Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0791910 | XP_003609890.1 | 87.826 | 345 | 23 | 3 | 1 | 330 | 1 | 341 | 1.98e-171 | 489 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0791910 | sp|Q9C5W0|DGAT3_ARATH | 36.813 | 364 | 169 | 14 | 1 | 318 | 1 | 349 | 2.24e-33 | 129 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0791910 | G7JR20 | 87.826 | 345 | 23 | 3 | 1 | 330 | 1 | 341 | 9.45e-172 | 489 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011180 | Msa0791910 | 0.801406 | 9.139555e-49 | -8.615850e-47 |
Msa0011720 | Msa0791910 | 0.846286 | 2.389482e-59 | -8.615850e-47 |
Msa0047940 | Msa0791910 | 0.872398 | 3.278459e-67 | -8.615850e-47 |
Msa0048000 | Msa0791910 | 0.803818 | 2.907049e-49 | -8.615850e-47 |
Msa0050430 | Msa0791910 | 0.821189 | 4.607500e-53 | -8.615850e-47 |
Msa0050730 | Msa0791910 | 0.856627 | 2.830999e-62 | -8.615850e-47 |
Msa0050760 | Msa0791910 | 0.858078 | 1.054033e-62 | -8.615850e-47 |
Msa0060600 | Msa0791910 | 0.834385 | 3.089913e-56 | -8.615850e-47 |
Msa0079250 | Msa0791910 | 0.806709 | 7.212391e-50 | -8.615850e-47 |
Msa0094100 | Msa0791910 | 0.830179 | 3.397567e-55 | -8.615850e-47 |
Msa0095380 | Msa0791910 | 0.813843 | 2.084850e-51 | -8.615850e-47 |
Msa0105340 | Msa0791910 | 0.835996 | 1.212177e-56 | -8.615850e-47 |
Msa0105420 | Msa0791910 | 0.808549 | 2.933019e-50 | -8.615850e-47 |
Msa0105700 | Msa0791910 | 0.810434 | 1.154744e-50 | -8.615850e-47 |
Msa0120340 | Msa0791910 | 0.810230 | 1.278248e-50 | -8.615850e-47 |
Msa0607290 | Msa0791910 | -0.821522 | 3.860445e-53 | -8.615850e-47 |
Msa0617830 | Msa0791910 | 0.805734 | 1.156883e-49 | -8.615850e-47 |
Msa0620810 | Msa0791910 | 0.810780 | 9.721652e-51 | -8.615850e-47 |
Msa0631990 | Msa0791910 | 0.817740 | 2.818844e-52 | -8.615850e-47 |
Msa0638280 | Msa0791910 | 0.820229 | 7.659093e-53 | -8.615850e-47 |
Msa0638320 | Msa0791910 | 0.812699 | 3.717934e-51 | -8.615850e-47 |
Msa0646390 | Msa0791910 | 0.802695 | 4.966270e-49 | -8.615850e-47 |
Msa0656680 | Msa0791910 | 0.802007 | 6.880106e-49 | -8.615850e-47 |
Msa0660300 | Msa0791910 | 0.812313 | 4.514108e-51 | -8.615850e-47 |
Msa0669200 | Msa0791910 | 0.807667 | 4.520254e-50 | -8.615850e-47 |
Msa0669850 | Msa0791910 | 0.826469 | 2.667281e-54 | -8.615850e-47 |
Msa0670660 | Msa0791910 | 0.834384 | 3.092379e-56 | -8.615850e-47 |
Msa0670980 | Msa0791910 | 0.801836 | 7.461803e-49 | -8.615850e-47 |
Msa0677270 | Msa0791910 | 0.805389 | 1.366994e-49 | -8.615850e-47 |
Msa0692110 | Msa0791910 | 0.824711 | 6.959879e-54 | -8.615850e-47 |
Msa0694250 | Msa0791910 | 0.810894 | 9.186772e-51 | -8.615850e-47 |
Msa0696420 | Msa0791910 | 0.802498 | 5.451943e-49 | -8.615850e-47 |
Msa0713460 | Msa0791910 | 0.811047 | 8.509006e-51 | -8.615850e-47 |
Msa0714340 | Msa0791910 | 0.814990 | 1.162845e-51 | -8.615850e-47 |
Msa0715110 | Msa0791910 | 0.848435 | 6.138996e-60 | -8.615850e-47 |
Msa0715150 | Msa0791910 | 0.806103 | 9.679617e-50 | -8.615850e-47 |
Msa0724560 | Msa0791910 | 0.813379 | 2.637533e-51 | -8.615850e-47 |
Msa0726610 | Msa0791910 | 0.820311 | 7.336618e-53 | -8.615850e-47 |
Msa0734120 | Msa0791910 | 0.814248 | 1.697253e-51 | -8.615850e-47 |
Msa0743260 | Msa0791910 | 0.824391 | 8.279526e-54 | -8.615850e-47 |
Msa0756310 | Msa0791910 | 0.836938 | 6.977233e-57 | -8.615850e-47 |
Msa0757050 | Msa0791910 | 0.805847 | 1.095504e-49 | -8.615850e-47 |
Msa0757080 | Msa0791910 | 0.800490 | 1.406601e-48 | -8.615850e-47 |
Msa0775260 | Msa0791910 | 0.859214 | 4.828151e-63 | -8.615850e-47 |
Msa0787720 | Msa0791910 | 0.802285 | 6.033592e-49 | -8.615850e-47 |
Msa0789270 | Msa0791910 | 0.827582 | 1.444534e-54 | -8.615850e-47 |
Msa0789280 | Msa0791910 | 0.828614 | 8.152508e-55 | -8.615850e-47 |
Msa0789290 | Msa0791910 | 0.826189 | 3.108954e-54 | -8.615850e-47 |
Msa0789300 | Msa0791910 | 0.823267 | 1.518275e-53 | -8.615850e-47 |
Msa0791910 | Msa0792090 | 0.806047 | 9.941506e-50 | -8.615850e-47 |
Msa0791910 | Msa0794320 | 0.803972 | 2.700390e-49 | -8.615850e-47 |
Msa0791910 | Msa0798070 | 0.841735 | 3.967160e-58 | -8.615850e-47 |
Msa0791910 | Msa0812660 | 0.802214 | 6.239845e-49 | -8.615850e-47 |
Msa0791910 | Msa0835730 | 0.834439 | 2.994890e-56 | -8.615850e-47 |
Msa0791910 | Msa0836620 | 0.822454 | 2.348266e-53 | -8.615850e-47 |
Msa0791910 | Msa0836630 | 0.818554 | 1.844727e-52 | -8.615850e-47 |
Msa0791910 | Msa0846810 | 0.812785 | 3.560210e-51 | -8.615850e-47 |
Msa0791910 | Msa0847200 | 0.819426 | 1.168496e-52 | -8.615850e-47 |
Msa0791910 | Msa0848900 | 0.809404 | 1.924356e-50 | -8.615850e-47 |
Msa0791910 | Msa0853170 | 0.850826 | 1.320753e-60 | -8.615850e-47 |
Msa0791910 | Msa0874500 | 0.805185 | 1.507877e-49 | -8.615850e-47 |
Msa0791910 | Msa0874570 | 0.807101 | 5.957902e-50 | -8.615850e-47 |
Msa0791910 | Msa0890250 | 0.800818 | 1.205693e-48 | -8.615850e-47 |
Msa0791910 | Msa0891600 | -0.804392 | 2.207867e-49 | -8.615850e-47 |
Msa0791910 | Msa0893810 | 0.836855 | 7.325463e-57 | -8.615850e-47 |
