AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0758000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758000 MtrunA17_Chr5g0404551 97.685 216 2 1 1 216 1 213 1.03e-155 429
Msa0758000 MtrunA17_Chr8g0372981 75.109 229 41 3 1 216 1 226 2.34e-124 351
Msa0758000 MtrunA17_Chr8g0345781 75.234 214 50 1 3 216 7 217 1.18e-122 346
Msa0758000 MtrunA17_Chr1g0182331 81.000 200 35 1 17 216 20 216 1.54e-122 346
Msa0758000 MtrunA17_Chr1g0200691 65.948 232 37 2 11 203 57 285 1.23e-105 305
Msa0758000 MtrunA17_Chr7g0276441 78.571 168 33 1 49 216 29 193 2.92e-96 278
Msa0758000 MtrunA17_Chr1g0210921 67.391 46 15 0 132 177 12 57 8.80e-16 70.9
Msa0758000 MtrunA17_Chr2g0280151 32.075 159 85 5 36 172 82 239 4.95e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758000 AT1G01050.1 81.500 200 34 1 17 216 16 212 1.31e-124 351
Msa0758000 AT1G01050.2 81.500 200 34 1 17 216 16 212 1.31e-124 351
Msa0758000 AT3G53620.1 81.500 200 34 1 17 216 20 216 7.41e-124 349
Msa0758000 AT2G46860.1 81.500 200 34 1 17 216 20 216 3.63e-122 345
Msa0758000 AT2G18230.1 80.808 198 35 1 19 216 24 218 1.15e-119 339
Msa0758000 AT4G01480.1 78.000 200 41 1 17 216 20 216 6.60e-118 334
Msa0758000 AT4G01480.2 78.000 200 41 1 17 216 20 216 6.60e-118 334
Msa0758000 AT5G09650.1 32.353 170 91 6 36 182 92 260 1.23e-14 71.6

Find 78 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGCAGGTGATTGAAAT+TGG 0.190283 5_2:+13060072 Msa0758000:intron
GAAATATACGACCGAATATT+TGG 0.221040 5_2:+13057973 Msa0758000:five_prime_UTR
TTCCTCCGTGCTCGTGCTAT+TGG 0.259844 5_2:+13060918 Msa0758000:CDS
TCTGTATAATGGCGGAATTC+AGG 0.260442 5_2:-13061518 None:intergenic
CTTACATAGTTGAGAGCTTA+AGG 0.321086 5_2:+13062259 Msa0758000:CDS
AAATATTCGGTCGTATATTT+CGG 0.327462 5_2:-13057971 None:intergenic
CAGTGATCCTATGGATGTTC+TGG 0.337131 5_2:+13060757 Msa0758000:CDS
CTTGCGCTTGTGCCAGATAC+AGG 0.352511 5_2:-13062408 None:intergenic
CACTTGTGCTACCCTGTATC+TGG 0.364204 5_2:+13062396 Msa0758000:three_prime_UTR
CAAGACAAGTGGACTTATAA+AGG 0.377557 5_2:+13060125 Msa0758000:CDS
AGTATTCTTTCATTGAGCTT+AGG 0.377855 5_2:-13059199 None:intergenic
GTATTCTTTCATTGAGCTTA+GGG 0.385169 5_2:-13059198 None:intergenic
GCTCTTTGATGTCTGTATAA+TGG 0.387260 5_2:-13061529 None:intergenic
GAGAGTAGTGAGTCAGAGTT+TGG 0.402829 5_2:-13058119 None:intergenic
TGAAATTGGCAAAGGAAGTA+AGG 0.411821 5_2:+13060086 Msa0758000:CDS
GTAGGTATTGTTTGCGAAGT+TGG 0.417270 5_2:+13059127 Msa0758000:intron
CTGTATAATGGCGGAATTCA+GGG 0.428586 5_2:-13061517 None:intergenic
AATTTAGAGATCATTGCAAT+TGG 0.430450 5_2:-13062308 None:intergenic
CCTTGGCATGATGTAGAGAT+AGG 0.436662 5_2:+13059256 Msa0758000:CDS
TTGAAAACTGATGGAGCTCC+TGG 0.438536 5_2:-13059783 None:intergenic
TGAAATAAGAAGATTCTTTG+AGG 0.445984 5_2:+13061571 Msa0758000:CDS
GGATGTTCTGGTTCTGATGC+AGG 0.447786 5_2:+13060769 Msa0758000:CDS
CTCATTCTTCTTGTCTAGTG+TGG 0.449563 5_2:-13062007 None:intergenic
TTTGATCGGACGGTTGTGAA+TGG 0.463827 5_2:-13058010 None:intergenic
TGTGAGGTATACCAAATATT+CGG 0.466885 5_2:-13057984 None:intergenic
AGCTCACATGGAATACTTGA+TGG 0.473951 5_2:-13062082 None:intergenic
AGGATCACTGTCTTCACAAA+TGG 0.475465 5_2:-13060744 None:intergenic
AGGAAGGTGCCGGGTAGCAC+AGG 0.496025 5_2:-13060900 None:intergenic
GAACTGTTGCTGCTCACCCT+TGG 0.496264 5_2:+13059239 Msa0758000:CDS
TATTGTTTGCGAAGTTGGTA+TGG 0.496836 5_2:+13059132 Msa0758000:exon
ACGAGCACGGAGGAAGGTGC+CGG 0.501988 5_2:-13060910 None:intergenic
TGATCGTATTCTTTACTCAT+CGG 0.503153 5_2:+13060685 Msa0758000:CDS
GACACGGTCTCAGTGATGTT+AGG 0.514961 5_2:-13057949 None:intergenic
TTGTGAAGACAGTGATCCTA+TGG 0.514972 5_2:+13060748 Msa0758000:CDS
CTTACACAGTTGAAAACTGA+TGG 0.520205 5_2:-13059792 None:intergenic
AGAGTTTGGCGATGGCGACT+AGG 0.529256 5_2:-13058105 None:intergenic
