AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1231440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1231440 MtrunA17_Chr8g0340351 98.020 202 4 0 1 202 1 202 1.85e-145 402
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1231440 AT3G16300.1 48.045 179 93 0 24 202 33 211 3.50e-53 169
Msa1231440 AT1G79780.1 47.191 178 91 1 26 200 8 185 2.87e-51 164

Find 52 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCACGTCAAGATTTCTT+AGG 0.200483 8_2:-7580435 Msa1231440:CDS
CTTTGGGCAGATTTCTTGTT+GGG 0.281342 8_2:-7580501 Msa1231440:intron
AGAGTATGAAAGGGTGAGTT+AGG 0.325182 8_2:+7582902 None:intergenic
CTGCTGTGCATGATGTTATA+TGG 0.353776 8_2:-7579317 Msa1231440:CDS
CTCCGTTCTCCGGCGTCGAC+TGG 0.358436 8_2:+7582724 None:intergenic
CTACCTTGTAGTCAATGTTC+TGG 0.359261 8_2:-7579222 Msa1231440:three_prime_UTR
AGCAGTTCTGTCTCTATCTA+TGG 0.366482 8_2:-7582623 Msa1231440:CDS
GCTCACTCACCATGATCTCT+TGG 0.383607 8_2:+7582819 None:intergenic
TCTTTGGGCAGATTTCTTGT+TGG 0.386386 8_2:-7580502 Msa1231440:intron
AGTGCTGGATCAGCTGCATC+TGG 0.402362 8_2:-7579474 Msa1231440:CDS
AATTCCAGTGCGATTTAGAT+TGG 0.408297 8_2:+7579446 None:intergenic
AAAACAGCTGATGAAATTGA+AGG 0.435057 8_2:+7579353 None:intergenic
GATTCTTCGAGCTTTATGTA+TGG 0.438398 8_2:-7582690 Msa1231440:CDS
GCTTATGCATTGATGAGTGC+TGG 0.443070 8_2:-7579489 Msa1231440:CDS
AAAGTCCACTTAGAATGAAC+AGG 0.463744 8_2:+7582590 None:intergenic
TGGCACGTCAAGATTTCTTA+GGG 0.465265 8_2:-7580434 Msa1231440:CDS
ACTTACCTGTTCATTCTAAG+TGG 0.469506 8_2:-7582595 Msa1231440:CDS
TGACTACAAGGTAGTAATCA+AGG 0.476186 8_2:+7579231 None:intergenic
GCAGCATCACCTCCGTTCTC+CGG 0.490610 8_2:+7582714 None:intergenic
TCATTGCTGCAACTACTCAT+TGG 0.498018 8_2:-7580454 Msa1231440:CDS
AAGGTAGTAATCAAGGGATA+AGG 0.498736 8_2:+7579238 None:intergenic
AAGGGATAAGGATCATTGTA+TGG 0.501634 8_2:+7579250 None:intergenic
AAAGAAAATTACTCATATGA+AGG 0.512833 8_2:+7582563 None:intergenic
CAGCAATGAGTGGGCTGCAA+CGG 0.516377 8_2:+7580468 None:intergenic
CACTCACCATGATCTCTTGG+AGG 0.519731 8_2:+7582822 None:intergenic
GTATGAAAGGGTGAGTTAGG+AGG 0.524040 8_2:+7582905 None:intergenic
TGTTATATGAAGAGTATGAA+AGG 0.526023 8_2:+7582892 None:intergenic
ATTCTTCGAGCTTTATGTAT+GGG 0.528194 8_2:-7582689 Msa1231440:CDS
TTTGGGCAGATTTCTTGTTG+GGG 0.529337 8_2:-7580500 Msa1231440:intron
AGTGGTCCTCTCGTCGGAGA+CGG 0.540971 8_2:-7582755 Msa1231440:CDS
TTTCTTCTAGAAAGCATGCA+TGG 0.543498 8_2:-7580399 Msa1231440:CDS
GTTATATGAAGAGTATGAAA+GGG 0.543754 8_2:+7582893 None:intergenic
TTCTTCTAGAAAGCATGCAT+GGG 0.549266 8_2:-7580398 Msa1231440:CDS
