AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0836060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836060 MtrunA17_Chr5g0401881 99.554 224 1 0 1 224 1 224 2.88e-166 457
Msa0836060 MtrunA17_Chr4g0044531 66.146 192 55 2 31 222 38 219 2.38e-87 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836060 AT4G36910.1 75.281 178 44 0 47 224 59 236 3.09e-98 286
Msa0836060 AT4G34120.1 68.750 192 57 1 30 221 47 235 3.11e-93 273

Find 75 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTAGAAGTAAAATTT+TGG 0.185158 5_4:-9441687 Msa0836060:three_prime_UTR
TTAGCTCTGGACTCCATTTC+AGG 0.205192 5_4:-9443685 Msa0836060:intron
TTCTAGTTGAATTGCGATTA+TGG 0.229127 5_4:+9446428 None:intergenic
AATCCTATCATGCTTTCTTT+TGG 0.275870 5_4:+9441783 None:intergenic
TTAAATCAATTTACCTGAAA+TGG 0.278931 5_4:+9443672 None:intergenic
CTTGTTGAGCACAGAATAAC+TGG 0.293494 5_4:-9444503 Msa0836060:CDS
ATTCAACTAGAAAGCTATTA+TGG 0.296576 5_4:-9446417 Msa0836060:exon
GAAATCAAACAACAAATCTT+TGG 0.298554 5_4:+9441748 None:intergenic
TTCCAGATGTTGACAGTACT+TGG 0.329390 5_4:-9443451 Msa0836060:CDS
TTCCCGTGATTGATGATAAC+TGG 0.341524 5_4:-9444478 Msa0836060:CDS
GCGGCGCGTGGATTGAAAAT+AGG 0.355718 5_4:+9446347 None:intergenic
TCCGAATGTTCACATTGATA+AGG 0.418921 5_4:-9441604 Msa0836060:three_prime_UTR
ACCTTCATCCACAGTTGTTG+TGG 0.421202 5_4:+9444656 None:intergenic
CAGCCAAAAGAAAGCATGAT+AGG 0.423036 5_4:-9441786 Msa0836060:exon
CCTTCATCCACAGTTGTTGT+GGG 0.439907 5_4:+9444657 None:intergenic
AATAGGACGGGGAGTGGCGG+AGG 0.446615 5_4:+9446364 None:intergenic
TCCTTATCAATGTGAACATT+CGG 0.451797 5_4:+9441603 None:intergenic
TTCCAAGTACTGTCAACATC+TGG 0.453394 5_4:+9443449 None:intergenic
AGATTACGACCTGTTAGCTC+TGG 0.456324 5_4:-9443698 Msa0836060:CDS
ATTGATGACCACTGCTCCTA+TGG 0.465013 5_4:-9442231 Msa0836060:CDS
AAGTATCTTCTCTTCTAATC+CGG 0.467155 5_4:+9446523 None:intergenic
CTACCCTCAGCATCTACAAC+TGG 0.468514 5_4:+9441959 None:intergenic
AAATGGAGTCCAGAGCTAAC+AGG 0.469784 5_4:+9443689 None:intergenic
TGTAGATGCTGAGGGTAGAT+TGG 0.480195 5_4:-9441954 Msa0836060:intron
CAAAGGAAGAAGAAATTGAA+GGG 0.482298 5_4:+9446460 None:intergenic
TCTCACCGCTAATTCCGTTC+CGG 0.495796 5_4:-9446249 Msa0836060:intron
TAATCATGTTCCACGGGCTA+AGG 0.497927 5_4:-9441538 Msa0836060:three_prime_UTR
CCTAGCAGCATCCTCAAGAT+TGG 0.497947 5_4:+9442193 None:intergenic
GATTGCTGAGTAAGACCAAC+GGG 0.500361 5_4:-9442268 Msa0836060:CDS
CGGAAAGCGACGGCGGCGCG+TGG 0.521919 5_4:+9446335 None:intergenic
ACATACCGGAACGGAATTAG+CGG 0.526014 5_4:+9446244 None:intergenic
GAGTGGCGGAGGAGAGTGTA+GGG 0.527712 5_4:+9446375 None:intergenic
GTTGTATTAATCATGTTCCA+CGG 0.528897 5_4:-9441545 Msa0836060:three_prime_UTR
ACAAAGGAAGAAGAAATTGA+AGG 0.531134 5_4:+9446459 None:intergenic
ATTGAAAATAGGACGGGGAG+TGG 0.534343 5_4:+9446358 None:intergenic
GGAGTGGCGGAGGAGAGTGT+AGG 0.542338 5_4:+9446374 None:intergenic
TTGTATTAATCATGTTCCAC+GGG 0.546451 5_4:-9441544 Msa0836060:three_prime_UTR
GCGTGGATTGAAAATAGGAC+GGG 0.546985 5_4:+9446352 None:intergenic
GCGGAGGAGAGTGTAGGGAA+AGG 0.547075 5_4:+9446380 None:intergenic
GTGGTCTCGCGAACAACCAT+AGG 0.552213 5_4:+9442215 None:intergenic
GGTAAGAACAACTATATCTC+CGG 0.555431 5_4:-9446542 Msa0836060:five_prime_UTR
AGCAGCATCCTCAAGATTGG+TGG 0.555993 5_4:+9442196 None:intergenic
CTTCCAGTTATCATCAATCA+CGG 0.558201 5_4:+9444475 None:intergenic
AAGACCAACGGGAAGGTGAT+CGG 0.559075 5_4:-9442257 Msa0836060:CDS
CGCGTGGATTGAAAATAGGA+CGG 0.574964 5_4:+9446351 None:intergenic
TCGCGAGACCACCAATCTTG+AGG 0.577555 5_4:-9442204 Msa0836060:CDS
TTCACCGATCACCTTCCCGT+TGG 0.578952 5_4:+9442253 None:intergenic
CCCACAACAACTGTGGATGA+AGG 0.580234 5_4:-9444657 Msa0836060:intron
GAAAATAGGACGGGGAGTGG+CGG 0.582724 5_4:+9446361 None:intergenic
CCTTCCAGTTGTAGATGCTG+AGG 0.595431 5_4:-9441963 Msa0836060:CDS
CCAATCTTGAGGATGCTGCT+AGG 0.597922 5_4:-9442193 Msa0836060:intron
TTCCAGTTATCATCAATCAC+GGG 0.598120 5_4:+9444476 None:intergenic
CAATGCTGGTTTCAGGTCAA+GGG 0.599754 5_4:-9443493 Msa0836060:intron
CACATTGATAAGGACCACCT+TGG 0.607291 5_4:-9441594 Msa0836060:three_prime_UTR
TCTTTGTCGCGGTACAACAC+AGG 0.611647 5_4:-9446579 Msa0836060:five_prime_UTR
GAGCGGAGGAGTGGAAGCAT+CGG 0.614909 5_4:+9446315 None:intergenic
CTTGAATTATCCTTAGCCCG+TGG 0.622195 5_4:+9441528 None:intergenic