AAGTAAGGTTAAGTATGAGC+TGG 0.529577 5_2:+13060101 Msa0758000:CDS
ATCATGACGGATCAAATGAA+TGG 0.532018 5_2:+13059158 Msa0758000:CDS
GCATCAACGGCAGACTCAGC+TGG 0.536658 5_2:-13062060 None:intergenic
TTTGTAGTGGAAGGAAGTAT+AGG 0.537651 5_2:+13057914 None:intergenic
CTGTCTTCACAAATGGTTCG+TGG 0.541096 5_2:-13060737 None:intergenic
GGAATACTTGATGGCATCAA+CGG 0.543163 5_2:-13062073 None:intergenic
GAGTTTGGCGATGGCGACTA+GGG 0.547374 5_2:-13058104 None:intergenic
GGGATAAAACCGTAGTTGTG+TGG 0.550580 5_2:-13060716 None:intergenic
CGAGCACGGAGGAAGGTGCC+GGG 0.550719 5_2:-13060909 None:intergenic
CCTATCTCTACATCATGCCA+AGG 0.552129 5_2:-13059256 None:intergenic
GAGCAGGAGCCTGTGCTACC+CGG 0.553776 5_2:+13060891 Msa0758000:intron
AGAGCTTCCTCCACATCGGT+TGG 0.560428 5_2:+13061547 Msa0758000:CDS
GTAGCACAAGTGCCATAAAA+CGG 0.564807 5_2:-13062385 None:intergenic
ACTTCTACCTGGTCAATCAT+CGG 0.565683 5_2:-13060948 None:intergenic
GTTGTCTACCCACACAACTA+CGG 0.573385 5_2:+13060707 Msa0758000:CDS
AATTGTGGTGCAGGGTGAGA+GGG 0.573996 5_2:+13061463 Msa0758000:intron
AATAGCACGAGCACGGAGGA+AGG 0.581178 5_2:-13060916 None:intergenic
GGATAAAACCGTAGTTGTGT+GGG 0.585743 5_2:-13060715 None:intergenic
GAATACTCTCTTCAATGTCA+CGG 0.588678 5_2:+13059215 Msa0758000:CDS
TGTCTTCACAAATGGTTCGT+GGG 0.601852 5_2:-13060736 None:intergenic
ATTTCAGCCAACCGATGTGG+AGG 0.601981 5_2:-13061554 None:intergenic
CTTATTTCAGCCAACCGATG+TGG 0.603146 5_2:-13061557 None:intergenic
ACTAATGCCGATGATTGACC+AGG 0.611236 5_2:+13060941 Msa0758000:CDS
GAATTGTGGTGCAGGGTGAG+AGG 0.616336 5_2:+13061462 Msa0758000:intron
TTGCGCTTGTGCCAGATACA+GGG 0.617127 5_2:-13062407 None:intergenic
AAAGAAATGACTTACAGAGT+GGG 0.619451 5_2:-13058147 None:intergenic
CGACTAGGGAAGAAGAAACA+AGG 0.631722 5_2:-13058090 None:intergenic
AGTGAGTCAGAGTTTGGCGA+TGG 0.633715 5_2:-13058113 None:intergenic
TTAGTCCAATAGCACGAGCA+CGG 0.634148 5_2:-13060923 None:intergenic
CAACTATGTAAGAAGCATAG+AGG 0.643329 5_2:-13062248 None:intergenic
TATGAGCTGGACAAGACAAG+TGG 0.645481 5_2:+13060114 Msa0758000:CDS
GTTGGTATGGCTAATCATGA+CGG 0.647306 5_2:+13059145 Msa0758000:exon
TCAAAGAGCTTCCTCCACAT+CGG 0.652320 5_2:+13061543 Msa0758000:CDS
CTTTGATGTCTGTATAATGG+CGG 0.654127 5_2:-13061526 None:intergenic
ATCAGAACCAGAACATCCAT+AGG 0.655108 5_2:-13060764 None:intergenic
CAGGTGATTGAAATTGGCAA+AGG 0.656011 5_2:+13060078 Msa0758000:intron
CTATCTCTACATCATGCCAA+GGG 0.666160 5_2:-13059255 None:intergenic
ACAAGGACTTAGATCAGCGG+CGG 0.687970 5_2:-13058073 None:intergenic
GAAACAAGGACTTAGATCAG+CGG 0.723420 5_2:-13058076 None:intergenic
TCGGTCGTATATTTCGGACA+CGG 0.733079 5_2:-13057965 None:intergenic
CGGTTGTGAATGGAGATGTG+AGG 0.754829 5_2:-13058000 None:intergenic
GTCCAATAGCACGAGCACGG+AGG 0.771614 5_2:-13060920 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAATTTGACATAAA+CGG - chr5_2:13058472-13058491 None:intergenic 10.0%
!!! AATTATTTTTTTGATAAACA+CGG - chr5_2:13058723-13058742 None:intergenic 10.0%
!!! ATATAATTTTTTTTAAATGC+AGG + chr5_2:13059759-13059778 Msa0758000:intron 10.0%
!!! TATAATTTTTTTTAAATGCA+GGG + chr5_2:13059760-13059779 Msa0758000:intron 10.0%
!!! TTTAATTCAGTTAAAAATTT+TGG - chr5_2:13060850-13060869 None:intergenic 10.0%
!!! TTTTTAACTGAATTAAAAAT+TGG + chr5_2:13060853-13060872 Msa0758000:intron 10.0%
!! AAATAATTAAAATAGCTATT+GGG - chr5_2:13061057-13061076 None:intergenic 10.0%
!! TAAATAATTAAAATAGCTAT+TGG - chr5_2:13061058-13061077 None:intergenic 10.0%
!!! ACAAATTTAAAAACTACTTT+TGG + chr5_2:13058322-13058341 Msa0758000:intron 15.0%
!! ATATAAAAAAAAGTAATCTC+AGG - chr5_2:13058437-13058456 None:intergenic 15.0%
!! AAAATTAACTAGCAAAATAT+CGG - chr5_2:13058983-13059002 None:intergenic 15.0%
!! TAAAAAAAAGAAAGATGAAA+TGG + chr5_2:13059008-13059027 Msa0758000:intron 15.0%