Msa0791910 | Msa0899230 | 0.814386 | 1.581939e-51 | -8.615850e-47 |
Msa0791910 | Msa0907700 | 0.810769 | 9.774960e-51 | -8.615850e-47 |
Msa0791910 | Msa0908170 | 0.860881 | 1.515900e-63 | -8.615850e-47 |
Msa0791910 | Msa0910980 | -0.828517 | 8.601957e-55 | -8.615850e-47 |
Msa0791910 | Msa0927670 | 0.803674 | 3.114829e-49 | -8.615850e-47 |
Msa0791910 | Msa0937670 | 0.807107 | 5.941879e-50 | -8.615850e-47 |
Msa0791910 | Msa0959010 | 0.820351 | 7.181308e-53 | -8.615850e-47 |
Msa0791910 | Msa0960160 | 0.815753 | 7.864921e-52 | -8.615850e-47 |
Msa0791910 | Msa0964680 | 0.802129 | 6.494086e-49 | -8.615850e-47 |
Msa0791910 | Msa0976250 | 0.816889 | 4.380937e-52 | -8.615850e-47 |
Msa0791910 | Msa0992490 | -0.823396 | 1.416439e-53 | -8.615850e-47 |
Msa0791910 | Msa0993530 | 0.842009 | 3.359493e-58 | -8.615850e-47 |
Msa0791910 | Msa1000940 | 0.804427 | 2.171461e-49 | -8.615850e-47 |
Msa0791910 | Msa1015060 | 0.881672 | 1.976532e-70 | -8.615850e-47 |
Msa0791910 | Msa1026760 | 0.839433 | 1.589193e-57 | -8.615850e-47 |
Msa0791910 | Msa1026790 | 0.834564 | 2.786510e-56 | -8.615850e-47 |
Msa0791910 | Msa1047720 | 0.804523 | 2.073571e-49 | -8.615850e-47 |
Msa0791910 | Msa1056640 | 0.858997 | 5.606444e-63 | -8.615850e-47 |
Msa0791910 | Msa1072460 | -0.816595 | 5.098980e-52 | -8.615850e-47 |
Msa0791910 | Msa1080770 | 0.800744 | 1.248446e-48 | -8.615850e-47 |
Msa0791910 | Msa1087470 | 0.869883 | 2.217132e-66 | -8.615850e-47 |
Msa0791910 | Msa1087530 | 0.819392 | 1.189541e-52 | -8.615850e-47 |
Msa0791910 | Msa1089530 | 0.802890 | 4.525661e-49 | -8.615850e-47 |
Msa0791910 | Msa1092090 | 0.821721 | 3.474008e-53 | -8.615850e-47 |
Msa0791910 | Msa1092820 | 0.894082 | 3.443847e-75 | -8.615850e-47 |
Msa0791910 | Msa1097380 | 0.809212 | 2.115670e-50 | -8.615850e-47 |
Msa0791910 | Msa1109570 | 0.805649 | 1.205287e-49 | -8.615850e-47 |
Msa0791910 | Msa1113200 | 0.815009 | 1.151270e-51 | -8.615850e-47 |
Msa0791910 | Msa1116690 | 0.838063 | 3.592559e-57 | -8.615850e-47 |
Msa0791910 | Msa1154160 | 0.820451 | 6.813674e-53 | -8.615850e-47 |
Msa0791910 | Msa1162550 | -0.800061 | 1.719495e-48 | -8.615850e-47 |
Msa0791910 | Msa1175330 | 0.800649 | 1.305244e-48 | -8.615850e-47 |
Msa0791910 | Msa1185540 | 0.821692 | 3.526490e-53 | -8.615850e-47 |
Msa0791910 | Msa1206020 | 0.822229 | 2.648536e-53 | -8.615850e-47 |
Msa0791910 | Msa1211070 | 0.813683 | 2.260565e-51 | -8.615850e-47 |
Msa0791910 | Msa1218650 | 0.805361 | 1.385418e-49 | -8.615850e-47 |
Msa0791910 | Msa1219430 | 0.999408 | 2.659154e-309 | -8.615850e-47 |
Msa0791910 | Msa1221900 | 0.820587 | 6.341010e-53 | -8.615850e-47 |
Msa0791910 | Msa1228310 | 0.802972 | 4.351817e-49 | -8.615850e-47 |
Msa0791910 | Msa1229660 | 0.827492 | 1.518504e-54 | -8.615850e-47 |
Msa0791910 | Msa1233500 | 0.814691 | 1.353951e-51 | -8.615850e-47 |
Msa0791910 | Msa1235020 | 0.808395 | 3.163128e-50 | -8.615850e-47 |
Msa0791910 | Msa1235630 | 0.815757 | 7.850278e-52 | -8.615850e-47 |
Msa0791910 | Msa1237030 | 0.839432 | 1.590139e-57 | -8.615850e-47 |
Msa0791910 | Msa1238490 | 0.806678 | 7.318904e-50 | -8.615850e-47 |
Msa0791910 | Msa1252070 | 0.803660 | 3.135187e-49 | -8.615850e-47 |
Msa0791910 | Msa1258380 | -0.804624 | 1.975374e-49 | -8.615850e-47 |
Msa0791910 | Msa1265070 | 0.843718 | 1.179550e-58 | -8.615850e-47 |
Msa0791910 | Msa1267840 | 0.802848 | 4.616459e-49 | -8.615850e-47 |
Msa0791910 | Msa1271200 | 0.803572 | 3.270645e-49 | -8.615850e-47 |
Msa0791910 | Msa1280130 | 0.834710 | 2.560804e-56 | -8.615850e-47 |
Msa0791910 | Msa1282920 | 0.800185 | 1.622733e-48 | -8.615850e-47 |
Msa0791910 | Msa1300350 | -0.810127 | 1.345323e-50 | -8.615850e-47 |
Msa0791910 | Msa1303160 | 0.800375 | 1.484218e-48 | -8.615850e-47 |
Msa0791910 | Msa1306750 | 0.812908 | 3.346202e-51 | -8.615850e-47 |
Msa0791910 | Msa1307740 | 0.801908 | 7.210104e-49 | -8.615850e-47 |
Msa0791910 | Msa1308590 | 0.817658 | 2.941428e-52 | -8.615850e-47 |
Msa0791910 | Msa1310340 | 0.815526 | 8.837624e-52 | -8.615850e-47 |
Msa0791910 | Msa1315870 | 0.806465 | 8.120488e-50 | -8.615850e-47 |
Msa0791910 | Msa1327760 | 0.804381 | 2.219856e-49 | -8.615850e-47 |
Msa0791910 | Msa1328730 | 0.804793 | 1.821690e-49 | -8.615850e-47 |
Msa0791910 | Msa1328850 | 0.820136 | 8.044959e-53 | -8.615850e-47 |
Msa0791910 | Msa1337730 | 0.832836 | 7.530212e-56 | -8.615850e-47 |
Msa0791910 | Msa1340020 | 0.810080 | 1.376789e-50 | -8.615850e-47 |
Msa0791910 | Msa1362510 | 0.815172 | 1.059065e-51 | -8.615850e-47 |
Msa0791910 | Msa1369530 | 0.840873 | 6.690691e-58 | -8.615850e-47 |
Msa0791910 | Msa1370650 | 0.822875 | 1.874408e-53 | -8.615850e-47 |
Msa0791910 | Msa1386430 | 0.960605 | 9.536041e-119 | -8.615850e-47 |
Msa0791910 | Msa1386520 | 0.811939 | 5.448105e-51 | -8.615850e-47 |
Msa0791910 | Msa1390770 | 0.810628 | 1.048742e-50 | -8.615850e-47 |
Msa0791910 | Msa1395530 | 0.800013 | 1.758443e-48 | -8.615850e-47 |