CTTCCAGTTGTAGATGCTGA+GGG 0.623183 5_4:-9441962 Msa0836060:CDS
AAGGAAGAAGAAATTGAAGG+GGG 0.626210 5_4:+9446462 None:intergenic
CTTTGTCATAAAGTCACCGA+CGG 0.632801 5_4:+9444704 None:intergenic
AAAGGAAGAAGAAATTGAAG+GGG 0.639177 5_4:+9446461 None:intergenic
GTGGAAGCATCGGAAAGCGA+CGG 0.640326 5_4:+9446325 None:intergenic
CGTGGATTGAAAATAGGACG+GGG 0.642145 5_4:+9446353 None:intergenic
CCTCAGCATCTACAACTGGA+AGG 0.651284 5_4:+9441963 None:intergenic
GAAGCATCGGAAAGCGACGG+CGG 0.655395 5_4:+9446328 None:intergenic
AGTGAAGCCCACAACAACTG+TGG 0.656134 5_4:-9444664 Msa0836060:CDS
GCGAACAACCATAGGAGCAG+TGG 0.657026 5_4:+9442223 None:intergenic
GCTGAGTAAGACCAACGGGA+AGG 0.657142 5_4:-9442264 Msa0836060:CDS
AAGGTTGGGATTATCACTAG+AGG 0.659792 5_4:-9441845 Msa0836060:CDS
TTTCAACATCATTATCACCA+AGG 0.662460 5_4:+9441577 None:intergenic
ACACAGGCAAGTGGAGAGTG+AGG 0.669862 5_4:-9446563 Msa0836060:five_prime_UTR
AGATTGCTGAGTAAGACCAA+CGG 0.671463 5_4:-9442269 Msa0836060:CDS
TGTGTTGTTTGTCTTTGTCG+CGG 0.687446 5_4:-9446590 Msa0836060:five_prime_UTR
GATTATGGACCAGAAAACAA+AGG 0.694008 5_4:+9446443 None:intergenic
CAACATCATTATCACCAAGG+TGG 0.699176 5_4:+9441580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAATACAAAATTAAAT+TGG + chr5_4:9443273-9443292 None:intergenic 10.0%
!! TTTGTATTCTTATTATTATT+TGG - chr5_4:9443280-9443299 Msa0836060:intron 10.0%
!! AATTTCAATTAAGATAACAA+GGG + chr5_4:9442643-9442662 None:intergenic 15.0%
!! AAATTTCAATTAAGATAACA+AGG + chr5_4:9442644-9442663 None:intergenic 15.0%
!!! TTTTGATTTGTTATTGATTT+AGG - chr5_4:9442852-9442871 Msa0836060:intron 15.0%
!!! AAAATTAAATTGGTTTGATT+TGG + chr5_4:9443263-9443282 None:intergenic 15.0%
!! AAATTAAAAATGCCAAAAAA+AGG + chr5_4:9444540-9444559 None:intergenic 15.0%
!!! TTGAATTAGAAGTAAAATTT+TGG - chr5_4:9446409-9446428 Msa0836060:exon 15.0%
!! GATAAGAAAAAAAAACATAC+CGG + chr5_4:9441869-9441888 None:intergenic 20.0%
!! TAGCAATTTCTTGAAAAAAT+TGG - chr5_4:9441933-9441952 Msa0836060:intron 20.0%
!! AGCAATTTCTTGAAAAAATT+GGG - chr5_4:9441934-9441953 Msa0836060:intron 20.0%
!! TAATTCTTTCTTCATATTAG+GGG + chr5_4:9442111-9442130 None:intergenic 20.0%
!! CTAATTCTTTCTTCATATTA+GGG + chr5_4:9442112-9442131 None:intergenic 20.0%
!! ATTTCAATTAAGATAACAAG+GGG + chr5_4:9442642-9442661 None:intergenic 20.0%
!!! TATTGAACTTTTGAGTTAAT+AGG + chr5_4:9442986-9443005 None:intergenic 20.0%
!! AATAGATATACTAGAGAAAA+TGG + chr5_4:9443665-9443684 None:intergenic 20.0%
!! ATATCTATTGATAAAACTTG+TGG - chr5_4:9443676-9443695 Msa0836060:intron 20.0%
!!! TATTTAAGACAAACTGAATA+TGG + chr5_4:9443725-9443744 None:intergenic 20.0%
!! ACAATAAAGGAATGAATTAA+AGG + chr5_4:9443882-9443901 None:intergenic 20.0%
!! TTAAATCAATTTACCTGAAA+TGG + chr5_4:9444427-9444446 None:intergenic 20.0%
!!! TTGAAATTATGCTACTTTTT+TGG - chr5_4:9445098-9445117 Msa0836060:intron 20.0%
!!! GATAGTTTATAATTTGTCTT+GGG + chr5_4:9445402-9445421 None:intergenic 20.0%
!!! AGATAGTTTATAATTTGTCT+TGG + chr5_4:9445403-9445422 None:intergenic 20.0%
!! AATTATAAACTATCTATTGC+TGG - chr5_4:9445408-9445427 Msa0836060:intron 20.0%
!! AAATTAAATCATGGTAAATG+AGG + chr5_4:9445465-9445484 None:intergenic 20.0%
!! TCATTTACCATGATTTAATT+TGG - chr5_4:9445464-9445483 Msa0836060:intron 20.0%
!! AAATGTTTATGTTTCTTAGA+TGG - chr5_4:9445677-9445696 Msa0836060:intron 20.0%
!! TCTAATAATGAATTAATCCT+AGG - chr5_4:9445746-9445765 Msa0836060:intron 20.0%
!! TGATGAAAAATATTCAACAA+AGG + chr5_4:9446085-9446104 None:intergenic 20.0%
! ATTCAACTAGAAAGCTATTA+TGG - chr5_4:9441679-9441698 Msa0836060:three_prime_UTR 25.0%
! TTTATTCTATTGTGCCAAAA+TGG - chr5_4:9442000-9442019 Msa0836060:intron 25.0%
! CCTAATTCTTTCTTCATATT+AGG + chr5_4:9442113-9442132 None:intergenic 25.0%
! CCTAATATGAAGAAAGAATT+AGG - chr5_4:9442110-9442129 Msa0836060:intron 25.0%
! GTAATGTTTGGTAAAATAAG+CGG - chr5_4:9442310-9442329 Msa0836060:intron 25.0%
! GGTTGAACTAACTTATAAAT+AGG - chr5_4:9442331-9442350 Msa0836060:intron 25.0%
! GGTAAAGTTGAGATAAATAA+TGG - chr5_4:9442410-9442429 Msa0836060:intron 25.0%
!! TTTTGTATCACACTACTATT+AGG - chr5_4:9442918-9442937 Msa0836060:intron 25.0%
!!! CTTTTGAGTTAATAGGTAAA+AGG + chr5_4:9442979-9442998 None:intergenic 25.0%
!! AAAGTTCAATATTTAGCCTT+AGG - chr5_4:9442995-9443014 Msa0836060:intron 25.0%