ATAGCTCCTCCAAGAGATCA+TGG 0.549376 8_2:-7582828 Msa1231440:exon
GTAACCAATCTAAATCGCAC+TGG 0.549479 8_2:-7579450 Msa1231440:CDS
GACCAGTCGACGCCGGAGAA+CGG 0.550612 8_2:-7582726 Msa1231440:CDS
AAGCCAGAACATTGACTACA+AGG 0.572324 8_2:+7579219 None:intergenic
TGGTCACAAAATTTGTGCAA+AGG 0.572337 8_2:+7579393 None:intergenic
AAGGGTGAGTTAGGAGGTGA+CGG 0.585072 8_2:+7582911 None:intergenic
TTTAATACACACACATCAGA+AGG 0.588527 8_2:-7582852 Msa1231440:five_prime_UTR
TGAGTAGTTGCAGCAATGAG+TGG 0.588948 8_2:+7580458 None:intergenic
GACTACAAGGTAGTAATCAA+GGG 0.599512 8_2:+7579232 None:intergenic
AACATCATGCACAGCAGATG+TGG 0.599570 8_2:+7579323 None:intergenic
GCGAAAAGACCAGTCGACGC+CGG 0.613120 8_2:-7582733 Msa1231440:CDS
GAAATTGAAGGCTATTGAGA+TGG 0.617309 8_2:+7579365 None:intergenic
GGTGAGTTAGGAGGTGACGG+TGG 0.626305 8_2:+7582914 None:intergenic
AGAATGAGTGGTCCTCTCGT+CGG 0.640368 8_2:-7582761 Msa1231440:CDS
ACAGCAGCTTTAGAGTGCAG+TGG 0.647077 8_2:-7582791 Msa1231440:CDS
CAGTCGACGCCGGAGAACGG+AGG 0.650567 8_2:-7582723 Msa1231440:CDS
AGTGGATCAACTAGAATGAG+TGG 0.652710 8_2:-7582773 Msa1231440:CDS
AGGCTATTGAGATGGCAACA+TGG 0.653048 8_2:+7579373 None:intergenic
GAGTAGTTGCAGCAATGAGT+GGG 0.669558 8_2:+7580459 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTTAAAAGTTTTTTTTT+AGG - chr8_2:7580090-7580109 Msa1231440:intron 10.0%
!!! ACTTTAAAAGTTTTTTTTTA+GGG - chr8_2:7580091-7580110 Msa1231440:intron 10.0%
!!! AAAACTTTTTTTTTTTTTGA+AGG + chr8_2:7580120-7580139 None:intergenic 10.0%
!!! AAAAAAAAAAGTTTTTTTAG+GGG - chr8_2:7580125-7580144 Msa1231440:intron 10.0%
!!! AGTTTTGATATATTATTTTT+TGG - chr8_2:7580159-7580178 Msa1231440:intron 10.0%
!!! AATGAAATTATTTTCTTAAA+AGG - chr8_2:7580688-7580707 Msa1231440:intron 10.0%
!!! TTAGTTTTATATTAAAATGT+AGG - chr8_2:7581505-7581524 Msa1231440:intron 10.0%
!! TAACAATTTATAAATACTAT+AGG + chr8_2:7582445-7582464 None:intergenic 10.0%
!!! ATTTATAGTTGTTTTTGTTT+TGG - chr8_2:7579568-7579587 Msa1231440:intron 15.0%
!!! TTGAGTTCATTTTTTATTAT+TGG - chr8_2:7579708-7579727 Msa1231440:intron 15.0%
!! AAAAAAAAAAGTTAAATGGA+AGG - chr8_2:7580004-7580023 Msa1231440:intron 15.0%
!!! TTAAAATCAGTTTTTAAATG+AGG - chr8_2:7580029-7580048 Msa1231440:intron 15.0%
!!! TCTTTTTTTTCTTTTCAATT+AGG - chr8_2:7580060-7580079 Msa1231440:intron 15.0%
!!! CTTTTTTTTCTTTTCAATTA+GGG - chr8_2:7580061-7580080 Msa1231440:intron 15.0%
!!! TTTTTTTTCTTTTCAATTAG+GGG - chr8_2:7580062-7580081 Msa1231440:intron 15.0%
!!! CTTTAAAAGTTTTTTTTTAG+GGG - chr8_2:7580092-7580111 Msa1231440:intron 15.0%