Msa0791910 | Msa1404540 | 0.822583 | 2.192147e-53 | -8.615850e-47 |
Msa0791910 | Msa1404670 | 0.820913 | 5.335480e-53 | -8.615850e-47 |
Msa0791910 | Msa1408790 | 0.864372 | 1.275409e-64 | -8.615850e-47 |
Msa0791910 | Msa1419110 | 0.808847 | 2.532457e-50 | -8.615850e-47 |
Msa0791910 | Msa1431060 | 0.819560 | 1.089244e-52 | -8.615850e-47 |
Msa0791910 | Msa1432640 | 0.825563 | 4.379553e-54 | -8.615850e-47 |
Msa0791910 | Msa1436040 | 0.864368 | 1.278879e-64 | -8.615850e-47 |
Msa0791910 | Msa1439230 | 0.815969 | 7.038248e-52 | -8.615850e-47 |
Msa0791910 | Msa1440600 | 0.859859 | 3.089369e-63 | -8.615850e-47 |
Msa0791910 | Msa1444250 | -0.805531 | 1.276241e-49 | -8.615850e-47 |
Msa0791910 | Msa1454110 | 0.804062 | 2.587315e-49 | -8.615850e-47 |
Msa0791910 | Msa1455390 | 0.821802 | 3.326574e-53 | -8.615850e-47 |
Msa0791910 | Msa1461250 | -0.827078 | 1.908267e-54 | -8.615850e-47 |
Msa0143080 | Msa0791910 | 0.807560 | 4.762953e-50 | -8.615850e-47 |
Msa0151690 | Msa0791910 | 0.848530 | 5.778548e-60 | -8.615850e-47 |
Msa0152170 | Msa0791910 | 0.811045 | 8.519707e-51 | -8.615850e-47 |
Msa0168100 | Msa0791910 | 0.806568 | 7.724093e-50 | -8.615850e-47 |
Msa0172350 | Msa0791910 | 0.801639 | 8.187774e-49 | -8.615850e-47 |
Msa0183590 | Msa0791910 | 0.808666 | 2.768758e-50 | -8.615850e-47 |
Msa0188630 | Msa0791910 | 0.835245 | 1.876912e-56 | -8.615850e-47 |
Msa0193650 | Msa0791910 | 0.804852 | 1.770420e-49 | -8.615850e-47 |
Msa0208630 | Msa0791910 | 0.836709 | 7.982905e-57 | -8.615850e-47 |
Msa0217400 | Msa0791910 | 0.802069 | 6.682021e-49 | -8.615850e-47 |
Msa0222920 | Msa0791910 | 0.814793 | 1.285552e-51 | -8.615850e-47 |
Msa0223100 | Msa0791910 | 0.802054 | 6.730118e-49 | -8.615850e-47 |
Msa0223290 | Msa0791910 | 0.841782 | 3.856226e-58 | -8.615850e-47 |
Msa0223380 | Msa0791910 | 0.844004 | 9.888826e-59 | -8.615850e-47 |
Msa0224730 | Msa0791910 | 0.802265 | 6.088945e-49 | -8.615850e-47 |
Msa0227510 | Msa0791910 | 0.807619 | 4.626146e-50 | -8.615850e-47 |
Msa0230770 | Msa0791910 | 0.802358 | 5.825802e-49 | -8.615850e-47 |
Msa0236980 | Msa0791910 | 0.824838 | 6.496772e-54 | -8.615850e-47 |
Msa0365490 | Msa0791910 | 0.842793 | 2.081407e-58 | -8.615850e-47 |
Msa0377530 | Msa0791910 | 0.841820 | 3.768666e-58 | -8.615850e-47 |
Msa0380040 | Msa0791910 | 0.852581 | 4.203932e-61 | -8.615850e-47 |
Msa0389810 | Msa0791910 | 0.803469 | 3.435338e-49 | -8.615850e-47 |
Msa0392070 | Msa0791910 | 0.806133 | 9.537373e-50 | -8.615850e-47 |
Msa0392710 | Msa0791910 | 0.861907 | 7.376686e-64 | -8.615850e-47 |
Msa0426330 | Msa0791910 | 0.817371 | 3.413619e-52 | -8.615850e-47 |
Msa0426810 | Msa0791910 | 0.804371 | 2.230664e-49 | -8.615850e-47 |
Msa0429290 | Msa0791910 | 0.837671 | 4.529510e-57 | -8.615850e-47 |
Msa0430820 | Msa0791910 | 0.802308 | 5.966643e-49 | -8.615850e-47 |
Msa0431830 | Msa0791910 | 0.802146 | 6.442659e-49 | -8.615850e-47 |
Msa0437710 | Msa0791910 | 0.801639 | 8.188375e-49 | -8.615850e-47 |
Msa0442850 | Msa0791910 | 0.830005 | 3.746501e-55 | -8.615850e-47 |
Msa0449760 | Msa0791910 | 0.839716 | 1.341240e-57 | -8.615850e-47 |
Msa0449820 | Msa0791910 | 0.809220 | 2.107275e-50 | -8.615850e-47 |
Msa0449830 | Msa0791910 | 0.820506 | 6.618344e-53 | -8.615850e-47 |
Msa0457010 | Msa0791910 | 0.829199 | 5.884147e-55 | -8.615850e-47 |
Msa0458440 | Msa0791910 | 0.842515 | 2.466906e-58 | -8.615850e-47 |
Msa0464900 | Msa0791910 | 0.816040 | 6.787639e-52 | -8.615850e-47 |
Msa0468130 | Msa0791910 | 0.808536 | 2.951381e-50 | -8.615850e-47 |
Msa0473240 | Msa0791910 | 0.844689 | 6.470286e-59 | -8.615850e-47 |
Msa0475580 | Msa0791910 | 0.846055 | 2.761164e-59 | -8.615850e-47 |
Msa0480320 | Msa0791910 | 0.823708 | 1.197799e-53 | -8.615850e-47 |
Msa0480600 | Msa0791910 | 0.822007 | 2.982291e-53 | -8.615850e-47 |
Msa0482190 | Msa0791910 | -0.807636 | 4.589367e-50 | -8.615850e-47 |
Msa0252180 | Msa0791910 | 0.804011 | 2.650753e-49 | -8.615850e-47 |
Msa0260810 | Msa0791910 | 0.806275 | 8.901396e-50 | -8.615850e-47 |
Msa0265820 | Msa0791910 | 0.836281 | 1.025980e-56 | -8.615850e-47 |
Msa0266000 | Msa0791910 | -0.802894 | 4.517969e-49 | -8.615850e-47 |
Msa0270270 | Msa0791910 | 0.818782 | 1.637956e-52 | -8.615850e-47 |
Msa0292180 | Msa0791910 | 0.826468 | 2.667878e-54 | -8.615850e-47 |
Msa0296760 | Msa0791910 | 0.829947 | 3.869626e-55 | -8.615850e-47 |
Msa0302650 | Msa0791910 | 0.823420 | 1.398481e-53 | -8.615850e-47 |
Msa0313990 | Msa0791910 | 0.808039 | 3.767791e-50 | -8.615850e-47 |
Msa0326670 | Msa0791910 | 0.819396 | 1.187042e-52 | -8.615850e-47 |
Msa0328210 | Msa0791910 | 0.813004 | 3.186979e-51 | -8.615850e-47 |
Msa0335040 | Msa0791910 | 0.848758 | 4.996409e-60 | -8.615850e-47 |
Msa0344830 | Msa0791910 | 0.829143 | 6.070123e-55 | -8.615850e-47 |
Msa0356960 | Msa0791910 | 0.809454 | 1.876804e-50 | -8.615850e-47 |
Msa0485500 | Msa0791910 | -0.800171 | 1.633505e-48 | -8.615850e-47 |
Msa0490300 | Msa0791910 | 0.820703 | 5.961291e-53 | -8.615850e-47 |
