Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309400 | XP_003626737.1 | 93.617 | 141 | 9 | 0 | 1 | 141 | 144 | 284 | 2.15e-90 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309400 | sp|D7SSD8|MJE1_VITVI | 45.390 | 141 | 73 | 3 | 1 | 141 | 124 | 260 | 5.71e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309400 | G7LBP1 | 93.617 | 141 | 9 | 0 | 1 | 141 | 144 | 284 | 1.03e-90 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628200 | Msa1309400 | 0.824057 | 9.920417e-54 | -8.615850e-47 |
| Msa0644340 | Msa1309400 | 0.804953 | 1.686196e-49 | -8.615850e-47 |
| Msa0802600 | Msa1309400 | 0.814582 | 1.431596e-51 | -8.615850e-47 |
| Msa1269200 | Msa1309400 | 0.811905 | 5.540547e-51 | -8.615850e-47 |
| Msa1273320 | Msa1309400 | 0.817412 | 3.342204e-52 | -8.615850e-47 |
| Msa0459930 | Msa1309400 | 0.801419 | 9.085109e-49 | -8.615850e-47 |
| Msa0993690 | Msa1309400 | 0.893663 | 5.094658e-75 | -8.615850e-47 |
| Msa0993710 | Msa1309400 | 0.810144 | 1.334181e-50 | -8.615850e-47 |
| Msa1035050 | Msa1309400 | 0.807731 | 4.379921e-50 | -8.615850e-47 |
| Msa1075090 | Msa1309400 | 0.809560 | 1.781718e-50 | -8.615850e-47 |
| Msa1100330 | Msa1309400 | 0.807139 | 5.847506e-50 | -8.615850e-47 |
| Msa0320170 | Msa1309400 | 0.809443 | 1.887119e-50 | -8.615850e-47 |
| Msa1107220 | Msa1309400 | 0.802449 | 5.580796e-49 | -8.615850e-47 |
| Msa1160540 | Msa1309400 | 0.807341 | 5.300256e-50 | -8.615850e-47 |
| Msa1191270 | Msa1309400 | 0.814827 | 1.263503e-51 | -8.615850e-47 |
| Msa0588040 | Msa1309400 | 0.803582 | 3.254450e-49 | -8.615850e-47 |
| Msa0597820 | Msa1309400 | 0.803805 | 2.925153e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309400 | MtrunA17_Chr8g0336401 | 93.617 | 141 | 9 | 0 | 1 | 141 | 144 | 284 | 1.98e-94 | 274 |
| Msa1309400 | MtrunA17_Chr8g0336411 | 87.234 | 141 | 15 | 1 | 1 | 141 | 144 | 281 | 3.99e-86 | 253 |
| Msa1309400 | MtrunA17_Chr3g0104871 | 74.815 | 135 | 34 | 0 | 7 | 141 | 136 | 270 | 1.34e-68 | 208 |
| Msa1309400 | MtrunA17_Chr8g0336441 | 73.529 | 136 | 36 | 0 | 6 | 141 | 143 | 278 | 5.71e-68 | 206 |
| Msa1309400 | MtrunA17_Chr8g0336391 | 61.871 | 139 | 51 | 1 | 3 | 141 | 145 | 281 | 4.26e-55 | 174 |
| Msa1309400 | MtrunA17_Chr8g0336381 | 51.938 | 129 | 61 | 1 | 14 | 141 | 134 | 262 | 2.19e-38 | 130 |
| Msa1309400 | MtrunA17_Chr5g0402871 | 46.099 | 141 | 72 | 3 | 2 | 141 | 122 | 259 | 5.49e-33 | 116 |