!!! TAATATATCAAAACTTTTGA+AGG + chr8_2:7580154-7580173 None:intergenic 15.0%
!!! TTTTTGTGTTGATTTTTTAA+AGG - chr8_2:7580541-7580560 Msa1231440:intron 15.0%
!!! TTTTGTGTTGATTTTTTAAA+GGG - chr8_2:7580542-7580561 Msa1231440:intron 15.0%
!! TAATATCTGATGTAAAATTT+AGG - chr8_2:7580787-7580806 Msa1231440:intron 15.0%
!! AATATCTGATGTAAAATTTA+GGG - chr8_2:7580788-7580807 Msa1231440:intron 15.0%
!!! TTTAATTTCATATAGTTGAA+GGG - chr8_2:7580829-7580848 Msa1231440:intron 15.0%
!!! TTGATATATAAATTTTTACG+TGG - chr8_2:7581102-7581121 Msa1231440:intron 15.0%
!!! ATATGCATTTTTTTTTTTGA+GGG + chr8_2:7581148-7581167 None:intergenic 15.0%
!!! TATATGCATTTTTTTTTTTG+AGG + chr8_2:7581149-7581168 None:intergenic 15.0%
!! ATGATAATCAAAATTAATCT+AGG - chr8_2:7581776-7581795 Msa1231440:intron 15.0%
!! AGACATATGATTATTTATTA+GGG + chr8_2:7581906-7581925 None:intergenic 15.0%
!!! TATTTTTATGTAGGTTATAT+AGG + chr8_2:7582057-7582076 None:intergenic 15.0%
!! AAAGAAAATTACTCATATGA+AGG + chr8_2:7579483-7579502 None:intergenic 20.0%
!! AGAAAATATTCATTGATAAG+AGG - chr8_2:7579685-7579704 Msa1231440:intron 20.0%
!! AATTGAATTTGAATATTCAC+TGG - chr8_2:7579735-7579754 Msa1231440:intron 20.0%
!! AATGTTTGTGTTAATAATAG+AGG + chr8_2:7579879-7579898 None:intergenic 20.0%
!!! GAAGTTATTTTTTATCGATA+TGG + chr8_2:7579939-7579958 None:intergenic 20.0%
!! GAAAAATAGTTGAAAAAGAA+AGG + chr8_2:7580387-7580406 None:intergenic 20.0%
!! TGGTTAAGCAATTTATAAAA+AGG - chr8_2:7580579-7580598 Msa1231440:intron 20.0%
!!! GTTTAATTTCATATAGTTGA+AGG - chr8_2:7580828-7580847 Msa1231440:intron 20.0%
!! GGTGATACATAAATAAAATT+GGG + chr8_2:7580897-7580916 None:intergenic 20.0%
!!! TAATATAAAGTCTTATCCAT+AGG + chr8_2:7580961-7580980 None:intergenic 20.0%
!! TGTGATAATTCATGATTAAT+TGG + chr8_2:7581017-7581036 None:intergenic 20.0%
!!! AGGTTTATGATTTTTATCTT+TGG - chr8_2:7581525-7581544 Msa1231440:intron 20.0%
!!! GGTTTATGATTTTTATCTTT+GGG - chr8_2:7581526-7581545 Msa1231440:intron 20.0%
!! AAATATACAAACTTAGTGTT+GGG - chr8_2:7581799-7581818 Msa1231440:intron 20.0%
!! GAGACATATGATTATTTATT+AGG + chr8_2:7581907-7581926 None:intergenic 20.0%
!! ATAAAAATACAAGCTATGTT+TGG - chr8_2:7582068-7582087 Msa1231440:intron 20.0%
!! TAAAGTAAACAATCAATTGA+TGG + chr8_2:7582403-7582422 None:intergenic 20.0%
!! TTATAAATACTATAGGAGAA+AGG + chr8_2:7582438-7582457 None:intergenic 20.0%
!! GTTATATGAAGAGTATGAAA+GGG + chr8_2:7579153-7579172 None:intergenic 25.0%
!! TGTTATATGAAGAGTATGAA+AGG + chr8_2:7579154-7579173 None:intergenic 25.0%