!! ATACAAACAAAATAGAATAT+GGG - chr5_2:13059637-13059656 None:intergenic 15.0%
!! AATACAAACAAAATAGAATA+TGG - chr5_2:13059638-13059657 None:intergenic 15.0%
!! AAACTATTTATAATGAATTG+TGG + chr5_2:13061448-13061467 Msa0758000:intron 15.0%
!! AAATTATCATTGAAAAATAG+GGG - chr5_2:13061885-13061904 None:intergenic 15.0%
!! GAAATTATCATTGAAAAATA+GGG - chr5_2:13061886-13061905 None:intergenic 15.0%
!! AGAAATTATCATTGAAAAAT+AGG - chr5_2:13061887-13061906 None:intergenic 15.0%
!! ATGATGAAAAAACTATGTAT+TGG - chr5_2:13058181-13058200 None:intergenic 20.0%
!!! ATACATAGTTTTTTCATCAT+TGG + chr5_2:13058181-13058200 Msa0758000:intron 20.0%
!! AAAAAATAAGTCAATCCAAT+CGG + chr5_2:13058689-13058708 Msa0758000:intron 20.0%
!! ATGTATTCTTTACAAATTCA+TGG + chr5_2:13058851-13058870 Msa0758000:intron 20.0%
!!! TGAATTGATAATATGTTGAT+TGG + chr5_2:13058915-13058934 Msa0758000:intron 20.0%
!! ACATAAATACATAATAGAAG+AGG - chr5_2:13059090-13059109 None:intergenic 20.0%
!! TTCTATTATGTATTTATGTG+AGG + chr5_2:13059091-13059110 Msa0758000:intron 20.0%
!! AATTATTTGAGCTTATTTAC+TGG - chr5_2:13059598-13059617 None:intergenic 20.0%
!! TGATTAAAAGATATAGATGT+AGG + chr5_2:13059713-13059732 Msa0758000:intron 20.0%
!! TTCACTTAGAAAATATGAAT+AGG - chr5_2:13060040-13060059 None:intergenic 20.0%
!! ATAATACAATGGTCTATTAA+CGG - chr5_2:13060322-13060341 None:intergenic 20.0%
!! AATATCAAAAAACATGTGTT+TGG - chr5_2:13060471-13060490 None:intergenic 20.0%
!! ATTATTATCTATGAATAGCA+AGG - chr5_2:13060586-13060605 None:intergenic 20.0%
!! AATAAAATACAAAGACAAGT+AGG - chr5_2:13060979-13060998 None:intergenic 20.0%
!!! TCTTTGTATTTTATTCTGTT+TGG + chr5_2:13060984-13061003 Msa0758000:intron 20.0%
!!! CTTTGTATTTTATTCTGTTT+GGG + chr5_2:13060985-13061004 Msa0758000:intron 20.0%
!!! TTTGTATTTTATTCTGTTTG+GGG + chr5_2:13060986-13061005 Msa0758000:intron 20.0%
!! CACTAATTAAAATAGAACTA+TGG - chr5_2:13061225-13061244 None:intergenic 20.0%
!!! TAGTTCTATTTTAATTAGTG+AGG + chr5_2:13061225-13061244 Msa0758000:intron 20.0%
!!! TTTTTATTTGATCCTTCTAA+CGG - chr5_2:13061318-13061337 None:intergenic 20.0%
!! ATAAACTAAATGCAAATAAC+AGG - chr5_2:13061604-13061623 None:intergenic 20.0%
!!! TGTTATTTGCATTTAGTTTA+TGG + chr5_2:13061603-13061622 Msa0758000:intron 20.0%
!!! ACATGAATATTTTCATTTTC+AGG + chr5_2:13062223-13062242 Msa0758000:intron 20.0%
!!! CATGAATATTTTCATTTTCA+GGG + chr5_2:13062224-13062243 Msa0758000:intron 20.0%
! AAATATTCGGTCGTATATTT+CGG - chr5_2:13057974-13057993 None:intergenic 25.0%
!! GATTAAACCAGATTTTTGAT+CGG - chr5_2:13058027-13058046 None:intergenic 25.0%
! GAAAAAACTATGTATTGGAA+TGG - chr5_2:13058176-13058195 None:intergenic 25.0%
! CACTATAATTTCCATTGTTT+CGG + chr5_2:13058212-13058231 Msa0758000:intron 25.0%
!! AAAAAATAGTACCGAAACAA+TGG - chr5_2:13058226-13058245 None:intergenic 25.0%
! GCTTAAGTTAAAAAATAAGC+CGG - chr5_2:13058532-13058551 None:intergenic 25.0%
! TTTAACTGCAATATATACTG+TGG + chr5_2:13059048-13059067 Msa0758000:intron 25.0%
! AGTTATAATGAATTTGAGCA+TGG + chr5_2:13059319-13059338 Msa0758000:intron 25.0%
!!! GCTGTTTTAATAAGCTATTT+TGG + chr5_2:13059481-13059500 Msa0758000:intron 25.0%
! AAAATGTTAGAGAATTTCCT+TGG + chr5_2:13059846-13059865 Msa0758000:intron 25.0%
!!! AGCTTATGTTGATTTATTTC+TGG + chr5_2:13059919-13059938 Msa0758000:intron 25.0%
! GTGAAATAAATGTATTTCCA+TGG + chr5_2:13060055-13060074 Msa0758000:intron 25.0%
!!! TTTTTTCCTAAAGAACATGT+AGG - chr5_2:13060186-13060205 None:intergenic 25.0%
! CTATTTCATAATCATGATCA+TGG - chr5_2:13060212-13060231 None:intergenic 25.0%
! GAAAAAAAATTGTTATGAGC+AGG + chr5_2:13060875-13060894 Msa0758000:intron 25.0%
! TTAAAAAAATCATGGCTAAG+TGG + chr5_2:13061114-13061133 Msa0758000:intron 25.0%
! AAAACCAAATGACAGATAAA+AGG - chr5_2:13061369-13061388 None:intergenic 25.0%