| Msa1309400 | MtrunA17_Chr5g0402851 | 45.070 | 142 | 74 | 3 | 1 | 141 | 124 | 262 | 1.73e-32 | 115 |
| Msa1309400 | MtrunA17_Chr5g0402841 | 46.923 | 130 | 66 | 3 | 13 | 141 | 134 | 261 | 1.30e-31 | 113 |
| Msa1309400 | MtrunA17_Chr8g0374141 | 37.069 | 116 | 70 | 2 | 26 | 141 | 190 | 302 | 7.71e-18 | 77.8 |
| Msa1309400 | MtrunA17_Chr5g0402901 | 38.261 | 115 | 66 | 3 | 28 | 141 | 151 | 261 | 7.71e-16 | 72.0 |
| Msa1309400 | MtrunA17_Chr5g0402881 | 36.000 | 125 | 72 | 4 | 18 | 141 | 161 | 278 | 1.57e-14 | 68.6 |
| Msa1309400 | MtrunA17_Chr5g0428471 | 33.333 | 132 | 81 | 3 | 11 | 141 | 155 | 280 | 7.84e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309400 | AT2G23570.1 | 43.200 | 125 | 66 | 3 | 18 | 141 | 58 | 178 | 2.00e-24 | 92.8 |
| Msa1309400 | AT2G23580.1 | 42.982 | 114 | 60 | 3 | 29 | 141 | 153 | 262 | 1.31e-21 | 87.4 |
| Msa1309400 | AT2G23610.1 | 36.691 | 139 | 85 | 2 | 3 | 141 | 127 | 262 | 4.02e-21 | 86.3 |
| Msa1309400 | AT3G50440.1 | 35.200 | 125 | 78 | 2 | 17 | 141 | 153 | 274 | 3.70e-20 | 84.0 |
| Msa1309400 | AT2G23620.1 | 37.705 | 122 | 73 | 2 | 20 | 141 | 144 | 262 | 6.25e-19 | 80.5 |
| Msa1309400 | AT2G23550.2 | 35.200 | 125 | 76 | 3 | 18 | 141 | 113 | 233 | 1.72e-17 | 76.3 |
| Msa1309400 | AT2G23550.1 | 35.200 | 125 | 76 | 3 | 18 | 141 | 142 | 262 | 2.69e-17 | 76.3 |
| Msa1309400 | AT2G23550.4 | 35.200 | 125 | 76 | 3 | 18 | 141 | 149 | 269 | 3.05e-17 | 76.3 |
| Msa1309400 | AT4G37150.1 | 43.269 | 104 | 56 | 2 | 38 | 141 | 155 | 255 | 4.05e-17 | 75.5 |
| Msa1309400 | AT2G23600.1 | 35.246 | 122 | 76 | 2 | 20 | 141 | 144 | 262 | 6.51e-17 | 75.1 |
| Msa1309400 | AT2G23600.2 | 35.246 | 122 | 76 | 2 | 20 | 141 | 159 | 277 | 8.53e-17 | 75.1 |
| Msa1309400 | AT2G23560.1 | 35.484 | 124 | 77 | 2 | 18 | 141 | 139 | 259 | 4.02e-16 | 72.8 |
| Msa1309400 | AT2G23590.1 | 31.579 | 114 | 75 | 2 | 28 | 141 | 161 | 271 | 3.76e-12 | 62.4 |
| Msa1309400 | AT2G23610.2 | 37.755 | 98 | 56 | 3 | 45 | 141 | 124 | 217 | 1.30e-11 | 60.1 |
| Msa1309400 | AT4G16690.1 | 31.159 | 138 | 81 | 6 | 5 | 137 | 128 | 256 | 5.68e-11 | 58.9 |
Find 34 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCAACTGCCTTGTTGTT+TGG | 0.223716 | 8_4:-5874456 | Msa1309400:CDS |
| CCACAGTTATTCTTCTTTGA+TGG | 0.234931 | 8_4:-5874489 | Msa1309400:CDS |
