG 0.181773 3_1:-79370296 Msa0378540:CDS
ATAATGTTTCTTGCATATTT+AGG 0.190193 3_1:+79373890 None:intergenic
CTTGGTTTCAAGAGCTAAAA+TGG 0.216088 3_1:-79371794 Msa0378540:intron
GAAGCCTTGCTTATTATTAT+TGG 0.245649 3_1:-79369941 Msa0378540:three_prime_UTR
CTCTGTTGTGTGCATTCAAA+TGG 0.249220 3_1:-79369473 Msa0378540:three_prime_UTR
GTTATCATTTAGTACATCTT+AGG 0.250933 3_1:-79373950 Msa0378540:five_prime_UTR
CTTCCTTTCCTTTCCAAACT+TGG 0.251115 3_1:+79369960 None:intergenic
TATGAAATCCCTAAACCTTT+TGG 0.258022 3_1:+79370163 None:intergenic
TTAACATTTAATTCCAAGTT+TGG 0.258879 3_1:-79369973 Msa0378540:three_prime_UTR
AGAAACATGTTGATAGTAAC+TGG 0.261885 3_1:+79372154 None:intergenic
TTGATCCAAAGGAGAAATTC+TGG 0.268700 3_1:-79372734 Msa0378540:CDS
GCTATATTCCAAAAGGTTTA+GGG 0.268928 3_1:-79370171 Msa0378540:CDS
CCATTATTCCCTCTGCTTCC+AGG 0.269835 3_1:+79371655 None:intergenic
CATCTTTGGTTGCATTGAAT+TGG 0.284383 3_1:-79369583 Msa0378540:three_prime_UTR
AGCTATATTCCAAAAGGTTT+AGG 0.285097 3_1:-79370172 Msa0378540:CDS
GGTGTTGGTGGTGGTGATGT+AGG 0.286321 3_1:-79373037 Msa0378540:CDS
AGAAACATTATTAACTATTT+CGG 0.287516 3_1:-79373878 Msa0378540:CDS
TACTAATTCCACGTGAAATT+TGG 0.289691 3_1:+79374111 None:intergenic
GAAAGAGTTGGGTGTTTCTT+TGG 0.293805 3_1:-79369392 Msa0378540:three_prime_UTR
GGAGTGTTTCATCAGGGAAT+TGG 0.303949 3_1:-79373237 Msa0378540:CDS
TTGGAGAAGGGTATAGTATA+GGG 0.317495 3_1:-79369740 Msa0378540:three_prime_UTR
TTGTCGCGTTGATTGTTTCT+TGG 0.318574 3_1:+79369274 None:intergenic
GTGATACTTATAAAGGTTCT+TGG 0.319831 3_1:-79373513 Msa0378540:CDS
TTTGATTTAATTGAATTTAT+GGG 0.321380 3_1:+79374040 None:intergenic
CTTGTCCAGAATTTCTCCTT+TGG 0.321711 3_1:+79372729 None:intergenic
CACACTCTCTCCGCTCTTGC+TGG 0.322769 3_1:+79370389 None:intergenic
GAGTGTTTCATCAGGGAATT+GGG 0.334465 3_1:-79373236 Msa0378540:CDS
CAGACCCGATTTATTGTAAT+GGG 0.335217 3_1:-79371969 Msa0378540:CDS
TGATAGAGACTGTGAGTTCC+TGG 0.341577 3_1:-79371673 Msa0378540:CDS
ACTACTGTCCCGTGGTGTTC+AGG 0.341724 3_1:-79372644 Msa0378540:intron
ATGGTTGGGACCTAAAATTT+TGG 0.342555 3_1:+79374153 None:intergenic
GGCGTAAACTTGGAACCTTC+TGG 0.344560 3_1:+79372699 None:intergenic
TTTGGAGAAGGGTATAGTAT+AGG 0.346095 3_1:-79369741 Msa0378540:three_prime_UTR
CATTGCCCATTACAATAAAT+CGG 0.346280 3_1:+79371964 None:intergenic
ACTCACAGAAACCCTCTTCT+TGG 0.347045 3_1:+79373204 None:intergenic
AATATCCTTACGGAGTTTAT+CGG 0.347395 3_1:+79371875 None:intergenic
TTTGATTCTTAATCTTCAAT+TGG 0.355941 3_1:-79372921 Msa0378540:CDS
TCAGGGTCCATGGAAGGTTC+TGG 0.355954 3_1:-79373556 Msa0378540:CDS
GTTCATTGTGTCAAACCTAT+TGG 0.370452 3_1:-79372095 Msa0378540:CDS
TCACCTAATGAGTTGTGTTC+TGG 0.371594 3_1:-79371570 Msa0378540:intron
ACGCGACAAAGCAATAAATT+TGG 0.374164 3_1:-79369260 Msa0378540:three_prime_UTR
TTCAAATTTGACCATGGTGG+TGG 0.378729 3_1:-79369681 Msa0378540:three_prime_UTR
TGTCAATGATGCCAAAATAA+AGG 0.379878 3_1:+79370285 None:intergenic
TACCTTTCTTCCATTCTCCT+TGG 0.380033 3_1:+79373641 None:intergenic
CCTTTCGCCTGGAGCAGTCT+TGG 0.384297 3_1:-79371812 Msa0378540:CDS
CTCGTTGGTTACGAAATTCC+TGG 0.384416 3_1:-79372120 Msa0378540:CDS
CCCCATGCCAAAGTTGGTCC+AGG 0.384426 3_1:+79370080 None:intergenic
ACCGGGTTATACTGTTTGTA+AGG 0.392688 3_1:-79372960 Msa0378540:CDS
TTTCTCATAGCCTTTGGAAA+TGG 0.394020 3_1:-79369908 Msa0378540:three_prime_UTR
GTAAACACACCTTTCCCTTT+CGG 0.395044 3_1:+79373271 None:intergenic
GGAGGTATATGTGGAGGAAT+GGG 0.400881 3_1:-79373396 Msa0378540:CDS
GTATACAGTGGAAGTTTATC+AGG 0.401485 3_1:-79373715 Msa0378540:CDS
CTTGACTTCAGACTTCTTCA+AGG 0.404538 3_1:+79372361 None:intergenic
GGCCATGTCAGGTGCTCATC+AGG 0.408142 3_1:-79372184 Msa0378540:intron
ATTTGTATTTGGGAGCTTGA+TGG 0.412365 3_1:-79373145 Msa0378540:CDS
ATACAGTCAAAGATGGATAA+TGG 0.413105 3_1:-79369643 Msa0378540:three_prime_UTR
CCACTGTATACGTCGCCGTT+TGG 0.415330 3_1:+79373727 None:intergenic
GTTTGAAGGAGTAGAGGAGG+AGG 0.417184 3_1:+79373985 None:intergenic
TTGATTCTTAATCTTCAATT+GGG 0.418290 3_1:-79372920 Msa0378540:CDS
GTGTTGGTGGTGGTGATGTA+GGG 0.420730 3_1:-79373036 Msa0378540:CDS
ATTGAGCCCTGGACCAACTT+TGG 0.424202 3_1:-79370087 Msa0378540:three_prime_UTR
GGGAAATTCTCATGGCCATC+AGG 0.424679 3_1:-79373604 Msa0378540:CDS
TATGTGGGTTGTTGGGAGAA+TGG 0.426025 3_1:-79373298 Msa0378540:CDS
GATGGAAGTGAATCAGAGAT+TGG 0.430424 3_1:-79373061 Msa0378540:CDS
CCTGGAAGCAGAGGGAATAA+TGG 0.435359 3_1:-79371655 Msa0378540:CDS
ACAAATAGCAAGCATGTAAT+CGG 0.437021 3_1:+79372472 None:intergenic
TTTCATACACAGAATCTTTG+TGG 0.437698 3_1:-79370147 Msa0378540:CDS
TGATACTTATAAAGGTTCTT+GGG 0.438562 3_1:-79373512 Msa0378540:CDS
CCCTGGACCAACTTTGGCAT+GGG 0.438814 3_1:-79370081 Msa0378540:three_prime_UTR
GGAATCGTTATGTGGGTTGT+TGG 0.438945 3_1:-79373306 Msa0378540:CDS
TTTGTATTTGGGAGCTTGAT+GGG 0.440443 3_1:-79373144 Msa0378540:CDS
CGATGGGGATGTTAAGAAAC+CGG 0.442381 3_1:-79372978 Msa0378540:CDS
ATACCAGAACACAACTCATT+AGG 0.443166 3_1:+79371567 None:intergenic
ATCTAAAATCCACCGATTGA+TGG 0.444477 3_1:+79372673 None:intergenic
TGCTAATGGTGATGTGTATG+AGG 0.445109 3_1:-79373452 Msa0378540:CDS
TGAAGGAGTAGAGGAGGAGG+AGG 0.446814 3_1:+79373988 None:intergenic
GGATTGGATCAGCAGCAAAC+TGG 0.447072 3_1:-79370359 Msa0378540:CDS
TTAATTCCCAGCCGGATTAG+AGG 0.447492 3_1:+79370416 None:intergenic
GTTGGGTATTTAGGCATTTG+AGG 0.449375 3_1:-79372517 Msa0378540:intron
TTGGGTATTTAGGCATTTGA+GGG 0.449393 3_1:-79372516 Msa0378540:intron
AAGGTTCTTGGGTTTCTGAT+AGG 0.451720 3_1:-79373501 Msa0378540:CDS
CGTGATGGGAGTGTTTCATC+AGG 0.451975 3_1:-79373244 Msa0378540:CDS
GTGGAAGGTGATACTTATAA+AGG 0.453599 3_1:-79373520 Msa0378540:CDS
ACAGACCCGATTTATTGTAA+TGG 0.455479 3_1:-79371970 Msa0378540:intron
TCTAAAATCCACCGATTGAT+GGG 0.456122 3_1:+79372674 None:intergenic
TCTGATAGGAAACATGGGTT+TGG 0.456876 3_1:-79373487 Msa0378540:CDS
CTTGGGATCAACGGCTGAGA+TGG 0.457259 3_1:+79370193 None:intergenic
GATTACATGCTTGCTATTTG+TGG 0.457685 3_1:-79372470 Msa0378540:CDS
ATGGGGAAGGGAGGTATATG+TGG 0.461629 3_1:-79373405 Msa0378540:CDS
ATACCAGAGGACCTCTAATC+CGG 0.461846 3_1:-79370427 Msa0378540:intron
ACATTGCTGCTAAAGTTTGA+AGG 0.464820 3_1:+79373971 None:intergenic
TGGGAGCTTGATGGGGAAGC+TGG 0.464916 3_1:-79373136 Msa0378540:CDS
ATCCCAAGCTATATTCCAAA+AGG 0.465411 3_1:-79370178 Msa0378540:CDS
TCAAATTTGACCATGGTGGT+GGG 0.465596 3_1:-79369680 Msa0378540:three_prime_UTR
GTCCTTGTTATTCGATCGAT+GGG 0.468826 3_1:-79372994 Msa0378540:CDS
GCGGAGAGAGTGTGTAAAGC+TGG 0.469147 3_1:-79370380 Msa0378540:CDS
GAAGAGTGCATACCGGCCTA+TGG 0.469968 3_1:+79371402 None:intergenic
TCAGAGATTGGTGGTGTTGG+TGG 0.470514 3_1:-79373049 Msa0378540:CDS
GCCGTGTTCGCGGTGGTCGA+CGG 0.472053 3_1:+79373782 None:intergenic
TTTGGTCACGTAATATGAAT+CGG 0.474111 3_1:-79369242 Msa0378540:three_prime_UTR
GGTGAGAAATGTTATGCTAA+TGG 0.475438 3_1:-79373466 Msa0378540:CDS
TGAATTGGAGAGAGATCAAA+AGG 0.475491 3_1:-79369568 Msa0378540:three_prime_UTR
TTGAGGGAAATGTCTTCTCC+TGG 0.476508 3_1:-79372437 Msa0378540:CDS
GAATCGTTATGTGGGTTGTT+GGG 0.476688 3_1:-79373305 Msa0378540:CDS
GAAAAGCACAAGAAAGAGTT+GGG 0.477157 3_1:-79369403 Msa0378540:three_prime_UTR
GCCTTGCTTATTATTATTGG+TGG 0.478123 3_1:-79369938 Msa0378540:three_prime_UTR
TTTGGTTTGTGTGAGTGTAA+TGG 0.478394 3_1:+79374171 None:intergenic
CTTCGGTGCCTCGAGAGCTT+AGG 0.479608 3_1:-79372767 Msa0378540:CDS
CAAATCGGTCATCTTGAGTA+AGG 0.481065 3_1:+79372393 None:intergenic
GGGAGGTATATGTGGAGGAA+TGG 0.483176 3_1:-79373397 Msa0378540:CDS
GGAGGTACAATTTGCAAGAT+GGG 0.484245 3_1:-79373423 Msa0378540:CDS
GTTTCTGTGAGTGTGGATGA+TGG 0.484895 3_1:-79373193 Msa0378540:CDS
TCACGTAATATGAATCGGTT+TGG 0.485070 3_1:-79369237 Msa0378540:three_prime_UTR