! TTATGTTGAGAATAATGTGA+AGG - chr8_2:7579656-7579675 Msa1231440:intron 25.0%
! CAAGAAAATACAACAAAGAA+AGG + chr8_2:7579781-7579800 None:intergenic 25.0%
!!! CTTTCTTTGTTGTATTTTCT+TGG - chr8_2:7579779-7579798 Msa1231440:intron 25.0%
! TAACTTCAAAACAAGTGAAT+TGG - chr8_2:7579952-7579971 Msa1231440:intron 25.0%
!!! TATTCAATTTGTTAGCTCTT+AGG - chr8_2:7580200-7580219 Msa1231440:intron 25.0%
!!! ATTCAATTTGTTAGCTCTTA+GGG - chr8_2:7580201-7580220 Msa1231440:intron 25.0%
!! AGTAATATTTCGAACTTGTT+TGG - chr8_2:7580457-7580476 Msa1231440:CDS 25.0%
! TACAAGAATCATTTACATTG+CGG + chr8_2:7580494-7580513 None:intergenic 25.0%
! GATACATAAATAAAATTGGG+AGG + chr8_2:7580894-7580913 None:intergenic 25.0%
! GGGTGATACATAAATAAAAT+TGG + chr8_2:7580898-7580917 None:intergenic 25.0%
! TCAAATTAACATTCTCTCTT+GGG + chr8_2:7580919-7580938 None:intergenic 25.0%
! CTGTAAATAGACTATTAGAT+TGG - chr8_2:7581253-7581272 Msa1231440:intron 25.0%
!!! AGCTTTTGATTTCAAGTTAA+TGG - chr8_2:7581346-7581365 Msa1231440:intron 25.0%
!!! TTTTGATTTCAAGTTAATGG+AGG - chr8_2:7581349-7581368 Msa1231440:intron 25.0%
! GAGTTGAAACTATAGATATT+TGG + chr8_2:7581378-7581397 None:intergenic 25.0%
! GAAATATACAAACTTAGTGT+TGG - chr8_2:7581798-7581817 Msa1231440:intron 25.0%
! ATAATTAAGTAGTTGCCTTA+AGG + chr8_2:7581988-7582007 None:intergenic 25.0%
!!! CATAGCTTGTATTTTTATGT+AGG + chr8_2:7582066-7582085 None:intergenic 25.0%
!! TCAATTGATGGTAATATAAC+TGG + chr8_2:7582391-7582410 None:intergenic 25.0%
! TCTGACATTACTGTAAATTT+AGG - chr8_2:7582469-7582488 Msa1231440:intron 25.0%
TTTAATACACACACATCAGA+AGG - chr8_2:7579191-7579210 Msa1231440:three_prime_UTR 30.0%
! ATTCTTCGAGCTTTATGTAT+GGG - chr8_2:7579354-7579373 Msa1231440:CDS 30.0%
!!! TTTTGTTTTGGAGAGAGAAA+AGG - chr8_2:7579580-7579599 Msa1231440:intron 30.0%
!! TGTGGTCTTATATGTATTTG+TGG - chr8_2:7579852-7579871 Msa1231440:intron 30.0%
AAGTGAATTGGAGATGAAAT+TGG - chr8_2:7579964-7579983 Msa1231440:intron 30.0%
ATTGGAGATGAAATTGGATT+AGG - chr8_2:7579970-7579989 Msa1231440:intron 30.0%
GTTGTGTGGAATTAACAAAT+GGG - chr8_2:7580223-7580242 Msa1231440:intron 30.0%
!! TGGAATTAACAAATGGGTTA+TGG - chr8_2:7580229-7580248 Msa1231440:intron 30.0%
AAAAATGAGAGATTCGATCA+CGG + chr8_2:7580333-7580352 None:intergenic 30.0%
GAATCTATAAAAGACACATG+AGG + chr8_2:7580436-7580455 None:intergenic 30.0%
TCTACTTAGCATATGTTCAA+GGG - chr8_2:7580621-7580640 Msa1231440:intron 30.0%
!!! GAACGAAATACGGTTTTAAA+TGG - chr8_2:7580650-7580669 Msa1231440:intron 30.0%
! ATATAGTTGAAGGGAGTATA+AGG - chr8_2:7580838-7580857 Msa1231440:intron 30.0%