| TTAGAGAGGATCTGCAATTA+TGG | 0.262915 | 8_4:-5873771 | Msa1309400:CDS |
| ATCACTTTCACTTCAACATA+TGG | 0.320896 | 8_4:+5873730 | None:intergenic |
| TTGGAAATAATGAAGACTTT+TGG | 0.329148 | 8_4:+5873808 | None:intergenic |
| TCTAATGAAAATGTCTCCTT+TGG | 0.376102 | 8_4:+5873789 | None:intergenic |
| TACCCTTCCATTCCTCTGCT+TGG | 0.389684 | 8_4:+5873831 | None:intergenic |
| AAGGCAGTTGGAGGACTGTT+TGG | 0.392141 | 8_4:+5874465 | None:intergenic |
| TGTTGAAGTGAAAGTGATAA+AGG | 0.400092 | 8_4:-5873725 | Msa1309400:CDS |
| AAGATTAAATTCCAGTCAAC+AGG | 0.402609 | 8_4:-5874517 | Msa1309400:CDS |
| TTTGACACTTGGGTCATCAT+TGG | 0.414427 | 8_4:-5873911 | Msa1309400:CDS |
| GTTGTTTGGATCTAAACTCT+TGG | 0.419417 | 8_4:-5874442 | Msa1309400:CDS |
| CATGCGCAGGATTTGACACT+TGG | 0.438141 | 8_4:-5873922 | Msa1309400:intron |
| AGCAGTCTTTAGAATGTAAG+AGG | 0.485742 | 8_4:+5873660 | None:intergenic |
| GTATCAATTATCGCCTAATG+AGG | 0.511231 | 8_4:-5874409 | Msa1309400:intron |
| AATTGGTGTTGAAAGAAGCA+AGG | 0.519211 | 8_4:-5873858 | Msa1309400:CDS |
| AAAGTCTTCATTATTTCCAA+AGG | 0.521901 | 8_4:-5873805 | Msa1309400:CDS |
| TCGTCATTAAAGATAGGATG+TGG | 0.526108 | 8_4:+5873883 | None:intergenic |
| TTATGGATAATTGAGAGAAC+GGG | 0.528041 | 8_4:-5873754 | Msa1309400:CDS |
| AGGGTTACCAAGCAGAGGAA+TGG | 0.528556 | 8_4:-5873838 | Msa1309400:CDS |
| GATCCAAACAACAAGGCAGT+TGG | 0.532373 | 8_4:+5874453 | None:intergenic |
| ATTATGGATAATTGAGAGAA+CGG | 0.544632 | 8_4:-5873755 | Msa1309400:CDS |
| CTGTGGTGGATCCTGTTGAC+TGG | 0.559384 | 8_4:+5874506 | None:intergenic |
| ATTGGTGTTGAAAGAAGCAA+GGG | 0.568194 | 8_4:-5873857 | Msa1309400:CDS |
| CCAAACAACAAGGCAGTTGG+AGG | 0.578597 | 8_4:+5874456 | None:intergenic |
| TTACCAAGCAGAGGAATGGA+AGG | 0.593361 | 8_4:-5873834 | Msa1309400:CDS |
| TCAAAGAAGAATAACTGTGG+TGG | 0.601293 | 8_4:+5874492 | None:intergenic |
| CACTTGGGTCATCATTGGTG+AGG | 0.603881 | 8_4:-5873906 | Msa1309400:CDS |
| AAGCAAGGGTTACCAAGCAG+AGG | 0.608021 | 8_4:-5873843 | Msa1309400:CDS |
| ATGCGCAGGATTTGACACTT+GGG | 0.634134 | 8_4:-5873921 | Msa1309400:intron |
| GATAAAGGATTCAGATCACA+TGG | 0.658047 | 8_4:-5873710 | Msa1309400:CDS |
| TACCAAGCAGAGGAATGGAA+GGG | 0.694878 | 8_4:-5873833 | Msa1309400:CDS |
| GAGTTTAGATCCAAACAACA+AGG | 0.704963 | 8_4:+5874446 | None:intergenic |
| CCATCAAAGAAGAATAACTG+TGG | 0.722018 | 8_4:+5874489 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTGAAAATTTGAAATAA+AGG | - | chr8_4:5873802-5873821 | Msa1309400:CDS | 10.0% |