CAAACCTATTGGAGGCCAAA+AGG 0.485887 3_1:-79372084 Msa0378540:intron
AGCTAGAAACTGACAGAATG+AGG 0.486654 3_1:+79369498 None:intergenic
GGTGACACGCGCCGTGTTCG+CGG 0.487367 3_1:+79373772 None:intergenic
GTGTAATGGAATGGATTCAT+TGG 0.487646 3_1:+79374185 None:intergenic
GAGATTGGTGGTGTTGGTGG+TGG 0.487934 3_1:-79373046 Msa0378540:CDS
CTTGAAACCAAGACTGCTCC+AGG 0.487985 3_1:+79371805 None:intergenic
TCTGTTGTGTGCATTCAAAT+GGG 0.492382 3_1:-79369472 Msa0378540:three_prime_UTR
GAAGAATGGGAATCGTTATG+TGG 0.493445 3_1:-79373314 Msa0378540:CDS
GGTGGTGGTGATGTAGGGTA+TGG 0.493982 3_1:-79373031 Msa0378540:CDS
TTGATGGGGAGGCGTAAACT+TGG 0.495578 3_1:+79372689 None:intergenic
GGAATATAGCTTGGGATCAA+CGG 0.495725 3_1:+79370184 None:intergenic
GAGAGTGTGTAAAGCTGGAT+TGG 0.495931 3_1:-79370375 Msa0378540:CDS
GACCATGAGATGAACCTTTG+AGG 0.496961 3_1:+79371904 None:intergenic
CAGAGGACCTCTAATCCGGC+TGG 0.499620 3_1:-79370423 Msa0378540:CDS
TGGAGGTACAATTTGCAAGA+TGG 0.499639 3_1:-79373424 Msa0378540:CDS
TCAACGGCTGAGATGGATGT+GGG 0.500864 3_1:+79370200 None:intergenic
GTGATGTGTATGAGGGTTGG+TGG 0.503545 3_1:-79373444 Msa0378540:CDS
AAATTTGACCATGGTGGTGG+GGG 0.505004 3_1:-79369678 Msa0378540:three_prime_UTR
TGTACATGCTATGCATCATA+AGG 0.505158 3_1:-79369803 Msa0378540:three_prime_UTR
TGTATACGTCGCCGTTTGGA+AGG 0.506660 3_1:+79373731 None:intergenic
ATGTGTATGAGGGTTGGTGG+AGG 0.506922 3_1:-79373441 Msa0378540:CDS
TTGTGTTGGGAAGCATGCTT+CGG 0.507813 3_1:-79372784 Msa0378540:CDS
TACAATTTGCAAGATGGGGA+AGG 0.509651 3_1:-79373418 Msa0378540:CDS
TAGTCTCATCAATATCCTTA+CGG 0.513121 3_1:+79371865 None:intergenic
TGGAGGACAAATAACATGGT+TGG 0.516054 3_1:-79370127 Msa0378540:exon
TAGTGGAAGTGGTTGTGTAA+TGG 0.516760 3_1:+79374134 None:intergenic
GACCTCAAAGGTTCATCTCA+TGG 0.520619 3_1:-79371906 Msa0378540:CDS
CATAAGCGATTTGACCTCAA+AGG 0.521058 3_1:-79371918 Msa0378540:CDS
TGGGTTTCTGATAGGAAACA+TGG 0.521152 3_1:-79373493 Msa0378540:CDS
TGTGGTGCTATATGTGGTAA+TGG 0.522855 3_1:-79373349 Msa0378540:CDS
AGAAAAGCACAAGAAAGAGT+TGG 0.524496 3_1:-79369404 Msa0378540:three_prime_UTR
GCCACCAATAATAATAAGCA+AGG 0.526304 3_1:+79369937 None:intergenic
CAAAGGAGAAATTCTGGACA+AGG 0.526565 3_1:-79372728 Msa0378540:CDS
ATCAACGGCTGAGATGGATG+TGG 0.528438 3_1:+79370199 None:intergenic
GTGAAATTTGGTAGTGGAAG+TGG 0.529725 3_1:+79374123 None:intergenic
CAAATTTGACCATGGTGGTG+GGG 0.530441 3_1:-79369679 Msa0378540:three_prime_UTR
AGTAATCATCACGAAAATGA+AGG 0.531530 3_1:+79371613 None:intergenic
TTGGAAATGGAATGAGGTGG+GGG 0.531711 3_1:-79369895 Msa0378540:three_prime_UTR
TACCAAGGAGAATGGAAGAA+AGG 0.532077 3_1:-79373643 Msa0378540:CDS
GTGCCTCGAGAGCTTAGGTC+AGG 0.532296 3_1:-79372762 Msa0378540:CDS
AAAAGTTCCAGAACCTTCCA+TGG 0.533472 3_1:+79373549 None:intergenic
CCCATGCCAAAGTTGGTCCA+GGG 0.533612 3_1:+79370081 None:intergenic
GCCCTGGACCAACTTTGGCA+TGG 0.535051 3_1:-79370082 Msa0378540:three_prime_UTR
GATGCATGTACCAAGGAGAA+TGG 0.535617 3_1:-79373651 Msa0378540:CDS
TTGTGGCAATGATACATTGA+GGG 0.539553 3_1:-79372453 Msa0378540:CDS
ACTGTACATACAGTCAAAGA+TGG 0.540024 3_1:-79369650 Msa0378540:three_prime_UTR
AGTCCTTGTTATTCGATCGA+TGG 0.540552 3_1:-79372995 Msa0378540:CDS
TTGTGATATTGTTGATAATG+TGG 0.540603 3_1:-79373104 Msa0378540:CDS
TGCATACAAGTCACTACAAG+TGG 0.541017 3_1:-79370225 Msa0378540:CDS
TATTTCCACCTGAACACCAC+GGG 0.543557 3_1:+79372636 None:intergenic
GTGTGTTTACGTGGCGTGAT+GGG 0.545765 3_1:-79373258 Msa0378540:CDS
CCATCAGGAGCTACTTATGA+AGG 0.545903 3_1:-79373589 Msa0378540:CDS
GAAAGGCAAAACTAAGATCA+AGG 0.546651 3_1:+79371829 None:intergenic
ATTTAATTCCAAGTTTGGAA+AGG 0.547839 3_1:-79369968 Msa0378540:three_prime_UTR
GCCGTCGACCACCGCGAACA+CGG 0.548092 3_1:-79373783 Msa0378540:CDS
GTTCGCGGTGGTCGACGGCA+TGG 0.548954 3_1:+79373787 None:intergenic
ATGGTGATGTGTATGAGGGT+TGG 0.549055 3_1:-79373447 Msa0378540:CDS
TGGACAAGGTTTCCTCCAGA+AGG 0.550122 3_1:-79372714 Msa0378540:CDS
CTTGAAGAAGTCTGAAGTCA+AGG 0.551924 3_1:-79372360 Msa0378540:intron
ACAATATGAGAATTGAGCCC+TGG 0.553803 3_1:-79370098 Msa0378540:three_prime_UTR
GAAGTGGTTGTGTAATGGTT+GGG 0.553803 3_1:+79374139 None:intergenic
GGAATGAGTATGTTGGTGAA+TGG 0.558164 3_1:-79373375 Msa0378540:CDS
ATTGCCCATTACAATAAATC+GGG 0.558443 3_1:+79371965 None:intergenic
AGCTCCCAAATACAAATCCT+AGG 0.558462 3_1:+79373151 None:intergenic
TTTGTGTGAGTGTAATGGAA+TGG 0.558797 3_1:+79374176 None:intergenic
AATGGAAGAAAGGTAAAGCA+TGG 0.560447 3_1:-79373633 Msa0378540:CDS
CCAAGACTGCTCCAGGCGAA+AGG 0.561092 3_1:+79371812 None:intergenic
ATAGCAAGCATGTAATCGGC+AGG 0.561196 3_1:+79372476 None:intergenic
TTTATTTCAGGGTCCATGGA+AGG 0.561312 3_1:-79373562 Msa0378540:CDS
TTCCACGTGAAATTTGGTAG+TGG 0.561420 3_1:+79374117 None:intergenic
AAAGTTTGAAGGAGTAGAGG+AGG 0.561682 3_1:+79373982 None:intergenic
CTGGCATGTTAATTCCCAGC+CGG 0.561746 3_1:+79370408 None:intergenic
ACGGCAAAGGTAAATACGTA+TGG 0.563043 3_1:-79373681 Msa0378540:CDS
ATCTCACCGCTACTCTCTGA+AGG 0.563905 3_1:+79370320 None:intergenic
TTGTATTTGGGAGCTTGATG+GGG 0.567064 3_1:-79373143 Msa0378540:CDS
AATGTGAATGCATGTGGAGT+GGG 0.567084 3_1:-79369709 Msa0378540:three_prime_UTR
TGTAATGGAATGGATTCATT+GGG 0.567179 3_1:+79374186 None:intergenic
GTTTACGCCTCCCCATCAAT+CGG 0.568425 3_1:-79372685 Msa0378540:CDS
ATTCCAAGTTTGGAAAGGAA+AGG 0.569109 3_1:-79369963 Msa0378540:three_prime_UTR
CAGAATGAGGGGTCCTCTGT+AGG 0.569312 3_1:+79369511 None:intergenic
GGTGTGTTTACGTGGCGTGA+TGG 0.569414 3_1:-79373259 Msa0378540:CDS
TCAAAAGGAGATGATTTGCC+TGG 0.570822 3_1:-79369553 Msa0378540:three_prime_UTR
TCGTTGGTTACGAAATTCCT+GGG 0.571328 3_1:-79372119 Msa0378540:CDS
GTGTGTCCCCATGCCAAAGT+TGG 0.571882 3_1:+79370074 None:intergenic
GGGAGAATGGTGTGCCGAAA+GGG 0.571892 3_1:-79373285 Msa0378540:CDS
AAGAGTGCATACCGGCCTAT+GGG 0.572174 3_1:+79371403 None:intergenic
CCCTTACAAACAGTATAACC+CGG 0.573249 3_1:+79372959 None:intergenic
TAGCATCAGAATATATGAGC+TGG 0.574920 3_1:-79370045 Msa0378540:three_prime_UTR
ATGACACTCAGGACACGAGA+TGG 0.576124 3_1:-79371429 Msa0378540:CDS
CTGTGAGTTCCTGGAAGCAG+AGG 0.577302 3_1:-79371664 Msa0378540:CDS
AATGGTGTGCCGAAAGGGAA+AGG 0.577935 3_1:-79373280 Msa0378540:CDS
CATTGTGTCAAACCTATTGG+AGG 0.578059 3_1:-79372092 Msa0378540:CDS
ACAATTTGCAAGATGGGGAA+GGG 0.579043 3_1:-79373417 Msa0378540:CDS
GGGGAATGATGCCAAGAAGA+GGG 0.579761 3_1:-79373215 Msa0378540:CDS
GCTAAAGTTTGAAGGAGTAG+AGG 0.583173 3_1:+79373979 None:intergenic
ATGGAAGAAAGGTAAAGCAT+GGG 0.583487 3_1:-79373632 Msa0378540:CDS
CCACCTCATTCCATTTCCAA+AGG 0.583673 3_1:+79369898 None:intergenic
CTTTGGAAATGGAATGAGGT+GGG 0.587317 3_1:-79369897 Msa0378540:three_prime_UTR
ATACAAAAGCACAAGAAGCA+TGG 0.587829 3_1:+79369194 None:intergenic
GGATGATGGTTCTAAGAGTG+TGG 0.588270 3_1:-79373179 Msa0378540:CDS
AATTAACATGCCAGCAAGAG+CGG 0.589839 3_1:-79370399 Msa0378540:CDS
GGTAAATACGTATGGAACGA+TGG 0.590153 3_1:-79373673 Msa0378540:CDS
GTGAATGCATGTGGAGTGGG+AGG 0.593185 3_1:-79369706 Msa0378540:three_prime_UTR
GGAAGTGGTTGTGTAATGGT+TGG 0.594426 3_1:+79374138 None:intergenic
GACAACCGATAAACTCCGTA+AGG 0.596237 3_1:-79371880 Msa0378540:CDS
CCGGGTTATACTGTTTGTAA+GGG 0.599766 3_1:-79372959 Msa0378540:CDS
GCTAGAAACTGACAGAATGA+GGG 0.600878 3_1:+79369499 None:intergenic
AGAGGACCTCTAATCCGGCT+GGG 0.601886 3_1:-79370422 Msa0378540:CDS
GAATCAGAGATTGGTGGTGT+TGG 0.602478 3_1:-79373052 Msa0378540:CDS
TTCTCAGTACAAGAACTCGT+TGG 0.608088 3_1:-79372135 Msa0378540:CDS
CGAGATGGATACCCATAGGC+CGG 0.610897 3_1:-79371414 Msa0378540:intron
AGTGTTTCATCAGGGAATTG+GGG 0.612643 3_1:-79373235 Msa0378540:CDS