! AAATGTCTACTTTGATTAGT+TGG - chr5_2:13061421-13061440 None:intergenic 25.0%
! TGAAATAAGAAGATTCTTTG+AGG + chr5_2:13061571-13061590 Msa0758000:CDS 25.0%
! CTAGATTTGTAGTATGAAAA+AGG - chr5_2:13062131-13062150 None:intergenic 25.0%
!!! TCATACTACAAATCTAGTTT+TGG + chr5_2:13062134-13062153 Msa0758000:intron 25.0%
! AGTAAAATCGTTGAAGATTA+AGG - chr5_2:13062168-13062187 None:intergenic 25.0%
! AATTTAGAGATCATTGCAAT+TGG - chr5_2:13062311-13062330 None:intergenic 25.0%
GAAATATACGACCGAATATT+TGG + chr5_2:13057973-13057992 Msa0758000:five_prime_UTR 30.0%
TGTGAGGTATACCAAATATT+CGG - chr5_2:13057987-13058006 None:intergenic 30.0%
AAAGAAATGACTTACAGAGT+GGG - chr5_2:13058150-13058169 None:intergenic 30.0%
AAAAGAAATGACTTACAGAG+TGG - chr5_2:13058151-13058170 None:intergenic 30.0%
AAGTAATTCACAACGAGTAA+GGG - chr5_2:13058394-13058413 None:intergenic 30.0%
AAAGTAATTCACAACGAGTA+AGG - chr5_2:13058395-13058414 None:intergenic 30.0%
TTACTCGTTGTGAATTACTT+TGG + chr5_2:13058394-13058413 Msa0758000:intron 30.0%
TCTACTGCTACATCTAATTA+AGG + chr5_2:13058495-13058514 Msa0758000:intron 30.0%
CTACTGCTACATCTAATTAA+GGG + chr5_2:13058496-13058515 Msa0758000:intron 30.0%
! AAAAAATAAGCCGGTTCAAA+CGG - chr5_2:13058523-13058542 None:intergenic 30.0%
! TGAAGATACAGTTTTCGTTA+TGG + chr5_2:13058616-13058635 Msa0758000:intron 30.0%
! TTTTTGATAAACACGGCTTA+GGG - chr5_2:13058716-13058735 None:intergenic 30.0%
!!! TTTTTTGATAAACACGGCTT+AGG - chr5_2:13058717-13058736 None:intergenic 30.0%
GTATTCTTTCATTGAGCTTA+GGG - chr5_2:13059201-13059220 None:intergenic 30.0%
AGTATTCTTTCATTGAGCTT+AGG - chr5_2:13059202-13059221 None:intergenic 30.0%
TCAACATAAGCTCCATAATT+TGG - chr5_2:13059911-13059930 None:intergenic 30.0%
GCAACTTATCAAACATAACA+TGG + chr5_2:13059941-13059960 Msa0758000:intron 30.0%
TTTGGTGGAATAATCTATCT+AGG - chr5_2:13060008-13060027 None:intergenic 30.0%
ATGAATAGGAAACAAGAGTT+TGG - chr5_2:13060026-13060045 None:intergenic 30.0%
AATAAATGTATTTCCATGGC+AGG + chr5_2:13060059-13060078 Msa0758000:intron 30.0%
AAAGTAGAGAATAGGGAATA+GGG - chr5_2:13060158-13060177 None:intergenic 30.0%
TAAAGTAGAGAATAGGGAAT+AGG - chr5_2:13060159-13060178 None:intergenic 30.0%
! GGAGTTTAAAGTAGAGAATA+GGG - chr5_2:13060165-13060184 None:intergenic 30.0%
! AGGAGTTTAAAGTAGAGAAT+AGG - chr5_2:13060166-13060185 None:intergenic 30.0%
TAAACTCCTACATGTTCTTT+AGG + chr5_2:13060177-13060196 Msa0758000:intron 30.0%
! TTGATATCATCTGACGTTTT+AGG - chr5_2:13060292-13060311 None:intergenic 30.0%
GGCATAATTTGATATTCAAG+TGG + chr5_2:13060375-13060394 Msa0758000:intron 30.0%
AGTTATAGCACTCATATCAT+CGG - chr5_2:13060444-13060463 None:intergenic 30.0%
AATCCATCATTGAGTATTCA+AGG - chr5_2:13060515-13060534 None:intergenic 30.0%
ATTGCATGTTATTGTGCTTT+AGG + chr5_2:13060538-13060557 Msa0758000:intron 30.0%
TAAAGAATACGATCAACCTA+AGG - chr5_2:13060680-13060699 None:intergenic 30.0%
TGATCGTATTCTTTACTCAT+CGG + chr5_2:13060685-13060704 Msa0758000:CDS 30.0%
! TTTTGGATAAAAGTGAAAGC+AGG - chr5_2:13060833-13060852 None:intergenic 30.0%
AAAATACAAAGACAAGTAGG+AGG - chr5_2:13060976-13060995 None:intergenic 30.0%
! TGTTTTATCGTTTCAGTCAT+GGG - chr5_2:13061144-13061163 None:intergenic 30.0%
! ATGTTTTATCGTTTCAGTCA+TGG - chr5_2:13061145-13061164 None:intergenic 30.0%
ACCATGTTATATCACATACA+GGG - chr5_2:13061175-13061194 None:intergenic 30.0%
! ATGATTGAGCATGCAATTTT+TGG + chr5_2:13061256-13061275 Msa0758000:intron 30.0%
!! AAGGAAACTTGTTATGTATG+CGG + chr5_2:13061287-13061306 Msa0758000:intron 30.0%
TTTATAATGAATTGTGGTGC+AGG + chr5_2:13061454-13061473 Msa0758000:intron 30.0%
TTATAATGAATTGTGGTGCA+GGG + chr5_2:13061455-13061474 Msa0758000:intron 30.0%
ATCCTTGTAACAAATGTACT+TGG + chr5_2:13061626-13061645 Msa0758000:intron 30.0%
