AlfalfaGEDB | Msa1328730

M. sativa cultivar zhongmu-4 / Msa1328730

KEGG: K16616
GO: GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071840
PFAM: PF00022.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328730	KEH20258.1	95.872	218	7	1	1	216	234	451	2.40e-148	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328730	sp\|Q9FKT0\|ARP8_ARATH	73.853	218	54	2	1	215	229	446	2.58e-113	335

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328730	A0A072TTT0	95.872	218	7	1	1	216	234	451	1.15e-148	431

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0085720	Msa1328730	0.807292	5.426893e-50	-8.615850e-47
Msa0241740	Msa1328730	0.800253	1.571984e-48	-8.615850e-47
Msa0365490	Msa1328730	0.814780	1.294340e-51	-8.615850e-47
Msa0388030	Msa1328730	-0.803058	4.178742e-49	-8.615850e-47
Msa0464900	Msa1328730	0.801598	8.347109e-49	-8.615850e-47
Msa0505060	Msa1328730	0.835256	1.865504e-56	-8.615850e-47
Msa0587190	Msa1328730	0.809290	2.035756e-50	-8.615850e-47
Msa0679550	Msa1328730	0.819885	9.181055e-53	-8.615850e-47
Msa0715110	Msa1328730	0.823765	1.161067e-53	-8.615850e-47
Msa0791910	Msa1328730	0.804793	1.821690e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328730	MtrunA17_Chr8g0369101	95.872	218	7	1	1	216	234	451	7.90e-152	431
Msa1328730	MtrunA17_Chr3g0080021	78.636	220	43	3	1	216	226	445	1.37e-121	353
Msa1328730	MtrunA17_Chr2g0278591	32.599	227	132	7	2	215	130	348	3.47e-27	107
Msa1328730	MtrunA17_Chr7g0223901	31.111	225	138	7	2	215	130	348	1.52e-26	105
Msa1328730	MtrunA17_Chr3g0129641	31.718	227	134	7	2	215	130	348	2.13e-26	105
Msa1328730	MtrunA17_Chr6g0448881	29.956	227	138	7	2	215	130	348	1.10e-25	103
Msa1328730	MtrunA17_Chr2g0328091	30.396	227	137	7	2	215	130	348	4.32e-25	101
Msa1328730	MtrunA17_Chr1g0175391	30.837	227	136	7	2	215	130	348	4.64e-25	101
Msa1328730	MtrunA17_Chr7g0258721	30.837	227	136	7	2	215	130	348	5.62e-25	101
Msa1328730	MtrunA17_Chr7g0224401	28.452	239	142	9	13	229	142	373	4.45e-17	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328730	AT5G56180.3	73.853	218	54	2	1	215	97	314	8.72e-117	337
Msa1328730	AT5G56180.1	73.853	218	54	2	1	215	229	446	2.62e-114	335
Msa1328730	AT5G56180.2	75.735	136	30	2	1	133	229	364	6.07e-65	206
Msa1328730	AT2G42100.1	31.132	212	131	6	13	215	144	349	1.04e-26	106
Msa1328730	AT5G09810.1	32.599	227	132	7	2	215	130	348	1.34e-26	105
Msa1328730	AT2G42090.1	29.778	225	141	7	2	215	119	337	2.11e-26	105
Msa1328730	AT3G12110.1	31.111	225	138	7	2	215	130	348	5.53e-26	104
Msa1328730	AT3G53750.1	30.222	225	140	7	2	215	130	348	3.93e-25	102
Msa1328730	AT3G53750.2	30.222	225	140	7	2	215	130	348	3.93e-25	102
Msa1328730	AT2G37620.1	30.222	225	140	7	2	215	130	348	3.93e-25	102