TAGCCTTTGGAAATGGAATG+AGG 0.613044 3_1:-79369901 Msa0378540:three_prime_UTR
TGGAAGAAAGGTAAAGCATG+GGG 0.615750 3_1:-79373631 Msa0378540:CDS
AAATCCACCGATTGATGGGG+AGG 0.615911 3_1:+79372678 None:intergenic
GCTAATGGTGATGTGTATGA+GGG 0.617886 3_1:-79373451 Msa0378540:CDS
TGGAAATGTGGTGCTATATG+TGG 0.618355 3_1:-79373355 Msa0378540:CDS
TCTCACCGCTACTCTCTGAA+GGG 0.618386 3_1:+79370321 None:intergenic
GGGTTTCTGATAGGAAACAT+GGG 0.619609 3_1:-79373492 Msa0378540:CDS
CCTTCATAAGTAGCTCCTGA+TGG 0.620490 3_1:+79373589 None:intergenic
AAGGGAAAGGTGTGTTTACG+TGG 0.620553 3_1:-79373267 Msa0378540:CDS
TTTGGAAATGGAATGAGGTG+GGG 0.621319 3_1:-79369896 Msa0378540:three_prime_UTR
TGTGAGTTCCTGGAAGCAGA+GGG 0.621723 3_1:-79371663 Msa0378540:CDS
GGGAAGGGAGGTATATGTGG+AGG 0.626837 3_1:-79373402 Msa0378540:CDS
TCAAAGGTTCATCTCATGGT+CGG 0.627326 3_1:-79371902 Msa0378540:CDS
AGAAACTTGGCATAAAAGAG+AGG 0.630216 3_1:-79369145 Msa0378540:three_prime_UTR
GAAGAGGGTTTCTGTGAGTG+TGG 0.631349 3_1:-79373200 Msa0378540:CDS
ACGTATTTACCTTTGCCGTG+TGG 0.632527 3_1:+79373685 None:intergenic
TCTCCTGACCTAAGCTCTCG+AGG 0.633465 3_1:+79372759 None:intergenic
TGGGAGAATGGTGTGCCGAA+AGG 0.634731 3_1:-79373286 Msa0378540:CDS
GTGTTTCATCAGGGAATTGG+GGG 0.636387 3_1:-79373234 Msa0378540:CDS
AAGAATGGGAATCGTTATGT+GGG 0.637878 3_1:-79373313 Msa0378540:CDS
GACACGAGATGGATACCCAT+AGG 0.639932 3_1:-79371418 Msa0378540:CDS
TTTGTGGCAATGATACATTG+AGG 0.640401 3_1:-79372454 Msa0378540:CDS
GTTTGACACAATGAACTCCC+AGG 0.642986 3_1:+79372102 None:intergenic
AGGAATGGGAATGAGTATGT+TGG 0.643494 3_1:-79373382 Msa0378540:CDS
TACGCCTCCCCATCAATCGG+TGG 0.646074 3_1:-79372682 Msa0378540:CDS
CCTGGACCAACTTTGGCATG+GGG 0.647992 3_1:-79370080 Msa0378540:three_prime_UTR
CCTTTGGAAATGGAATGAGG+TGG 0.650625 3_1:-79369898 Msa0378540:three_prime_UTR
AGAAAGAAAAGTTCCTACAG+AGG 0.652469 3_1:-79369524 Msa0378540:three_prime_UTR
ATTTGCAAGATGGGGAAGGG+AGG 0.653215 3_1:-79373414 Msa0378540:CDS
TTTGTGGAGGACAAATAACA+TGG 0.653967 3_1:-79370131 Msa0378540:exon
TATGTTGGTGAATGGAAATG+TGG 0.655881 3_1:-79373367 Msa0378540:CDS
CATACACAGAATCTTTGTGG+AGG 0.658046 3_1:-79370144 Msa0378540:CDS
TTCCACTACCAAATTTCACG+TGG 0.658199 3_1:-79374119 Msa0378540:five_prime_UTR
CCAAACGGCGACGTATACAG+TGG 0.660988 3_1:-79373727 Msa0378540:CDS
CTAAAATCCACCGATTGATG+GGG 0.661133 3_1:+79372675 None:intergenic
GATGGGGATGTTAAGAAACC+GGG 0.661758 3_1:-79372977 Msa0378540:CDS
CATGCAAAATGATGACACTC+AGG 0.664084 3_1:-79371440 Msa0378540:CDS
GGAAACACACCACACGGCAA+AGG 0.664480 3_1:-79373694 Msa0378540:CDS
GAGGGATTCAAATTTGACCA+TGG 0.665021 3_1:-79369687 Msa0378540:three_prime_UTR
AAATGTGAATGCATGTGGAG+TGG 0.667107 3_1:-79369710 Msa0378540:three_prime_UTR
GACACGCGCCGTGTTCGCGG+TGG 0.667971 3_1:+79373775 None:intergenic
GTAAACTTGGAACCTTCTGG+AGG 0.668383 3_1:+79372702 None:intergenic
TTATTTCCACCTGAACACCA+CGG 0.668462 3_1:+79372635 None:intergenic
GGATTCAAATTTGACCATGG+TGG 0.668478 3_1:-79369684 Msa0378540:three_prime_UTR
TTATCAGGAAACACACCACA+CGG 0.669927 3_1:-79373700 Msa0378540:CDS
GAAACATGTTGATAGTAACT+GGG 0.673484 3_1:+79372155 None:intergenic
GAGGTACAATTTGCAAGATG+GGG 0.673630 3_1:-79373422 Msa0378540:CDS
GTGATGGGAGTGTTTCATCA+GGG 0.673719 3_1:-79373243 Msa0378540:CDS
CTAGAAACTGACAGAATGAG+GGG 0.676895 3_1:+79369500 None:intergenic
AACGATGGATGCATGTACCA+AGG 0.678792 3_1:-79373658 Msa0378540:CDS
GGAAGAAAGGTAAAGCATGG+GGG 0.686830 3_1:-79373630 Msa0378540:CDS
TGAATGCATGTGGAGTGGGA+GGG 0.690669 3_1:-79369705 Msa0378540:three_prime_UTR
CTCACCGCTACTCTCTGAAG+GGG 0.694466 3_1:+79370322 None:intergenic
ATGGAAAGACTACTGTCCCG+TGG 0.696500 3_1:-79372652 Msa0378540:CDS
CAACGGCTGAGATGGATGTG+GGG 0.698303 3_1:+79370201 None:intergenic
TCTACCCCTTCAGAGAGTAG+CGG 0.711188 3_1:-79370326 Msa0378540:CDS
GGAAGTGAATCAGAGATTGG+TGG 0.714127 3_1:-79373058 Msa0378540:CDS
TCCCCATCGATCGAATAACA+AGG 0.724583 3_1:+79372992 None:intergenic
TCCTTGTTATTCGATCGATG+GGG 0.734954 3_1:-79372993 Msa0378540:CDS
GGTTTGGTATGTGAGAGCGA+TGG 0.749697 3_1:-79369221 Msa0378540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTAATTGAATTTAT+GGG + chr3_1:79369192-79369211 None:intergenic 10.0%
!!! TAAATTTTTATAATTTCACA+AGG + chr3_1:79371904-79371923 None:intergenic 10.0%
!!! TTTTTTATTACTTTTTGTAA+TGG - chr3_1:79373464-79373483 Msa0378540:CDS 10.0%
!!! CTTTGATTTAATTGAATTTA+TGG + chr3_1:79369193-79369212 None:intergenic 15.0%
!! AGAAACATTATTAACTATTT+CGG - chr3_1:79369351-79369370 Msa0378540:three_prime_UTR 15.0%
!!! TATTAATGATGTTTGTATTT+TGG - chr3_1:79370668-79370687 Msa0378540:intron 15.0%
!! TAAAATGTAGCAATAAAAAA+TGG + chr3_1:79372111-79372130 None:intergenic 15.0%
!! TATGAAAAGATTATTCATTT+AGG - chr3_1:79372129-79372148 Msa0378540:CDS 15.0%
!! AAAAAAACTTACTATAACAT+TGG + chr3_1:79372466-79372485 None:intergenic 15.0%
!! TTCAAAAATATAAAGAAACT+TGG - chr3_1:79374071-79374090 Msa0378540:five_prime_UTR 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + chr3_1:79374203-79374222 None:intergenic 15.0%
!!! TTTGTATTAGAGACATTTTT+GGG + chr3_1:79369163-79369182 None:intergenic 20.0%
!!! ATTTGTATTAGAGACATTTT+TGG + chr3_1:79369164-79369183 None:intergenic 20.0%
!! ATAATGTTTCTTGCATATTT+AGG + chr3_1:79369342-79369361 None:intergenic 20.0%
!! TTTGATTCTTAATCTTCAAT+TGG - chr3_1:79370308-79370327 Msa0378540:CDS 20.0%
!! TTGATTCTTAATCTTCAATT+GGG - chr3_1:79370309-79370328 Msa0378540:CDS 20.0%
!!! TTGGTTTATTTTTATGTGTT+TGG - chr3_1:79370382-79370401 Msa0378540:CDS 20.0%
!!! TTTTGTTTTAGATATTGTGT+TGG - chr3_1:79370431-79370450 Msa0378540:intron 20.0%
!!! TTTGTTTTAGATATTGTGTT+GGG - chr3_1:79370432-79370451 Msa0378540:intron 20.0%
!! TCAAGTCTAGTAATTAATTA+AGG + chr3_1:79370913-79370932 None:intergenic 20.0%
!! AGAACAAATCAATAAATGAT+GGG + chr3_1:79372043-79372062 None:intergenic 20.0%
!! TAGAACAAATCAATAAATGA+TGG + chr3_1:79372044-79372063 None:intergenic 20.0%
!! TGTCAATATTTATATGTAAC+TGG + chr3_1:79372615-79372634 None:intergenic 20.0%
!! TATTAAATATCTGCATAGTT+AGG + chr3_1:79372757-79372776 None:intergenic 20.0%
!!! TTTTGCTAATATCATAATCT+TGG + chr3_1:79372974-79372993 None:intergenic 20.0%
!! TTAACATTTAATTCCAAGTT+TGG - chr3_1:79373256-79373275 Msa0378540:CDS 20.0%
!!! TGTTTTTTGTTTTCATTTAG+AGG - chr3_1:79373376-79373395 Msa0378540:CDS 20.0%
!!! GTTTTTTGTTTTCATTTAGA+GGG - chr3_1:79373377-79373396 Msa0378540:CDS 20.0%
!!! ATTACTTTTTGTAATGGTTT+TGG - chr3_1:79373470-79373489 Msa0378540:CDS 20.0%
!!! ATGAATGAATTTTACATCTT+TGG - chr3_1:79373632-79373651 Msa0378540:CDS 20.0%
!!! ATTGGACATATATTTTGAAA+CGG + chr3_1:79374144-79374163 None:intergenic 20.0%
! GTTATCATTTAGTACATCTT+AGG - chr3_1:79369279-79369298 Msa0378540:three_prime_UTR 25.0%
!! TTTTCTTTGCATTTGTGTTT+TGG + chr3_1:79369387-79369406 None:intergenic 25.0%
!!! TATGAAGGTGATTTTATTTC+AGG - chr3_1:79369655-79369674 Msa0378540:three_prime_UTR 25.0%
!!! ATGAAGGTGATTTTATTTCA+GGG - chr3_1:79369656-79369675 Msa0378540:three_prime_UTR 25.0%
! TGATACTTATAAAGGTTCTT+GGG - chr3_1:79369717-79369736 Msa0378540:three_prime_UTR 25.0%
!!! GTGTTTTAATTTGGAAGAAT+GGG - chr3_1:79369902-79369921 Msa0378540:three_prime_UTR 25.0%
!! TTTTTCCTAGGATTTGTATT+TGG - chr3_1:79370073-79370092 Msa0378540:three_prime_UTR 25.0%
!! TTTTCCTAGGATTTGTATTT+GGG - chr3_1:79370074-79370093 Msa0378540:three_prime_UTR 25.0%
!!! TTGTGATATTGTTGATAATG+TGG - chr3_1:79370125-79370144 Msa0378540:exon 25.0%
! TTAATCTTCAATTGGGTATT+AGG - chr3_1:79370316-79370335 Msa0378540:CDS 25.0%
! TGTTATCTACATTGTTAGTT+TGG - chr3_1:79370351-79370370 Msa0378540:CDS 25.0%
!!! TAATGATGTTTGTATTTTGG+TGG - chr3_1:79370671-79370690 Msa0378540:intron 25.0%