! TATAGTTGAAGGGAGTATAA+GGG - chr8_2:7580839-7580858 Msa1231440:intron 30.0%
CAAATTAACATTCTCTCTTG+GGG + chr8_2:7580918-7580937 None:intergenic 30.0%
CTCAAATTAACATTCTCTCT+TGG + chr8_2:7580920-7580939 None:intergenic 30.0%
!!! GCTCTGATTTTTGAAGTAAT+TGG + chr8_2:7581064-7581083 None:intergenic 30.0%
TTGTGTTATCTACTTTGATC+CGG - chr8_2:7581206-7581225 Msa1231440:intron 30.0%
! GGATTGAAGATGATTTTGAA+GGG - chr8_2:7581296-7581315 Msa1231440:intron 30.0%
GGATCAGGTACATATATATA+TGG - chr8_2:7581681-7581700 Msa1231440:intron 30.0%
ATGTAGGTCACAAATATTCA+TGG + chr8_2:7582032-7582051 None:intergenic 30.0%
!! TTGAGTACTGAAATAGCTTA+TGG + chr8_2:7582289-7582308 None:intergenic 30.0%
!!! AACTATGAGTGTTACTTTTG+TGG - chr8_2:7582514-7582533 Msa1231440:intron 30.0%
! TACTTTTGTGGTAAAATTGC+AGG - chr8_2:7582526-7582545 Msa1231440:intron 30.0%
AAAACAGCTGATGAAATTGA+AGG + chr8_2:7582693-7582712 None:intergenic 30.0%
! GATTCTTCGAGCTTTATGTA+TGG - chr8_2:7579353-7579372 Msa1231440:CDS 35.0%
ACTTACCTGTTCATTCTAAG+TGG - chr8_2:7579448-7579467 Msa1231440:CDS 35.0%
AAAGTCCACTTAGAATGAAC+AGG + chr8_2:7579456-7579475 None:intergenic 35.0%
GGTTGTGTGGAATTAACAAA+TGG - chr8_2:7580222-7580241 Msa1231440:intron 35.0%
AAAATGAGAGATTCGATCAC+GGG + chr8_2:7580332-7580351 None:intergenic 35.0%
ATAAAAGACACATGAGGCTA+AGG + chr8_2:7580430-7580449 None:intergenic 35.0%
!!! TTTTTTAAAGGGCTACCGTT+AGG - chr8_2:7580553-7580572 Msa1231440:intron 35.0%
ATTGCTTAACCAATGCCTAA+CGG + chr8_2:7580571-7580590 None:intergenic 35.0%
CTCTACTTAGCATATGTTCA+AGG - chr8_2:7580620-7580639 Msa1231440:intron 35.0%
ATGTTTCTTACATGTCTCTC+CGG + chr8_2:7581228-7581247 None:intergenic 35.0%
GAGAGACATGTAAGAAACAT+TGG - chr8_2:7581228-7581247 Msa1231440:intron 35.0%
! CGGATTGAAGATGATTTTGA+AGG - chr8_2:7581295-7581314 Msa1231440:intron 35.0%
AACCAAGTATCACTTGAAAG+TGG - chr8_2:7581460-7581479 Msa1231440:intron 35.0%
! TTTCTTCTAGAAAGCATGCA+TGG - chr8_2:7581644-7581663 Msa1231440:intron 35.0%
! TTCTTCTAGAAAGCATGCAT+GGG - chr8_2:7581645-7581664 Msa1231440:intron 35.0%
!!! ATGCATGGGTTATTTTTGCT+GGG - chr8_2:7581659-7581678 Msa1231440:intron 35.0%
TAAGTCTTGCGAATACCTTA+AGG - chr8_2:7581970-7581989 Msa1231440:intron 35.0%
GTAGGTTATATAGGCAATGT+AGG + chr8_2:7582048-7582067 None:intergenic 35.0%
CTCAAATGAGTCAATCCTAA+CGG - chr8_2:7582304-7582323 Msa1231440:intron 35.0%
AACTTAGTTATGAGTCCGTT+AGG + chr8_2:7582322-7582341 None:intergenic 35.0%
! TAACTGGATATTTGCTAGCT+GGG + chr8_2:7582375-7582394 None:intergenic 35.0%