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Find 69 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTAAAGTGATGCGAA+AGG	0.611089	8_4:-46697198	Msa1328730:CDS
AACAAACTGGATGCTTATAA+AGG	0.341909	8_4:+46695541	None:intergenic
AAGACTGCTGTCTTATCGGG+AGG	0.538740	8_4:-46696243	Msa1328730:CDS
AAGGTGGGTGTGGAGGTTGT+TGG	0.433202	8_4:-46697179	Msa1328730:CDS
AATAATACACATTACTGAGT+CGG	0.612263	8_4:+46695410	None:intergenic
AATTAGCAGGCGGCAGTGAT+TGG	0.421207	8_4:-46696269	Msa1328730:CDS
ACTTACACCCCAGCAAGACG+TGG	0.673994	8_4:+46696714	None:intergenic
AGACTAAATCCACAAGCTGA+TGG	0.519654	8_4:-46695447	Msa1328730:three_prime_UTR
AGACTGCTGTCTTATCGGGA+GGG	0.602707	8_4:-46696242	Msa1328730:CDS
AGAGTCATCCCTCCTCCACA+CGG	0.670384	8_4:-46696008	Msa1328730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGCTTAACAATACATCTC+TGG	-	chr8_4:46695954-46695973	Msa1328730:intron	30.0%
TCAGTTACATGATAAAAGGA+GGG	+	chr8_4:46696176-46696195	None:intergenic	30.0%
ATCAGTTACATGATAAAAGG+AGG	+	chr8_4:46696177-46696196	None:intergenic	30.0%
AATAACAAAACCGAAGAGAT+TGG	+	chr8_4:46696446-46696465	None:intergenic	30.0%
CTCAAAAGAGAAATTAGTTC+GGG	+	chr8_4:46696854-46696873	None:intergenic	30.0%
GCTCAAAAGAGAAATTAGTT+CGG	+	chr8_4:46696855-46696874	None:intergenic	30.0%
TTATGAATTCGATGCAGTAA+TGG	+	chr8_4:46697186-46697205	None:intergenic	30.0%
ATAGATTATAACACAAGAGG+CGG	+	chr8_4:46697227-46697246	None:intergenic	30.0%
AATGCATATATGCTCAATCA+GGG	+	chr8_4:46697306-46697325	None:intergenic	30.0%
AAAAAGCAAATGTTGTGACT+AGG	+	chr8_4:46697618-46697637	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	46695352	46699210	46695352	ID=Msa1328730;Name=Msa1328730
chr8_4	mRNA	46695352	46699210	46695352	ID=Msa1328730-mRNA-1;Parent=Msa1328730;Name=Msa1328730-mRNA-1;_AED=0.07;_eAED=0.10;_QI=40\|0.5\|0.42\|1\|0.83\|0.71\|7\|350\|235
chr8_4	exon	46695352	46695760	46695352	ID=Msa1328730-mRNA-1:exon:13377;Parent=Msa1328730-mRNA-1
chr8_4	exon	46695970	46696086	46695970	ID=Msa1328730-mRNA-1:exon:13376;Parent=Msa1328730-mRNA-1
chr8_4	exon	46696217	46696350	46696217	ID=Msa1328730-mRNA-1:exon:13375;Parent=Msa1328730-mRNA-1
chr8_4	exon	46696720	46696865	46696720	ID=Msa1328730-mRNA-1:exon:13374;Parent=Msa1328730-mRNA-1
chr8_4	exon	46697082	46697224	46697082	ID=Msa1328730-mRNA-1:exon:13373;Parent=Msa1328730-mRNA-1
chr8_4	exon	46698648	46698723	46698648	ID=Msa1328730-mRNA-1:exon:13372;Parent=Msa1328730-mRNA-1
chr8_4	exon	46699138	46699210	46699138	ID=Msa1328730-mRNA-1:exon:13371;Parent=Msa1328730-mRNA-1
chr8_4	five_prime_UTR	46699171	46699210	46699171	ID=Msa1328730-mRNA-1:five_prime_utr;Parent=Msa1328730-mRNA-1
chr8_4	CDS	46699138	46699170	46699138	ID=Msa1328730-mRNA-1:cds;Parent=Msa1328730-mRNA-1
chr8_4	CDS	46698648	46698723	46698648	ID=Msa1328730-mRNA-1:cds;Parent=Msa1328730-mRNA-1
chr8_4	CDS	46697082	46697224	46697082	ID=Msa1328730-mRNA-1:cds;Parent=Msa1328730-mRNA-1
chr8_4	CDS	46696720	46696865	46696720	ID=Msa1328730-mRNA-1:cds;Parent=Msa1328730-mRNA-1
chr8_4	CDS	46696217	46696350	46696217	ID=Msa1328730-mRNA-1:cds;Parent=Msa1328730-mRNA-1
chr8_4	CDS	46695970	46696086	46695970	ID=Msa1328730-mRNA-1:cds;Parent=Msa1328730-mRNA-1
chr8_4	CDS	46695702	46695760	46695702	ID=Msa1328730-mRNA-1:cds;Parent=Msa1328730-mRNA-1
chr8_4	three_prime_UTR	46695352	46695701	46695352	ID=Msa1328730-mRNA-1:three_prime_utr;Parent=Msa1328730-mRNA-1

Gene Sequence

>Msa1328730

ATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTTATTGCTGCAAATCAAACTTCTGGAATAGCTGTTAATATAGGCTTTCAAGTTACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTTGGGCTTGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAACTTATATTTTGAATCTTTGTACACCGTTCGCACACTGAAAGAAAAGCTATGCTATGTTGCCTATGACTATGAAGCTGAGATATTGAAAGATACATATGCATCATTTGAAGCCGTTGAAGGGAAGTTTACACTCTCAAAAGAGCGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTGCGAGCAATGAGTTTGCACCATGCCATAGCTCTCTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGCGGCAGTGATTGGTTTAAGACTGCTGTCTTATCGGGAGGGTCTGCATGTTTACCAGGGTTAGCTGAGAGGTTAGAGAAGGAACTTCATTCATTACTTCCACCTTATATGTCAAATGGAATCAGAGTCATCCCTCCTCCACACGGTGCAGATACTGCATGGTTTGGTGCAAAGCTTATTGGCATTGAGTACCTTTCCTCCCCCCTGATGCATAACAAAGAAGCAATTCCGTCAGAAGTCTAA

Protein sequence

>Msa1328730

MNVPAVCALNQATFIAANQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLYTVRTLKEKLCYVAYDYEAEILKDTYASFEAVEGKFTLSKERFQTGEILFQPRLAGVRAMSLHHAIALCMDHCHSAELAGGSDWFKTAVLSGGSACLPGLAERLEKELHSLLPPYMSNGIRVIPPPHGADTAWFGAKLIGIEYLSSPLMHNKEAIPSEV*