!!! AATGATGTTTGTATTTTGGT+GGG - chr3_1:79370672-79370691 Msa0378540:intron 25.0%
!!! TCAAGGTTTTGATTACAAAT+CGG + chr3_1:79370854-79370873 None:intergenic 25.0%
! TCTAGTAATTAATTAAGGCT+AGG + chr3_1:79370908-79370927 None:intergenic 25.0%
! TATAAAACCTATATTGAGCA+AGG - chr3_1:79370959-79370978 Msa0378540:intron 25.0%
! TTCAGTGCAAAATTTAAACT+AGG + chr3_1:79371180-79371199 None:intergenic 25.0%
! AATGAATACTTGTATTGCTA+TGG - chr3_1:79371232-79371251 Msa0378540:intron 25.0%
!! TTTTATGATGTTCTTAGAGT+TGG - chr3_1:79371503-79371522 Msa0378540:intron 25.0%
!! TTTTGTAATGATTTTTGCTC+AGG - chr3_1:79371528-79371547 Msa0378540:intron 25.0%
! TTAAAAGATTTGTGGGATTA+TGG - chr3_1:79371747-79371766 Msa0378540:intron 25.0%
! ACAACAAAAACAATCAGATA+CGG + chr3_1:79371862-79371881 None:intergenic 25.0%
! GACTAAATATGGAAAATTCA+AGG + chr3_1:79371943-79371962 None:intergenic 25.0%
! TAGAAATCAAAGTCACTTAT+GGG - chr3_1:79372062-79372081 Msa0378540:intron 25.0%
! TAAAAGTAAAAGAAATGACC+CGG + chr3_1:79372187-79372206 None:intergenic 25.0%
!! TTTTGCTTCTATTTGCATTA+TGG + chr3_1:79372251-79372270 None:intergenic 25.0%
!!! TCTGATGTAATCCTTTATTT+TGG - chr3_1:79372933-79372952 Msa0378540:CDS 25.0%
! ATTTAATTCCAAGTTTGGAA+AGG - chr3_1:79373261-79373280 Msa0378540:CDS 25.0%
!! TAAATTTTTCTCATAGCCTT+TGG - chr3_1:79373315-79373334 Msa0378540:CDS 25.0%
!!! TCATTATGCTTTTTCAAACT+TGG + chr3_1:79373892-79373911 None:intergenic 25.0%
! GATCAAAATTCAAAAAGCTA+AGG + chr3_1:79374110-79374129 None:intergenic 25.0%
! TGTAATGGAATGGATTCATT+GGG + chr3_1:79369046-79369065 None:intergenic 30.0%
! CTCACACAAACCAAAATTTT+AGG - chr3_1:79369066-79369085 Msa0378540:three_prime_UTR 30.0%
TACTAATTCCACGTGAAATT+TGG + chr3_1:79369121-79369140 None:intergenic 30.0%
GTGATACTTATAAAGGTTCT+TGG - chr3_1:79369716-79369735 Msa0378540:three_prime_UTR 30.0%
!!! GTGGTAATGGTGTTTTAATT+TGG - chr3_1:79369893-79369912 Msa0378540:three_prime_UTR 30.0%
!!! GGTGTTTTAATTTGGAAGAA+TGG - chr3_1:79369901-79369920 Msa0378540:three_prime_UTR 30.0%
! GCTTGTATGTTTTATAGAGA+TGG - chr3_1:79370150-79370169 Msa0378540:CDS 30.0%
! CTACATTGTTAGTTTGGATT+TGG - chr3_1:79370357-79370376 Msa0378540:CDS 30.0%
! TGTTAGTTTGGATTTGGATT+TGG - chr3_1:79370363-79370382 Msa0378540:CDS 30.0%
! TGGTTGTTTGTTTCTTTGTT+GGG - chr3_1:79370695-79370714 Msa0378540:intron 30.0%
TGTTTCTTTGTTGGGTATTT+AGG - chr3_1:79370703-79370722 Msa0378540:intron 30.0%
ACAAATAGCAAGCATGTAAT+CGG + chr3_1:79370760-79370779 None:intergenic 30.0%
AATTTCACCTTGCTCAATAT+AGG + chr3_1:79370969-79370988 None:intergenic 30.0%
!! GAAACATGTTGATAGTAACT+GGG + chr3_1:79371077-79371096 None:intergenic 30.0%
!! AGAAACATGTTGATAGTAAC+TGG + chr3_1:79371078-79371097 None:intergenic 30.0%
ATTGCCCATTACAATAAATC+GGG + chr3_1:79371267-79371286 None:intergenic 30.0%
CATTGCCCATTACAATAAAT+CGG + chr3_1:79371268-79371287 None:intergenic 30.0%
AATATCCTTACGGAGTTTAT+CGG + chr3_1:79371357-79371376 None:intergenic 30.0%
TAGTCTCATCAATATCCTTA+CGG + chr3_1:79371367-79371386 None:intergenic 30.0%
AGTGAAAGAAACTTTACACA+AGG + chr3_1:79371475-79371494 None:intergenic 30.0%
AGTAATCATCACGAAAATGA+AGG + chr3_1:79371619-79371638 None:intergenic 30.0%
! TTTTCGTGATGATTACTCAT+CGG - chr3_1:79371622-79371641 Msa0378540:CDS 30.0%
AATTCACATGAAAGGAAACA+TGG + chr3_1:79371712-79371731 None:intergenic 30.0%
! AAATCTTTTAACCCTTGGAT+CGG + chr3_1:79371738-79371757 None:intergenic 30.0%
!!! TTGTTTTTGTTGTTTCAGCT+TGG - chr3_1:79371869-79371888 Msa0378540:CDS 30.0%
!! TATCTCTTTGGGACTAAATA+TGG + chr3_1:79371954-79371973 None:intergenic 30.0%
TCCTCAAAACTTATCTCTTT+GGG + chr3_1:79371965-79371984 None:intergenic 30.0%
ATCCTCAAAACTTATCTCTT+TGG + chr3_1:79371966-79371985 None:intergenic 30.0%
!! TTTTGAGGATTTAGAAATGC+TGG - chr3_1:79371976-79371995 Msa0378540:intron 30.0%
!! CAAATCAATAAATGATGGGT+TGG + chr3_1:79372039-79372058 None:intergenic 30.0%
CTAGAAATCAAAGTCACTTA+TGG - chr3_1:79372061-79372080 Msa0378540:intron 30.0%
! TATTTCTACATGACTAGTAG+TGG + chr3_1:79372337-79372356 None:intergenic 30.0%
!!! GTTTTTTTGACAACAAATGC+TGG - chr3_1:79372478-79372497 Msa0378540:CDS 30.0%
! AACAAATAGCTTTACAGAGA+AGG + chr3_1:79372523-79372542 None:intergenic 30.0%
CAATGATATTGATAGAGCAA+TGG - chr3_1:79372549-79372568 Msa0378540:intron 30.0%
! TTTTAGTAATCCGTTTCTCT+TGG - chr3_1:79372705-79372724 Msa0378540:CDS 30.0%
TTTAGTAATCCGTTTCTCTT+GGG - chr3_1:79372706-79372725 Msa0378540:CDS 30.0%
TATGATTCTTGATATACCAG+AGG - chr3_1:79372789-79372808 Msa0378540:CDS 30.0%
TGTCAATGATGCCAAAATAA+AGG + chr3_1:79372947-79372966 None:intergenic 30.0%
!!! AACCTTTTGGAATATAGCTT+GGG + chr3_1:79373056-79373075 None:intergenic 30.0%
!!! AAACCTTTTGGAATATAGCT+TGG + chr3_1:79373057-79373076 None:intergenic 30.0%
AGCTATATTCCAAAAGGTTT+AGG - chr3_1:79373057-79373076 Msa0378540:CDS 30.0%
GCTATATTCCAAAAGGTTTA+GGG - chr3_1:79373058-79373077 Msa0378540:CDS 30.0%
! TATGAAATCCCTAAACCTTT+TGG + chr3_1:79373069-79373088 None:intergenic 30.0%
TTTCATACACAGAATCTTTG+TGG - chr3_1:79373082-79373101 Msa0378540:CDS 30.0%
GAAGCCTTGCTTATTATTAT+TGG - chr3_1:79373288-79373307 Msa0378540:CDS 30.0%
!!! TTTTGTAATGGTTTTGGAGA+AGG - chr3_1:79373476-79373495 Msa0378540:CDS 30.0%
!!! TTTGTAATGGTTTTGGAGAA+GGG - chr3_1:79373477-79373496 Msa0378540:CDS 30.0%
TAGAAAAATGTGAATGCATG+TGG - chr3_1:79373514-79373533 Msa0378540:CDS 30.0%
ATACAGTCAAAGATGGATAA+TGG - chr3_1:79373586-79373605 Msa0378540:CDS 30.0%
TTTGGTCACGTAATATGAAT+CGG - chr3_1:79373987-79374006 Msa0378540:five_prime_UTR 30.0%
!!! GACATATATTTTGAAACGGA+TGG + chr3_1:79374140-79374159 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr3_1:79374162-79374181 None:intergenic 30.0%
! GTGTAATGGAATGGATTCAT+TGG + chr3_1:79369047-79369066 None:intergenic 35.0%
! TTTGTGTGAGTGTAATGGAA+TGG + chr3_1:79369056-79369075 None:intergenic 35.0%
!! TTTGGTTTGTGTGAGTGTAA+TGG + chr3_1:79369061-79369080 None:intergenic 35.0%
! ATGGTTGGGACCTAAAATTT+TGG + chr3_1:79369079-79369098 None:intergenic 35.0%
ACATTGCTGCTAAAGTTTGA+AGG + chr3_1:79369261-79369280 None:intergenic 35.0%
!! TCTTTGCATTTGTGTTTTGG+TGG + chr3_1:79369384-79369403 None:intergenic 35.0%
CACAAATGCAAAGAAAAACG+AGG - chr3_1:79369390-79369409 Msa0378540:three_prime_UTR 35.0%
TGCAAAGAAAAACGAGGAAA+TGG - chr3_1:79369396-79369415 Msa0378540:three_prime_UTR 35.0%
!!! TTTGGAAGGTGTTTTTCTAC+TGG + chr3_1:79369487-79369506 None:intergenic 35.0%
GTAGAAAAACACCTTCCAAA+CGG - chr3_1:79369487-79369506 Msa0378540:three_prime_UTR 35.0%
GTATACAGTGGAAGTTTATC+AGG - chr3_1:79369514-79369533 Msa0378540:three_prime_UTR 35.0%
AATGGAAGAAAGGTAAAGCA+TGG - chr3_1:79369596-79369615 Msa0378540:three_prime_UTR 35.0%
ATGGAAGAAAGGTAAAGCAT+GGG - chr3_1:79369597-79369616 Msa0378540:three_prime_UTR 35.0%
!! TGATTTTATTTCAGGGTCCA+TGG - chr3_1:79369663-79369682 Msa0378540:three_prime_UTR 35.0%
GTGGAAGGTGATACTTATAA+AGG - chr3_1:79369709-79369728 Msa0378540:three_prime_UTR 35.0%
GGTGAGAAATGTTATGCTAA+TGG - chr3_1:79369763-79369782 Msa0378540:three_prime_UTR 35.0%
! TATGTTGGTGAATGGAAATG+TGG - chr3_1:79369862-79369881 Msa0378540:three_prime_UTR 35.0%
AAGAATGGGAATCGTTATGT+GGG - chr3_1:79369916-79369935 Msa0378540:three_prime_UTR 35.0%
ATTTGTATTTGGGAGCTTGA+TGG - chr3_1:79370084-79370103 Msa0378540:three_prime_UTR 35.0%
TTTGTATTTGGGAGCTTGAT+GGG - chr3_1:79370085-79370104 Msa0378540:three_prime_UTR 35.0%
TTGATCCAAAGGAGAAATTC+TGG - chr3_1:79370495-79370514 Msa0378540:intron 35.0%
! TCTAAAATCCACCGATTGAT+GGG + chr3_1:79370558-79370577 None:intergenic 35.0%