TCCTTGTAACAAATGTACTT+GGG + chr5_2:13061627-13061646 Msa0758000:intron 30.0%
!! TTTACCCATGATTGATTTTC+AGG + chr5_2:13061842-13061861 Msa0758000:intron 30.0%
TCAACCTGAAAATCAATCAT+GGG - chr5_2:13061849-13061868 None:intergenic 30.0%
TTCAACCTGAAAATCAATCA+TGG - chr5_2:13061850-13061869 None:intergenic 30.0%
GATTTGTAGTATGAAAAAGG+TGG - chr5_2:13062128-13062147 None:intergenic 30.0%
!! AACGATTTTACTTTTCCCTT+GGG + chr5_2:13062176-13062195 Msa0758000:intron 30.0%
GATAAAATAATCATCCCCAA+GGG - chr5_2:13062194-13062213 None:intergenic 30.0%
TGATAAAATAATCATCCCCA+AGG - chr5_2:13062195-13062214 None:intergenic 30.0%
! ATTTCTGTATCACCGTTTTA+TGG + chr5_2:13062373-13062392 Msa0758000:three_prime_UTR 30.0%
! AAACCAGATTTTTGATCGGA+CGG - chr5_2:13058023-13058042 None:intergenic 35.0%
AGTAATTCACAACGAGTAAG+GGG - chr5_2:13058393-13058412 None:intergenic 35.0%
! TGAGGTTTTTATGCTCTTGT+AGG + chr5_2:13059109-13059128 Msa0758000:intron 35.0%
!! TATTGTTTGCGAAGTTGGTA+TGG + chr5_2:13059132-13059151 Msa0758000:exon 35.0%
!! ATCATGACGGATCAAATGAA+TGG + chr5_2:13059158-13059177 Msa0758000:CDS 35.0%
GAATACTCTCTTCAATGTCA+CGG + chr5_2:13059215-13059234 Msa0758000:CDS 35.0%
!!! ACCTTGCGGATGTTTTTTTT+CGG + chr5_2:13059285-13059304 Msa0758000:intron 35.0%
! TAAGCTTTGTGAGGCTATTT+GGG - chr5_2:13059572-13059591 None:intergenic 35.0%
! ATAAGCTTTGTGAGGCTATT+TGG - chr5_2:13059573-13059592 None:intergenic 35.0%
AAATAGCCTCACAAAGCTTA+TGG + chr5_2:13059572-13059591 Msa0758000:intron 35.0%
AAATAGAATATGGGCGAGTT+TGG - chr5_2:13059628-13059647 None:intergenic 35.0%
!!! TTTTTTTTAAATGCAGGGCC+AGG + chr5_2:13059765-13059784 Msa0758000:intron 35.0%
CTTACACAGTTGAAAACTGA+TGG - chr5_2:13059795-13059814 None:intergenic 35.0%
TGGAAGTAACATTTCTTCCA+AGG - chr5_2:13059866-13059885 None:intergenic 35.0%
AATAGGAAACAAGAGTTTGG+TGG - chr5_2:13060023-13060042 None:intergenic 35.0%
TGAAATTGGCAAAGGAAGTA+AGG + chr5_2:13060086-13060105 Msa0758000:CDS 35.0%
AAGTAAGGTTAAGTATGAGC+TGG + chr5_2:13060101-13060120 Msa0758000:CDS 35.0%
! CAAGACAAGTGGACTTATAA+AGG + chr5_2:13060125-13060144 Msa0758000:CDS 35.0%
GTTACACAACTCCACAAAAT+CGG - chr5_2:13060270-13060289 None:intergenic 35.0%
! ACAATGGTCTATTAACGGAT+AGG - chr5_2:13060317-13060336 None:intergenic 35.0%
CCCTTTCATCCTTAACTATT+GGG - chr5_2:13060357-13060376 None:intergenic 35.0%
CCCAATAGTTAAGGATGAAA+GGG + chr5_2:13060354-13060373 Msa0758000:intron 35.0%
CATCCTTGAATACTCAATGA+TGG + chr5_2:13060509-13060528 Msa0758000:intron 35.0%
AAATGAAAAAGAGCTGTGTG+AGG + chr5_2:13061009-13061028 Msa0758000:intron 35.0%
AATGAAAAAGAGCTGTGTGA+GGG + chr5_2:13061010-13061029 Msa0758000:intron 35.0%
ACCCTGTATGTGATATAACA+TGG + chr5_2:13061171-13061190 Msa0758000:intron 35.0%
CACCATGTTATATCACATAC+AGG - chr5_2:13061176-13061195 None:intergenic 35.0%
!!! GCAATTTTTGGAGCAACAAA+AGG + chr5_2:13061268-13061287 Msa0758000:intron 35.0%
CCAAATGACAGATAAAAGGA+GGG - chr5_2:13061365-13061384 None:intergenic 35.0%
ACCAAATGACAGATAAAAGG+AGG - chr5_2:13061366-13061385 None:intergenic 35.0%
CTTTGATGTCTGTATAATGG+CGG - chr5_2:13061529-13061548 None:intergenic 35.0%
GCTCTTTGATGTCTGTATAA+TGG - chr5_2:13061532-13061551 None:intergenic 35.0%
CCTTGTAACAAATGTACTTG+GGG + chr5_2:13061628-13061647 Msa0758000:intron 35.0%
AATTCAAATGTGTGCACTCA+TGG - chr5_2:13061780-13061799 None:intergenic 35.0%
GAAAAGAGAAATAGCTCACA+TGG - chr5_2:13062097-13062116 None:intergenic 35.0%
TATGAAAAAGGTGGAGATCA+TGG - chr5_2:13062119-13062138 None:intergenic 35.0%
!! CAACGATTTTACTTTTCCCT+TGG + chr5_2:13062175-13062194 Msa0758000:intron 35.0%
!! ACGATTTTACTTTTCCCTTG+GGG + chr5_2:13062177-13062196 Msa0758000:intron 35.0%
! CAACTATGTAAGAAGCATAG+AGG - chr5_2:13062251-13062270 None:intergenic 35.0%
CTTACATAGTTGAGAGCTTA+AGG + chr5_2:13062259-13062278 Msa0758000:CDS 35.0%