!!! AAGTTCAATATTTAGCCTTA+GGG - chr5_4:9442996-9443015 Msa0836060:intron 25.0%
! ATATACTAGAGAAAATGGAT+AGG + chr5_4:9443660-9443679 None:intergenic 25.0%
!! ATATTTGTTGAACTGATTAG+TGG + chr5_4:9444177-9444196 None:intergenic 25.0%
! GTTCAACAAATATAGTTTAG+AGG - chr5_4:9444184-9444203 Msa0836060:intron 25.0%
!!! GTCATGAAAATTATTTCTGA+AGG - chr5_4:9444344-9444363 Msa0836060:intron 25.0%
!! TCTTATCTGTTTTCATTTGT+TGG - chr5_4:9444457-9444476 Msa0836060:intron 25.0%
! AAAATGCTGTAAATTTCTGA+AGG + chr5_4:9444500-9444519 None:intergenic 25.0%
!!! ATTTGTTTCTATTCCAAAGT+TGG - chr5_4:9444556-9444575 Msa0836060:intron 25.0%
! TATTGTGTTACAATACTTTC+TGG - chr5_4:9444716-9444735 Msa0836060:CDS 25.0%
! ATATGTATTGTTAGTGTACT+GGG + chr5_4:9444845-9444864 None:intergenic 25.0%
! TACACTAACAATACATATCT+TGG - chr5_4:9444847-9444866 Msa0836060:intron 25.0%
!!! TATGCTACTTTTTTGGTAAA+AGG - chr5_4:9445105-9445124 Msa0836060:intron 25.0%
!! TAAAAGGAATTTTACTGCAA+AGG - chr5_4:9445121-9445140 Msa0836060:intron 25.0%
!! AAAAGGAATTTTACTGCAAA+GGG - chr5_4:9445122-9445141 Msa0836060:intron 25.0%
! GAAGGAACATAGTATATATT+TGG + chr5_4:9445161-9445180 None:intergenic 25.0%
! GATTGTTCCAAATTAAATCA+TGG + chr5_4:9445474-9445493 None:intergenic 25.0%
!! ACATGTTTCTATGATATGTT+TGG + chr5_4:9445630-9445649 None:intergenic 25.0%
! ACAAACATGAAAACAATGAA+AGG + chr5_4:9446203-9446222 None:intergenic 25.0%
!! CATTGTTTTCATGTTTGTAA+AGG - chr5_4:9446205-9446224 Msa0836060:intron 25.0%
!!! TGTTTTTATGTGATACATGA+AGG - chr5_4:9446232-9446251 Msa0836060:intron 25.0%
! GAAATCAAACAACAAATCTT+TGG + chr5_4:9446351-9446370 None:intergenic 25.0%
!!! TAGAAGTAAAATTTTGGCTT+AGG - chr5_4:9446415-9446434 Msa0836060:exon 25.0%
AAGTATCTTCTCTTCTAATC+CGG + chr5_4:9441576-9441595 None:intergenic 30.0%
AAAGGAAGAAGAAATTGAAG+GGG + chr5_4:9441638-9441657 None:intergenic 30.0%
CAAAGGAAGAAGAAATTGAA+GGG + chr5_4:9441639-9441658 None:intergenic 30.0%
ACAAAGGAAGAAGAAATTGA+AGG + chr5_4:9441640-9441659 None:intergenic 30.0%
!!! TTTCTTCTTCCTTTGTTTTC+TGG - chr5_4:9441644-9441663 Msa0836060:three_prime_UTR 30.0%
! TTCTAGTTGAATTGCGATTA+TGG + chr5_4:9441671-9441690 None:intergenic 30.0%
GAAAAAAAAACATACCGGAA+CGG + chr5_4:9441864-9441883 None:intergenic 30.0%
CTTATCCTCACGTATAAATT+TGG - chr5_4:9441883-9441902 Msa0836060:intron 30.0%
AAGACATCTGCTATAAACTA+GGG + chr5_4:9442179-9442198 None:intergenic 30.0%
TAAGACATCTGCTATAAACT+AGG + chr5_4:9442180-9442199 None:intergenic 30.0%
CGGATAAATAAACTAACTGA+TGG - chr5_4:9442278-9442297 Msa0836060:CDS 30.0%
! TGGAGTATCTTTGTAATGTT+TGG - chr5_4:9442298-9442317 Msa0836060:intron 30.0%
!! CATCTCAAAAAGCACTATAT+GGG + chr5_4:9442571-9442590 None:intergenic 30.0%
!! ACATCTCAAAAAGCACTATA+TGG + chr5_4:9442572-9442591 None:intergenic 30.0%
GTTAGATAAAAAGTAGCAGA+TGG + chr5_4:9442745-9442764 None:intergenic 30.0%
CCTGTAAATAGAGATTAGTA+CGG - chr5_4:9442891-9442910 Msa0836060:intron 30.0%
GGTAAAAGGAAGATAATAAG+AGG + chr5_4:9442965-9442984 None:intergenic 30.0%
! AAACACATACTTAGTCTTTG+AGG - chr5_4:9443155-9443174 Msa0836060:intron 30.0%
ACACATGTTATGTCAAACTA+GGG + chr5_4:9443336-9443355 None:intergenic 30.0%
AACACATGTTATGTCAAACT+AGG + chr5_4:9443337-9443356 None:intergenic 30.0%
ATAATGTGCAGCCAAAAAAT+GGG - chr5_4:9443362-9443381 Msa0836060:intron 30.0%
! AATCTTTTCTTCCCTTCTTT+TGG - chr5_4:9443498-9443517 Msa0836060:intron 30.0%
! ATCTTTTCTTCCCTTCTTTT+GGG - chr5_4:9443499-9443518 Msa0836060:intron 30.0%
AAACTAACTACCCAAAAGAA+GGG + chr5_4:9443512-9443531 None:intergenic 30.0%
AAAACTAACTACCCAAAAGA+AGG + chr5_4:9443513-9443532 None:intergenic 30.0%
!! TTCTTTTGGGTAGTTAGTTT+TGG - chr5_4:9443512-9443531 Msa0836060:intron 30.0%
!!! CATTTATTTTGCAACAGCTT+TGG - chr5_4:9443565-9443584 Msa0836060:intron 30.0%
ATGGAAAGAGCAATGATATA+TGG + chr5_4:9443706-9443725 None:intergenic 30.0%
GTAGTTAAACAATGTTGTGA+TGG - chr5_4:9443812-9443831 Msa0836060:intron 30.0%
TTAAACAATGTTGTGATGGT+GGG - chr5_4:9443816-9443835 Msa0836060:intron 30.0%
TTCTTACTCAAATCAGAGTT+AGG + chr5_4:9443962-9443981 None:intergenic 30.0%
!!! TTTCTGTTTTTTCACGTTGT+CGG + chr5_4:9444002-9444021 None:intergenic 30.0%
AAATCGTCAGATTCAATTGT+GGG + chr5_4:9444222-9444241 None:intergenic 30.0%
