Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312210 | XP_003626998.1 | 98.515 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 5.89e-143 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312210 | sp|A7P756|CSPLD_VITVI | 71.351 | 185 | 53 | 0 | 18 | 202 | 26 | 210 | 2.61e-93 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312210 | G7LFX8 | 98.515 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 2.81e-143 | 406 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612880 | Msa1312210 | -0.804787 | 1.826345e-49 | -8.615850e-47 |
| Msa0726520 | Msa1312210 | 0.800263 | 1.564570e-48 | -8.615850e-47 |
| Msa0758000 | Msa1312210 | 0.800508 | 1.394958e-48 | -8.615850e-47 |
| Msa0836060 | Msa1312210 | -0.800811 | 1.209540e-48 | -8.615850e-47 |
| Msa1231440 | Msa1312210 | 0.812997 | 3.198956e-51 | -8.615850e-47 |
| Msa1255710 | Msa1312210 | 0.803094 | 4.107002e-49 | -8.615850e-47 |
| Msa1265570 | Msa1312210 | 0.820225 | 7.676851e-53 | -8.615850e-47 |
| Msa1278000 | Msa1312210 | 0.825749 | 3.956644e-54 | -8.615850e-47 |
| Msa1312210 | Msa1334670 | 0.820202 | 7.770700e-53 | -8.615850e-47 |
| Msa1312210 | Msa1362590 | 0.805068 | 1.595668e-49 | -8.615850e-47 |
| Msa1312210 | Msa1365230 | 0.820052 | 8.409218e-53 | -8.615850e-47 |
| Msa1312210 | Msa1427600 | -0.805693 | 1.180004e-49 | -8.615850e-47 |
| Msa0469060 | Msa1312210 | 0.801067 | 1.072551e-48 | -8.615850e-47 |
| Msa1003110 | Msa1312210 | 0.812210 | 4.754741e-51 | -8.615850e-47 |
| Msa0260980 | Msa1312210 | 0.804181 | 2.443075e-49 | -8.615850e-47 |
| Msa0336430 | Msa1312210 | 0.834458 | 2.963176e-56 | -8.615850e-47 |
| Msa0336520 | Msa1312210 | 0.826673 | 2.384793e-54 | -8.615850e-47 |
| Msa1133860 | Msa1312210 | 0.805857 | 1.090023e-49 | -8.615850e-47 |
| Msa1220720 | Msa1312210 | 0.827940 | 1.184928e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312210 | MtrunA17_Chr8g0340351 | 98.515 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 5.41e-147 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312210 | AT3G16300.1 | 48.045 | 179 | 93 | 0 | 24 | 202 | 33 | 211 | 6.70e-54 | 171 |
| Msa1312210 | AT1G79780.1 | 48.315 | 178 | 89 | 1 | 26 | 200 | 8 | 185 | 1.98e-53 | 169 |
Find 62 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCACGTCAAGATTTCTT+AGG | 0.200483 | 8_4:-9172451 | Msa1312210:CDS |
| CTTTGGGCAGATTTCTTGTT+GGG | 0.284993 | 8_4:-9172517 | Msa1312210:intron |
| TGCAAAGGCTTGCAAAAGTT+TGG | 0.322362 | 8_4:+9171466 | None:intergenic |
| CTGCTGTGCATGATGTTATA+TGG | 0.353776 | 8_4:-9171375 | Msa1312210:CDS |
| CTCCGTTCTCCGGCGTCGAC+TGG | 0.358436 | 8_4:+9175515 | None:intergenic |
| CTACCTTGTAGTCAATGTTC+TGG | 0.359261 | 8_4:-9171280 | Msa1312210:three_prime_UTR |
| AGGGTATGAAAGGGTGAGTT+AGG | 0.365015 | 8_4:+9175693 | None:intergenic |
| AGCAGCTCTGTCTCTATCTA+TGG | 0.367277 | 8_4:-9175414 | Msa1312210:CDS |
| TCTTTGGGCAGATTTCTTGT+TGG | 0.399710 | 8_4:-9172518 | Msa1312210:intron |
| AATTCCAGTGCGATTTAGAT+TGG | 0.408297 | 8_4:+9171504 | None:intergenic |
| GCTCACTCACCATGATCTCT+TGG | 0.410371 | 8_4:+9175610 | None:intergenic |
| CTTCTCGCCGTCTCCAACGA+GGG | 0.419748 | 8_4:+9175539 | None:intergenic |
| AGTGCTGGATCAGCTGCATC+TGG | 0.422638 | 8_4:-9171532 | Msa1312210:CDS |
| ACCCATGCATGCTTTCTAGA+AGG | 0.423825 | 8_4:+9172413 | None:intergenic |
| AAAACAGCTGATGAAATTGA+AGG | 0.435057 | 8_4:+9171411 | None:intergenic |
| AACGAGGGGACCACTCATTC+TGG | 0.444423 | 8_4:+9175554 | None:intergenic |
| GCTTATGCATTAATGAGTGC+TGG | 0.454877 | 8_4:-9171547 | Msa1312210:CDS |
| AAAGTCCACTTAGAATGAAC+AGG | 0.463744 | 8_4:+9175381 | None:intergenic |