Msa0490350 | Msa0791910 | 0.821711 | 3.490940e-53 | -8.615850e-47 |
Msa0505060 | Msa0791910 | 0.850925 | 1.238350e-60 | -8.615850e-47 |
Msa0508200 | Msa0791910 | 0.830587 | 2.700490e-55 | -8.615850e-47 |
Msa0509970 | Msa0791910 | 0.800618 | 1.324152e-48 | -8.615850e-47 |
Msa0514000 | Msa0791910 | 0.824376 | 8.347527e-54 | -8.615850e-47 |
Msa0517490 | Msa0791910 | 0.844898 | 5.685225e-59 | -8.615850e-47 |
Msa0519220 | Msa0791910 | 0.839157 | 1.873894e-57 | -8.615850e-47 |
Msa0526710 | Msa0791910 | 0.804330 | 2.275585e-49 | -8.615850e-47 |
Msa0535030 | Msa0791910 | 0.832196 | 1.085128e-55 | -8.615850e-47 |
Msa0535060 | Msa0791910 | 0.833313 | 5.728378e-56 | -8.615850e-47 |
Msa0540070 | Msa0791910 | 0.803711 | 3.059708e-49 | -8.615850e-47 |
Msa0549740 | Msa0791910 | 0.818710 | 1.700595e-52 | -8.615850e-47 |
Msa0581920 | Msa0791910 | 0.803840 | 2.877472e-49 | -8.615850e-47 |
Msa0590660 | Msa0791910 | 0.815618 | 8.430166e-52 | -8.615850e-47 |
Msa0591060 | Msa0791910 | 0.812259 | 4.639503e-51 | -8.615850e-47 |
Msa0591770 | Msa0791910 | 0.830954 | 2.195228e-55 | -8.615850e-47 |
Msa0598460 | Msa0791910 | 0.812187 | 4.808482e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0791910 | MtrunA17_Chr4g0069441 | 87.826 | 345 | 23 | 3 | 1 | 330 | 1 | 341 | 1.82e-175 | 489 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0791910 | AT1G48300.1 | 36.813 | 364 | 169 | 14 | 1 | 318 | 1 | 349 | 2.28e-34 | 129 |
Find 85 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTCTGAATTACCTCAATT+AGG | 0.183509 | 5_3:-2998916 | Msa0791910:CDS |
TTCTCAAAAGCAAAGTATTA+TGG | 0.242646 | 5_3:-2997832 | Msa0791910:three_prime_UTR |
ACAATAACAACCACCGAAAA+AGG | 0.244300 | 5_3:-2999220 | Msa0791910:five_prime_UTR |
AATAATGCATCTCTTGTTAC+TGG | 0.282326 | 5_3:-2998320 | Msa0791910:CDS |
CTTCTGAATTACCTCAATTA+GGG | 0.289665 | 5_3:-2998915 | Msa0791910:CDS |
TTAAAATTCCCAATAAATAA+AGG | 0.304201 | 5_3:+2997768 | None:intergenic |
TGTTGATCTTAACATGGTTC+AGG | 0.306649 | 5_3:-2998093 | Msa0791910:CDS |
TCGGAGAGTGAGGGTGTCTA+TGG | 0.311445 | 5_3:-2999058 | Msa0791910:CDS |
GAATTCTGAATTCTCACATT+AGG | 0.340007 | 5_3:+2998116 | None:intergenic |
TACTTCACATCATCATGTTA+TGG | 0.361031 | 5_3:-2998357 | Msa0791910:CDS |
AATGAAACAAGAGAAGAAAA+AGG | 0.361365 | 5_3:-2998546 | Msa0791910:CDS |
TCCTAATCTACCTAATCTCT+TGG | 0.370750 | 5_3:-2998881 | Msa0791910:CDS |
ATATCATTGTTATTTGTCAT+TGG | 0.379429 | 5_3:-2997885 | Msa0791910:three_prime_UTR |
CCCAAGAGATTAGGTAGATT+AGG | 0.382872 | 5_3:+2998880 | None:intergenic |
CAAGAGTTTGAGAAGGTAGT+AGG | 0.384655 | 5_3:-2998197 | Msa0791910:CDS |
CACAAAGCCGGTGGATGAAT+TGG | 0.389932 | 5_3:-2998423 | Msa0791910:CDS |
CAATTCATCCACCGGCTTTG+TGG | 0.397930 | 5_3:+2998424 | None:intergenic |
GTCATCGTCATGGAGGTTTC+CGG | 0.398566 | 5_3:-2999150 | Msa0791910:exon |
TGTTGTTGGATGCAAGTGTA+TGG | 0.400360 | 5_3:-2998156 | Msa0791910:CDS |
GAAAGTAAGAGCAGGGGAGA+AGG | 0.401972 | 5_3:-2998582 | Msa0791910:CDS |
GAGAAGGTAGTAGGTGTTGA+AGG | 0.415252 | 5_3:-2998188 | Msa0791910:CDS |
TGAAGTTGACCCAAGAGATT+AGG | 0.430286 | 5_3:+2998871 | None:intergenic |
TGATGTGAAGTAGAATCTTC+AGG | 0.436223 | 5_3:+2998368 | None:intergenic |
GTTGATCTTAACATGGTTCA+GGG | 0.438643 | 5_3:-2998092 | Msa0791910:CDS |
GTGAGGGTGTCTATGGGGTC+TGG | 0.444353 | 5_3:-2999051 | Msa0791910:CDS |
CCAATGCAGAGAGGGTTACT+TGG | 0.447490 | 5_3:+2998047 | None:intergenic |
AGGAACAACGCCATGAGAAC+GGG | 0.451237 | 5_3:+2999080 | None:intergenic |
CGGAGAGTGAGGGTGTCTAT+GGG | 0.456153 | 5_3:-2999057 | Msa0791910:CDS |
TTCAATTCCAATTCATCCAC+CGG | 0.460806 | 5_3:+2998416 | None:intergenic |
GAAGGTGAAGGTGTTGTTGT+TGG | 0.461516 | 5_3:-2998170 | Msa0791910:CDS |
GTTCTCATGGCGTTGTTCCT+CGG | 0.476868 | 5_3:-2999077 | Msa0791910:CDS |
GAGCTAGAGAAAGTAAGAGC+AGG | 0.491556 | 5_3:-2998590 | Msa0791910:CDS |
GGGGTCTGGTTTCCATGATG+AGG | 0.505395 | 5_3:-2999037 | Msa0791910:CDS |
ACAACCTACATCTCCGGCGT+TGG | 0.506506 | 5_3:-2999111 | Msa0791910:CDS |
CCAAGTAACCCTCTCTGCAT+TGG | 0.508307 | 5_3:-2998047 | Msa0791910:CDS |
AAAGAGGATTGAAGTTTGCA+TGG | 0.512458 | 5_3:-2998258 | Msa0791910:CDS |
GGGTCTGGTTTCCATGATGA+GGG | 0.513644 | 5_3:-2999036 | Msa0791910:CDS |
TGGAGTTGGTCTAGAGGATG+TGG | 0.516198 | 5_3:-2998027 | Msa0791910:CDS |
CCTAATCTACCTAATCTCTT+GGG | 0.516487 | 5_3:-2998880 | Msa0791910:CDS |
GGGACTCACACCCGTTCTCA+TGG | 0.519048 | 5_3:-2999090 | Msa0791910:CDS |
AGGGGAGGATTACAAAGATG+TGG | 0.525816 | 5_3:-2997982 | Msa0791910:CDS |
TGAAGTAGAATCTTCAGGTA+TGG | 0.531707 | 5_3:+2998373 | None:intergenic |
AGTCCCAACGCCGGAGATGT+AGG | 0.532391 | 5_3:+2999107 | None:intergenic |
GACTATCACCGTCATCGTCA+TGG | 0.541050 | 5_3:-2999160 | Msa0791910:exon |
AACCCTCTCTGCATTGGAGT+TGG | 0.545052 | 5_3:-2998041 | Msa0791910:CDS |
CTGCATTGGAGTTGGTCTAG+AGG | 0.545072 | 5_3:-2998033 | Msa0791910:CDS |
AGCTAGAGAAAGTAAGAGCA+GGG | 0.546581 | 5_3:-2998589 | Msa0791910:CDS |
GTTGTTGGATGCAAGTGTAT+GGG | 0.547984 | 5_3:-2998155 | Msa0791910:CDS |