| !!! | TAATTGAAAATTTGAAATAA+AGG | - | chr8_4:5873802-5873821 | Msa1309400:CDS | 10.0% |
| !! | CTGTTAAAAATAATTTATCT+AGG | - | chr8_4:5874001-5874020 | Msa1309400:intron | 15.0% |
| !! | TAATATAATATGGTATGTTA+AGG | + | chr8_4:5874182-5874201 | None:intergenic | 15.0% |
| !! | CTGTTAAAAATAATTTATCT+AGG | - | chr8_4:5874001-5874020 | Msa1309400:intron | 15.0% |
| !! | TAATATAATATGGTATGTTA+AGG | + | chr8_4:5874182-5874201 | None:intergenic | 15.0% |
| !! | AACAAAAAAATTACCTCATT+AGG | + | chr8_4:5873780-5873799 | None:intergenic | 20.0% |
| !!! | AATTTTTCGTCATTAAAGAT+AGG | + | chr8_4:5874299-5874318 | None:intergenic | 20.0% |
| !! | TATCTTTAATGACGAAAAAT+TGG | - | chr8_4:5874298-5874317 | Msa1309400:intron | 20.0% |
| !! | AACAAAAAAATTACCTCATT+AGG | + | chr8_4:5873780-5873799 | None:intergenic | 20.0% |
| !!! | AATTTTTCGTCATTAAAGAT+AGG | + | chr8_4:5874299-5874318 | None:intergenic | 20.0% |
| !! | TATCTTTAATGACGAAAAAT+TGG | - | chr8_4:5874298-5874317 | Msa1309400:intron | 20.0% |
| ! | CGATTAAACTTCAAATCATT+AGG | - | chr8_4:5874082-5874101 | Msa1309400:intron | 25.0% |
| ! | TTAAACTTCAAATCATTAGG+AGG | - | chr8_4:5874085-5874104 | Msa1309400:intron | 25.0% |
| !! | TTGGAAATAATGAAGACTTT+TGG | + | chr8_4:5874368-5874387 | None:intergenic | 25.0% |
| ! | AAAGTCTTCATTATTTCCAA+AGG | - | chr8_4:5874368-5874387 | Msa1309400:intron | 25.0% |
| ! | ATTATGGATAATTGAGAGAA+CGG | - | chr8_4:5874418-5874437 | Msa1309400:CDS | 25.0% |
| ! | CGATTAAACTTCAAATCATT+AGG | - | chr8_4:5874082-5874101 | Msa1309400:intron | 25.0% |
| ! | TTAAACTTCAAATCATTAGG+AGG | - | chr8_4:5874085-5874104 | Msa1309400:intron | 25.0% |
| !! | TTGGAAATAATGAAGACTTT+TGG | + | chr8_4:5874368-5874387 | None:intergenic | 25.0% |
| ! | AAAGTCTTCATTATTTCCAA+AGG | - | chr8_4:5874368-5874387 | Msa1309400:intron | 25.0% |
| ! | ATTATGGATAATTGAGAGAA+CGG | - | chr8_4:5874418-5874437 | Msa1309400:CDS | 25.0% |
| AAGATTAAATTCCAGTCAAC+AGG | - | chr8_4:5873656-5873675 | Msa1309400:CDS | 30.0% | |
| TCTAATGAAAATGTCTCCTT+TGG | + | chr8_4:5874387-5874406 | None:intergenic | 30.0% | |
| TTATGGATAATTGAGAGAAC+GGG | - | chr8_4:5874419-5874438 | Msa1309400:CDS | 30.0% | |
| ATCACTTTCACTTCAACATA+TGG | + | chr8_4:5874446-5874465 | None:intergenic | 30.0% | |