| TGGCACGTCAAGATTTCTTA+GGG | 0.465265 | 8_4:-9172450 | Msa1312210:CDS |
| ACTTACCTGTTCATTCTAAG+TGG | 0.469506 | 8_4:-9175386 | Msa1312210:CDS |
| TGACTACAAGGTAGTAATCA+AGG | 0.476186 | 8_4:+9171289 | None:intergenic |
| GCAGCATCACCTCCGTTCTC+CGG | 0.490610 | 8_4:+9175505 | None:intergenic |
| TCATTGCTGCAACTACTCAT+TGG | 0.498018 | 8_4:-9172470 | Msa1312210:CDS |
| AAGGTAGTAATCAAGGGATA+AGG | 0.498736 | 8_4:+9171296 | None:intergenic |
| AAGGGATAAGGATCATTGTA+TGG | 0.501634 | 8_4:+9171308 | None:intergenic |
| GTGATGCTGCTGATTCTTCG+AGG | 0.503390 | 8_4:-9175492 | Msa1312210:CDS |
| TGTTATATGAAGGGTATGAA+AGG | 0.516258 | 8_4:+9175683 | None:intergenic |
| CAGCAATGAGTGGGCTGCAA+CGG | 0.516377 | 8_4:+9172484 | None:intergenic |
| CACTCACCATGATCTCTTGG+AGG | 0.519731 | 8_4:+9175613 | None:intergenic |
| TTTGGGCAGATTTCTTGTTG+GGG | 0.519922 | 8_4:-9172516 | Msa1312210:intron |
| GGCTTGCAAAAGTTTGGAAG+AGG | 0.523315 | 8_4:+9171472 | None:intergenic |
| GACCAGTCGACGCCGGAGAA+CGG | 0.530141 | 8_4:-9175517 | Msa1312210:CDS |
| AAATAAAATTACTCGTATGA+AGG | 0.531811 | 8_4:+9175354 | None:intergenic |
| TTCCTTCTAGAAAGCATGCA+TGG | 0.533369 | 8_4:-9172415 | Msa1312210:CDS |
| GTTATATGAAGGGTATGAAA+GGG | 0.538757 | 8_4:+9175684 | None:intergenic |
| AGAATGAGTGGTCCCCTCGT+TGG | 0.542561 | 8_4:-9175552 | Msa1312210:CDS |
| ATAGCTCCTCCAAGAGATCA+TGG | 0.549376 | 8_4:-9175619 | Msa1312210:exon |
| GTAACCAATCTAAATCGCAC+TGG | 0.549479 | 8_4:-9171508 | Msa1312210:CDS |
| ATTCTTCGAGGTTTATGCAT+GGG | 0.555159 | 8_4:-9175480 | Msa1312210:CDS |
| AGTGGTCCCCTCGTTGGAGA+CGG | 0.564057 | 8_4:-9175546 | Msa1312210:CDS |
| AAGCCAGAACATTGACTACA+AGG | 0.572324 | 8_4:+9171277 | None:intergenic |
| TGGTCACAAAATTTGTGCAA+AGG | 0.572337 | 8_4:+9171451 | None:intergenic |
| GTATGAAAGGGTGAGTTAGG+AGG | 0.577122 | 8_4:+9175696 | None:intergenic |
| TCCTTCTAGAAAGCATGCAT+GGG | 0.580579 | 8_4:-9172414 | Msa1312210:CDS |
| ATGTGTGAAGTGTTATATGA+AGG | 0.583590 | 8_4:+9175673 | None:intergenic |
| AAGGGTGAGTTAGGAGGTGA+CGG | 0.585072 | 8_4:+9175702 | None:intergenic |
| TGAGTAGTTGCAGCAATGAG+TGG | 0.588948 | 8_4:+9172474 | None:intergenic |
| GACTACAAGGTAGTAATCAA+GGG | 0.599512 | 8_4:+9171290 | None:intergenic |
| AACATCATGCACAGCAGATG+TGG | 0.599570 | 8_4:+9171381 | None:intergenic |
| GATTCTTCGAGGTTTATGCA+TGG | 0.612397 | 8_4:-9175481 | Msa1312210:CDS |
| GCGAGAAGACCAGTCGACGC+CGG | 0.613120 | 8_4:-9175524 | Msa1312210:CDS |
| GAAATTGAAGGCTATTGAGA+TGG | 0.617309 | 8_4:+9171423 | None:intergenic |
| TTTCATACACACACATCAGA+AGG | 0.621639 | 8_4:-9175643 | Msa1312210:five_prime_UTR |
| GGTGAGTTAGGAGGTGACGG+TGG | 0.626305 | 8_4:+9175705 | None:intergenic |
| TGTGTGAAGTGTTATATGAA+GGG | 0.630225 | 8_4:+9175674 | None:intergenic |
| TCTTCTCGCCGTCTCCAACG+AGG | 0.630530 | 8_4:+9175538 | None:intergenic |
| ACAGCATCTTTAGAGTGCAG+TGG | 0.638742 | 8_4:-9175582 | Msa1312210:CDS |
| ATGCTTTCTAGAAGGAATCA+CGG | 0.645419 | 8_4:+9172421 | None:intergenic |
| CAGTCGACGCCGGAGAACGG+AGG | 0.650567 | 8_4:-9175514 | Msa1312210:CDS |
| AGTGGATCAACCAGAATGAG+TGG | 0.652261 | 8_4:-9175564 | Msa1312210:CDS |
| AGGCTATTGAGATGGCAACA+TGG | 0.653048 | 8_4:+9171431 | None:intergenic |
| GAGTAGTTGCAGCAATGAGT+GGG | 0.669558 | 8_4:+9172475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTAATTTTTTTTA+GGG | + | chr8_4:9172815-9172834 | None:intergenic | 0.0% |
| !!! | TAAAAAAATTAATTTTTTTT+AGG | + | chr8_4:9172816-9172835 | None:intergenic | 0.0% |
| !!! | TTTTCTTATGTATTTATATT+TGG | - | chr8_4:9171608-9171627 | Msa1312210:intron | 10.0% |
| !! | TTTAAAAAAAGTTAAATTGA+AGG | - | chr8_4:9172041-9172060 | Msa1312210:intron | 10.0% |