ATAATGCATCTCTTGTTACT+GGG | 0.551376 | 5_3:-2998319 | Msa0791910:CDS |
GCGTTGTTCCTCGGAGAGTG+AGG | 0.551861 | 5_3:-2999068 | Msa0791910:CDS |
TTATCCCTGCAGCTCAAAAG+AGG | 0.567917 | 5_3:-2998274 | Msa0791910:CDS |
ACTGCACGTGACCCTCATCA+TGG | 0.571166 | 5_3:+2999025 | None:intergenic |
AAGAGGATTGAAGTTTGCAT+GGG | 0.571804 | 5_3:-2998257 | Msa0791910:CDS |
GACCAACTCCAATGCAGAGA+GGG | 0.577245 | 5_3:+2998039 | None:intergenic |
TTGTTGGATGCAAGTGTATG+GGG | 0.578412 | 5_3:-2998154 | Msa0791910:CDS |
ATCACTTGACTCAGATTCAG+AGG | 0.579827 | 5_3:+2998463 | None:intergenic |
GAGGAACAACGCCATGAGAA+CGG | 0.580124 | 5_3:+2999079 | None:intergenic |
TGTACGACGGAGAACGGTGC+CGG | 0.582122 | 5_3:+2999131 | None:intergenic |
CGTTGTTCCTCGGAGAGTGA+GGG | 0.586366 | 5_3:-2999067 | Msa0791910:CDS |
TGTTGAGCAAACCCTAATTG+AGG | 0.593503 | 5_3:+2998904 | None:intergenic |
ATGTGGATACCATTGTGGCT+AGG | 0.594294 | 5_3:-2998010 | Msa0791910:CDS |
GTAGTAGGTGTTGAAGGTGA+AGG | 0.594774 | 5_3:-2998182 | Msa0791910:CDS |
GGATTACAAAGATGTGGGTA+CGG | 0.595227 | 5_3:-2997976 | Msa0791910:CDS |
GAATTCTGTTGATCTTAACA+TGG | 0.597830 | 5_3:-2998099 | Msa0791910:CDS |
GGGGAGGATTACAAAGATGT+GGG | 0.600350 | 5_3:-2997981 | Msa0791910:CDS |
CGTCGTACAACCTACATCTC+CGG | 0.602217 | 5_3:-2999117 | Msa0791910:CDS |
GTAGGTTGTACGACGGAGAA+CGG | 0.604515 | 5_3:+2999125 | None:intergenic |
TTACATGAATAGATGCAGGA+TGG | 0.624402 | 5_3:-2998632 | Msa0791910:intron |
GGAAACCTCCATGACGATGA+CGG | 0.624471 | 5_3:+2999152 | None:intergenic |
GCTAGAGAAAGTAAGAGCAG+GGG | 0.626526 | 5_3:-2998588 | Msa0791910:CDS |
TCTTCAGGTATGGATAGCAT+AGG | 0.636532 | 5_3:+2998383 | None:intergenic |
ATTGTTACAAGAGTTTGAGA+AGG | 0.637353 | 5_3:-2998204 | Msa0791910:CDS |
TTGTGATGTTGCCACAAAGC+CGG | 0.644781 | 5_3:-2998435 | Msa0791910:CDS |
TGATGTTGCCACAAAGCCGG+TGG | 0.654844 | 5_3:-2998432 | Msa0791910:CDS |
AGAGGATGTGGATACCATTG+TGG | 0.664578 | 5_3:-2998015 | Msa0791910:CDS |
GTTTAACAAAGAGACTAATG+TGG | 0.665239 | 5_3:-2998297 | Msa0791910:CDS |
ACGGGTGTGAGTCCCAACGC+CGG | 0.672451 | 5_3:+2999098 | None:intergenic |
GGAGAGTGAGGGTGTCTATG+GGG | 0.673193 | 5_3:-2999056 | Msa0791910:CDS |
ATAGACACCCTCACTCTCCG+AGG | 0.695788 | 5_3:+2999060 | None:intergenic |
AGACCAACTCCAATGCAGAG+AGG | 0.696753 | 5_3:+2998038 | None:intergenic |
CATGAATAGATGCAGGATGG+TGG | 0.702277 | 5_3:-2998629 | Msa0791910:intron |
ATTGTATATATGTGTCAGCG+TGG | 0.721744 | 5_3:-2997913 | Msa0791910:three_prime_UTR |
TATCACCGTCATCGTCATGG+AGG | 0.734877 | 5_3:-2999157 | Msa0791910:exon |
CGGAGATGTAGGTTGTACGA+CGG | 0.747412 | 5_3:+2999118 | None:intergenic |
TCAACTTCACCAAAGCCTCG+CGG | 0.751601 | 5_3:-2998857 | Msa0791910:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAAATAAAAGAAAAAG+GGG | + | chr5_3:2998174-2998193 | None:intergenic | 10.0% |
!!! | TAATACGTTTTTTTTTTTAA+AGG | + | chr5_3:2999193-2999212 | None:intergenic | 10.0% |
!! | TTAAAAAAAAAAACGTATTA+TGG | - | chr5_3:2999193-2999212 | Msa0791910:five_prime_UTR | 10.0% |
!!! | ATTTTATTTCCTTTATTTAT+TGG | - | chr5_3:2999216-2999235 | Msa0791910:five_prime_UTR | 10.0% |
!!! | TTTTATTTCCTTTATTTATT+GGG | - | chr5_3:2999217-2999236 | Msa0791910:five_prime_UTR | 10.0% |
!! | AATAAAAATAAAAGAAAAAG+GGG | + | chr5_3:2998174-2998193 | None:intergenic | 10.0% |
!!! | TAATACGTTTTTTTTTTTAA+AGG | + | chr5_3:2999193-2999212 | None:intergenic | 10.0% |
!! | TTAAAAAAAAAAACGTATTA+TGG | - | chr5_3:2999193-2999212 | Msa0791910:five_prime_UTR | 10.0% |
!!! | ATTTTATTTCCTTTATTTAT+TGG | - | chr5_3:2999216-2999235 | Msa0791910:five_prime_UTR | 10.0% |
!!! | TTTTATTTCCTTTATTTATT+GGG | - | chr5_3:2999217-2999236 | Msa0791910:five_prime_UTR | 10.0% |
!! | ATAAAAATAAAAGAAAAAGG+GGG | + | chr5_3:2998173-2998192 | None:intergenic | 15.0% |
!! | TTAAAATTCCCAATAAATAA+AGG | + | chr5_3:2999228-2999247 | None:intergenic | 15.0% |
!! | ATAAAAATAAAAGAAAAAGG+GGG | + | chr5_3:2998173-2998192 | None:intergenic | 15.0% |
!! | TTAAAATTCCCAATAAATAA+AGG | + | chr5_3:2999228-2999247 | None:intergenic | 15.0% |
!! | GAATTTGTGGTATAAATAAA+GGG | + | chr5_3:2998283-2998302 | None:intergenic | 20.0% |
!!! | TTTATTACAAGTTTTCATCT+TGG | + | chr5_3:2998488-2998507 | None:intergenic | 20.0% |
!!! | ATATCATTGTTATTTGTCAT+TGG | - | chr5_3:2999108-2999127 | Msa0791910:CDS | 20.0% |
!! | AAAAATATAGTCATGTATTG+TGG | - | chr5_3:2999135-2999154 | Msa0791910:CDS | 20.0% |
!! | GAATTTGTGGTATAAATAAA+GGG | + | chr5_3:2998283-2998302 | None:intergenic | 20.0% |
!!! | TTTATTACAAGTTTTCATCT+TGG | + | chr5_3:2998488-2998507 | None:intergenic | 20.0% |
!!! | ATATCATTGTTATTTGTCAT+TGG | - | chr5_3:2999108-2999127 | Msa0791910:CDS | 20.0% |
!! | AAAAATATAGTCATGTATTG+TGG | - | chr5_3:2999135-2999154 | Msa0791910:CDS | 20.0% |
!!! | CAAAGTATTGTTTCCTTTTT+CGG | + | chr5_3:2997789-2997808 | None:intergenic | 25.0% |
! | ATCTTTAATTCAGAATCTGA+AGG | + | chr5_3:2998227-2998246 | None:intergenic | 25.0% |