! ATCTAAAATCCACCGATTGA+TGG + chr3_1:79370559-79370578 None:intergenic 35.0%
!! ATCAATCGGTGGATTTTAGA+TGG - chr3_1:79370558-79370577 Msa0378540:intron 35.0%
! GTGGTTGTTTGTTTCTTTGT+TGG - chr3_1:79370694-79370713 Msa0378540:intron 35.0%
TTGGGTATTTAGGCATTTGA+GGG - chr3_1:79370713-79370732 Msa0378540:intron 35.0%
!! GATTACATGCTTGCTATTTG+TGG - chr3_1:79370759-79370778 Msa0378540:intron 35.0%
TTTGTGGCAATGATACATTG+AGG - chr3_1:79370775-79370794 Msa0378540:intron 35.0%
TTGTGGCAATGATACATTGA+GGG - chr3_1:79370776-79370795 Msa0378540:intron 35.0%
CCAACTAATCATTGAAACAG+AGG + chr3_1:79371024-79371043 None:intergenic 35.0%
CCTCTGTTTCAATGATTAGT+TGG - chr3_1:79371021-79371040 Msa0378540:intron 35.0%
! CTGTTTCAATGATTAGTTGG+TGG - chr3_1:79371024-79371043 Msa0378540:intron 35.0%
GTTCATTGTGTCAAACCTAT+TGG - chr3_1:79371134-79371153 Msa0378540:intron 35.0%
ACAGACCCGATTTATTGTAA+TGG - chr3_1:79371259-79371278 Msa0378540:intron 35.0%
CAGACCCGATTTATTGTAAT+GGG - chr3_1:79371260-79371279 Msa0378540:intron 35.0%
!! AATGGGCAATGTGTTTTGTT+CGG - chr3_1:79371277-79371296 Msa0378540:intron 35.0%
GAAAGGCAAAACTAAGATCA+AGG + chr3_1:79371403-79371422 None:intergenic 35.0%
CTTGGTTTCAAGAGCTAAAA+TGG - chr3_1:79371435-79371454 Msa0378540:CDS 35.0%
!! ATGGACTACAGTTTTCTCAT+TGG - chr3_1:79371593-79371612 Msa0378540:CDS 35.0%
ATACCAGAACACAACTCATT+AGG + chr3_1:79371665-79371684 None:intergenic 35.0%
ATGAAAGGAAACATGGAACT+AGG + chr3_1:79371705-79371724 None:intergenic 35.0%
ATCGGACAAATTCACATGAA+AGG + chr3_1:79371720-79371739 None:intergenic 35.0%
TCCAAGGGTTAAAAGATTTG+TGG - chr3_1:79371739-79371758 Msa0378540:intron 35.0%
CCAAGGGTTAAAAGATTTGT+GGG - chr3_1:79371740-79371759 Msa0378540:intron 35.0%
! ATAAAGTGAAGAGTGCATAC+CGG + chr3_1:79371837-79371856 None:intergenic 35.0%
! TCCCAAAGAGATAAGTTTTG+AGG - chr3_1:79371961-79371980 Msa0378540:CDS 35.0%
TTATGGGAATGTGGATTCAT+GGG - chr3_1:79372078-79372097 Msa0378540:intron 35.0%
TAGACTAAAGCTCAAGAACA+TGG + chr3_1:79372218-79372237 None:intergenic 35.0%
! TTCTTGAGCTTTAGTCTATC+TGG - chr3_1:79372220-79372239 Msa0378540:intron 35.0%
TGCTTCTATTTGCATTATGG+CGG + chr3_1:79372248-79372267 None:intergenic 35.0%
GTCATGTAGAAATAAAGCAG+TGG - chr3_1:79372343-79372362 Msa0378540:intron 35.0%
CACTTCTAAATCACAGATAG+AGG + chr3_1:79372392-79372411 None:intergenic 35.0%
CATGACAAATCAAGTCATTG+TGG + chr3_1:79372442-79372461 None:intergenic 35.0%
!! CACAATGACTTGATTTGTCA+TGG - chr3_1:79372440-79372459 Msa0378540:CDS 35.0%
TGATATTGATAGAGCAATGG+TGG - chr3_1:79372552-79372571 Msa0378540:intron 35.0%
ATCCCAAGCTATATTCCAAA+AGG - chr3_1:79373051-79373070 Msa0378540:CDS 35.0%
TTTGTGGAGGACAAATAACA+TGG - chr3_1:79373098-79373117 Msa0378540:CDS 35.0%
TAGCATCAGAATATATGAGC+TGG - chr3_1:79373184-79373203 Msa0378540:CDS 35.0%
ATTCCAAGTTTGGAAAGGAA+AGG - chr3_1:79373266-79373285 Msa0378540:CDS 35.0%
GCCTTGCTTATTATTATTGG+TGG - chr3_1:79373291-79373310 Msa0378540:CDS 35.0%
GCCACCAATAATAATAAGCA+AGG + chr3_1:79373295-79373314 None:intergenic 35.0%
! TTTCTCATAGCCTTTGGAAA+TGG - chr3_1:79373321-79373340 Msa0378540:CDS 35.0%
TGTACATGCTATGCATCATA+AGG - chr3_1:79373426-79373445 Msa0378540:CDS 35.0%
! TTTGGAGAAGGGTATAGTAT+AGG - chr3_1:79373488-79373507 Msa0378540:CDS 35.0%
! TTGGAGAAGGGTATAGTATA+GGG - chr3_1:79373489-79373508 Msa0378540:CDS 35.0%
ACTGTACATACAGTCAAAGA+TGG - chr3_1:79373579-79373598 Msa0378540:CDS 35.0%
CATCTTTGGTTGCATTGAAT+TGG - chr3_1:79373646-79373665 Msa0378540:CDS 35.0%
TGAATTGGAGAGAGATCAAA+AGG - chr3_1:79373661-79373680 Msa0378540:CDS 35.0%
AGAAAGAAAAGTTCCTACAG+AGG - chr3_1:79373705-79373724 Msa0378540:CDS 35.0%
TCTGTTGTGTGCATTCAAAT+GGG - chr3_1:79373757-79373776 Msa0378540:CDS 35.0%
! AGAAAAGCACAAGAAAGAGT+TGG - chr3_1:79373825-79373844 Msa0378540:CDS 35.0%
! GAAAAGCACAAGAAAGAGTT+GGG - chr3_1:79373826-79373845 Msa0378540:CDS 35.0%
ACGCGACAAAGCAATAAATT+TGG - chr3_1:79373969-79373988 Msa0378540:five_prime_UTR 35.0%
TCACGTAATATGAATCGGTT+TGG - chr3_1:79373992-79374011 Msa0378540:five_prime_UTR 35.0%
! ATACAAAAGCACAAGAAGCA+TGG + chr3_1:79374038-79374057 None:intergenic 35.0%
AGAAACTTGGCATAAAAGAG+AGG - chr3_1:79374084-79374103 Msa0378540:five_prime_UTR 35.0%
GAAGTGGTTGTGTAATGGTT+GGG + chr3_1:79369093-79369112 None:intergenic 40.0%
TAGTGGAAGTGGTTGTGTAA+TGG + chr3_1:79369098-79369117 None:intergenic 40.0%
!! GTGAAATTTGGTAGTGGAAG+TGG + chr3_1:79369109-79369128 None:intergenic 40.0%
TTCCACTACCAAATTTCACG+TGG - chr3_1:79369110-79369129 Msa0378540:three_prime_UTR 40.0%
TTCCACGTGAAATTTGGTAG+TGG + chr3_1:79369115-79369134 None:intergenic 40.0%
!!! ATTTTTGGGTAGTAGTGAGG+TGG + chr3_1:79369149-79369168 None:intergenic 40.0%
!!! GACATTTTTGGGTAGTAGTG+AGG + chr3_1:79369152-79369171 None:intergenic 40.0%
AAAGTTTGAAGGAGTAGAGG+AGG + chr3_1:79369250-79369269 None:intergenic 40.0%
GCTAAAGTTTGAAGGAGTAG+AGG + chr3_1:79369253-79369272 None:intergenic 40.0%
!!! TTGCATTTGTGTTTTGGTGG+TGG + chr3_1:79369381-79369400 None:intergenic 40.0%
TTATCAGGAAACACACCACA+CGG - chr3_1:79369529-79369548 Msa0378540:three_prime_UTR 40.0%
ACGGCAAAGGTAAATACGTA+TGG - chr3_1:79369548-79369567 Msa0378540:three_prime_UTR 40.0%
GGTAAATACGTATGGAACGA+TGG - chr3_1:79369556-79369575 Msa0378540:three_prime_UTR 40.0%
TACCAAGGAGAATGGAAGAA+AGG - chr3_1:79369586-79369605 Msa0378540:three_prime_UTR 40.0%
TACCTTTCTTCCATTCTCCT+TGG + chr3_1:79369591-79369610 None:intergenic 40.0%
TGGAAGAAAGGTAAAGCATG+GGG - chr3_1:79369598-79369617 Msa0378540:three_prime_UTR 40.0%
TTTATTTCAGGGTCCATGGA+AGG - chr3_1:79369667-79369686 Msa0378540:three_prime_UTR 40.0%
AAAAGTTCCAGAACCTTCCA+TGG + chr3_1:79369683-79369702 None:intergenic 40.0%
!!! GAAGGTTCTGGAACTTTTGT+TGG - chr3_1:79369685-79369704 Msa0378540:three_prime_UTR 40.0%
!!! TTCTGGAACTTTTGTTGGTG+TGG - chr3_1:79369690-79369709 Msa0378540:three_prime_UTR 40.0%
AAGGTTCTTGGGTTTCTGAT+AGG - chr3_1:79369728-79369747 Msa0378540:three_prime_UTR 40.0%
TGGGTTTCTGATAGGAAACA+TGG - chr3_1:79369736-79369755 Msa0378540:three_prime_UTR 40.0%
GGGTTTCTGATAGGAAACAT+GGG - chr3_1:79369737-79369756 Msa0378540:three_prime_UTR 40.0%
TCTGATAGGAAACATGGGTT+TGG - chr3_1:79369742-79369761 Msa0378540:three_prime_UTR 40.0%
! TGCTAATGGTGATGTGTATG+AGG - chr3_1:79369777-79369796 Msa0378540:three_prime_UTR 40.0%
! GCTAATGGTGATGTGTATGA+GGG - chr3_1:79369778-79369797 Msa0378540:three_prime_UTR 40.0%
! TGGAGGTACAATTTGCAAGA+TGG - chr3_1:79369805-79369824 Msa0378540:three_prime_UTR 40.0%
! GGAGGTACAATTTGCAAGAT+GGG - chr3_1:79369806-79369825 Msa0378540:three_prime_UTR 40.0%
GAGGTACAATTTGCAAGATG+GGG - chr3_1:79369807-79369826 Msa0378540:three_prime_UTR 40.0%
TACAATTTGCAAGATGGGGA+AGG - chr3_1:79369811-79369830 Msa0378540:three_prime_UTR 40.0%
ACAATTTGCAAGATGGGGAA+GGG - chr3_1:79369812-79369831 Msa0378540:three_prime_UTR 40.0%
AGGAATGGGAATGAGTATGT+TGG - chr3_1:79369847-79369866 Msa0378540:three_prime_UTR 40.0%
! GGAATGAGTATGTTGGTGAA+TGG - chr3_1:79369854-79369873 Msa0378540:three_prime_UTR 40.0%
!! TGGAAATGTGGTGCTATATG+TGG - chr3_1:79369874-79369893 Msa0378540:three_prime_UTR 40.0%
!! TGTGGTGCTATATGTGGTAA+TGG - chr3_1:79369880-79369899 Msa0378540:three_prime_UTR 40.0%
GAAGAATGGGAATCGTTATG+TGG - chr3_1:79369915-79369934 Msa0378540:three_prime_UTR 40.0%
! GAATCGTTATGTGGGTTGTT+GGG - chr3_1:79369924-79369943 Msa0378540:three_prime_UTR 40.0%
GTAAACACACCTTTCCCTTT+CGG + chr3_1:79369961-79369980 None:intergenic 40.0%
GAGTGTTTCATCAGGGAATT+GGG - chr3_1:79369993-79370012 Msa0378540:three_prime_UTR 40.0%
AGTGTTTCATCAGGGAATTG+GGG - chr3_1:79369994-79370013 Msa0378540:three_prime_UTR 40.0%