| !! | TTAAAAAAAGTTAAATTGAA+GGG | - | chr8_4:9172042-9172061 | Msa1312210:intron | 10.0% |
| !!! | GATAATTTTTTTTTCAATTA+GGG | - | chr8_4:9172088-9172107 | Msa1312210:intron | 10.0% |
| !!! | ATAATTTTTTTTTCAATTAG+GGG | - | chr8_4:9172089-9172108 | Msa1312210:intron | 10.0% |
| !!! | GTTTTGATATATTTTTTTTT+TGG | - | chr8_4:9172158-9172177 | Msa1312210:intron | 10.0% |
| !! | ATAAACTATTAATATATCAA+TGG | + | chr8_4:9172422-9172441 | None:intergenic | 10.0% |
| !!! | AAAAGTTAGTATATTTTTAA+AGG | + | chr8_4:9172649-9172668 | None:intergenic | 10.0% |
| !!! | TAAAAACTATTTTATTGAAA+AGG | + | chr8_4:9173244-9173263 | None:intergenic | 10.0% |
| !!! | TTATTACTTTAAAAAGATTA+TGG | - | chr8_4:9173329-9173348 | Msa1312210:intron | 10.0% |
| !!! | TTTGTTTTATATTAAAATGT+AGG | - | chr8_4:9174338-9174357 | Msa1312210:intron | 10.0% |
| !! | ATAATAATCAAAATTAATCT+AGG | - | chr8_4:9174584-9174603 | Msa1312210:intron | 10.0% |
| !!! | ACATATGATTTTTTTTATTA+GGG | + | chr8_4:9174709-9174728 | None:intergenic | 10.0% |
| !!! | AACATATGATTTTTTTTATT+AGG | + | chr8_4:9174710-9174729 | None:intergenic | 10.0% |
| !! | ATAAAAATATAAACCTTATT+TGG | - | chr8_4:9174867-9174886 | Msa1312210:intron | 10.0% |
| !!! | TGAAGTTATTTTTATTGATA+TGG | + | chr8_4:9171981-9172000 | None:intergenic | 15.0% |
| !!! | GGATAATTTTTTTTTCAATT+AGG | - | chr8_4:9172087-9172106 | Msa1312210:intron | 15.0% |
| !!! | TAATTTTTTTTTCAATTAGG+GGG | - | chr8_4:9172090-9172109 | Msa1312210:intron | 15.0% |
| !! | ATATTAATAGTTTATTCCAA+TGG | - | chr8_4:9172427-9172446 | Msa1312210:CDS | 15.0% |
| !!! | AAGAATTTTTATATTTTTGG+CGG | + | chr8_4:9172869-9172888 | None:intergenic | 15.0% |
| !!! | AAGTTTTTCATATTCATTTT+TGG | + | chr8_4:9173016-9173035 | None:intergenic | 15.0% |
| !! | AAATTAAACATGTAAAAAGA+GGG | + | chr8_4:9173212-9173231 | None:intergenic | 15.0% |
| !! | AAAATTAAACATGTAAAAAG+AGG | + | chr8_4:9173213-9173232 | None:intergenic | 15.0% |
| !!! | ATACGGTTTTAAAATTTAAA+TGG | - | chr8_4:9173791-9173810 | Msa1312210:intron | 15.0% |
| !!! | TAAAAAAAAGTCTTATACAT+AGG | + | chr8_4:9174083-9174102 | None:intergenic | 15.0% |
| !!! | TAAAATCTTTTTTTTACTCA+AGG | + | chr8_4:9174106-9174125 | None:intergenic | 15.0% |
| !!! | TAAGGTTTATATTTTTATGT+AGG | + | chr8_4:9174865-9174884 | None:intergenic | 15.0% |
| !! | TTAAATTGTTTATCCAAATA+AGG | + | chr8_4:9174883-9174902 | None:intergenic | 15.0% |
| !! | TAAAATAAACAATCAATTGA+TGG | + | chr8_4:9175194-9175213 | None:intergenic | 15.0% |
| !! | TAACAATTTATAAATACCAT+GGG | + | chr8_4:9175236-9175255 | None:intergenic | 15.0% |
| !! | ATAACAATTTATAAATACCA+TGG | + | chr8_4:9175237-9175256 | None:intergenic | 15.0% |
| !! | AAATAAAATTACTCGTATGA+AGG | + | chr8_4:9171541-9171560 | None:intergenic | 20.0% |
| !!! | ATTTGGTTTTGTTTTTGTTT+TGG | - | chr8_4:9171625-9171644 | Msa1312210:intron | 20.0% |
| !!! | AGAAAATATTCATTGATAAC+AGG | - | chr8_4:9171775-9171794 | Msa1312210:intron | 20.0% |
| !! | AATGTTTGTGTTAACAATAA+AGG | + | chr8_4:9171921-9171940 | None:intergenic | 20.0% |
| !!! | GAAAAATCAGTTTTTAAATG+AGG | - | chr8_4:9172066-9172085 | Msa1312210:intron | 20.0% |
| !! | AAAAAGAATTGCGTATAATT+TGG | - | chr8_4:9172353-9172372 | Msa1312210:intron | 20.0% |
| !! | ATTTAACCCAAAATAGAAAA+CGG | + | chr8_4:9172617-9172636 | None:intergenic | 20.0% |
| !! | AAAGATATAGAATCAAAGAA+AGG | + | chr8_4:9173510-9173529 | None:intergenic | 20.0% |
| !! | GAAAAATAGTTGAAAAAGAA+AGG | + | chr8_4:9173534-9173553 | None:intergenic | 20.0% |
| !! | AATGACTCTATATATGTTTA+AGG | - | chr8_4:9173755-9173774 | Msa1312210:intron | 20.0% |
| !! | ATGACTCTATATATGTTTAA+GGG | - | chr8_4:9173756-9173775 | Msa1312210:intron | 20.0% |