| TGTTGAAGTGAAAGTGATAA+AGG | - | chr8_4:5874448-5874467 | Msa1309400:CDS | 30.0% | |
| ! | ATGTAAGAGGTAAGCTTTTT+AGG | + | chr8_4:5874503-5874522 | None:intergenic | 30.0% |
| AAGATTAAATTCCAGTCAAC+AGG | - | chr8_4:5873656-5873675 | Msa1309400:CDS | 30.0% | |
| TCTAATGAAAATGTCTCCTT+TGG | + | chr8_4:5874387-5874406 | None:intergenic | 30.0% | |
| TTATGGATAATTGAGAGAAC+GGG | - | chr8_4:5874419-5874438 | Msa1309400:CDS | 30.0% | |
| ATCACTTTCACTTCAACATA+TGG | + | chr8_4:5874446-5874465 | None:intergenic | 30.0% | |
| TGTTGAAGTGAAAGTGATAA+AGG | - | chr8_4:5874448-5874467 | Msa1309400:CDS | 30.0% | |
| ! | ATGTAAGAGGTAAGCTTTTT+AGG | + | chr8_4:5874503-5874522 | None:intergenic | 30.0% |
| TCAAAGAAGAATAACTGTGG+TGG | + | chr8_4:5873684-5873703 | None:intergenic | 35.0% | |
| CCATCAAAGAAGAATAACTG+TGG | + | chr8_4:5873687-5873706 | None:intergenic | 35.0% | |
| CCACAGTTATTCTTCTTTGA+TGG | - | chr8_4:5873684-5873703 | Msa1309400:CDS | 35.0% | |
| GAGTTTAGATCCAAACAACA+AGG | + | chr8_4:5873730-5873749 | None:intergenic | 35.0% | |
| GTTGTTTGGATCTAAACTCT+TGG | - | chr8_4:5873731-5873750 | Msa1309400:CDS | 35.0% | |
| GTATCAATTATCGCCTAATG+AGG | - | chr8_4:5873764-5873783 | Msa1309400:CDS | 35.0% | |
| ACATTGAAGCCAATCATTGA+TGG | - | chr8_4:5874225-5874244 | Msa1309400:intron | 35.0% | |
| TCGTCATTAAAGATAGGATG+TGG | + | chr8_4:5874293-5874312 | None:intergenic | 35.0% | |
| !! | AATTGGTGTTGAAAGAAGCA+AGG | - | chr8_4:5874315-5874334 | Msa1309400:intron | 35.0% |
| !! | ATTGGTGTTGAAAGAAGCAA+GGG | - | chr8_4:5874316-5874335 | Msa1309400:intron | 35.0% |
| ! | AGGAGACATTTTCATTAGAG+AGG | - | chr8_4:5874388-5874407 | Msa1309400:intron | 35.0% |
| TTAGAGAGGATCTGCAATTA+TGG | - | chr8_4:5874402-5874421 | Msa1309400:intron | 35.0% | |
| GATAAAGGATTCAGATCACA+TGG | - | chr8_4:5874463-5874482 | Msa1309400:CDS | 35.0% | |
| !!! | AGAGGTAAGCTTTTTAGGTT+TGG | + | chr8_4:5874498-5874517 | None:intergenic | 35.0% |
| !! | AGCAGTCTTTAGAATGTAAG+AGG | + | chr8_4:5874516-5874535 | None:intergenic | 35.0% |
| TCAAAGAAGAATAACTGTGG+TGG | + | chr8_4:5873684-5873703 | None:intergenic | 35.0% | |
| CCATCAAAGAAGAATAACTG+TGG | + | chr8_4:5873687-5873706 | None:intergenic | 35.0% | |
| CCACAGTTATTCTTCTTTGA+TGG | - | chr8_4:5873684-5873703 | Msa1309400:CDS | 35.0% | |
| GAGTTTAGATCCAAACAACA+AGG | + | chr8_4:5873730-5873749 | None:intergenic | 35.0% | |