! ATAACTGGATATTTGCTAGC+TGG + chr8_2:7582376-7582395 None:intergenic 35.0%
AATTCCAGTGCGATTTAGAT+TGG + chr8_2:7582600-7582619 None:intergenic 35.0%
TGCAAAGGCTTGCAAAAATT+TGG + chr8_2:7582638-7582657 None:intergenic 35.0%
TGGTCACAAAATTTGTGCAA+AGG + chr8_2:7582653-7582672 None:intergenic 35.0%
GAAATTGAAGGCTATTGAGA+TGG + chr8_2:7582681-7582700 None:intergenic 35.0%
AAGGGATAAGGATCATTGTA+TGG + chr8_2:7582796-7582815 None:intergenic 35.0%
AAGGTAGTAATCAAGGGATA+AGG + chr8_2:7582808-7582827 None:intergenic 35.0%
GACTACAAGGTAGTAATCAA+GGG + chr8_2:7582814-7582833 None:intergenic 35.0%
TGACTACAAGGTAGTAATCA+AGG + chr8_2:7582815-7582834 None:intergenic 35.0%
AGAGTATGAAAGGGTGAGTT+AGG + chr8_2:7579144-7579163 None:intergenic 40.0%
AGTGGATCAACTAGAATGAG+TGG - chr8_2:7579270-7579289 Msa1231440:three_prime_UTR 40.0%
AGCAGTTCTGTCTCTATCTA+TGG - chr8_2:7579420-7579439 Msa1231440:CDS 40.0%
!!! GTTTTGGAGAGAGAAAAGGA+AGG - chr8_2:7579584-7579603 Msa1231440:intron 40.0%
!! TTTTCTTGGTGACCGAAAAG+AGG - chr8_2:7579793-7579812 Msa1231440:intron 40.0%
! CATTGCCATGAACCTCTTTT+CGG + chr8_2:7579808-7579827 None:intergenic 40.0%
! ACCATAAAAAGTGCAGACCA+TGG - chr8_2:7580261-7580280 Msa1231440:intron 40.0%
AGGGAGCAATGAACGAAATA+CGG - chr8_2:7580640-7580659 Msa1231440:intron 40.0%
!! TATAAGGGTACTCCACCAAT+TGG - chr8_2:7580854-7580873 Msa1231440:intron 40.0%
CTCAAGACTATTCCAATTGG+TGG + chr8_2:7580869-7580888 None:intergenic 40.0%
GCACTCAAGACTATTCCAAT+TGG + chr8_2:7580872-7580891 None:intergenic 40.0%
!! TTTGAGTCACCGTTTTGAGT+AGG - chr8_2:7580934-7580953 Msa1231440:intron 40.0%
TCCATAGGACCTACTCAAAA+CGG + chr8_2:7580946-7580965 None:intergenic 40.0%
! GTTTGAGACTCTCATTAGAG+CGG - chr8_2:7581275-7581294 Msa1231440:intron 40.0%
! GACCACTTTCAAGTGATACT+TGG + chr8_2:7581465-7581484 None:intergenic 40.0%
TCTTTGGGCAGATTTCTTGT+TGG - chr8_2:7581541-7581560 Msa1231440:intron 40.0%
CTTTGGGCAGATTTCTTGTT+GGG - chr8_2:7581542-7581561 Msa1231440:intron 40.0%
TTTGGGCAGATTTCTTGTTG+GGG - chr8_2:7581543-7581562 Msa1231440:intron 40.0%
TCATTGCTGCAACTACTCAT+TGG - chr8_2:7581589-7581608 Msa1231440:intron 40.0%
TTGGCACGTCAAGATTTCTT+AGG - chr8_2:7581608-7581627 Msa1231440:intron 40.0%
TGGCACGTCAAGATTTCTTA+GGG - chr8_2:7581609-7581628 Msa1231440:intron 40.0%
!!! CATGCATGGGTTATTTTTGC+TGG - chr8_2:7581658-7581677 Msa1231440:intron 40.0%
!!! TGCATGGGTTATTTTTGCTG+GGG - chr8_2:7581660-7581679 Msa1231440:intron 40.0%
TCTTGGCATCACTGATGTAT+AGG - chr8_2:7581869-7581888 Msa1231440:intron 40.0%
GTAACCAATCTAAATCGCAC+TGG - chr8_2:7582593-7582612 Msa1231440:CDS 40.0%