| !!! | TGAAGTTATTTGTTTTGAAA+AGG | - | chr8_4:9173829-9173848 | Msa1312210:intron | 20.0% |
| !!! | CAACAATCTTAATTTTCATA+TGG | - | chr8_4:9173942-9173961 | Msa1312210:intron | 20.0% |
| !!! | TTAATTTTCATATGGTTGAA+AGG | - | chr8_4:9173950-9173969 | Msa1312210:intron | 20.0% |
| !! | GATACATAAATAAAATTGAG+AGG | + | chr8_4:9174016-9174035 | None:intergenic | 20.0% |
| !! | AAAGTCTATTCATGATTAAT+TGG | + | chr8_4:9174134-9174153 | None:intergenic | 20.0% |
| !! | TCTTGTTAAAGAAATAGAAA+AGG | - | chr8_4:9174540-9174559 | Msa1312210:intron | 20.0% |
| !! | TTAAATGAGTACTTAGTTAT+GGG | + | chr8_4:9175122-9175141 | None:intergenic | 20.0% |
| ! | AAATGTTGAGAATAATGTGA+AGG | - | chr8_4:9171746-9171765 | Msa1312210:intron | 25.0% |
| ! | TTGAGTTCATTTCTGATTAT+TGG | - | chr8_4:9171798-9171817 | Msa1312210:intron | 25.0% |
| ! | TAACTTCAAAACAAGTGAAT+TGG | - | chr8_4:9171993-9172012 | Msa1312210:intron | 25.0% |
| !!! | AGAAAAAAGCTTTTGAAGTT+TGG | + | chr8_4:9172118-9172137 | None:intergenic | 25.0% |
| !!! | TTCAAAAGCTTTTTTCTTTG+AGG | - | chr8_4:9172121-9172140 | Msa1312210:intron | 25.0% |
| !!! | TCAAAAGCTTTTTTCTTTGA+GGG | - | chr8_4:9172122-9172141 | Msa1312210:intron | 25.0% |
| !!! | TATTCAATTTGTTAGCTCTT+AGG | - | chr8_4:9172198-9172217 | Msa1312210:intron | 25.0% |
| ! | ATTGTGTGGAATTAACAAAT+GGG | - | chr8_4:9172221-9172240 | Msa1312210:intron | 25.0% |
| ! | AATTTAAAGAATTAGTGTGC+AGG | - | chr8_4:9172540-9172559 | Msa1312210:intron | 25.0% |
| ! | TTTAACCCAAAATAGAAAAC+GGG | + | chr8_4:9172616-9172635 | None:intergenic | 25.0% |
| ! | TACAAGAATCATTTACATTG+CGG | + | chr8_4:9173640-9173659 | None:intergenic | 25.0% |
| !!! | TTTTTGCGTGGATTTTTTAA+AGG | - | chr8_4:9173682-9173701 | Msa1312210:intron | 25.0% |
| !!! | TTTTGCGTGGATTTTTTAAA+GGG | - | chr8_4:9173683-9173702 | Msa1312210:intron | 25.0% |
| !!! | ATTTTTTAAAGGGGTATTGT+TGG | - | chr8_4:9173693-9173712 | Msa1312210:intron | 25.0% |
| !!! | TTTTTTAAAGGGGTATTGTT+GGG | - | chr8_4:9173694-9173713 | Msa1312210:intron | 25.0% |
| ! | TCAAATTAACATTCTCTCTT+GGG | + | chr8_4:9174041-9174060 | None:intergenic | 25.0% |
| ! | TTAATCTAGGAATACAAACT+TGG | - | chr8_4:9174597-9174616 | Msa1312210:intron | 25.0% |
| ! | ATAACTCATCATGATTAAGT+AGG | + | chr8_4:9174805-9174824 | None:intergenic | 25.0% |
| ! | CTTAAATGAGTACTTAGTTA+TGG | + | chr8_4:9175123-9175142 | None:intergenic | 25.0% |
| !! | TCAATTGATGGTAATATAAC+TGG | + | chr8_4:9175182-9175201 | None:intergenic | 25.0% |
| ! | TCTGACATTACTGTAAATTT+AGG | - | chr8_4:9175260-9175279 | Msa1312210:intron | 25.0% |
| !!! | AACTATAAGTGTTACTTTTG+TGG | - | chr8_4:9175305-9175324 | Msa1312210:intron | 25.0% |
| ! | GTTATATGAAGGGTATGAAA+GGG | + | chr8_4:9171211-9171230 | None:intergenic | 30.0% |
| ! | TGTTATATGAAGGGTATGAA+AGG | + | chr8_4:9171212-9171231 | None:intergenic | 30.0% |
| ! | TGTGTGAAGTGTTATATGAA+GGG | + | chr8_4:9171221-9171240 | None:intergenic | 30.0% |
| ! | ATGTGTGAAGTGTTATATGA+AGG | + | chr8_4:9171222-9171241 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGGAGAGAGAAA+AGG | - | chr8_4:9171637-9171656 | Msa1312210:intron | 30.0% |
| TGAATAATCACAATGACAAG+AGG | - | chr8_4:9171834-9171853 | Msa1312210:intron | 30.0% | |
| AAGTGAATTGGAGATGAAAT+TGG | - | chr8_4:9172005-9172024 | Msa1312210:intron | 30.0% | |
| ATTGGAGATGAAATTGGATT+AGG | - | chr8_4:9172011-9172030 | Msa1312210:intron | 30.0% | |
| !!! | CAAAAGCTTTTTTCTTTGAG+GGG | - | chr8_4:9172123-9172142 | Msa1312210:intron | 30.0% |
| GATTGTGTGGAATTAACAAA+TGG | - | chr8_4:9172220-9172239 | Msa1312210:intron | 30.0% | |
| TTGTGTGGAATTAACAAATG+GGG | - | chr8_4:9172222-9172241 | Msa1312210:intron | 30.0% | |