!! CTAAGAGTGTGGTTTTTCCT+AGG - chr3_1:79370061-79370080 Msa0378540:three_prime_UTR 40.0%
AGCTCCCAAATACAAATCCT+AGG + chr3_1:79370081-79370100 None:intergenic 40.0%
TTGTATTTGGGAGCTTGATG+GGG - chr3_1:79370086-79370105 Msa0378540:three_prime_UTR 40.0%
GATGGAAGTGAATCAGAGAT+TGG - chr3_1:79370168-79370187 Msa0378540:CDS 40.0%
!! AGTCCTTGTTATTCGATCGA+TGG - chr3_1:79370234-79370253 Msa0378540:CDS 40.0%
!! GTCCTTGTTATTCGATCGAT+GGG - chr3_1:79370235-79370254 Msa0378540:CDS 40.0%
!! TCCTTGTTATTCGATCGATG+GGG - chr3_1:79370236-79370255 Msa0378540:CDS 40.0%
ACCGGGTTATACTGTTTGTA+AGG - chr3_1:79370269-79370288 Msa0378540:CDS 40.0%
CCCTTACAAACAGTATAACC+CGG + chr3_1:79370273-79370292 None:intergenic 40.0%
CCGGGTTATACTGTTTGTAA+GGG - chr3_1:79370270-79370289 Msa0378540:CDS 40.0%
!! GTCAGGAGATTTTGATCCAA+AGG - chr3_1:79370484-79370503 Msa0378540:intron 40.0%
CTTGTCCAGAATTTCTCCTT+TGG + chr3_1:79370503-79370522 None:intergenic 40.0%
CAAAGGAGAAATTCTGGACA+AGG - chr3_1:79370501-79370520 Msa0378540:intron 40.0%
! CTAAAATCCACCGATTGATG+GGG + chr3_1:79370557-79370576 None:intergenic 40.0%
TTATTTCCACCTGAACACCA+CGG + chr3_1:79370597-79370616 None:intergenic 40.0%
!!! GATGTTTGTATTTTGGTGGG+TGG - chr3_1:79370675-79370694 Msa0378540:intron 40.0%
GTTGGGTATTTAGGCATTTG+AGG - chr3_1:79370712-79370731 Msa0378540:intron 40.0%
ATGTCTTCTCCTGGAAAAAG+TGG - chr3_1:79370801-79370820 Msa0378540:intron 40.0%
!!! AAGAAGCTTCCACTTTTTCC+AGG + chr3_1:79370813-79370832 None:intergenic 40.0%
CAAATCGGTCATCTTGAGTA+AGG + chr3_1:79370839-79370858 None:intergenic 40.0%
CTTGACTTCAGACTTCTTCA+AGG + chr3_1:79370871-79370890 None:intergenic 40.0%
! CTTGAAGAAGTCTGAAGTCA+AGG - chr3_1:79370869-79370888 Msa0378540:intron 40.0%
TTCTCAGTACAAGAACTCGT+TGG - chr3_1:79371094-79371113 Msa0378540:intron 40.0%
! TCGTTGGTTACGAAATTCCT+GGG - chr3_1:79371110-79371129 Msa0378540:intron 40.0%
CATTGTGTCAAACCTATTGG+AGG - chr3_1:79371137-79371156 Msa0378540:intron 40.0%
! ACTAGGTAGTCCATACCTTT+TGG + chr3_1:79371163-79371182 None:intergenic 40.0%
CATAAGCGATTTGACCTCAA+AGG - chr3_1:79371311-79371330 Msa0378540:intron 40.0%
TCAAAGGTTCATCTCATGGT+CGG - chr3_1:79371327-79371346 Msa0378540:intron 40.0%
TCACCTAATGAGTTGTGTTC+TGG - chr3_1:79371659-79371678 Msa0378540:CDS 40.0%
AAAGGAAACATGGAACTAGG+AGG + chr3_1:79371702-79371721 None:intergenic 40.0%
ATGTGAATTTGTCCGATCCA+AGG - chr3_1:79371723-79371742 Msa0378540:intron 40.0%
TGTGAATTTGTCCGATCCAA+GGG - chr3_1:79371724-79371743 Msa0378540:intron 40.0%
! CCCACAAATCTTTTAACCCT+TGG + chr3_1:79371743-79371762 None:intergenic 40.0%
! TGTGGGATTATGGTTTTTGC+AGG - chr3_1:79371757-79371776 Msa0378540:intron 40.0%
CATGCAAAATGATGACACTC+AGG - chr3_1:79371789-79371808 Msa0378540:intron 40.0%
AGGATTTAGAAATGCTGGTG+CGG - chr3_1:79371981-79372000 Msa0378540:intron 40.0%
CAAAGTCACTTATGGGAATG+TGG - chr3_1:79372069-79372088 Msa0378540:intron 40.0%
CTTATGGGAATGTGGATTCA+TGG - chr3_1:79372077-79372096 Msa0378540:intron 40.0%
AAGTAAAAGAAATGACCCGG+TGG + chr3_1:79372184-79372203 None:intergenic 40.0%
GCTTCTATTTGCATTATGGC+GGG + chr3_1:79372247-79372266 None:intergenic 40.0%
! CCAATATTGCTAGTTTAGGG+TGG + chr3_1:79372279-79372298 None:intergenic 40.0%
CCACCCTAAACTAGCAATAT+TGG - chr3_1:79372276-79372295 Msa0378540:intron 40.0%
! GGGCCAATATTGCTAGTTTA+GGG + chr3_1:79372282-79372301 None:intergenic 40.0%
! TGGGCCAATATTGCTAGTTT+AGG + chr3_1:79372283-79372302 None:intergenic 40.0%
CTAAATCACAGATAGAGGAC+TGG + chr3_1:79372387-79372406 None:intergenic 40.0%
! TATGCTCCTGTTTGTTGAGA+TGG - chr3_1:79372415-79372434 Msa0378540:CDS 40.0%
TTTGACAACAAATGCTGGAG+TGG - chr3_1:79372483-79372502 Msa0378540:CDS 40.0%
ATTGATAGAGCAATGGTGGT+TGG - chr3_1:79372556-79372575 Msa0378540:intron 40.0%
AATTAACATGCCAGCAAGAG+CGG - chr3_1:79372830-79372849 Msa0378540:intron 40.0%
TGCATACAAGTCACTACAAG+TGG - chr3_1:79373004-79373023 Msa0378540:CDS 40.0%
GGAATATAGCTTGGGATCAA+CGG + chr3_1:79373048-79373067 None:intergenic 40.0%
CATACACAGAATCTTTGTGG+AGG - chr3_1:79373085-79373104 Msa0378540:CDS 40.0%
TGGAGGACAAATAACATGGT+TGG - chr3_1:79373102-79373121 Msa0378540:CDS 40.0%
ACAATATGAGAATTGAGCCC+TGG - chr3_1:79373131-79373150 Msa0378540:CDS 40.0%
CTTCCTTTCCTTTCCAAACT+TGG + chr3_1:79373272-79373291 None:intergenic 40.0%
! TAGCCTTTGGAAATGGAATG+AGG - chr3_1:79373328-79373347 Msa0378540:CDS 40.0%
! CTTTGGAAATGGAATGAGGT+GGG - chr3_1:79373332-79373351 Msa0378540:CDS 40.0%
TTTGGAAATGGAATGAGGTG+GGG - chr3_1:79373333-79373352 Msa0378540:CDS 40.0%
AAATGTGAATGCATGTGGAG+TGG - chr3_1:79373519-79373538 Msa0378540:CDS 40.0%
AATGTGAATGCATGTGGAGT+GGG - chr3_1:79373520-79373539 Msa0378540:CDS 40.0%
GAGGGATTCAAATTTGACCA+TGG - chr3_1:79373542-79373561 Msa0378540:CDS 40.0%
GGATTCAAATTTGACCATGG+TGG - chr3_1:79373545-79373564 Msa0378540:CDS 40.0%
TTCAAATTTGACCATGGTGG+TGG - chr3_1:79373548-79373567 Msa0378540:CDS 40.0%
TCAAATTTGACCATGGTGGT+GGG - chr3_1:79373549-79373568 Msa0378540:CDS 40.0%
! TCAAAAGGAGATGATTTGCC+TGG - chr3_1:79373676-79373695 Msa0378540:CDS 40.0%
! ACTTTTCTTTCTTGCTCACC+AGG + chr3_1:79373697-79373716 None:intergenic 40.0%
CTAGAAACTGACAGAATGAG+GGG + chr3_1:79373732-79373751 None:intergenic 40.0%
GCTAGAAACTGACAGAATGA+GGG + chr3_1:79373733-79373752 None:intergenic 40.0%
AGCTAGAAACTGACAGAATG+AGG + chr3_1:79373734-79373753 None:intergenic 40.0%
CTCTGTTGTGTGCATTCAAA+TGG - chr3_1:79373756-79373775 Msa0378540:CDS 40.0%
GAAAGAGTTGGGTGTTTCTT+TGG - chr3_1:79373837-79373856 Msa0378540:CDS 40.0%
!! TTGTCGCGTTGATTGTTTCT+TGG + chr3_1:79373958-79373977 None:intergenic 40.0%
GGAAGTGGTTGTGTAATGGT+TGG + chr3_1:79369094-79369113 None:intergenic 45.0%
! AGGTGTTTTTCTACTGGCGT+CGG + chr3_1:79369481-79369500 None:intergenic 45.0%
ACGTATTTACCTTTGCCGTG+TGG + chr3_1:79369547-79369566 None:intergenic 45.0%
AACGATGGATGCATGTACCA+AGG - chr3_1:79369571-79369590 Msa0378540:three_prime_UTR 45.0%
GATGCATGTACCAAGGAGAA+TGG - chr3_1:79369578-79369597 Msa0378540:three_prime_UTR 45.0%
GGAAGAAAGGTAAAGCATGG+GGG - chr3_1:79369599-79369618 Msa0378540:three_prime_UTR 45.0%
AAAGGTAAAGCATGGGGGAA+AGG - chr3_1:79369604-79369623 Msa0378540:three_prime_UTR 45.0%
AAGGTAAAGCATGGGGGAAA+GGG - chr3_1:79369605-79369624 Msa0378540:three_prime_UTR 45.0%
CCTTCATAAGTAGCTCCTGA+TGG + chr3_1:79369643-79369662 None:intergenic 45.0%
CCATCAGGAGCTACTTATGA+AGG - chr3_1:79369640-79369659 Msa0378540:three_prime_UTR 45.0%
! GGAACTTTTGTTGGTGTGGA+AGG - chr3_1:79369694-79369713 Msa0378540:three_prime_UTR 45.0%
! ATGGTGATGTGTATGAGGGT+TGG - chr3_1:79369782-79369801 Msa0378540:three_prime_UTR 45.0%
! GGAGGTATATGTGGAGGAAT+GGG - chr3_1:79369833-79369852 Msa0378540:three_prime_UTR 45.0%
! GGAATCGTTATGTGGGTTGT+TGG - chr3_1:79369923-79369942 Msa0378540:three_prime_UTR 45.0%
! TATGTGGGTTGTTGGGAGAA+TGG - chr3_1:79369931-79369950 Msa0378540:three_prime_UTR 45.0%
! AAGGGAAAGGTGTGTTTACG+TGG - chr3_1:79369962-79369981 Msa0378540:three_prime_UTR 45.0%
!! GTGATGGGAGTGTTTCATCA+GGG - chr3_1:79369986-79370005 Msa0378540:three_prime_UTR 45.0%
! GGAGTGTTTCATCAGGGAAT+TGG - chr3_1:79369992-79370011 Msa0378540:three_prime_UTR 45.0%
GTGTTTCATCAGGGAATTGG+GGG - chr3_1:79369995-79370014 Msa0378540:three_prime_UTR 45.0%
ACTCACAGAAACCCTCTTCT+TGG + chr3_1:79370028-79370047 None:intergenic 45.0%
GTTTCTGTGAGTGTGGATGA+TGG - chr3_1:79370036-79370055 Msa0378540:three_prime_UTR 45.0%
!! GGATGATGGTTCTAAGAGTG+TGG - chr3_1:79370050-79370069 Msa0378540:three_prime_UTR 45.0%
GGAAGTGAATCAGAGATTGG+TGG - chr3_1:79370171-79370190 Msa0378540:CDS 45.0%