| GTTGTTTGGATCTAAACTCT+TGG | - | chr8_4:5873731-5873750 | Msa1309400:CDS | 35.0% | |
| GTATCAATTATCGCCTAATG+AGG | - | chr8_4:5873764-5873783 | Msa1309400:CDS | 35.0% | |
| ACATTGAAGCCAATCATTGA+TGG | - | chr8_4:5874225-5874244 | Msa1309400:intron | 35.0% | |
| TCGTCATTAAAGATAGGATG+TGG | + | chr8_4:5874293-5874312 | None:intergenic | 35.0% | |
| !! | AATTGGTGTTGAAAGAAGCA+AGG | - | chr8_4:5874315-5874334 | Msa1309400:intron | 35.0% |
| !! | ATTGGTGTTGAAAGAAGCAA+GGG | - | chr8_4:5874316-5874335 | Msa1309400:intron | 35.0% |
| ! | AGGAGACATTTTCATTAGAG+AGG | - | chr8_4:5874388-5874407 | Msa1309400:intron | 35.0% |
| TTAGAGAGGATCTGCAATTA+TGG | - | chr8_4:5874402-5874421 | Msa1309400:intron | 35.0% | |
| GATAAAGGATTCAGATCACA+TGG | - | chr8_4:5874463-5874482 | Msa1309400:CDS | 35.0% | |
| !!! | AGAGGTAAGCTTTTTAGGTT+TGG | + | chr8_4:5874498-5874517 | None:intergenic | 35.0% |
| !! | AGCAGTCTTTAGAATGTAAG+AGG | + | chr8_4:5874516-5874535 | None:intergenic | 35.0% |
| CGCATGTAACCATCAATGAT+TGG | + | chr8_4:5874237-5874256 | None:intergenic | 40.0% | |
| TTTGACACTTGGGTCATCAT+TGG | - | chr8_4:5874262-5874281 | Msa1309400:intron | 40.0% | |
| CGCATGTAACCATCAATGAT+TGG | + | chr8_4:5874237-5874256 | None:intergenic | 40.0% | |
| TTTGACACTTGGGTCATCAT+TGG | - | chr8_4:5874262-5874281 | Msa1309400:intron | 40.0% | |
| GATCCAAACAACAAGGCAGT+TGG | + | chr8_4:5873723-5873742 | None:intergenic | 45.0% | |
| ! | TCATTGATGGTTACATGCGC+AGG | - | chr8_4:5874238-5874257 | Msa1309400:intron | 45.0% |
| ATGCGCAGGATTTGACACTT+GGG | - | chr8_4:5874252-5874271 | Msa1309400:intron | 45.0% | |
| TTACCAAGCAGAGGAATGGA+AGG | - | chr8_4:5874339-5874358 | Msa1309400:intron | 45.0% | |
| TACCAAGCAGAGGAATGGAA+GGG | - | chr8_4:5874340-5874359 | Msa1309400:intron | 45.0% | |
| GATCCAAACAACAAGGCAGT+TGG | + | chr8_4:5873723-5873742 | None:intergenic | 45.0% | |
| ! | TCATTGATGGTTACATGCGC+AGG | - | chr8_4:5874238-5874257 | Msa1309400:intron | 45.0% |
| ATGCGCAGGATTTGACACTT+GGG | - | chr8_4:5874252-5874271 | Msa1309400:intron | 45.0% | |
| TTACCAAGCAGAGGAATGGA+AGG | - | chr8_4:5874339-5874358 | Msa1309400:intron | 45.0% | |
| TACCAAGCAGAGGAATGGAA+GGG | - | chr8_4:5874340-5874359 | Msa1309400:intron | 45.0% | |
| !! | ATGTATAATATAATATAATA+TGG | + | chr8_4:5874192-5874211 | None:intergenic | 5.0% |