| AAAAATGAGAGATTCGATCA+CGG | + | chr8_4:9172331-9172350 | None:intergenic | 30.0% | |
| ATTTGGACCTGTGAAAAAAT+TGG | - | chr8_4:9172370-9172389 | Msa1312210:intron | 30.0% | |
| ATTCAAAGTTGTGTACTTGT+TGG | - | chr8_4:9172455-9172474 | Msa1312210:CDS | 30.0% | |
| ! | TAATTCCCCGTTTTCTATTT+TGG | - | chr8_4:9172607-9172626 | Msa1312210:intron | 30.0% |
| ! | AATTCCCCGTTTTCTATTTT+GGG | - | chr8_4:9172608-9172627 | Msa1312210:intron | 30.0% |
| TTAACCCAAAATAGAAAACG+GGG | + | chr8_4:9172615-9172634 | None:intergenic | 30.0% | |
| ! | CACTTCTTTCAAGTAAAAAG+AGG | + | chr8_4:9173289-9173308 | None:intergenic | 30.0% |
| GTAAAATAGTACACTCTTCA+CGG | + | chr8_4:9173408-9173427 | None:intergenic | 30.0% | |
| AGAATCTATAAAGACACATG+AGG | + | chr8_4:9173583-9173602 | None:intergenic | 30.0% | |
| ! | AGTAACATTTCGAACTTGTT+TGG | - | chr8_4:9173603-9173622 | Msa1312210:intron | 30.0% |
| !!! | TTTGCGTGGATTTTTTAAAG+GGG | - | chr8_4:9173684-9173703 | Msa1312210:intron | 30.0% |
| ! | ATATGGTTGAAAGGAGTATA+AGG | - | chr8_4:9173959-9173978 | Msa1312210:intron | 30.0% |
| ! | TATGGTTGAAAGGAGTATAA+GGG | - | chr8_4:9173960-9173979 | Msa1312210:intron | 30.0% |
| TCAAAGACTATTCCAATTGT+TGG | + | chr8_4:9173990-9174009 | None:intergenic | 30.0% | |
| CAAATTAACATTCTCTCTTG+GGG | + | chr8_4:9174040-9174059 | None:intergenic | 30.0% | |
| CTCAAATTAACATTCTCTCT+TGG | + | chr8_4:9174042-9174061 | None:intergenic | 30.0% | |
| !! | AGGTTTCTGATTTTAGTCTT+TGG | - | chr8_4:9174358-9174377 | Msa1312210:intron | 30.0% |
| !! | GGTTTCTGATTTTAGTCTTT+GGG | - | chr8_4:9174359-9174378 | Msa1312210:intron | 30.0% |
| TTTATATTACCTTTCTCCCA+TGG | - | chr8_4:9175217-9175236 | Msa1312210:intron | 30.0% | |
| TTATAAATACCATGGGAGAA+AGG | + | chr8_4:9175229-9175248 | None:intergenic | 30.0% | |
| ! | TACTTTTGTGGTAAAATTGC+AGG | - | chr8_4:9175317-9175336 | Msa1312210:intron | 30.0% |
| AAAACAGCTGATGAAATTGA+AGG | + | chr8_4:9175484-9175503 | None:intergenic | 30.0% | |
| TTTCATACACACACATCAGA+AGG | - | chr8_4:9171249-9171268 | Msa1312210:three_prime_UTR | 35.0% | |
| ATTCTTCGAGGTTTATGCAT+GGG | - | chr8_4:9171412-9171431 | Msa1312210:CDS | 35.0% | |
| ACTTACCTGTTCATTCTAAG+TGG | - | chr8_4:9171506-9171525 | Msa1312210:CDS | 35.0% | |
| AAAGTCCACTTAGAATGAAC+AGG | + | chr8_4:9171514-9171533 | None:intergenic | 35.0% | |
| ! | TGTGGTCTTACATGTATTTG+TGG | - | chr8_4:9171894-9171913 | Msa1312210:intron | 35.0% |
| TGGAATTAACAAATGGGGTA+TGG | - | chr8_4:9172227-9172246 | Msa1312210:intron | 35.0% | |
| AAAATGAGAGATTCGATCAC+GGG | + | chr8_4:9172330-9172349 | None:intergenic | 35.0% | |
| !!! | AGTTGGACCAATTTTTTCAC+AGG | + | chr8_4:9172380-9172399 | None:intergenic | 35.0% |
| GTGAAAAAATTGGTCCAACT+TGG | - | chr8_4:9172380-9172399 | Msa1312210:intron | 35.0% | |
| ATCAATGGTCACCTTTATCT+TGG | + | chr8_4:9172407-9172426 | None:intergenic | 35.0% | |
| CAACTTTGAATCTGATCCAT+TGG | + | chr8_4:9172446-9172465 | None:intergenic | 35.0% | |
| TTTCCACGTTTCTTTAACTC+CGG | - | chr8_4:9173117-9173136 | Msa1312210:intron | 35.0% | |
| !!! | GAGTTTTTTAAGGGAAACAC+CGG | + | chr8_4:9173139-9173158 | None:intergenic | 35.0% |
| !!! | CCAACGTTGGAGTTTTTTAA+GGG | + | chr8_4:9173148-9173167 | None:intergenic | 35.0% |
| !!! | ACCAACGTTGGAGTTTTTTA+AGG | + | chr8_4:9173149-9173168 | None:intergenic | 35.0% |
| AAAAGAGGGTTCTATGACAT+TGG | + | chr8_4:9173198-9173217 | None:intergenic | 35.0% | |
| !!! | ATTGAAGTTTTGGTTCATGC+TGG | + | chr8_4:9173468-9173487 | None:intergenic | 35.0% |
| GCATGAACCAAAACTTCAAT+TGG | - | chr8_4:9173468-9173487 | Msa1312210:intron | 35.0% | |