GGCTTGCAAAAATTTGGAAG+AGG + chr8_2:7582632-7582651 None:intergenic 40.0%
CTGCTGTGCATGATGTTATA+TGG - chr8_2:7582726-7582745 Msa1231440:CDS 40.0%
CTACCTTGTAGTCAATGTTC+TGG - chr8_2:7582821-7582840 Msa1231440:exon 40.0%
! AAGCCAGAACATTGACTACA+AGG + chr8_2:7582827-7582846 None:intergenic 40.0%
GTATGAAAGGGTGAGTTAGG+AGG + chr8_2:7579141-7579160 None:intergenic 45.0%
ATAGCTCCTCCAAGAGATCA+TGG - chr8_2:7579215-7579234 Msa1231440:three_prime_UTR 45.0%
! TGTTAGCTCTTAGGGTTGTG+TGG - chr8_2:7580209-7580228 Msa1231440:intron 45.0%
!! GCCATGGTCTGCACTTTTTA+TGG + chr8_2:7580265-7580284 None:intergenic 45.0%
! TGACTTTTCACACAACGCCA+TGG + chr8_2:7580281-7580300 None:intergenic 45.0%
!! CGAACTTGTTTGGCGTGTTT+TGG - chr8_2:7580467-7580486 Msa1231440:CDS 45.0%
!! ACCGTTTTGAGTAGGTCCTA+TGG - chr8_2:7580942-7580961 Msa1231440:intron 45.0%
GAGTAGTTGCAGCAATGAGT+GGG + chr8_2:7581587-7581606 None:intergenic 45.0%
TGAGTAGTTGCAGCAATGAG+TGG + chr8_2:7581588-7581607 None:intergenic 45.0%
!!! GGTTATTTTTGCTGGGGATC+AGG - chr8_2:7581666-7581685 Msa1231440:intron 45.0%
! AGCTCGAGTTCTTTTCTTGG+TGG + chr8_2:7581845-7581864 None:intergenic 45.0%
! TCGAGCTCGAGTTCTTTTCT+TGG + chr8_2:7581848-7581867 None:intergenic 45.0%
AAGAACTCGAGCTCGATTCT+TGG - chr8_2:7581852-7581871 Msa1231440:intron 45.0%
! GCTTATGCATTGATGAGTGC+TGG - chr8_2:7582554-7582573 Msa1231440:intron 45.0%
AGGCTATTGAGATGGCAACA+TGG + chr8_2:7582673-7582692 None:intergenic 45.0%
AACATCATGCACAGCAGATG+TGG + chr8_2:7582723-7582742 None:intergenic 45.0%
!!! TTTTATTTTTTTTAAAATTG+TGG - chr8_2:7579834-7579853 Msa1231440:intron 5.0%
!! TTAAAAAAAAAAAAGTTAAA+TGG - chr8_2:7580000-7580019 Msa1231440:intron 5.0%
!!! AAAAAAAAAAAAGTTTTTTT+AGG - chr8_2:7580123-7580142 Msa1231440:intron 5.0%
!!! AAAAAAAAAAAGTTTTTTTA+GGG - chr8_2:7580124-7580143 Msa1231440:intron 5.0%
AAGGGTGAGTTAGGAGGTGA+CGG + chr8_2:7579135-7579154 None:intergenic 50.0%
CACTCACCATGATCTCTTGG+AGG + chr8_2:7579224-7579243 None:intergenic 50.0%
GCTCACTCACCATGATCTCT+TGG + chr8_2:7579227-7579246 None:intergenic 50.0%
!! ACAGCAGCTTTAGAGTGCAG+TGG - chr8_2:7579252-7579271 Msa1231440:three_prime_UTR 50.0%
AGAATGAGTGGTCCTCTCGT+CGG - chr8_2:7579282-7579301 Msa1231440:three_prime_UTR 50.0%
GGTGACCGAAAAGAGGTTCA+TGG - chr8_2:7579800-7579819 Msa1231440:intron 50.0%
AAAGGGCTACCGTTAGGCAT+TGG - chr8_2:7580559-7580578 Msa1231440:intron 50.0%
!! CAGCAATGAGTGGGCTGCAA+CGG + chr8_2:7581578-7581597 None:intergenic 55.0%
! AGTGCTGGATCAGCTGCATC+TGG - chr8_2:7582569-7582588 Msa1231440:intron 55.0%