! | GGAATTTGTGGTATAAATAA+AGG | + | chr5_3:2998284-2998303 | None:intergenic | 25.0% |
! | ATCATCATAATTGGAATTTG+TGG | + | chr5_3:2998296-2998315 | None:intergenic | 25.0% |
! | ATCATCATCATCATCATAAT+TGG | + | chr5_3:2998305-2998324 | None:intergenic | 25.0% |
!!! | TTTTTTACATGAATAGATGC+AGG | - | chr5_3:2998357-2998376 | Msa0791910:CDS | 25.0% |
! | AATGAAACAAGAGAAGAAAA+AGG | - | chr5_3:2998447-2998466 | Msa0791910:CDS | 25.0% |
! | GTAACAAATGCAAAAAATCA+GGG | - | chr5_3:2998758-2998777 | Msa0791910:intron | 25.0% |
! | TAACAAATGCAAAAAATCAG+GGG | - | chr5_3:2998759-2998778 | Msa0791910:intron | 25.0% |
!! | TTCTCAAAAGCAAAGTATTA+TGG | - | chr5_3:2999161-2999180 | Msa0791910:exon | 25.0% |
!! | TTGTGTTGTGTTATCTTTTT+GGG | + | chr5_3:2997745-2997764 | None:intergenic | 25.0% |
!!! | CAAAGTATTGTTTCCTTTTT+CGG | + | chr5_3:2997789-2997808 | None:intergenic | 25.0% |
! | ATCTTTAATTCAGAATCTGA+AGG | + | chr5_3:2998227-2998246 | None:intergenic | 25.0% |
! | GGAATTTGTGGTATAAATAA+AGG | + | chr5_3:2998284-2998303 | None:intergenic | 25.0% |
! | ATCATCATAATTGGAATTTG+TGG | + | chr5_3:2998296-2998315 | None:intergenic | 25.0% |
! | ATCATCATCATCATCATAAT+TGG | + | chr5_3:2998305-2998324 | None:intergenic | 25.0% |
!!! | TTTTTTACATGAATAGATGC+AGG | - | chr5_3:2998357-2998376 | Msa0791910:CDS | 25.0% |
! | AATGAAACAAGAGAAGAAAA+AGG | - | chr5_3:2998447-2998466 | Msa0791910:CDS | 25.0% |
! | GTAACAAATGCAAAAAATCA+GGG | - | chr5_3:2998758-2998777 | Msa0791910:intron | 25.0% |
! | TAACAAATGCAAAAAATCAG+GGG | - | chr5_3:2998759-2998778 | Msa0791910:intron | 25.0% |
!! | TTCTCAAAAGCAAAGTATTA+TGG | - | chr5_3:2999161-2999180 | Msa0791910:exon | 25.0% |
CTTCTGAATTACCTCAATTA+GGG | - | chr5_3:2998078-2998097 | Msa0791910:CDS | 30.0% | |
!!! | TTTTTTCCTGTTTCTTGTTG+TGG | - | chr5_3:2998252-2998271 | Msa0791910:CDS | 30.0% |
!! | TTTTTCCTGTTTCTTGTTGT+GGG | - | chr5_3:2998253-2998272 | Msa0791910:CDS | 30.0% |
! | TTACAAGTTTTCATCTTGGA+GGG | + | chr5_3:2998484-2998503 | None:intergenic | 30.0% |
! | ATTACAAGTTTTCATCTTGG+AGG | + | chr5_3:2998485-2998504 | None:intergenic | 30.0% |
TACTTCACATCATCATGTTA+TGG | - | chr5_3:2998636-2998655 | Msa0791910:intron | 30.0% | |
AATAATGCATCTCTTGTTAC+TGG | - | chr5_3:2998673-2998692 | Msa0791910:intron | 30.0% | |
ATAATGCATCTCTTGTTACT+GGG | - | chr5_3:2998674-2998693 | Msa0791910:intron | 30.0% | |
GTTTAACAAAGAGACTAATG+TGG | - | chr5_3:2998696-2998715 | Msa0791910:intron | 30.0% | |
GGTAACAAATGCAAAAAATC+AGG | - | chr5_3:2998757-2998776 | Msa0791910:intron | 30.0% | |
ATTGTTACAAGAGTTTGAGA+AGG | - | chr5_3:2998789-2998808 | Msa0791910:intron | 30.0% | |
GAATTCTGAATTCTCACATT+AGG | + | chr5_3:2998880-2998899 | None:intergenic | 30.0% | |
GAATTCTGTTGATCTTAACA+TGG | - | chr5_3:2998894-2998913 | Msa0791910:CDS | 30.0% | |
! | GTTGTGTTGTGTTATCTTTT+TGG | + | chr5_3:2997746-2997765 | None:intergenic | 30.0% |
CTTCTGAATTACCTCAATTA+GGG | - | chr5_3:2998078-2998097 | Msa0791910:CDS | 30.0% | |
!!! | TTTTTTCCTGTTTCTTGTTG+TGG | - | chr5_3:2998252-2998271 | Msa0791910:CDS | 30.0% |
!! | TTTTTCCTGTTTCTTGTTGT+GGG | - | chr5_3:2998253-2998272 | Msa0791910:CDS | 30.0% |
! | TTACAAGTTTTCATCTTGGA+GGG | + | chr5_3:2998484-2998503 | None:intergenic | 30.0% |
! | ATTACAAGTTTTCATCTTGG+AGG | + | chr5_3:2998485-2998504 | None:intergenic | 30.0% |
TACTTCACATCATCATGTTA+TGG | - | chr5_3:2998636-2998655 | Msa0791910:intron | 30.0% | |
AATAATGCATCTCTTGTTAC+TGG | - | chr5_3:2998673-2998692 | Msa0791910:intron | 30.0% | |
ATAATGCATCTCTTGTTACT+GGG | - | chr5_3:2998674-2998693 | Msa0791910:intron | 30.0% | |
GTTTAACAAAGAGACTAATG+TGG | - | chr5_3:2998696-2998715 | Msa0791910:intron | 30.0% | |
GGTAACAAATGCAAAAAATC+AGG | - | chr5_3:2998757-2998776 | Msa0791910:intron | 30.0% | |
ATTGTTACAAGAGTTTGAGA+AGG | - | chr5_3:2998789-2998808 | Msa0791910:intron | 30.0% | |
GAATTCTGAATTCTCACATT+AGG | + | chr5_3:2998880-2998899 | None:intergenic | 30.0% | |
GAATTCTGTTGATCTTAACA+TGG | - | chr5_3:2998894-2998913 | Msa0791910:CDS | 30.0% | |
ACAATAACAACCACCGAAAA+AGG | - | chr5_3:2997773-2997792 | Msa0791910:three_prime_UTR | 35.0% | |
!!! | AGTATTGTTTCCTTTTTCGG+TGG | + | chr5_3:2997786-2997805 | None:intergenic | 35.0% |
!!! | CTGTTTTTTTCTTCACGTCT+TGG | + | chr5_3:2997998-2998017 | None:intergenic | 35.0% |
GCTTCTGAATTACCTCAATT+AGG | - | chr5_3:2998077-2998096 | Msa0791910:CDS | 35.0% | |
TCCTAATCTACCTAATCTCT+TGG | - | chr5_3:2998112-2998131 | Msa0791910:CDS | 35.0% | |
CCTAATCTACCTAATCTCTT+GGG | - | chr5_3:2998113-2998132 | Msa0791910:CDS | 35.0% | |
!! | TTTTCCTGTTTCTTGTTGTG+GGG | - | chr5_3:2998254-2998273 | Msa0791910:CDS | 35.0% |
TTACATGAATAGATGCAGGA+TGG | - | chr5_3:2998361-2998380 | Msa0791910:CDS | 35.0% | |
TTCAATTCCAATTCATCCAC+CGG | + | chr5_3:2998580-2998599 | None:intergenic | 35.0% | |
TGAAGTAGAATCTTCAGGTA+TGG | + | chr5_3:2998623-2998642 | None:intergenic | 35.0% | |
TGATGTGAAGTAGAATCTTC+AGG | + | chr5_3:2998628-2998647 | None:intergenic | 35.0% | |