| !! | ATGTATAATATAATATAATA+TGG | + | chr8_4:5874192-5874211 | None:intergenic | 5.0% |
| AAGGCAGTTGGAGGACTGTT+TGG | + | chr8_4:5873711-5873730 | None:intergenic | 50.0% | |
| CCAAACAACAAGGCAGTTGG+AGG | + | chr8_4:5873720-5873739 | None:intergenic | 50.0% | |
| !! | CCTCCAACTGCCTTGTTGTT+TGG | - | chr8_4:5873717-5873736 | Msa1309400:CDS | 50.0% |
| CATGCGCAGGATTTGACACT+TGG | - | chr8_4:5874251-5874270 | Msa1309400:intron | 50.0% | |
| CACTTGGGTCATCATTGGTG+AGG | - | chr8_4:5874267-5874286 | Msa1309400:intron | 50.0% | |
| AAGCAAGGGTTACCAAGCAG+AGG | - | chr8_4:5874330-5874349 | Msa1309400:intron | 50.0% | |
| AGGGTTACCAAGCAGAGGAA+TGG | - | chr8_4:5874335-5874354 | Msa1309400:intron | 50.0% | |
| TACCCTTCCATTCCTCTGCT+TGG | + | chr8_4:5874345-5874364 | None:intergenic | 50.0% | |
| AAGGCAGTTGGAGGACTGTT+TGG | + | chr8_4:5873711-5873730 | None:intergenic | 50.0% | |
| CCAAACAACAAGGCAGTTGG+AGG | + | chr8_4:5873720-5873739 | None:intergenic | 50.0% | |
| !! | CCTCCAACTGCCTTGTTGTT+TGG | - | chr8_4:5873717-5873736 | Msa1309400:CDS | 50.0% |
| CATGCGCAGGATTTGACACT+TGG | - | chr8_4:5874251-5874270 | Msa1309400:intron | 50.0% | |
| CACTTGGGTCATCATTGGTG+AGG | - | chr8_4:5874267-5874286 | Msa1309400:intron | 50.0% | |
| AAGCAAGGGTTACCAAGCAG+AGG | - | chr8_4:5874330-5874349 | Msa1309400:intron | 50.0% | |
| AGGGTTACCAAGCAGAGGAA+TGG | - | chr8_4:5874335-5874354 | Msa1309400:intron | 50.0% | |
| TACCCTTCCATTCCTCTGCT+TGG | + | chr8_4:5874345-5874364 | None:intergenic | 50.0% | |
| !! | CTGTGGTGGATCCTGTTGAC+TGG | + | chr8_4:5873670-5873689 | None:intergenic | 55.0% |
| !! | CTGTGGTGGATCCTGTTGAC+TGG | + | chr8_4:5873670-5873689 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 5873648 | 5874547 | 5873648 | ID=Msa1309400;Name=Msa1309400 |
| chr8_4 | mRNA | 5873648 | 5874547 | 5873648 | ID=Msa1309400-mRNA-1;Parent=Msa1309400;Name=Msa1309400-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|141 |
| chr8_4 | exon | 5874410 | 5874547 | 5874410 | ID=Msa1309400-mRNA-1:exon:1969;Parent=Msa1309400-mRNA-1 |
| chr8_4 | exon | 5873648 | 5873935 | 5873648 | ID=Msa1309400-mRNA-1:exon:1968;Parent=Msa1309400-mRNA-1 |
| chr8_4 | CDS | 5874410 | 5874547 | 5874410 | ID=Msa1309400-mRNA-1:cds;Parent=Msa1309400-mRNA-1 |
| chr8_4 | CDS | 5873648 | 5873935 | 5873648 | ID=Msa1309400-mRNA-1:cds;Parent=Msa1309400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