GAAACAAGGACTTAGATCAG+CGG - chr5_2:13058079-13058098 None:intergenic 40.0%
ACGCGATTTCAATCTCATTC+AGG - chr5_2:13058286-13058305 None:intergenic 40.0%
AATTAAGGGTCCGTTTGAAC+CGG + chr5_2:13058510-13058529 Msa0758000:intron 40.0%
ACTAGCAAAATATCGGTGAG+TGG - chr5_2:13058976-13058995 None:intergenic 40.0%
! GTAGGTATTGTTTGCGAAGT+TGG + chr5_2:13059127-13059146 Msa0758000:intron 40.0%
GTTGGTATGGCTAATCATGA+CGG + chr5_2:13059145-13059164 Msa0758000:exon 40.0%
CTATCTCTACATCATGCCAA+GGG - chr5_2:13059258-13059277 None:intergenic 40.0%
GAGATAGGTATGAAACCTTG+CGG + chr5_2:13059271-13059290 Msa0758000:intron 40.0%
ACCGAAAAAAAACATCCGCA+AGG - chr5_2:13059289-13059308 None:intergenic 40.0%
! TGTTACTTCCAGCAGCATTA+AGG + chr5_2:13059875-13059894 Msa0758000:intron 40.0%
GTTACTTCCAGCAGCATTAA+GGG + chr5_2:13059876-13059895 Msa0758000:intron 40.0%
ATTCCAGATTGCTAGTGTCA+TGG - chr5_2:13059967-13059986 None:intergenic 40.0%
CAGGTGATTGAAATTGGCAA+AGG + chr5_2:13060078-13060097 Msa0758000:intron 40.0%
CAAAATCGGAAGGTAAGATG+AGG - chr5_2:13060256-13060275 None:intergenic 40.0%
! CATCTTACCTTCCGATTTTG+TGG + chr5_2:13060256-13060275 Msa0758000:intron 40.0%
TTCGTGCACGGATAATACAA+TGG - chr5_2:13060333-13060352 None:intergenic 40.0%
GCCCAATAGTTAAGGATGAA+AGG + chr5_2:13060353-13060372 Msa0758000:intron 40.0%
GCCCTTTCATCCTTAACTAT+TGG - chr5_2:13060358-13060377 None:intergenic 40.0%
ACCGAAGCATAACTAACTCA+TGG + chr5_2:13060646-13060665 Msa0758000:intron 40.0%
CCCATGAGTTAGTTATGCTT+CGG - chr5_2:13060650-13060669 None:intergenic 40.0%
CCGAAGCATAACTAACTCAT+GGG + chr5_2:13060647-13060666 Msa0758000:intron 40.0%
! ACTCATGGGCTAAATACCTT+AGG + chr5_2:13060661-13060680 Msa0758000:intron 40.0%
GGATAAAACCGTAGTTGTGT+GGG - chr5_2:13060718-13060737 None:intergenic 40.0%
TGTCTTCACAAATGGTTCGT+GGG - chr5_2:13060739-13060758 None:intergenic 40.0%
AGGATCACTGTCTTCACAAA+TGG - chr5_2:13060747-13060766 None:intergenic 40.0%
TTGTGAAGACAGTGATCCTA+TGG + chr5_2:13060748-13060767 Msa0758000:CDS 40.0%
ATCAGAACCAGAACATCCAT+AGG - chr5_2:13060767-13060786 None:intergenic 40.0%
ACTTCTACCTGGTCAATCAT+CGG - chr5_2:13060951-13060970 None:intergenic 40.0%
! CCCTCCTTTTATCTGTCATT+TGG + chr5_2:13061362-13061381 Msa0758000:intron 40.0%
! CTGTATAATGGCGGAATTCA+GGG - chr5_2:13061520-13061539 None:intergenic 40.0%
! TCTGTATAATGGCGGAATTC+AGG - chr5_2:13061521-13061540 None:intergenic 40.0%
! CCCCAAGTACATTTGTTACA+AGG - chr5_2:13061631-13061650 None:intergenic 40.0%
ATGCATCAAACTAGAGGATG+TGG - chr5_2:13061973-13061992 None:intergenic 40.0%
CTCATTCTTCTTGTCTAGTG+TGG - chr5_2:13062010-13062029 None:intergenic 40.0%
! GGAATACTTGATGGCATCAA+CGG - chr5_2:13062076-13062095 None:intergenic 40.0%
AGCTCACATGGAATACTTGA+TGG - chr5_2:13062085-13062104 None:intergenic 40.0%
GTAGCACAAGTGCCATAAAA+CGG - chr5_2:13062388-13062407 None:intergenic 40.0%
TCGGTCGTATATTTCGGACA+CGG - chr5_2:13057968-13057987 None:intergenic 45.0%
TTTGATCGGACGGTTGTGAA+TGG - chr5_2:13058013-13058032 None:intergenic 45.0%
CAACCGTCCGATCAAAAATC+TGG + chr5_2:13058017-13058036 Msa0758000:five_prime_UTR 45.0%
CGACTAGGGAAGAAGAAACA+AGG - chr5_2:13058093-13058112 None:intergenic 45.0%
GAGAGTAGTGAGTCAGAGTT+TGG - chr5_2:13058122-13058141 None:intergenic 45.0%
CCTATCTCTACATCATGCCA+AGG - chr5_2:13059259-13059278 None:intergenic 45.0%
CCTTGGCATGATGTAGAGAT+AGG + chr5_2:13059256-13059275 Msa0758000:CDS 45.0%
! TACTGGCCATAAGCTTTGTG+AGG - chr5_2:13059581-13059600 None:intergenic 45.0%
GAATATGGGCGAGTTTGGAT+TGG - chr5_2:13059623-13059642 None:intergenic 45.0%
TTGAAAACTGATGGAGCTCC+TGG - chr5_2:13059786-13059805 None:intergenic 45.0%
CCAATTTCAATCACCTGCCA+TGG - chr5_2:13060075-13060094 None:intergenic 45.0%
CCATGGCAGGTGATTGAAAT+TGG + chr5_2:13060072-13060091 Msa0758000:intron 45.0%