AAAATCGTCAGATTCAATTG+TGG + chr5_4:9444223-9444242 None:intergenic 30.0%
! TTACAGCATTTTCATTTCAG+AGG - chr5_4:9444508-9444527 Msa0836060:CDS 30.0%
!! CAGCATTGCACATTTTATTT+CGG + chr5_4:9444591-9444610 None:intergenic 30.0%
TCCATTGCATATTTACGTTA+AGG - chr5_4:9444741-9444760 Msa0836060:intron 30.0%
TCCTTAACGTAAATATGCAA+TGG + chr5_4:9444745-9444764 None:intergenic 30.0%
GTATTAACAACACAAAGTTC+TGG + chr5_4:9444769-9444788 None:intergenic 30.0%
ACTTATTATTACCCAACAAG+AGG - chr5_4:9444787-9444806 Msa0836060:intron 30.0%
GATATGTATTGTTAGTGTAC+TGG + chr5_4:9444846-9444865 None:intergenic 30.0%
CTGCAAAATTTCCTATAGTT+GGG + chr5_4:9444887-9444906 None:intergenic 30.0%
ACTGCAAAATTTCCTATAGT+TGG + chr5_4:9444888-9444907 None:intergenic 30.0%
!!! TTACGCATTTTTGAAGTAGA+AGG - chr5_4:9445009-9445028 Msa0836060:intron 30.0%
!! GTTGCTTACAAGTTTTATGA+AGG + chr5_4:9445179-9445198 None:intergenic 30.0%
AAACCCACTCTTCAATAATA+TGG - chr5_4:9445496-9445515 Msa0836060:intron 30.0%
AACCCACTCTTCAATAATAT+GGG - chr5_4:9445497-9445516 Msa0836060:intron 30.0%
AACGTAAACATTACCATCTA+TGG + chr5_4:9445556-9445575 None:intergenic 30.0%
GAATTAATCCTAGGTCTTAA+AGG - chr5_4:9445755-9445774 Msa0836060:intron 30.0%
TTCAAAATGAACAGACACAA+AGG + chr5_4:9445944-9445963 None:intergenic 30.0%
ATGACACGCATAAAATTCAA+CGG + chr5_4:9446029-9446048 None:intergenic 30.0%
! ATTTTTCATCAGATTGTTGC+TGG - chr5_4:9446094-9446113 Msa0836060:intron 30.0%
TTTATGTGATACATGAAGGT+TGG - chr5_4:9446236-9446255 Msa0836060:intron 30.0%
TTATGTGATACATGAAGGTT+GGG - chr5_4:9446237-9446256 Msa0836060:intron 30.0%
! AATCCTATCATGCTTTCTTT+TGG + chr5_4:9446316-9446335 None:intergenic 30.0%
TCCTTATCAATGTGAACATT+CGG + chr5_4:9446496-9446515 None:intergenic 30.0%
TTTCAACATCATTATCACCA+AGG + chr5_4:9446522-9446541 None:intergenic 30.0%
GTTGTATTAATCATGTTCCA+CGG - chr5_4:9446551-9446570 Msa0836060:five_prime_UTR 30.0%
TTGTATTAATCATGTTCCAC+GGG - chr5_4:9446552-9446571 Msa0836060:five_prime_UTR 30.0%
GGTAAGAACAACTATATCTC+CGG - chr5_4:9441554-9441573 Msa0836060:three_prime_UTR 35.0%
AAGGAAGAAGAAATTGAAGG+GGG + chr5_4:9441637-9441656 None:intergenic 35.0%
GATTATGGACCAGAAAACAA+AGG + chr5_4:9441656-9441675 None:intergenic 35.0%
!! ACGAAGCTTTGAAAAATGAG+CGG + chr5_4:9441801-9441820 None:intergenic 35.0%
CTACACCAAATTTATACGTG+AGG + chr5_4:9441891-9441910 None:intergenic 35.0%
!! GTGAAGCATTTCAACCATTT+TGG + chr5_4:9442017-9442036 None:intergenic 35.0%
AGACATCTGCTATAAACTAG+GGG + chr5_4:9442178-9442197 None:intergenic 35.0%
GCTGATAAGTTAGATGATAG+CGG - chr5_4:9442258-9442277 Msa0836060:CDS 35.0%
AAAATTGCTATAAGCTCGTG+AGG - chr5_4:9442457-9442476 Msa0836060:intron 35.0%
TACAGTATCTCTTGACTCTT+AGG - chr5_4:9442803-9442822 Msa0836060:intron 35.0%
CCGTACTAATCTCTATTTAC+AGG + chr5_4:9442894-9442913 None:intergenic 35.0%
AGGCCATCATCAATAATACT+CGG - chr5_4:9442938-9442957 Msa0836060:intron 35.0%
TAAGTATGTGTTTGTGCAAG+CGG + chr5_4:9443148-9443167 None:intergenic 35.0%
!! TATCCGACTGTTTCTAATAG+AGG - chr5_4:9443214-9443233 Msa0836060:intron 35.0%
CTTCCTCTATTAGAAACAGT+CGG + chr5_4:9443220-9443239 None:intergenic 35.0%
CATAATGTGCAGCCAAAAAA+TGG - chr5_4:9443361-9443380 Msa0836060:intron 35.0%
TAATGTGCAGCCAAAAAATG+GGG - chr5_4:9443363-9443382 Msa0836060:intron 35.0%
! ACCTTGTTGAAGTCTCATTT+TGG - chr5_4:9443472-9443491 Msa0836060:CDS 35.0%
! CCTTGTTGAAGTCTCATTTT+GGG - chr5_4:9443473-9443492 Msa0836060:CDS 35.0%
!!! TTTTGGGTAGTTAGTTTTGG+TGG - chr5_4:9443515-9443534 Msa0836060:intron 35.0%
TTCCAGTTATCATCAATCAC+GGG + chr5_4:9443623-9443642 None:intergenic 35.0%
CTTCCAGTTATCATCAATCA+CGG + chr5_4:9443624-9443643 None:intergenic 35.0%
GTTAAACAATGTTGTGATGG+TGG - chr5_4:9443815-9443834 Msa0836060:intron 35.0%
AAGACACCTGCTATATTATG+CGG - chr5_4:9443903-9443922 Msa0836060:intron 35.0%
!!! CGGCTTTGGATTTTTAACAA+AGG - chr5_4:9443923-9443942 Msa0836060:intron 35.0%
!! ACGTTGTCGGTTTCTTAAAA+CGG + chr5_4:9443989-9444008 None:intergenic 35.0%
TTTAACAGAATCTTAGCCAG+CGG + chr5_4:9444042-9444061 None:intergenic 35.0%
AAAACATGCAGTATGCATAG+AGG + chr5_4:9444089-9444108 None:intergenic 35.0%
CGAGCTATACTTTCATTTAG+AGG - chr5_4:9444147-9444166 Msa0836060:intron 35.0%
GCATTTGTGAAGACATTCAA+AGG + chr5_4:9444248-9444267 None:intergenic 35.0%