| TTCAATTGGTCCAACCTAAA+TGG | - | chr8_4:9173482-9173501 | Msa1312210:intron | 35.0% | |
| !! | ATCAAAGAAAGGTGCCATTT+AGG | + | chr8_4:9173499-9173518 | None:intergenic | 35.0% |
| TATAAAGACACATGAGGCTA+AGG | + | chr8_4:9173577-9173596 | None:intergenic | 35.0% | |
| AAGGGAGCAATGAACAAATA+CGG | - | chr8_4:9173774-9173793 | Msa1312210:intron | 35.0% | |
| !! | TATAAGGGTACTCCAACAAT+TGG | - | chr8_4:9173975-9173994 | Msa1312210:intron | 35.0% |
| !! | TTTGAGTCACTGTTTTGAGT+AGG | - | chr8_4:9174056-9174075 | Msa1312210:intron | 35.0% |
| AACCAAGTATCACTTGAAAG+AGG | - | chr8_4:9174293-9174312 | Msa1312210:intron | 35.0% | |
| ! | ATGCTTTCTAGAAGGAATCA+CGG | + | chr8_4:9174474-9174493 | None:intergenic | 35.0% |
| !!! | ATGCATGGGTTATTTTTGCT+GGG | - | chr8_4:9174492-9174511 | Msa1312210:intron | 35.0% |
| !! | AGGAATACAAACTTGGTGTT+TGG | - | chr8_4:9174604-9174623 | Msa1312210:intron | 35.0% |
| !! | GGAATACAAACTTGGTGTTT+GGG | - | chr8_4:9174605-9174624 | Msa1312210:intron | 35.0% |
| !!! | GATTTTTGGCATCACCATAT+AGG | - | chr8_4:9174672-9174691 | Msa1312210:intron | 35.0% |
| ATGTAGGTCACAGATATTCA+TGG | + | chr8_4:9174849-9174868 | None:intergenic | 35.0% | |
| TACTTAGTTATGGGTCTGTT+AGG | + | chr8_4:9175113-9175132 | None:intergenic | 35.0% | |
| ! | ATAACTGGATATTTGCTAGC+TGG | + | chr8_4:9175167-9175186 | None:intergenic | 35.0% |
| AATTCCAGTGCGATTTAGAT+TGG | + | chr8_4:9175391-9175410 | None:intergenic | 35.0% | |
| TGGTCACAAAATTTGTGCAA+AGG | + | chr8_4:9175444-9175463 | None:intergenic | 35.0% | |
| GAAATTGAAGGCTATTGAGA+TGG | + | chr8_4:9175472-9175491 | None:intergenic | 35.0% | |
| AAGGGATAAGGATCATTGTA+TGG | + | chr8_4:9175587-9175606 | None:intergenic | 35.0% | |
| AAGGTAGTAATCAAGGGATA+AGG | + | chr8_4:9175599-9175618 | None:intergenic | 35.0% | |
| GACTACAAGGTAGTAATCAA+GGG | + | chr8_4:9175605-9175624 | None:intergenic | 35.0% | |
| TGACTACAAGGTAGTAATCA+AGG | + | chr8_4:9175606-9175625 | None:intergenic | 35.0% | |
| GATTCTTCGAGGTTTATGCA+TGG | - | chr8_4:9171411-9171430 | Msa1312210:CDS | 40.0% | |
| !!! | GTTTTGGAGAGAGAAAAGGA+AGG | - | chr8_4:9171641-9171660 | Msa1312210:intron | 40.0% |
| TCACAATGACAAGAGGTTCA+TGG | - | chr8_4:9171841-9171860 | Msa1312210:intron | 40.0% | |
| ! | TGTTAGCTCTTAGGATTGTG+TGG | - | chr8_4:9172207-9172226 | Msa1312210:intron | 40.0% |
| ! | ACCATAAAAAGTGCAGACCA+TGG | - | chr8_4:9172259-9172278 | Msa1312210:intron | 40.0% |
| TCCAACTTGGACCAAGATAA+AGG | - | chr8_4:9172393-9172412 | Msa1312210:intron | 40.0% | |
| ACCTTTATCTTGGTCCAAGT+TGG | + | chr8_4:9172397-9172416 | None:intergenic | 40.0% | |
| CAGTACAGCCAAGTTTACAT+AGG | + | chr8_4:9172503-9172522 | None:intergenic | 40.0% | |
| CTATGTAAACTTGGCTGTAC+TGG | - | chr8_4:9172501-9172520 | Msa1312210:CDS | 40.0% | |
| AAGAATTAGTGTGCAGGTGT+TGG | - | chr8_4:9172546-9172565 | Msa1312210:intron | 40.0% | |
| CCCTTAAAAAACTCCAACGT+TGG | - | chr8_4:9173145-9173164 | Msa1312210:intron | 40.0% | |
| AAAGCGAATTGAACCAACGT+TGG | + | chr8_4:9173161-9173180 | None:intergenic | 40.0% | |
| ! | GGTTGGACCAATTGAAGTTT+TGG | + | chr8_4:9173478-9173497 | None:intergenic | 40.0% |
| !! | AAGAAAGGTGCCATTTAGGT+TGG | + | chr8_4:9173495-9173514 | None:intergenic | 40.0% |
| !!! | TTGATCGTGACTTTTTTGCG+TGG | - | chr8_4:9173670-9173689 | Msa1312210:intron | 40.0% |
| ! | GACCTCTTTCAAGTGATACT+TGG | + | chr8_4:9174298-9174317 | None:intergenic | 40.0% |
| TCTTTGGGCAGATTTCTTGT+TGG | - | chr8_4:9174374-9174393 | Msa1312210:intron | 40.0% | |
| CTTTGGGCAGATTTCTTGTT+GGG | - | chr8_4:9174375-9174394 | Msa1312210:intron | 40.0% | |
| TTTGGGCAGATTTCTTGTTG+GGG | - | chr8_4:9174376-9174395 | Msa1312210:intron | 40.0% | |