TATGAGCTGGACAAGACAAG+TGG + chr5_2:13060114-13060133 Msa0758000:CDS 45.0%
CACAACTCCACAAAATCGGA+AGG - chr5_2:13060266-13060285 None:intergenic 45.0%
TAACTATTGGGCTTCGTGCA+CGG - chr5_2:13060345-13060364 None:intergenic 45.0%
TGCACGAAGCCCAATAGTTA+AGG + chr5_2:13060345-13060364 Msa0758000:intron 45.0%
TCATCGGAAATGCATTGCGA+GGG - chr5_2:13060428-13060447 None:intergenic 45.0%
ATCATCGGAAATGCATTGCG+AGG - chr5_2:13060429-13060448 None:intergenic 45.0%
GTTGTCTACCCACACAACTA+CGG + chr5_2:13060707-13060726 Msa0758000:CDS 45.0%
GGGATAAAACCGTAGTTGTG+TGG - chr5_2:13060719-13060738 None:intergenic 45.0%
CTGTCTTCACAAATGGTTCG+TGG - chr5_2:13060740-13060759 None:intergenic 45.0%
CAGTGATCCTATGGATGTTC+TGG + chr5_2:13060757-13060776 Msa0758000:CDS 45.0%
TTAGTCCAATAGCACGAGCA+CGG - chr5_2:13060926-13060945 None:intergenic 45.0%
ACTAATGCCGATGATTGACC+AGG + chr5_2:13060941-13060960 Msa0758000:CDS 45.0%
TATGCGGTAACACCGTTAGA+AGG + chr5_2:13061303-13061322 Msa0758000:intron 45.0%
TCAAAGAGCTTCCTCCACAT+CGG + chr5_2:13061543-13061562 Msa0758000:CDS 45.0%
CTTATTTCAGCCAACCGATG+TGG - chr5_2:13061560-13061579 None:intergenic 45.0%
AACAAATGTACTTGGGGCAC+TGG + chr5_2:13061634-13061653 Msa0758000:intron 45.0%
ATGTGTGCACTCATGGCAAA+TGG - chr5_2:13061773-13061792 None:intergenic 45.0%
GGACACATGCATCAAACTAG+AGG - chr5_2:13061979-13061998 None:intergenic 45.0%
! TTGTCTAGTGTGGCTAGCTA+AGG - chr5_2:13062000-13062019 None:intergenic 45.0%
!! TTAATAAATTAAAAAAATCA+TGG + chr5_2:13061106-13061125 Msa0758000:intron 5.0%
GACACGGTCTCAGTGATGTT+AGG - chr5_2:13057952-13057971 None:intergenic 50.0%
CGGTTGTGAATGGAGATGTG+AGG - chr5_2:13058003-13058022 None:intergenic 50.0%
ACAAGGACTTAGATCAGCGG+CGG - chr5_2:13058076-13058095 None:intergenic 50.0%
AGTGAGTCAGAGTTTGGCGA+TGG - chr5_2:13058116-13058135 None:intergenic 50.0%
TTCACAACGAGTAAGGGGCA+CGG - chr5_2:13058388-13058407 None:intergenic 50.0%
TTCCAGCAGCATTAAGGGCA+CGG + chr5_2:13059881-13059900 Msa0758000:intron 50.0%
GGGCACGGTCAACCAAATTA+TGG + chr5_2:13059896-13059915 Msa0758000:intron 50.0%
TGGCCATGACACTAGCAATC+TGG + chr5_2:13059961-13059980 Msa0758000:intron 50.0%
!! GGATGTTCTGGTTCTGATGC+AGG + chr5_2:13060769-13060788 Msa0758000:CDS 50.0%
AGTAGGAGGCAACTTCTACC+TGG - chr5_2:13060962-13060981 None:intergenic 50.0%
!! AAGAGCTGTGTGAGGGTGTT+TGG + chr5_2:13061017-13061036 Msa0758000:intron 50.0%
!! CTGTGTGAGGGTGTTTGGAA+GGG + chr5_2:13061022-13061041 Msa0758000:intron 50.0%
!! TGTGTGAGGGTGTTTGGAAG+GGG + chr5_2:13061023-13061042 Msa0758000:intron 50.0%
AATTGTGGTGCAGGGTGAGA+GGG + chr5_2:13061463-13061482 Msa0758000:intron 50.0%
ATTTCAGCCAACCGATGTGG+AGG - chr5_2:13061557-13061576 None:intergenic 50.0%
CACTTGTGCTACCCTGTATC+TGG + chr5_2:13062396-13062415 Msa0758000:three_prime_UTR 50.0%
TTGCGCTTGTGCCAGATACA+GGG - chr5_2:13062410-13062429 None:intergenic 50.0%
GAGTTTGGCGATGGCGACTA+GGG - chr5_2:13058107-13058126 None:intergenic 55.0%
AGAGTTTGGCGATGGCGACT+AGG - chr5_2:13058108-13058127 None:intergenic 55.0%
AACACGGCTTAGGGTCCGAT+TGG - chr5_2:13058707-13058726 None:intergenic 55.0%
ATCGGTGAGTGGCGCAACAT+TGG - chr5_2:13058965-13058984 None:intergenic 55.0%
GAACTGTTGCTGCTCACCCT+TGG + chr5_2:13059239-13059258 Msa0758000:CDS 55.0%
AATAGCACGAGCACGGAGGA+AGG - chr5_2:13060919-13060938 None:intergenic 55.0%
TTCCTCCGTGCTCGTGCTAT+TGG + chr5_2:13060918-13060937 Msa0758000:CDS 55.0%
!! GCTGTGTGAGGGTGTTTGGA+AGG + chr5_2:13061021-13061040 Msa0758000:intron 55.0%
!! GTGTGAGGGTGTTTGGAAGG+GGG + chr5_2:13061024-13061043 Msa0758000:intron 55.0%
GAATTGTGGTGCAGGGTGAG+AGG + chr5_2:13061462-13061481 Msa0758000:intron 55.0%
AGAGCTTCCTCCACATCGGT+TGG + chr5_2:13061547-13061566 Msa0758000:CDS 55.0%
CTTGCGCTTGTGCCAGATAC+AGG - chr5_2:13062411-13062430 None:intergenic 55.0%