GAAGGTTGTTTATGCTTTGT+AGG - chr5_4:9444362-9444381 Msa0836060:intron 35.0%
GTTGTTTATGCTTTGTAGGT+TGG - chr5_4:9444366-9444385 Msa0836060:intron 35.0%
! ATGCTGTAAATTTCTGAAGG+TGG + chr5_4:9444497-9444516 None:intergenic 35.0%
!!! CAGAGGATACTACCTTTTTT+TGG - chr5_4:9444525-9444544 Msa0836060:intron 35.0%
CGAAATAAAATGTGCAATGC+TGG - chr5_4:9444589-9444608 Msa0836060:intron 35.0%
TCAGTAAAACTCCTCTTGTT+GGG + chr5_4:9444801-9444820 None:intergenic 35.0%
! GTTTTACTGAGCTGATGTTT+TGG - chr5_4:9444811-9444830 Msa0836060:intron 35.0%
AGTGGTAACTATTGTGAAAG+AGG + chr5_4:9445061-9445080 None:intergenic 35.0%
CTTTCACAATAGTTACCACT+TGG - chr5_4:9445061-9445080 Msa0836060:intron 35.0%
AACTTGTAAGCAACTTCTCA+AGG - chr5_4:9445185-9445204 Msa0836060:intron 35.0%
AGCCATATCTTATCCAATGT+GGG + chr5_4:9445251-9445270 None:intergenic 35.0%
AAGCCATATCTTATCCAATG+TGG + chr5_4:9445252-9445271 None:intergenic 35.0%
AGAATATGTTCACAAGTCGT+GGG - chr5_4:9445273-9445292 Msa0836060:intron 35.0%
GAAAACCTCACCTTACAAAT+CGG - chr5_4:9445295-9445314 Msa0836060:intron 35.0%
!! ACCTTACAAATCGGTTTGTA+GGG - chr5_4:9445304-9445323 Msa0836060:intron 35.0%
AAACTATCTATTGCTGGTGT+AGG - chr5_4:9445414-9445433 Msa0836060:intron 35.0%
CACCCATATTATTGAAGAGT+GGG + chr5_4:9445502-9445521 None:intergenic 35.0%
TTAAATGCATGCTCCATAGA+TGG - chr5_4:9445540-9445559 Msa0836060:intron 35.0%
TCATAGAAACATGTTCAGCA+CGG - chr5_4:9445636-9445655 Msa0836060:intron 35.0%
TTAATCCTAGGTCTTAAAGG+TGG - chr5_4:9445758-9445777 Msa0836060:intron 35.0%
ATGAACAGACACAAAGGAAA+AGG + chr5_4:9445938-9445957 None:intergenic 35.0%
GCATAAAATTCAACGGTTTG+AGG + chr5_4:9446022-9446041 None:intergenic 35.0%
CCAAAGATAACAGAAGAAAG+GGG + chr5_4:9446175-9446194 None:intergenic 35.0%
CCCAAAGATAACAGAAGAAA+GGG + chr5_4:9446176-9446195 None:intergenic 35.0%
CCCTTTCTTCTGTTATCTTT+GGG - chr5_4:9446173-9446192 Msa0836060:intron 35.0%
ACCCAAAGATAACAGAAGAA+AGG + chr5_4:9446177-9446196 None:intergenic 35.0%
TCCGAATGTTCACATTGATA+AGG - chr5_4:9446492-9446511 Msa0836060:five_prime_UTR 35.0%
!! TGTGTTGTTTGTCTTTGTCG+CGG - chr5_4:9441506-9441525 Msa0836060:three_prime_UTR 40.0%
!! AAATTGAAGGGGGTTTTGGT+GGG + chr5_4:9441627-9441646 None:intergenic 40.0%
! GAAGAAATTGAAGGGGGTTT+TGG + chr5_4:9441631-9441650 None:intergenic 40.0%
!! AAGCTTTGAAAAATGAGCGG+AGG + chr5_4:9441798-9441817 None:intergenic 40.0%
!! GCTCATTTTTCAAAGCTTCG+TGG - chr5_4:9441800-9441819 Msa0836060:CDS 40.0%
! AGAGTGTTAGCAGCAAAAAG+CGG + chr5_4:9441830-9441849 None:intergenic 40.0%
TCACTTTGCAATTCTCCCAA+AGG - chr5_4:9442033-9442052 Msa0836060:intron 40.0%
CACTTTGCAATTCTCCCAAA+GGG - chr5_4:9442034-9442053 Msa0836060:intron 40.0%
ATACAAGCTATCGTCCCTTT+GGG + chr5_4:9442051-9442070 None:intergenic 40.0%
AATACAAGCTATCGTCCCTT+TGG + chr5_4:9442052-9442071 None:intergenic 40.0%
GAATTAGGCTCTGTTTAGCA+AGG - chr5_4:9442125-9442144 Msa0836060:intron 40.0%
TCTGCTATAAACTAGGGGTT+CGG + chr5_4:9442173-9442192 None:intergenic 40.0%
GCAGTCAAAGTAGAGTTGTT+TGG - chr5_4:9442216-9442235 Msa0836060:CDS 40.0%
TCATCTAACTTATCAGCTCG+TGG + chr5_4:9442255-9442274 None:intergenic 40.0%
TTCCTCAAGCAAGATTGCAT+AGG - chr5_4:9442388-9442407 Msa0836060:intron 40.0%
TCCTCAAGCAAGATTGCATA+GGG - chr5_4:9442389-9442408 Msa0836060:intron 40.0%
CTATATGGGTCTGTTTGGTA+AGG + chr5_4:9442557-9442576 None:intergenic 40.0%
AAGCACTATATGGGTCTGTT+TGG + chr5_4:9442562-9442581 None:intergenic 40.0%
CAGATGGTGAATAAACTAGC+AGG + chr5_4:9442729-9442748 None:intergenic 40.0%
GGTCCGAGTATTATTGATGA+TGG + chr5_4:9442944-9442963 None:intergenic 40.0%
!! ATTTAGCCTTAGGGTGTGTT+TGG - chr5_4:9443005-9443024 Msa0836060:intron 40.0%
!! TTTAGCCTTAGGGTGTGTTT+GGG - chr5_4:9443006-9443025 Msa0836060:intron 40.0%
! TTTGGAGCTTCTTGGAATCA+CGG + chr5_4:9443075-9443094 None:intergenic 40.0%
TGATTCCAAGAAGCTCCAAA+AGG - chr5_4:9443075-9443094 Msa0836060:intron 40.0%
! TTTGAGGAGAAGCTACCTTT+TGG + chr5_4:9443093-9443112 None:intergenic 40.0%
!! CGACTGTTTCTAATAGAGGA+AGG - chr5_4:9443218-9443237 Msa0836060:intron 40.0%
AGAGGAAGGTAGTTCCTATT+TGG - chr5_4:9443232-9443251 Msa0836060:intron 40.0%
GAGGAAGGTAGTTCCTATTT+GGG - chr5_4:9443233-9443252 Msa0836060:intron 40.0%
AGGAAGGTAGTTCCTATTTG+GGG - chr5_4:9443234-9443253 Msa0836060:intron 40.0%