AAAGAGGATTGAAGTTTGCA+TGG | - | chr5_3:2998735-2998754 | Msa0791910:intron | 35.0% | |
AAGAGGATTGAAGTTTGCAT+GGG | - | chr5_3:2998736-2998755 | Msa0791910:intron | 35.0% | |
TGTTGATCTTAACATGGTTC+AGG | - | chr5_3:2998900-2998919 | Msa0791910:CDS | 35.0% | |
GTTGATCTTAACATGGTTCA+GGG | - | chr5_3:2998901-2998920 | Msa0791910:CDS | 35.0% | |
ATTGTATATATGTGTCAGCG+TGG | - | chr5_3:2999080-2999099 | Msa0791910:CDS | 35.0% | |
ACAATAACAACCACCGAAAA+AGG | - | chr5_3:2997773-2997792 | Msa0791910:three_prime_UTR | 35.0% | |
!!! | AGTATTGTTTCCTTTTTCGG+TGG | + | chr5_3:2997786-2997805 | None:intergenic | 35.0% |
!!! | CTGTTTTTTTCTTCACGTCT+TGG | + | chr5_3:2997998-2998017 | None:intergenic | 35.0% |
GCTTCTGAATTACCTCAATT+AGG | - | chr5_3:2998077-2998096 | Msa0791910:CDS | 35.0% | |
TCCTAATCTACCTAATCTCT+TGG | - | chr5_3:2998112-2998131 | Msa0791910:CDS | 35.0% | |
CCTAATCTACCTAATCTCTT+GGG | - | chr5_3:2998113-2998132 | Msa0791910:CDS | 35.0% | |
!! | TTTTCCTGTTTCTTGTTGTG+GGG | - | chr5_3:2998254-2998273 | Msa0791910:CDS | 35.0% |
TTACATGAATAGATGCAGGA+TGG | - | chr5_3:2998361-2998380 | Msa0791910:CDS | 35.0% | |
TTCAATTCCAATTCATCCAC+CGG | + | chr5_3:2998580-2998599 | None:intergenic | 35.0% | |
TGAAGTAGAATCTTCAGGTA+TGG | + | chr5_3:2998623-2998642 | None:intergenic | 35.0% | |
TGATGTGAAGTAGAATCTTC+AGG | + | chr5_3:2998628-2998647 | None:intergenic | 35.0% | |
AAAGAGGATTGAAGTTTGCA+TGG | - | chr5_3:2998735-2998754 | Msa0791910:intron | 35.0% | |
AAGAGGATTGAAGTTTGCAT+GGG | - | chr5_3:2998736-2998755 | Msa0791910:intron | 35.0% | |
TGTTGATCTTAACATGGTTC+AGG | - | chr5_3:2998900-2998919 | Msa0791910:CDS | 35.0% | |
GTTGATCTTAACATGGTTCA+GGG | - | chr5_3:2998901-2998920 | Msa0791910:CDS | 35.0% | |
ATTGTATATATGTGTCAGCG+TGG | - | chr5_3:2999080-2999099 | Msa0791910:CDS | 35.0% | |
TGTTGAGCAAACCCTAATTG+AGG | + | chr5_3:2998092-2998111 | None:intergenic | 40.0% | |
CCCAAGAGATTAGGTAGATT+AGG | + | chr5_3:2998116-2998135 | None:intergenic | 40.0% | |
TGAAGTTGACCCAAGAGATT+AGG | + | chr5_3:2998125-2998144 | None:intergenic | 40.0% | |
AGCTAGAGAAAGTAAGAGCA+GGG | - | chr5_3:2998404-2998423 | Msa0791910:CDS | 40.0% | |
ATCACTTGACTCAGATTCAG+AGG | + | chr5_3:2998533-2998552 | None:intergenic | 40.0% | |
TCTTCAGGTATGGATAGCAT+AGG | + | chr5_3:2998613-2998632 | None:intergenic | 40.0% | |
CAAGAGTTTGAGAAGGTAGT+AGG | - | chr5_3:2998796-2998815 | Msa0791910:intron | 40.0% | |
TGTTGTTGGATGCAAGTGTA+TGG | - | chr5_3:2998837-2998856 | Msa0791910:intron | 40.0% | |
GTTGTTGGATGCAAGTGTAT+GGG | - | chr5_3:2998838-2998857 | Msa0791910:intron | 40.0% | |
TTGTTGGATGCAAGTGTATG+GGG | - | chr5_3:2998839-2998858 | Msa0791910:intron | 40.0% | |
! | ACCATTGTGGCTAGGTTTTT+AGG | - | chr5_3:2998991-2999010 | Msa0791910:CDS | 40.0% |
! | CCATTGTGGCTAGGTTTTTA+GGG | - | chr5_3:2998992-2999011 | Msa0791910:CDS | 40.0% |
!! | CATTGTGGCTAGGTTTTTAG+GGG | - | chr5_3:2998993-2999012 | Msa0791910:CDS | 40.0% |
GGATTACAAAGATGTGGGTA+CGG | - | chr5_3:2999017-2999036 | Msa0791910:CDS | 40.0% | |
TGTTGAGCAAACCCTAATTG+AGG | + | chr5_3:2998092-2998111 | None:intergenic | 40.0% | |
CCCAAGAGATTAGGTAGATT+AGG | + | chr5_3:2998116-2998135 | None:intergenic | 40.0% | |
TGAAGTTGACCCAAGAGATT+AGG | + | chr5_3:2998125-2998144 | None:intergenic | 40.0% | |
AGCTAGAGAAAGTAAGAGCA+GGG | - | chr5_3:2998404-2998423 | Msa0791910:CDS | 40.0% | |
ATCACTTGACTCAGATTCAG+AGG | + | chr5_3:2998533-2998552 | None:intergenic | 40.0% | |
TCTTCAGGTATGGATAGCAT+AGG | + | chr5_3:2998613-2998632 | None:intergenic | 40.0% | |
CAAGAGTTTGAGAAGGTAGT+AGG | - | chr5_3:2998796-2998815 | Msa0791910:intron | 40.0% | |
TGTTGTTGGATGCAAGTGTA+TGG | - | chr5_3:2998837-2998856 | Msa0791910:intron | 40.0% | |
GTTGTTGGATGCAAGTGTAT+GGG | - | chr5_3:2998838-2998857 | Msa0791910:intron | 40.0% | |
TTGTTGGATGCAAGTGTATG+GGG | - | chr5_3:2998839-2998858 | Msa0791910:intron | 40.0% | |
! | ACCATTGTGGCTAGGTTTTT+AGG | - | chr5_3:2998991-2999010 | Msa0791910:CDS | 40.0% |
! | CCATTGTGGCTAGGTTTTTA+GGG | - | chr5_3:2998992-2999011 | Msa0791910:CDS | 40.0% |
!! | CATTGTGGCTAGGTTTTTAG+GGG | - | chr5_3:2998993-2999012 | Msa0791910:CDS | 40.0% |
GGATTACAAAGATGTGGGTA+CGG | - | chr5_3:2999017-2999036 | Msa0791910:CDS | 40.0% | |
!! | AAAAAAGTACCGCGAGGCTT+TGG | + | chr5_3:2998148-2998167 | None:intergenic | 45.0% |
GAAACCCCACAACAAGAAAC+AGG | + | chr5_3:2998261-2998280 | None:intergenic | 45.0% | |
CATGAATAGATGCAGGATGG+TGG | - | chr5_3:2998364-2998383 | Msa0791910:CDS | 45.0% | |
GAGCTAGAGAAAGTAAGAGC+AGG | - | chr5_3:2998403-2998422 | Msa0791910:CDS | 45.0% | |
GCTAGAGAAAGTAAGAGCAG+GGG | - | chr5_3:2998405-2998424 | Msa0791910:CDS | 45.0% | |
TTGTGATGTTGCCACAAAGC+CGG | - | chr5_3:2998558-2998577 | Msa0791910:CDS | 45.0% | |
TTATCCCTGCAGCTCAAAAG+AGG | - | chr5_3:2998719-2998738 | Msa0791910:intron | 45.0% | |
! | CAATCCTCTTTTGAGCTGCA+GGG | + | chr5_3:2998726-2998745 | None:intergenic | 45.0% |
! | TCAATCCTCTTTTGAGCTGC+AGG | + | chr5_3:2998727-2998746 | None:intergenic | 45.0% |