| TCATTGCTGCAACTACTCAT+TGG | - | chr8_4:9174422-9174441 | Msa1312210:intron | 40.0% | |
| TTGGCACGTCAAGATTTCTT+AGG | - | chr8_4:9174441-9174460 | Msa1312210:intron | 40.0% | |
| TGGCACGTCAAGATTTCTTA+GGG | - | chr8_4:9174442-9174461 | Msa1312210:intron | 40.0% | |
| ! | TTCCTTCTAGAAAGCATGCA+TGG | - | chr8_4:9174477-9174496 | Msa1312210:intron | 40.0% |
| ! | TCCTTCTAGAAAGCATGCAT+GGG | - | chr8_4:9174478-9174497 | Msa1312210:intron | 40.0% |
| !!! | CATGCATGGGTTATTTTTGC+TGG | - | chr8_4:9174491-9174510 | Msa1312210:intron | 40.0% |
| !!! | TGCATGGGTTATTTTTGCTG+GGG | - | chr8_4:9174493-9174512 | Msa1312210:intron | 40.0% |
| ! | GAGAACTCGAGCTTGATTTT+TGG | - | chr8_4:9174658-9174677 | Msa1312210:intron | 40.0% |
| GGGTTAGACTATCTCCTATA+TGG | + | chr8_4:9174689-9174708 | None:intergenic | 40.0% | |
| ! | CAAAGTATTCGCACGACTTA+AGG | + | chr8_4:9174777-9174796 | None:intergenic | 40.0% |
| TAAGTCGTGCGAATACTTTG+AGG | - | chr8_4:9174777-9174796 | Msa1312210:intron | 40.0% | |
| GCTTATGCATTAATGAGTGC+TGG | - | chr8_4:9175345-9175364 | Msa1312210:intron | 40.0% | |
| GTAACCAATCTAAATCGCAC+TGG | - | chr8_4:9175384-9175403 | Msa1312210:CDS | 40.0% | |
| TGCAAAGGCTTGCAAAAGTT+TGG | + | chr8_4:9175429-9175448 | None:intergenic | 40.0% | |
| CTGCTGTGCATGATGTTATA+TGG | - | chr8_4:9175517-9175536 | Msa1312210:CDS | 40.0% | |
| CTACCTTGTAGTCAATGTTC+TGG | - | chr8_4:9175612-9175631 | Msa1312210:exon | 40.0% | |
| ! | AAGCCAGAACATTGACTACA+AGG | + | chr8_4:9175618-9175637 | None:intergenic | 40.0% |
| GTATGAAAGGGTGAGTTAGG+AGG | + | chr8_4:9171199-9171218 | None:intergenic | 45.0% | |
| AGGGTATGAAAGGGTGAGTT+AGG | + | chr8_4:9171202-9171221 | None:intergenic | 45.0% | |
| ATAGCTCCTCCAAGAGATCA+TGG | - | chr8_4:9171273-9171292 | Msa1312210:three_prime_UTR | 45.0% | |
| !! | ACAGCATCTTTAGAGTGCAG+TGG | - | chr8_4:9171310-9171329 | Msa1312210:three_prime_UTR | 45.0% |
| AGTGGATCAACCAGAATGAG+TGG | - | chr8_4:9171328-9171347 | Msa1312210:three_prime_UTR | 45.0% | |
| AGCAGCTCTGTCTCTATCTA+TGG | - | chr8_4:9171478-9171497 | Msa1312210:CDS | 45.0% | |
| !! | GCCATGGTCTGCACTTTTTA+TGG | + | chr8_4:9172263-9172282 | None:intergenic | 45.0% |
| ! | TGACTTTTCACACAACGCCA+TGG | + | chr8_4:9172279-9172298 | None:intergenic | 45.0% |
| ! | AAGTTGTGTACTTGTTGGCC+AGG | - | chr8_4:9172460-9172479 | Msa1312210:CDS | 45.0% |
| AACCCGCACCTATGTAAACT+TGG | - | chr8_4:9172492-9172511 | Msa1312210:CDS | 45.0% | |
| AGCCAAGTTTACATAGGTGC+GGG | + | chr8_4:9172497-9172516 | None:intergenic | 45.0% | |
| CAGCCAAGTTTACATAGGTG+CGG | + | chr8_4:9172498-9172517 | None:intergenic | 45.0% | |
| ACACCGGAGTTAAAGAAACG+TGG | + | chr8_4:9173123-9173142 | None:intergenic | 45.0% | |
| CAATCAAAGCTACCTGGTAC+TGG | + | chr8_4:9173443-9173462 | None:intergenic | 45.0% | |
| !! | CAGTACCAGGTAGCTTTGAT+TGG | - | chr8_4:9173441-9173460 | Msa1312210:intron | 45.0% |
| !! | AAAGGGGTATTGTTGGGCAT+TGG | - | chr8_4:9173700-9173719 | Msa1312210:intron | 45.0% |
| GAGTAGTTGCAGCAATGAGT+GGG | + | chr8_4:9174420-9174439 | None:intergenic | 45.0% | |
| TGAGTAGTTGCAGCAATGAG+TGG | + | chr8_4:9174421-9174440 | None:intergenic | 45.0% | |
| ACCCATGCATGCTTTCTAGA+AGG | + | chr8_4:9174482-9174501 | None:intergenic | 45.0% | |
| !!! | GGTTATTTTTGCTGGGGATC+AGG | - | chr8_4:9174499-9174518 | Msa1312210:intron | 45.0% |
| TCAAGCTCGAGTTCTCTTCT+TGG | + | chr8_4:9174654-9174673 | None:intergenic | 45.0% | |
| GGCTTGCAAAAGTTTGGAAG+AGG | + | chr8_4:9175423-9175442 | None:intergenic | 45.0% | |
| AGGCTATTGAGATGGCAACA+TGG | + | chr8_4:9175464-9175483 | None:intergenic | 45.0% | |