! GGTGAGTTAGGAGGTGACGG+TGG + chr8_2:7579132-7579151 None:intergenic 60.0%
AGTGGTCCTCTCGTCGGAGA+CGG - chr8_2:7579288-7579307 Msa1231440:exon 60.0%
! TTTTCGCCGTCTCCGACGAG+AGG + chr8_2:7579297-7579316 None:intergenic 60.0%
GCGAAAAGACCAGTCGACGC+CGG - chr8_2:7579310-7579329 Msa1231440:CDS 60.0%
GCAGCATCACCTCCGTTCTC+CGG + chr8_2:7579332-7579351 None:intergenic 60.0%
GACCAGTCGACGCCGGAGAA+CGG - chr8_2:7579317-7579336 Msa1231440:CDS 65.0%
!! CTCCGTTCTCCGGCGTCGAC+TGG + chr8_2:7579322-7579341 None:intergenic 70.0%
CAGTCGACGCCGGAGAACGG+AGG - chr8_2:7579320-7579339 Msa1231440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 7579108 7582957 7579108 ID=Msa1231440;Name=Msa1231440
chr8_2 mRNA 7579108 7582957 7579108 ID=Msa1231440-mRNA-1;Parent=Msa1231440;Name=Msa1231440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=126|1|1|1|1|1|3|194|202
chr8_2 exon 7579108 7579517 7579108 ID=Msa1231440-mRNA-1:exon:2841;Parent=Msa1231440-mRNA-1
chr8_2 exon 7580378 7580513 7580378 ID=Msa1231440-mRNA-1:exon:2840;Parent=Msa1231440-mRNA-1
chr8_2 exon 7582575 7582957 7582575 ID=Msa1231440-mRNA-1:exon:2839;Parent=Msa1231440-mRNA-1
chr8_2 five_prime_UTR 7582832 7582957 7582832 ID=Msa1231440-mRNA-1:five_prime_utr;Parent=Msa1231440-mRNA-1
chr8_2 CDS 7582575 7582831 7582575 ID=Msa1231440-mRNA-1:cds;Parent=Msa1231440-mRNA-1
chr8_2 CDS 7580378 7580513 7580378 ID=Msa1231440-mRNA-1:cds;Parent=Msa1231440-mRNA-1
chr8_2 CDS 7579302 7579517 7579302 ID=Msa1231440-mRNA-1:cds;Parent=Msa1231440-mRNA-1
chr8_2 three_prime_UTR 7579108 7579301 7579108 ID=Msa1231440-mRNA-1:three_prime_utr;Parent=Msa1231440-mRNA-1
Gene Sequence

>Msa1231440

ATGGTGAGTGAGCAAAAAACAGCAGCTTTAGAGTGCAGTGGATCAACTAGAATGAGTGGTCCTCTCGTCGGAGACGGCGAAAAGACCAGTCGACGCCGGAGAACGGAGGTGATGCTGCTGATTCTTCGAGCTTTATGTATGGGAAGTTCAGTTGTTTCTTTGTCACTAATGATCACAGCTAAACAAAGCAGTTCTGTCTCTATCTATGGCTTTCACTTACCTGTTCATTCTAAGTGGACTTTCTCTCCTTCATATGAATTTCTTGTTGGGGTTTCTGTAGCCGTTGCAGCCCACTCATTGCTGCAACTACTCATTGGCACGTCAAGATTTCTTAGGGCTTCTTCTGTGATTTCTTCTAGAAAGCATGCATGGGTTATTTTTGCTGGGGATCAGGCATTTGCTTATGCATTGATGAGTGCTGGATCAGCTGCATCTGGAGTAACCAATCTAAATCGCACTGGAATTAGACATACACCTCTTCCAAATTTTTGCAAGCCTTTGCACAAATTTTGTGACCATGTTGCCATCTCAATAGCCTTCAATTTCATCAGCTGTTTTTTGCTTGCCACATCTGCTGTGCATGATGTTATATGGCTCTCACAACACTGA

Protein sequence

>Msa1231440

MVSEQKTAALECSGSTRMSGPLVGDGEKTSRRRRTEVMLLILRALCMGSSVVSLSLMITAKQSSSVSIYGFHLPVHSKWTFSPSYEFLVGVSVAVAAHSLLQLLIGTSRFLRASSVISSRKHAWVIFAGDQAFAYALMSAGSAASGVTNLNRTGIRHTPLPNFCKPLHKFCDHVAISIAFNFISCFLLATSAVHDVIWLSQH*