!! TTGATTTGGCTACCCCAAAT+AGG + chr5_4:9443249-9443268 None:intergenic 40.0%
CTTTGTCATAAAGTCACCGA+CGG + chr5_4:9443395-9443414 None:intergenic 40.0%
CCCAAAATGAGACTTCAACA+AGG + chr5_4:9443476-9443495 None:intergenic 40.0%
CTTGTTGAGCACAGAATAAC+TGG - chr5_4:9443593-9443612 Msa0836060:intron 40.0%
! TTCCCGTGATTGATGATAAC+TGG - chr5_4:9443618-9443637 Msa0836060:intron 40.0%
! AGGACAGCAGATTTTGAATG+AGG + chr5_4:9443862-9443881 None:intergenic 40.0%
AGCAGGTGTCTTGACAATAA+AGG + chr5_4:9443895-9443914 None:intergenic 40.0%
TGCAGTTAGCACAATATTGC+AGG - chr5_4:9444314-9444333 Msa0836060:intron 40.0%
!! AAATGTGCAATGCTGGTTTC+AGG - chr5_4:9444596-9444615 Msa0836060:intron 40.0%
TTCCAGATGTTGACAGTACT+TGG - chr5_4:9444645-9444664 Msa0836060:intron 40.0%
! TTCCAAGTACTGTCAACATC+TGG + chr5_4:9444650-9444669 None:intergenic 40.0%
CTCAGTAAAACTCCTCTTGT+TGG + chr5_4:9444802-9444821 None:intergenic 40.0%
TTTACCTGTGTCCCAACTAT+AGG - chr5_4:9444873-9444892 Msa0836060:intron 40.0%
ATTTCCTATAGTTGGGACAC+AGG + chr5_4:9444880-9444899 None:intergenic 40.0%
TACCACTTGGTTGCTCATTA+TGG - chr5_4:9445074-9445093 Msa0836060:intron 40.0%
AACCATAATGAGCAACCAAG+TGG + chr5_4:9445079-9445098 None:intergenic 40.0%
GTCCCACATTGGATAAGATA+TGG - chr5_4:9445246-9445265 Msa0836060:intron 40.0%
GAGAATATGTTCACAAGTCG+TGG - chr5_4:9445272-9445291 Msa0836060:intron 40.0%
!! ACAAACCGATTTGTAAGGTG+AGG + chr5_4:9445303-9445322 None:intergenic 40.0%
!! CACCTTACAAATCGGTTTGT+AGG - chr5_4:9445303-9445322 Msa0836060:intron 40.0%
!! ACCCTACAAACCGATTTGTA+AGG + chr5_4:9445308-9445327 None:intergenic 40.0%
TCATGGTAAATGAGGCAACA+CGG + chr5_4:9445457-9445476 None:intergenic 40.0%
CCACCCATATTATTGAAGAG+TGG + chr5_4:9445503-9445522 None:intergenic 40.0%
CCACTCTTCAATAATATGGG+TGG - chr5_4:9445500-9445519 Msa0836060:intron 40.0%
!! CAAATCCACCTTTAAGACCT+AGG + chr5_4:9445766-9445785 None:intergenic 40.0%
AGATTGCTGAGTAAGACCAA+CGG - chr5_4:9445827-9445846 Msa0836060:intron 40.0%
CCCCTTTCTTCTGTTATCTT+TGG - chr5_4:9446172-9446191 Msa0836060:intron 40.0%
AAGGTTGGGATTATCACTAG+AGG - chr5_4:9446251-9446270 Msa0836060:CDS 40.0%
! CAGCCAAAAGAAAGCATGAT+AGG - chr5_4:9446310-9446329 Msa0836060:CDS 40.0%
CAACATCATTATCACCAAGG+TGG + chr5_4:9446519-9446538 None:intergenic 40.0%
!! GAAATTGAAGGGGGTTTTGG+TGG + chr5_4:9441628-9441647 None:intergenic 45.0%
ATTGAAAATAGGACGGGGAG+TGG + chr5_4:9441741-9441760 None:intergenic 45.0%
! CGTGGATTGAAAATAGGACG+GGG + chr5_4:9441746-9441765 None:intergenic 45.0%
! GCGTGGATTGAAAATAGGAC+GGG + chr5_4:9441747-9441766 None:intergenic 45.0%
! CGCGTGGATTGAAAATAGGA+CGG + chr5_4:9441748-9441767 None:intergenic 45.0%
TTGAAAAATGAGCGGAGGAG+TGG + chr5_4:9441793-9441812 None:intergenic 45.0%
AGTGTTAGCAGCAAAAAGCG+GGG + chr5_4:9441828-9441847 None:intergenic 45.0%
GAGTGTTAGCAGCAAAAAGC+GGG + chr5_4:9441829-9441848 None:intergenic 45.0%
ACATACCGGAACGGAATTAG+CGG + chr5_4:9441855-9441874 None:intergenic 45.0%
ACCCTATGCAATCTTGCTTG+AGG + chr5_4:9442393-9442412 None:intergenic 45.0%
ATAAGCTCGTGAGGAACTGA+TGG - chr5_4:9442466-9442485 Msa0836060:intron 45.0%
! TTAGGGTGTGTTTGGGATCA+CGG - chr5_4:9443013-9443032 Msa0836060:intron 45.0%
!!! AGCTACCTTTTGGAGCTTCT+TGG + chr5_4:9443083-9443102 None:intergenic 45.0%
CGGTGGGAAAATCAATTCAG+CGG + chr5_4:9443128-9443147 None:intergenic 45.0%
TATGTGTTTGTGCAAGCGGT+GGG + chr5_4:9443144-9443163 None:intergenic 45.0%
!!! ACGGTGTAGACCCCATTTTT+TGG + chr5_4:9443376-9443395 None:intergenic 45.0%
AAAAATGGGGTCTACACCGT+CGG - chr5_4:9443376-9443395 Msa0836060:intron 45.0%
CCTTCATCCACAGTTGTTGT+GGG + chr5_4:9443442-9443461 None:intergenic 45.0%
ACCTTCATCCACAGTTGTTG+TGG + chr5_4:9443443-9443462 None:intergenic 45.0%
TGAGGAAAAGTTACGCTGAG+AGG + chr5_4:9443844-9443863 None:intergenic 45.0%
CCAAAGCCGCATAATATAGC+AGG + chr5_4:9443912-9443931 None:intergenic 45.0%
CCTGCTATATTATGCGGCTT+TGG - chr5_4:9443909-9443928 Msa0836060:intron 45.0%
AAAGCTTCAGTAAATGCCGC+TGG - chr5_4:9444023-9444042 Msa0836060:intron 45.0%
CGTCAGATTCAATTGTGGGA+AGG + chr5_4:9444218-9444237 None:intergenic 45.0%
AGATTACGACCTGTTAGCTC+TGG - chr5_4:9444398-9444417 Msa0836060:intron 45.0%
AAATGGAGTCCAGAGCTAAC+AGG + chr5_4:9444410-9444429 None:intergenic 45.0%
!! TTAGCTCTGGACTCCATTTC+AGG - chr5_4:9444411-9444430 Msa0836060:intron 45.0%