!! GAATCAGAGATTGGTGGTGT+TGG - chr3_1:79370177-79370196 Msa0378540:CDS 45.0%
TCCCCATCGATCGAATAACA+AGG + chr3_1:79370240-79370259 None:intergenic 45.0%
CGATGGGGATGTTAAGAAAC+CGG - chr3_1:79370251-79370270 Msa0378540:CDS 45.0%
GATGGGGATGTTAAGAAACC+GGG - chr3_1:79370252-79370271 Msa0378540:CDS 45.0%
! TTGTGTTGGGAAGCATGCTT+CGG - chr3_1:79370445-79370464 Msa0378540:intron 45.0%
GTAAACTTGGAACCTTCTGG+AGG + chr3_1:79370530-79370549 None:intergenic 45.0%
TATTTCCACCTGAACACCAC+GGG + chr3_1:79370596-79370615 None:intergenic 45.0%
ATAGCAAGCATGTAATCGGC+AGG + chr3_1:79370756-79370775 None:intergenic 45.0%
TTGAGGGAAATGTCTTCTCC+TGG - chr3_1:79370792-79370811 Msa0378540:intron 45.0%
! CTCGTTGGTTACGAAATTCC+TGG - chr3_1:79371109-79371128 Msa0378540:intron 45.0%
GTTTGACACAATGAACTCCC+AGG + chr3_1:79371130-79371149 None:intergenic 45.0%
CAAACCTATTGGAGGCCAAA+AGG - chr3_1:79371145-79371164 Msa0378540:intron 45.0%
! CATACCTTTTGGCCTCCAAT+AGG + chr3_1:79371152-79371171 None:intergenic 45.0%
CTATTGGAGGCCAAAAGGTA+TGG - chr3_1:79371150-79371169 Msa0378540:intron 45.0%
GACCTCAAAGGTTCATCTCA+TGG - chr3_1:79371323-79371342 Msa0378540:intron 45.0%
GACCATGAGATGAACCTTTG+AGG + chr3_1:79371328-79371347 None:intergenic 45.0%
GACAACCGATAAACTCCGTA+AGG - chr3_1:79371349-79371368 Msa0378540:intron 45.0%
!!! TCTTAGTTTTGCCTTTCGCC+TGG - chr3_1:79371406-79371425 Msa0378540:intron 45.0%
TGATAGAGACTGTGAGTTCC+TGG - chr3_1:79371556-79371575 Msa0378540:intron 45.0%
GAATGTGGATTCATGGGACA+TGG - chr3_1:79372084-79372103 Msa0378540:intron 45.0%
TCTCTTCTGCTTTCATCCAC+CGG - chr3_1:79372165-79372184 Msa0378540:CDS 45.0%
! TTTGCTACTTGCATGCGCAT+GGG + chr3_1:79372302-79372321 None:intergenic 45.0%
TGTGGTCCATCTCAACAAAC+AGG + chr3_1:79372424-79372443 None:intergenic 45.0%
ATAGAGCAATGGTGGTTGGT+AGG - chr3_1:79372560-79372579 Msa0378540:intron 45.0%
GAAAGAGAGCCCAAGAGAAA+CGG + chr3_1:79372718-79372737 None:intergenic 45.0%
ATACCAGAGGACCTCTAATC+CGG - chr3_1:79372802-79372821 Msa0378540:intron 45.0%
! TTAATTCCCAGCCGGATTAG+AGG + chr3_1:79372816-79372835 None:intergenic 45.0%
! GAGAGTGTGTAAAGCTGGAT+TGG - chr3_1:79372854-79372873 Msa0378540:intron 45.0%
CCACCTCATTCCATTTCCAA+AGG + chr3_1:79373334-79373353 None:intergenic 45.0%
! CCTTTGGAAATGGAATGAGG+TGG - chr3_1:79373331-79373350 Msa0378540:CDS 45.0%
TTGGAAATGGAATGAGGTGG+GGG - chr3_1:79373334-79373353 Msa0378540:CDS 45.0%
! CAAATTTGACCATGGTGGTG+GGG - chr3_1:79373550-79373569 Msa0378540:CDS 45.0%
!! AAATTTGACCATGGTGGTGG+GGG - chr3_1:79373551-79373570 Msa0378540:CDS 45.0%
GTTTGAAGGAGTAGAGGAGG+AGG + chr3_1:79369247-79369266 None:intergenic 50.0%
TGTATACGTCGCCGTTTGGA+AGG + chr3_1:79369501-79369520 None:intergenic 50.0%
GGGGGAAAGGGAAATTCTCA+TGG - chr3_1:79369617-79369636 Msa0378540:three_prime_UTR 50.0%
GGGAAATTCTCATGGCCATC+AGG - chr3_1:79369625-79369644 Msa0378540:three_prime_UTR 50.0%
GTGATGTGTATGAGGGTTGG+TGG - chr3_1:79369785-79369804 Msa0378540:three_prime_UTR 50.0%
!! ATGTGTATGAGGGTTGGTGG+AGG - chr3_1:79369788-79369807 Msa0378540:three_prime_UTR 50.0%
ATTTGCAAGATGGGGAAGGG+AGG - chr3_1:79369815-79369834 Msa0378540:three_prime_UTR 50.0%
! ATGGGGAAGGGAGGTATATG+TGG - chr3_1:79369824-79369843 Msa0378540:three_prime_UTR 50.0%
! GGGAGGTATATGTGGAGGAA+TGG - chr3_1:79369832-79369851 Msa0378540:three_prime_UTR 50.0%
AATGGTGTGCCGAAAGGGAA+AGG - chr3_1:79369949-79369968 Msa0378540:three_prime_UTR 50.0%
GTGTGTTTACGTGGCGTGAT+GGG - chr3_1:79369971-79369990 Msa0378540:three_prime_UTR 50.0%
!! CGTGATGGGAGTGTTTCATC+AGG - chr3_1:79369985-79370004 Msa0378540:three_prime_UTR 50.0%
GGGGAATGATGCCAAGAAGA+GGG - chr3_1:79370014-79370033 Msa0378540:three_prime_UTR 50.0%
GAAGAGGGTTTCTGTGAGTG+TGG - chr3_1:79370029-79370048 Msa0378540:three_prime_UTR 50.0%
!! TCAGAGATTGGTGGTGTTGG+TGG - chr3_1:79370180-79370199 Msa0378540:CDS 50.0%
!! GTGTTGGTGGTGGTGATGTA+GGG - chr3_1:79370193-79370212 Msa0378540:CDS 50.0%
TGGACAAGGTTTCCTCCAGA+AGG - chr3_1:79370515-79370534 Msa0378540:intron 50.0%
GGCGTAAACTTGGAACCTTC+TGG + chr3_1:79370533-79370552 None:intergenic 50.0%
! TTGATGGGGAGGCGTAAACT+TGG + chr3_1:79370543-79370562 None:intergenic 50.0%
GTTTACGCCTCCCCATCAAT+CGG - chr3_1:79370544-79370563 Msa0378540:intron 50.0%
! AAATCCACCGATTGATGGGG+AGG + chr3_1:79370554-79370573 None:intergenic 50.0%
ATGGAAAGACTACTGTCCCG+TGG - chr3_1:79370577-79370596 Msa0378540:intron 50.0%
!! GATTAGTTGGTGGCCATGTC+AGG - chr3_1:79371034-79371053 Msa0378540:intron 50.0%
ATCCTGATGAGCACCTGACA+TGG + chr3_1:79371050-79371069 None:intergenic 50.0%
CTTGAAACCAAGACTGCTCC+AGG + chr3_1:79371427-79371446 None:intergenic 50.0%
TGTGAGTTCCTGGAAGCAGA+GGG - chr3_1:79371566-79371585 Msa0378540:intron 50.0%
CCATTATTCCCTCTGCTTCC+AGG + chr3_1:79371577-79371596 None:intergenic 50.0%
CCTGGAAGCAGAGGGAATAA+TGG - chr3_1:79371574-79371593 Msa0378540:CDS 50.0%
ATGACACTCAGGACACGAGA+TGG - chr3_1:79371800-79371819 Msa0378540:CDS 50.0%
GACACGAGATGGATACCCAT+AGG - chr3_1:79371811-79371830 Msa0378540:CDS 50.0%
! AAGAGTGCATACCGGCCTAT+GGG + chr3_1:79371829-79371848 None:intergenic 50.0%
CTCTTCTGCTTTCATCCACC+GGG - chr3_1:79372166-79372185 Msa0378540:CDS 50.0%
! CTTTGCTACTTGCATGCGCA+TGG + chr3_1:79372303-79372322 None:intergenic 50.0%
TGCGCATGCAAGTAGCAAAG+AGG - chr3_1:79372303-79372322 Msa0378540:intron 50.0%
GCGCATGCAAGTAGCAAAGA+GGG - chr3_1:79372304-79372323 Msa0378540:intron 50.0%
!! ATGGTGGTTGGTAGGACTTG+AGG - chr3_1:79372568-79372587 Msa0378540:intron 50.0%
! GTTGGTAGGACTTGAGGCTT+AGG - chr3_1:79372574-79372593 Msa0378540:intron 50.0%
CTGGCATGTTAATTCCCAGC+CGG + chr3_1:79372824-79372843 None:intergenic 50.0%
GGATTGGATCAGCAGCAAAC+TGG - chr3_1:79372870-79372889 Msa0378540:intron 50.0%
TCTACCCCTTCAGAGAGTAG+CGG - chr3_1:79372903-79372922 Msa0378540:intron 50.0%
TCTCACCGCTACTCTCTGAA+GGG + chr3_1:79372911-79372930 None:intergenic 50.0%
ATCTCACCGCTACTCTCTGA+AGG + chr3_1:79372912-79372931 None:intergenic 50.0%
TCAACGGCTGAGATGGATGT+GGG + chr3_1:79373032-79373051 None:intergenic 50.0%
ATCAACGGCTGAGATGGATG+TGG + chr3_1:79373033-79373052 None:intergenic 50.0%
ATTGAGCCCTGGACCAACTT+TGG - chr3_1:79373142-79373161 Msa0378540:CDS 50.0%
TGAATGCATGTGGAGTGGGA+GGG - chr3_1:79373524-79373543 Msa0378540:CDS 50.0%
! GGTTTGGTATGTGAGAGCGA+TGG - chr3_1:79374008-79374027 Msa0378540:five_prime_UTR 50.0%
TGAAGGAGTAGAGGAGGAGG+AGG + chr3_1:79369244-79369263 None:intergenic 55.0%
CCACTGTATACGTCGCCGTT+TGG + chr3_1:79369505-79369524 None:intergenic 55.0%
CCAAACGGCGACGTATACAG+TGG - chr3_1:79369502-79369521 Msa0378540:three_prime_UTR 55.0%
GGAAACACACCACACGGCAA+AGG - chr3_1:79369535-79369554 Msa0378540:three_prime_UTR 55.0%
TCAGGGTCCATGGAAGGTTC+TGG - chr3_1:79369673-79369692 Msa0378540:three_prime_UTR 55.0%
! GGGAAGGGAGGTATATGTGG+AGG - chr3_1:79369827-79369846 Msa0378540:three_prime_UTR 55.0%
TGGGAGAATGGTGTGCCGAA+AGG - chr3_1:79369943-79369962 Msa0378540:three_prime_UTR 55.0%
GGGAGAATGGTGTGCCGAAA+GGG - chr3_1:79369944-79369963 Msa0378540:three_prime_UTR 55.0%
GGTGTGTTTACGTGGCGTGA+TGG - chr3_1:79369970-79369989 Msa0378540:three_prime_UTR 55.0%
GGGGGAATGATGCCAAGAAG+AGG - chr3_1:79370013-79370032 Msa0378540:three_prime_UTR 55.0%
!! GAGATTGGTGGTGTTGGTGG+TGG - chr3_1:79370183-79370202 Msa0378540:CDS 55.0%
!! GGTGTTGGTGGTGGTGATGT+AGG - chr3_1:79370192-79370211 Msa0378540:CDS 55.0%
! GGTGGTGGTGATGTAGGGTA+TGG - chr3_1:79370198-79370217 Msa0378540:CDS 55.0%
TCTCCTGACCTAAGCTCTCG+AGG + chr3_1:79370473-79370492 None:intergenic 55.0%
ACTACTGTCCCGTGGTGTTC+AGG - chr3_1:79370585-79370604 Msa0378540:intron 55.0%