| AACATCATGCACAGCAGATG+TGG | + | chr8_4:9175514-9175533 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTAAAATTG+TGG | - | chr8_4:9171876-9171895 | Msa1312210:intron | 5.0% |
| !!! | ATTAAGAATTTTTATATTTT+TGG | + | chr8_4:9172872-9172891 | None:intergenic | 5.0% |
| AAGGGTGAGTTAGGAGGTGA+CGG | + | chr8_4:9171193-9171212 | None:intergenic | 50.0% | |
| CACTCACCATGATCTCTTGG+AGG | + | chr8_4:9171282-9171301 | None:intergenic | 50.0% | |
| GCTCACTCACCATGATCTCT+TGG | + | chr8_4:9171285-9171304 | None:intergenic | 50.0% | |
| !! | GTGATGCTGCTGATTCTTCG+AGG | - | chr8_4:9171400-9171419 | Msa1312210:CDS | 50.0% |
| ! | CTGGTACTGGAGGTTTCTTC+AGG | + | chr8_4:9173430-9173449 | None:intergenic | 50.0% |
| CTGAAGAAACCTCCAGTACC+AGG | - | chr8_4:9173428-9173447 | Msa1312210:intron | 50.0% | |
| ! | TCAAAGCTACCTGGTACTGG+AGG | + | chr8_4:9173440-9173459 | None:intergenic | 50.0% |
| CTGGACCAATCAAAGCTACC+TGG | + | chr8_4:9173449-9173468 | None:intergenic | 50.0% | |
| ! | CGAACTTGTTTGGCGTGTTC+TGG | - | chr8_4:9173613-9173632 | Msa1312210:intron | 50.0% |
| AGCTCGAGTTCTCTTCTTGG+TGG | + | chr8_4:9174651-9174670 | None:intergenic | 50.0% | |
| AACGAGGGGACCACTCATTC+TGG | + | chr8_4:9171341-9171360 | None:intergenic | 55.0% | |
| AGAATGAGTGGTCCCCTCGT+TGG | - | chr8_4:9171340-9171359 | Msa1312210:three_prime_UTR | 55.0% | |
| ! | GTGCGGGTTACATTGCAACC+TGG | + | chr8_4:9172481-9172500 | None:intergenic | 55.0% |
| !! | CAGCAATGAGTGGGCTGCAA+CGG | + | chr8_4:9174411-9174430 | None:intergenic | 55.0% |
| ! | AGTGCTGGATCAGCTGCATC+TGG | - | chr8_4:9175360-9175379 | Msa1312210:intron | 55.0% |
| ! | GGTGAGTTAGGAGGTGACGG+TGG | + | chr8_4:9171190-9171209 | None:intergenic | 60.0% |
| AGTGGTCCCCTCGTTGGAGA+CGG | - | chr8_4:9171346-9171365 | Msa1312210:exon | 60.0% | |
| TTCTCGCCGTCTCCAACGAG+GGG | + | chr8_4:9171355-9171374 | None:intergenic | 60.0% | |
| CTTCTCGCCGTCTCCAACGA+GGG | + | chr8_4:9171356-9171375 | None:intergenic | 60.0% | |
| TCTTCTCGCCGTCTCCAACG+AGG | + | chr8_4:9171357-9171376 | None:intergenic | 60.0% | |
| GCAGCATCACCTCCGTTCTC+CGG | + | chr8_4:9171390-9171409 | None:intergenic | 60.0% | |
| GCGAGAAGACCAGTCGACGC+CGG | - | chr8_4:9171368-9171387 | Msa1312210:CDS | 65.0% | |
| GACCAGTCGACGCCGGAGAA+CGG | - | chr8_4:9171375-9171394 | Msa1312210:CDS | 65.0% | |
| !! | CTCCGTTCTCCGGCGTCGAC+TGG | + | chr8_4:9171380-9171399 | None:intergenic | 70.0% |
| CAGTCGACGCCGGAGAACGG+AGG | - | chr8_4:9171378-9171397 | Msa1312210:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 9171166 | 9175748 | 9171166 | ID=Msa1312210;Name=Msa1312210 |
| chr8_4 | mRNA | 9171166 | 9175748 | 9171166 | ID=Msa1312210-mRNA-1;Parent=Msa1312210;Name=Msa1312210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=126|1|1|1|1|1|3|194|202 |
| chr8_4 | exon | 9171166 | 9171575 | 9171166 | ID=Msa1312210-mRNA-1:exon:3376;Parent=Msa1312210-mRNA-1 |
| chr8_4 | exon | 9172394 | 9172529 | 9172394 | ID=Msa1312210-mRNA-1:exon:3375;Parent=Msa1312210-mRNA-1 |
| chr8_4 | exon | 9175366 | 9175748 | 9175366 | ID=Msa1312210-mRNA-1:exon:3374;Parent=Msa1312210-mRNA-1 |
| chr8_4 | five_prime_UTR | 9175623 | 9175748 | 9175623 | ID=Msa1312210-mRNA-1:five_prime_utr;Parent=Msa1312210-mRNA-1 |
| chr8_4 | CDS | 9175366 | 9175622 | 9175366 | ID=Msa1312210-mRNA-1:cds;Parent=Msa1312210-mRNA-1 |
| chr8_4 | CDS | 9172394 | 9172529 | 9172394 | ID=Msa1312210-mRNA-1:cds;Parent=Msa1312210-mRNA-1 |
| chr8_4 | CDS | 9171360 | 9171575 | 9171360 | ID=Msa1312210-mRNA-1:cds;Parent=Msa1312210-mRNA-1 |
| chr8_4 | three_prime_UTR | 9171166 | 9171359 | 9171166 | ID=Msa1312210-mRNA-1:three_prime_utr;Parent=Msa1312210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