TCGGCTTAGAACTCCAACTT+TGG + chr5_4:9444572-9444591 None:intergenic 45.0%
!! CAATGCTGGTTTCAGGTCAA+GGG - chr5_4:9444603-9444622 Msa0836060:intron 45.0%
!! TTGACTGAGCTTGTTGGAAG+GGG + chr5_4:9444943-9444962 None:intergenic 45.0%
!! CTTGACTGAGCTTGTTGGAA+GGG + chr5_4:9444944-9444963 None:intergenic 45.0%
!! ACTTGACTGAGCTTGTTGGA+AGG + chr5_4:9444945-9444964 None:intergenic 45.0%
AAGCACTTGACTGAGCTTGT+TGG + chr5_4:9444949-9444968 None:intergenic 45.0%
TCTGTTGAGAAGTCCCACAT+TGG - chr5_4:9445235-9445254 Msa0836060:intron 45.0%
! TCGGTTTGTAGGGTTGAGTT+AGG - chr5_4:9445314-9445333 Msa0836060:intron 45.0%
CGGTTTGTAGGGTTGAGTTA+GGG - chr5_4:9445315-9445334 Msa0836060:intron 45.0%
ATGGTAAATGAGGCAACACG+GGG + chr5_4:9445455-9445474 None:intergenic 45.0%
CATGGTAAATGAGGCAACAC+GGG + chr5_4:9445456-9445475 None:intergenic 45.0%
GATTGCTGAGTAAGACCAAC+GGG - chr5_4:9445828-9445847 Msa0836060:intron 45.0%
! ATTGATGACCACTGCTCCTA+TGG - chr5_4:9445865-9445884 Msa0836060:intron 45.0%
CTTCCAGTTGTAGATGCTGA+GGG - chr5_4:9446134-9446153 Msa0836060:intron 45.0%
TGTAGATGCTGAGGGTAGAT+TGG - chr5_4:9446142-9446161 Msa0836060:intron 45.0%
CACATTGATAAGGACCACCT+TGG - chr5_4:9446502-9446521 Msa0836060:five_prime_UTR 45.0%
! TAATCATGTTCCACGGGCTA+AGG - chr5_4:9446558-9446577 Msa0836060:five_prime_UTR 45.0%
CTTGAATTATCCTTAGCCCG+TGG + chr5_4:9446571-9446590 None:intergenic 45.0%
!! AAATATAAAATGATATAAAA+AGG + chr5_4:9442687-9442706 None:intergenic 5.0%
TCTTTGTCGCGGTACAACAC+AGG - chr5_4:9441517-9441536 Msa0836060:three_prime_UTR 50.0%
TCTCACCGCTAATTCCGTTC+CGG - chr5_4:9441847-9441866 Msa0836060:intron 50.0%
TAGGCTCTGTTTAGCAAGGC+CGG - chr5_4:9442129-9442148 Msa0836060:intron 50.0%
GTTCGGCTTTGCTAACTAGG+GGG + chr5_4:9442156-9442175 None:intergenic 50.0%
GGTTCGGCTTTGCTAACTAG+GGG + chr5_4:9442157-9442176 None:intergenic 50.0%
GGGTTCGGCTTTGCTAACTA+GGG + chr5_4:9442158-9442177 None:intergenic 50.0%
GTGATCCCAAACACACCCTA+AGG + chr5_4:9443014-9443033 None:intergenic 50.0%
! AACACCTTTTGCGCGTTACG+AGG - chr5_4:9443040-9443059 Msa0836060:intron 50.0%
AATGCCTCGTAACGCGCAAA+AGG + chr5_4:9443047-9443066 None:intergenic 50.0%
AGGTAGCTTCTCCTCAAACG+TGG - chr5_4:9443095-9443114 Msa0836060:intron 50.0%
GCGGCAAAAAACCACGTTTG+AGG + chr5_4:9443109-9443128 None:intergenic 50.0%
GTATGTGTTTGTGCAAGCGG+TGG + chr5_4:9443145-9443164 None:intergenic 50.0%
AGTGAAGCCCACAACAACTG+TGG - chr5_4:9443432-9443451 Msa0836060:intron 50.0%
CCCACAACAACTGTGGATGA+AGG - chr5_4:9443439-9443458 Msa0836060:intron 50.0%
!! GCAATGCTGGTTTCAGGTCA+AGG - chr5_4:9444602-9444621 Msa0836060:intron 50.0%
!! TGACTGAGCTTGTTGGAAGG+GGG + chr5_4:9444942-9444961 None:intergenic 50.0%
GTTGAGTTAGGGCTAACCCA+AGG - chr5_4:9445326-9445345 Msa0836060:intron 50.0%
AACACACGTCCATCACGCTT+AGG + chr5_4:9445372-9445391 None:intergenic 50.0%
AAGACCAACGGGAAGGTGAT+CGG - chr5_4:9445839-9445858 Msa0836060:intron 50.0%
AGCAGCATCCTCAAGATTGG+TGG + chr5_4:9445903-9445922 None:intergenic 50.0%
CCTAGCAGCATCCTCAAGAT+TGG + chr5_4:9445906-9445925 None:intergenic 50.0%
CCAATCTTGAGGATGCTGCT+AGG - chr5_4:9445903-9445922 Msa0836060:intron 50.0%
CCTCAGCATCTACAACTGGA+AGG + chr5_4:9446136-9446155 None:intergenic 50.0%
CCTTCCAGTTGTAGATGCTG+AGG - chr5_4:9446133-9446152 Msa0836060:intron 50.0%
CTACCCTCAGCATCTACAAC+TGG + chr5_4:9446140-9446159 None:intergenic 50.0%
ACACAGGCAAGTGGAGAGTG+AGG - chr5_4:9441533-9441552 Msa0836060:three_prime_UTR 55.0%
GAAAATAGGACGGGGAGTGG+CGG + chr5_4:9441738-9441757 None:intergenic 55.0%
! GCGGCGCGTGGATTGAAAAT+AGG + chr5_4:9441752-9441771 None:intergenic 55.0%
!! GTGGAAGCATCGGAAAGCGA+CGG + chr5_4:9441774-9441793 None:intergenic 55.0%
GCTTTGCTAACTAGGGGGTC+CGG + chr5_4:9442151-9442170 None:intergenic 55.0%
GGGGTTCGGCTTTGCTAACT+AGG + chr5_4:9442159-9442178 None:intergenic 55.0%
GGAGCTTCTTGGAATCACGG+TGG + chr5_4:9443072-9443091 None:intergenic 55.0%
TGTTGGAAGGGGGAGGGATA+GGG + chr5_4:9444932-9444951 None:intergenic 55.0%
TTGTTGGAAGGGGGAGGGAT+AGG + chr5_4:9444933-9444952 None:intergenic 55.0%
!! TGAGCTTGTTGGAAGGGGGA+GGG + chr5_4:9444938-9444957 None:intergenic 55.0%
GACAGCTGGAGTGTGACCTT+GGG + chr5_4:9445345-9445364 None:intergenic 55.0%
CTGTCCAGTCCTAAGCGTGA+TGG - chr5_4:9445360-9445379 Msa0836060:intron 55.0%