CTGTGAGTTCCTGGAAGCAG+AGG - chr3_1:79371565-79371584 Msa0378540:intron 55.0%
CGAGATGGATACCCATAGGC+CGG - chr3_1:79371815-79371834 Msa0378540:CDS 55.0%
! GAAGAGTGCATACCGGCCTA+TGG + chr3_1:79371830-79371849 None:intergenic 55.0%
AGAGGACCTCTAATCCGGCT+GGG - chr3_1:79372807-79372826 Msa0378540:intron 55.0%
! GCGGAGAGAGTGTGTAAAGC+TGG - chr3_1:79372849-79372868 Msa0378540:intron 55.0%
! CTCACCGCTACTCTCTGAAG+GGG + chr3_1:79372910-79372929 None:intergenic 55.0%
CAACGGCTGAGATGGATGTG+GGG + chr3_1:79373031-79373050 None:intergenic 55.0%
CTTGGGATCAACGGCTGAGA+TGG + chr3_1:79373039-79373058 None:intergenic 55.0%
! CCCATGCCAAAGTTGGTCCA+GGG + chr3_1:79373151-79373170 None:intergenic 55.0%
CCCTGGACCAACTTTGGCAT+GGG - chr3_1:79373148-79373167 Msa0378540:CDS 55.0%
CCTGGACCAACTTTGGCATG+GGG - chr3_1:79373149-79373168 Msa0378540:CDS 55.0%
GTGTGTCCCCATGCCAAAGT+TGG + chr3_1:79373158-79373177 None:intergenic 55.0%
GGGGGACATCAGACATGACA+AGG - chr3_1:79373352-79373371 Msa0378540:CDS 55.0%
GTGAATGCATGTGGAGTGGG+AGG - chr3_1:79373523-79373542 Msa0378540:CDS 55.0%
AGTATTTGCCCCCACCACCA+TGG + chr3_1:79373562-79373581 None:intergenic 55.0%
CAGAATGAGGGGTCCTCTGT+AGG + chr3_1:79373721-79373740 None:intergenic 55.0%
TGGGAGCTTGATGGGGAAGC+TGG - chr3_1:79370093-79370112 Msa0378540:three_prime_UTR 60.0%
!! CTTCGGTGCCTCGAGAGCTT+AGG - chr3_1:79370462-79370481 Msa0378540:intron 60.0%
GTGCCTCGAGAGCTTAGGTC+AGG - chr3_1:79370467-79370486 Msa0378540:intron 60.0%
TACGCCTCCCCATCAATCGG+TGG - chr3_1:79370547-79370566 Msa0378540:intron 60.0%
ACTGTCCCGTGGTGTTCAGG+TGG - chr3_1:79370588-79370607 Msa0378540:intron 60.0%
GGCCATGTCAGGTGCTCATC+AGG - chr3_1:79371045-79371064 Msa0378540:intron 60.0%
CCAAGACTGCTCCAGGCGAA+AGG + chr3_1:79371420-79371439 None:intergenic 60.0%
CCTTTCGCCTGGAGCAGTCT+TGG - chr3_1:79371417-79371436 Msa0378540:CDS 60.0%
! CAGCCGGATTAGAGGTCCTC+TGG + chr3_1:79372808-79372827 None:intergenic 60.0%
CAGAGGACCTCTAATCCGGC+TGG - chr3_1:79372806-79372825 Msa0378540:intron 60.0%
CACACTCTCTCCGCTCTTGC+TGG + chr3_1:79372843-79372862 None:intergenic 60.0%
GCCCTGGACCAACTTTGGCA+TGG - chr3_1:79373147-79373166 Msa0378540:CDS 60.0%
! CCCCATGCCAAAGTTGGTCC+AGG + chr3_1:79373152-79373171 None:intergenic 60.0%
GTTCGCGGTGGTCGACGGCA+TGG + chr3_1:79369445-79369464 None:intergenic 70.0%
GCCGTCGACCACCGCGAACA+CGG - chr3_1:79369446-79369465 Msa0378540:three_prime_UTR 70.0%
GCCGTGTTCGCGGTGGTCGA+CGG + chr3_1:79369450-79369469 None:intergenic 70.0%
GGTGACACGCGCCGTGTTCG+CGG + chr3_1:79369460-79369479 None:intergenic 70.0%
GACACGCGCCGTGTTCGCGG+TGG + chr3_1:79369457-79369476 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79369018 79374233 79369018 ID=Msa0378540;Name=Msa0378540
chr3_1 mRNA 79369018 79374233 79369018 ID=Msa0378540-mRNA-1;Parent=Msa0378540;Name=Msa0378540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=328|1|1|1|1|1|8|1118|707
chr3_1 exon 79369018 79370442 79369018 ID=Msa0378540-mRNA-1:exon:19436;Parent=Msa0378540-mRNA-1
chr3_1 exon 79371415 79371472 79371415 ID=Msa0378540-mRNA-1:exon:19435;Parent=Msa0378540-mRNA-1
chr3_1 exon 79371571 79371701 79371571 ID=Msa0378540-mRNA-1:exon:19434;Parent=Msa0378540-mRNA-1
chr3_1 exon 79371795 79371988 79371795 ID=Msa0378540-mRNA-1:exon:19433;Parent=Msa0378540-mRNA-1
chr3_1 exon 79372085 79372195 79372085 ID=Msa0378540-mRNA-1:exon:19432;Parent=Msa0378540-mRNA-1
chr3_1 exon 79372361 79372526 79372361 ID=Msa0378540-mRNA-1:exon:19431;Parent=Msa0378540-mRNA-1
chr3_1 exon 79372645 79372809 79372645 ID=Msa0378540-mRNA-1:exon:19430;Parent=Msa0378540-mRNA-1
chr3_1 exon 79372914 79374233 79372914 ID=Msa0378540-mRNA-1:exon:19429;Parent=Msa0378540-mRNA-1
chr3_1 five_prime_UTR 79373906 79374233 79373906 ID=Msa0378540-mRNA-1:five_prime_utr;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79372914 79373905 79372914 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79372645 79372809 79372645 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79372361 79372526 79372361 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79372085 79372195 79372085 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79371795 79371988 79371795 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79371571 79371701 79371571 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79371415 79371472 79371415 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 CDS 79370136 79370442 79370136 ID=Msa0378540-mRNA-1:cds;Parent=Msa0378540-mRNA-1
chr3_1 three_prime_UTR 79369018 79370135 79369018 ID=Msa0378540-mRNA-1:three_prime_utr;Parent=Msa0378540-mRNA-1
Gene Sequence

>Msa0378540

ATGCAAGAAACATTATTAACTATTTCGGAGCACCACCACCAAAACACAAATGCAAAGAAAAACGAGGAAATGGAAGTAGTAATAGTATCATCATCACCATGCCGTCGACCACCGCGAACACGGCGCGTGTCACCGACGCCAGTAGAAAAACACCTTCCAAACGGCGACGTATACAGTGGAAGTTTATCAGGAAACACACCACACGGCAAAGGTAAATACGTATGGAACGATGGATGCATGTACCAAGGAGAATGGAAGAAAGGTAAAGCATGGGGGAAAGGGAAATTCTCATGGCCATCAGGAGCTACTTATGAAGGTGATTTTATTTCAGGGTCCATGGAAGGTTCTGGAACTTTTGTTGGTGTGGAAGGTGATACTTATAAAGGTTCTTGGGTTTCTGATAGGAAACATGGGTTTGGTGAGAAATGTTATGCTAATGGTGATGTGTATGAGGGTTGGTGGAGGTACAATTTGCAAGATGGGGAAGGGAGGTATATGTGGAGGAATGGGAATGAGTATGTTGGTGAATGGAAATGTGGTGCTATATGTGGTAATGGTGTTTTAATTTGGAAGAATGGGAATCGTTATGTGGGTTGTTGGGAGAATGGTGTGCCGAAAGGGAAAGGTGTGTTTACGTGGCGTGATGGGAGTGTTTCATCAGGGAATTGGGGGAATGATGCCAAGAAGAGGGTTTCTGTGAGTGTGGATGATGGTTCTAAGAGTGTGGTTTTTCCTAGGATTTGTATTTGGGAGCTTGATGGGGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTGGAAGCTTGTATGTTTTATAGAGATGGAAGTGAATCAGAGATTGGTGGTGTTGGTGGTGGTGATGTAGGGTATGGACATTCACATAAGAGTCCTTGTTATTCGATCGATGGGGATGTTAAGAAACCGGGTTATACTGTTTGTAAGGGACATAAGAACTATGATTTGATTCTTAATCTTCAATTGGGTATTAGATATTGTGTTGGGAAGCATGCTTCGGTGCCTCGAGAGCTTAGGTCAGGAGATTTTGATCCAAAGGAGAAATTCTGGACAAGGTTTCCTCCAGAAGGTTCCAAGTTTACGCCTCCCCATCAATCGGTGGATTTTAGATGGAAAGACTACTGTCCCGTGGTGTTCAGGCATTTGAGGGAATTATTTGCGATTGATCCTGCCGATTACATGCTTGCTATTTGTGGCAATGATACATTGAGGGAAATGTCTTCTCCTGGAAAAAGTGGAAGCTTCTTTTACCTTACTCAAGATGACCGATTTGTAATCAAAACCTTGAAGAAGTCTGAAGTCAAGGTGCTCATCAGGATGCTTCCCAGTTACTATCAACATGTTTCTCAGTACAAGAACTCGTTGGTTACGAAATTCCTGGGAGTTCATTGTGTCAAACCTATTGGAGGCCAAAAGACCCGATTTATTGTAATGGGCAATGTGTTTTGTTCGGAGTATCGAATTCATAAGCGATTTGACCTCAAAGGTTCATCTCATGGTCGGACAACCGATAAACTCCGTAAGGATATTGATGAGACTACTACTCTTAAAGACCTTGATCTTAGTTTTGCCTTTCGCCTGGAGCAGTCTTGGTTTCAAGAGCTAAAATGGCAACTTGATAGAGACTGTGAGTTCCTGGAAGCAGAGGGAATAATGGACTACAGTTTTCTCATTGGCCTTCATTTTCGTGATGATTACTCATCGGATGAAATGAAAAGTTCACCTAATGAGTTGTGTTCTGGCAAGAGAGACATGCAAAATGATGACACTCAGGACACGAGATGGATACCCATAGGCCGAGGACCTCTAATCCGGCTGGGAATTAACATGCCAGCAAGAGCGGAGAGAGTGTGTAAAGCTGGATTGGATCAGCAGCAAACTGGAAGTAGCAAATCTACCCCTTCAGAGAGTAGCGGTGAGATCTCTGATGTAATCCTTTATTTTGGCATCATTGACATTCTCCAAGATTATGATATTAGCAAAAAGCTAGAGCATGCATACAAGTCACTACAAGTGGACCCCACATCCATCTCAGCCGTTGATCCCAAGCTATATTCCAAAAGGTTTAGGGATTTCATACACAGAATCTTTGTGGAGGACAAATAA
Protein sequence

>Msa0378540

MQETLLTISEHHHQNTNAKKNEEMEVVIVSSSPCRRPPRTRRVSPTPVEKHLPNGDVYSGSLSGNTPHGKGKYVWNDGCMYQGEWKKGKAWGKGKFSWPSGATYEGDFISGSMEGSGTFVGVEGDTYKGSWVSDRKHGFGEKCYANGDVYEGWWRYNLQDGEGRYMWRNGNEYVGEWKCGAICGNGVLIWKNGNRYVGCWENGVPKGKGVFTWRDGSVSSGNWGNDAKKRVSVSVDDGSKSVVFPRICIWELDGEAGDITCDIVDNVEACMFYRDGSESEIGGVGGGDVGYGHSHKSPCYSIDGDVKKPGYTVCKGHKNYDLILNLQLGIRYCVGKHASVPRELRSGDFDPKEKFWTRFPPEGSKFTPPHQSVDFRWKDYCPVVFRHLRELFAIDPADYMLAICGNDTLREMSSPGKSGSFFYLTQDDRFVIKTLKKSEVKVLIRMLPSYYQHVSQYKNSLVTKFLGVHCVKPIGGQKTRFIVMGNVFCSEYRIHKRFDLKGSSHGRTTDKLRKDIDETTTLKDLDLSFAFRLEQSWFQELKWQLDRDCEFLEAEGIMDYSFLIGLHFRDDYSSDEMKSSPNELCSGKRDMQNDDTQDTRWIPIGRGPLIRLGINMPARAERVCKAGLDQQQTGSSKSTPSESSGEISDVILYFGIIDILQDYDISKKLEHAYKSLQVDPTSISAVDPKLYSKRFRDFIHRIFVEDK*