GACCGTGCCCTTAATGCTGC+TGG - chr5_2:13059886-13059905 None:intergenic 60.0%
GTCCAATAGCACGAGCACGG+AGG - chr5_2:13060923-13060942 None:intergenic 60.0%
!! GAGGGTGTTTGGAAGGGGGA+AGG + chr5_2:13061028-13061047 Msa0758000:intron 60.0%
GCATCAACGGCAGACTCAGC+TGG - chr5_2:13062063-13062082 None:intergenic 60.0%
GAGCAGGAGCCTGTGCTACC+CGG + chr5_2:13060891-13060910 Msa0758000:intron 65.0%
!! AGGAAGGTGCCGGGTAGCAC+AGG - chr5_2:13060903-13060922 None:intergenic 65.0%
! ACGAGCACGGAGGAAGGTGC+CGG - chr5_2:13060913-13060932 None:intergenic 65.0%
!! CGAGCACGGAGGAAGGTGCC+GGG - chr5_2:13060912-13060931 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 13057920 13062551 13057920 ID=Msa0758000;Name=Msa0758000
chr5_2 mRNA 13057920 13062551 13057920 ID=Msa0758000-mRNA-1;Parent=Msa0758000;Name=Msa0758000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=255|0.87|0.88|1|0.87|0.88|9|264|216
chr5_2 exon 13057920 13058154 13057920 ID=Msa0758000-mRNA-1:exon:5846;Parent=Msa0758000-mRNA-1
chr5_2 exon 13059131 13059277 13059131 ID=Msa0758000-mRNA-1:exon:5847;Parent=Msa0758000-mRNA-1
chr5_2 exon 13059781 13059809 13059781 ID=Msa0758000-mRNA-1:exon:5848;Parent=Msa0758000-mRNA-1
chr5_2 exon 13060081 13060146 13060081 ID=Msa0758000-mRNA-1:exon:5849;Parent=Msa0758000-mRNA-1
chr5_2 exon 13060683 13060790 13060683 ID=Msa0758000-mRNA-1:exon:5850;Parent=Msa0758000-mRNA-1
chr5_2 exon 13060897 13060962 13060897 ID=Msa0758000-mRNA-1:exon:5851;Parent=Msa0758000-mRNA-1
chr5_2 exon 13061476 13061596 13061476 ID=Msa0758000-mRNA-1:exon:5852;Parent=Msa0758000-mRNA-1
chr5_2 exon 13062007 13062097 13062007 ID=Msa0758000-mRNA-1:exon:5853;Parent=Msa0758000-mRNA-1
chr5_2 exon 13062245 13062551 13062245 ID=Msa0758000-mRNA-1:exon:5854;Parent=Msa0758000-mRNA-1
chr5_2 five_prime_UTR 13057920 13058154 13057920 ID=Msa0758000-mRNA-1:five_prime_utr;Parent=Msa0758000-mRNA-1
chr5_2 five_prime_UTR 13059131 13059150 13059131 ID=Msa0758000-mRNA-1:five_prime_utr;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13059151 13059277 13059151 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13059781 13059809 13059781 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13060081 13060146 13060081 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13060683 13060790 13060683 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13060897 13060962 13060897 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13061476 13061596 13061476 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13062007 13062097 13062007 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 CDS 13062245 13062287 13062245 ID=Msa0758000-mRNA-1:cds;Parent=Msa0758000-mRNA-1
chr5_2 three_prime_UTR 13062288 13062551 13062288 ID=Msa0758000-mRNA-1:three_prime_utr;Parent=Msa0758000-mRNA-1
Gene Sequence

>Msa0758000

ATGGCTAATCATGACGGATCAAATGAATGGTCTTCGAGTTTAACTCACCCTAAGCTCAATGAAAGAATACTCTCTTCAATGTCACGGAGAACTGTTGCTGCTCACCCTTGGCATGATGTAGAGATAGGGCCAGGAGCTCCATCAGTTTTCAACTGTGTGATTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCGGTTGTCTACCCACACAACTACGGTTTTATCCCACGAACCATTTGTGAAGACAGTGATCCTATGGATGTTCTGGTTCTGATGCAGGAGCCTGTGCTACCCGGCACCTTCCTCCGTGCTCGTGCTATTGGACTAATGCCGATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAATTCCGCCATTATACAGACATCAAAGAGCTTCCTCCACATCGGTTGGCTGAAATAAGAAGATTCTTTGAGGATTCCACACTAGACAAGAAGAATGAGAACAAAAAAGTTGATGTTGATGATTTTCTACCAGCTGAGTCTGCCGTTGATGCCATCAAGTATTCCATGGACCTCTATGCTTCTTACATAGTTGAGAGCTTAAGGAAGTGA

Protein sequence

>Msa0758000

MANHDGSNEWSSSLTHPKLNERILSSMSRRTVAAHPWHDVEIGPGAPSVFNCVIEIGKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGTFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDSTLDKKNENKKVDVDDFLPAESAVDAIKYSMDLYASYIVESLRK*