ACGTCCATCACGCTTAGGAC+TGG + chr5_4:9445367-9445386 None:intergenic 55.0%
GTAAATGAGGCAACACGGGG+AGG + chr5_4:9445452-9445471 None:intergenic 55.0%
GCTGAGTAAGACCAACGGGA+AGG - chr5_4:9445832-9445851 Msa0836060:intron 55.0%
TTCACCGATCACCTTCCCGT+TGG + chr5_4:9445846-9445865 None:intergenic 55.0%
GCGAACAACCATAGGAGCAG+TGG + chr5_4:9445876-9445895 None:intergenic 55.0%
GTGGTCTCGCGAACAACCAT+AGG + chr5_4:9445884-9445903 None:intergenic 55.0%
TCGCGAGACCACCAATCTTG+AGG - chr5_4:9445892-9445911 Msa0836060:intron 55.0%
CGCGGTACAACACAGGCAAG+TGG - chr5_4:9441524-9441543 Msa0836060:three_prime_UTR 60.0%
! GCGGAGGAGAGTGTAGGGAA+AGG + chr5_4:9441719-9441738 None:intergenic 60.0%
! GAGTGGCGGAGGAGAGTGTA+GGG + chr5_4:9441724-9441743 None:intergenic 60.0%
!! GAAGCATCGGAAAGCGACGG+CGG + chr5_4:9441771-9441790 None:intergenic 60.0%
! GAGCGGAGGAGTGGAAGCAT+CGG + chr5_4:9441784-9441803 None:intergenic 60.0%
!! CTGAGCTTGTTGGAAGGGGG+AGG + chr5_4:9444939-9444958 None:intergenic 60.0%
GGACAGCTGGAGTGTGACCT+TGG + chr5_4:9445346-9445365 None:intergenic 60.0%
CACGCTTAGGACTGGACAGC+TGG + chr5_4:9445359-9445378 None:intergenic 60.0%
! GGAGTGGCGGAGGAGAGTGT+AGG + chr5_4:9441725-9441744 None:intergenic 65.0%
AATAGGACGGGGAGTGGCGG+AGG + chr5_4:9441735-9441754 None:intergenic 65.0%
! CGGAAAGCGACGGCGGCGCG+TGG + chr5_4:9441764-9441783 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 9441499 9446619 9441499 ID=Msa0836060;Name=Msa0836060
chr5_4 mRNA 9441499 9446619 9441499 ID=Msa0836060-mRNA-1;Parent=Msa0836060;Name=Msa0836060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=199|1|1|1|1|1|8|291|224
chr5_4 exon 9441499 9441864 9441499 ID=Msa0836060-mRNA-1:exon:4143;Parent=Msa0836060-mRNA-1
chr5_4 exon 9441955 9442012 9441955 ID=Msa0836060-mRNA-1:exon:4142;Parent=Msa0836060-mRNA-1
chr5_4 exon 9442194 9442309 9442194 ID=Msa0836060-mRNA-1:exon:4141;Parent=Msa0836060-mRNA-1
chr5_4 exon 9443448 9443500 9443448 ID=Msa0836060-mRNA-1:exon:4140;Parent=Msa0836060-mRNA-1
chr5_4 exon 9443686 9443734 9443686 ID=Msa0836060-mRNA-1:exon:4139;Parent=Msa0836060-mRNA-1
chr5_4 exon 9444472 9444536 9444472 ID=Msa0836060-mRNA-1:exon:4138;Parent=Msa0836060-mRNA-1
chr5_4 exon 9444658 9444745 9444658 ID=Msa0836060-mRNA-1:exon:4137;Parent=Msa0836060-mRNA-1
chr5_4 exon 9446250 9446619 9446250 ID=Msa0836060-mRNA-1:exon:4136;Parent=Msa0836060-mRNA-1
chr5_4 five_prime_UTR 9446421 9446619 9446421 ID=Msa0836060-mRNA-1:five_prime_utr;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9446250 9446420 9446250 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9444658 9444745 9444658 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9444472 9444536 9444472 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9443686 9443734 9443686 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9443448 9443500 9443448 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9442194 9442309 9442194 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9441955 9442012 9441955 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 CDS 9441790 9441864 9441790 ID=Msa0836060-mRNA-1:cds;Parent=Msa0836060-mRNA-1
chr5_4 three_prime_UTR 9441499 9441789 9441499 ID=Msa0836060-mRNA-1:three_prime_utr;Parent=Msa0836060-mRNA-1
Gene Sequence

>Msa0836060

ATGGACTCGCTCACTCTTCCTTTCCCTACACTCTCCTCCGCCACTCCCCGTCCTATTTTCAATCCACGCGCCGCCGTCGCTTTCCGATGCTTCCACTCCTCCGCTCATTTTTCAAAGCTTCGTGGCTCCCCGCTTTTTGCTGCTAACACTCTCACCGCTAATTCCGTTCCGCCAAAAAATGGGGTCTACACCGTCGGTGACTTTATGACAAAGAAAGATGAGTTACATACAGTGAAGCCCACAACAACTGTGGATGAAGCTTTGGATTCTCTTGTTGAGCACAGAATAACTGGTTTTCCCGTGATTGATGATAACTGGAAGCTAGTTGGTGTTGTTTCAGATTACGACCTGTTAGCTCTGGACTCCATTTCAGGTCAAGGGCAAACAGATAACAGCTTGTTTCCAGATGTTGACAGTACTTGGAAAACTTTCAATGAAGTTCAGAGATTGCTGAGTAAGACCAACGGGAAGGTGATCGGTGAATTGATGACCACTGCTCCTATGGTTGTTCGCGAGACCACCAATCTTGAGGATGCTGCTAGATTGTTGCTGGAAACAAAATTTCGACGCCTTCCAGTTGTAGATGCTGAGGGTAGATTGGTTGGGATTATCACTAGAGGAAATGTTGTAAGAGCTGCGCTTCAAATGAAACGAGACAGCCAAAAGAAAGCATGA

Protein sequence

>Msa0836060

MDSLTLPFPTLSSATPRPIFNPRAAVAFRCFHSSAHFSKLRGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFPVIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQRLLSKTNGKVIGELMTTAPMVVRETTNLEDAARLLLETKFRRLPVVDAEGRLVGIITRGNVVRAALQMKRDSQKKA*