!! | GAGAAGGTAGTAGGTGTTGA+AGG | - | chr5_3:2998805-2998824 | Msa0791910:intron | 45.0% |
!! | GTAGTAGGTGTTGAAGGTGA+AGG | - | chr5_3:2998811-2998830 | Msa0791910:intron | 45.0% |
!! | GAAGGTGAAGGTGTTGTTGT+TGG | - | chr5_3:2998823-2998842 | Msa0791910:intron | 45.0% |
AGAGGATGTGGATACCATTG+TGG | - | chr5_3:2998978-2998997 | Msa0791910:CDS | 45.0% | |
ATGTGGATACCATTGTGGCT+AGG | - | chr5_3:2998983-2999002 | Msa0791910:CDS | 45.0% | |
CCCTAAAAACCTAGCCACAA+TGG | + | chr5_3:2998995-2999014 | None:intergenic | 45.0% | |
AGGGGAGGATTACAAAGATG+TGG | - | chr5_3:2999011-2999030 | Msa0791910:CDS | 45.0% | |
GGGGAGGATTACAAAGATGT+GGG | - | chr5_3:2999012-2999031 | Msa0791910:CDS | 45.0% | |
!! | AAAAAAGTACCGCGAGGCTT+TGG | + | chr5_3:2998148-2998167 | None:intergenic | 45.0% |
GAAACCCCACAACAAGAAAC+AGG | + | chr5_3:2998261-2998280 | None:intergenic | 45.0% | |
CATGAATAGATGCAGGATGG+TGG | - | chr5_3:2998364-2998383 | Msa0791910:CDS | 45.0% | |
GAGCTAGAGAAAGTAAGAGC+AGG | - | chr5_3:2998403-2998422 | Msa0791910:CDS | 45.0% | |
GCTAGAGAAAGTAAGAGCAG+GGG | - | chr5_3:2998405-2998424 | Msa0791910:CDS | 45.0% | |
TTGTGATGTTGCCACAAAGC+CGG | - | chr5_3:2998558-2998577 | Msa0791910:CDS | 45.0% | |
TTATCCCTGCAGCTCAAAAG+AGG | - | chr5_3:2998719-2998738 | Msa0791910:intron | 45.0% | |
! | CAATCCTCTTTTGAGCTGCA+GGG | + | chr5_3:2998726-2998745 | None:intergenic | 45.0% |
! | TCAATCCTCTTTTGAGCTGC+AGG | + | chr5_3:2998727-2998746 | None:intergenic | 45.0% |
!! | GAGAAGGTAGTAGGTGTTGA+AGG | - | chr5_3:2998805-2998824 | Msa0791910:intron | 45.0% |
!! | GTAGTAGGTGTTGAAGGTGA+AGG | - | chr5_3:2998811-2998830 | Msa0791910:intron | 45.0% |
!! | GAAGGTGAAGGTGTTGTTGT+TGG | - | chr5_3:2998823-2998842 | Msa0791910:intron | 45.0% |
AGAGGATGTGGATACCATTG+TGG | - | chr5_3:2998978-2998997 | Msa0791910:CDS | 45.0% | |
ATGTGGATACCATTGTGGCT+AGG | - | chr5_3:2998983-2999002 | Msa0791910:CDS | 45.0% | |
CCCTAAAAACCTAGCCACAA+TGG | + | chr5_3:2998995-2999014 | None:intergenic | 45.0% | |
AGGGGAGGATTACAAAGATG+TGG | - | chr5_3:2999011-2999030 | Msa0791910:CDS | 45.0% | |
GGGGAGGATTACAAAGATGT+GGG | - | chr5_3:2999012-2999031 | Msa0791910:CDS | 45.0% | |
!! | TAATAAAAATAAAAGAAAAA+GGG | + | chr5_3:2998175-2998194 | None:intergenic | 5.0% |
!! | ATAATAAAAATAAAAGAAAA+AGG | + | chr5_3:2998176-2998195 | None:intergenic | 5.0% |
!! | TAATAAAAATAAAAGAAAAA+GGG | + | chr5_3:2998175-2998194 | None:intergenic | 5.0% |
!! | ATAATAAAAATAAAAGAAAA+AGG | + | chr5_3:2998176-2998195 | None:intergenic | 5.0% |
GACTATCACCGTCATCGTCA+TGG | - | chr5_3:2997833-2997852 | Msa0791910:three_prime_UTR | 50.0% | |
TATCACCGTCATCGTCATGG+AGG | - | chr5_3:2997836-2997855 | Msa0791910:three_prime_UTR | 50.0% | |
GGAAACCTCCATGACGATGA+CGG | + | chr5_3:2997844-2997863 | None:intergenic | 50.0% | |
GTCATCGTCATGGAGGTTTC+CGG | - | chr5_3:2997843-2997862 | Msa0791910:three_prime_UTR | 50.0% | |
GTAGGTTGTACGACGGAGAA+CGG | + | chr5_3:2997871-2997890 | None:intergenic | 50.0% | |
CGGAGATGTAGGTTGTACGA+CGG | + | chr5_3:2997878-2997897 | None:intergenic | 50.0% | |
CGTCGTACAACCTACATCTC+CGG | - | chr5_3:2997876-2997895 | Msa0791910:three_prime_UTR | 50.0% | |
AGGAACAACGCCATGAGAAC+GGG | + | chr5_3:2997916-2997935 | None:intergenic | 50.0% | |
GAGGAACAACGCCATGAGAA+CGG | + | chr5_3:2997917-2997936 | None:intergenic | 50.0% | |
GTTCTCATGGCGTTGTTCCT+CGG | - | chr5_3:2997916-2997935 | Msa0791910:three_prime_UTR | 50.0% | |
! | GGGTCTGGTTTCCATGATGA+GGG | - | chr5_3:2997957-2997976 | Msa0791910:CDS | 50.0% |
TCAACTTCACCAAAGCCTCG+CGG | - | chr5_3:2998136-2998155 | Msa0791910:CDS | 50.0% | |
GAAAGTAAGAGCAGGGGAGA+AGG | - | chr5_3:2998411-2998430 | Msa0791910:CDS | 50.0% | |
!! | CAATTCATCCACCGGCTTTG+TGG | + | chr5_3:2998572-2998591 | None:intergenic | 50.0% |
CACAAAGCCGGTGGATGAAT+TGG | - | chr5_3:2998570-2998589 | Msa0791910:CDS | 50.0% | |
CCAATGCAGAGAGGGTTACT+TGG | + | chr5_3:2998949-2998968 | None:intergenic | 50.0% | |
CCAAGTAACCCTCTCTGCAT+TGG | - | chr5_3:2998946-2998965 | Msa0791910:CDS | 50.0% | |
AACCCTCTCTGCATTGGAGT+TGG | - | chr5_3:2998952-2998971 | Msa0791910:CDS | 50.0% | |
GACCAACTCCAATGCAGAGA+GGG | + | chr5_3:2998957-2998976 | None:intergenic | 50.0% | |
AGACCAACTCCAATGCAGAG+AGG | + | chr5_3:2998958-2998977 | None:intergenic | 50.0% | |
! | CTGCATTGGAGTTGGTCTAG+AGG | - | chr5_3:2998960-2998979 | Msa0791910:CDS | 50.0% |
! | TGGAGTTGGTCTAGAGGATG+TGG | - | chr5_3:2998966-2998985 | Msa0791910:CDS | 50.0% |
!! | TGTGGCTAGGTTTTTAGGGG+AGG | - | chr5_3:2998996-2999015 | Msa0791910:CDS | 50.0% |
GACTATCACCGTCATCGTCA+TGG | - | chr5_3:2997833-2997852 | Msa0791910:three_prime_UTR | 50.0% | |
TATCACCGTCATCGTCATGG+AGG | - | chr5_3:2997836-2997855 | Msa0791910:three_prime_UTR | 50.0% | |
GGAAACCTCCATGACGATGA+CGG | + | chr5_3:2997844-2997863 | None:intergenic | 50.0% | |
GTCATCGTCATGGAGGTTTC+CGG | - | chr5_3:2997843-2997862 | Msa0791910:three_prime_UTR | 50.0% | |
GTAGGTTGTACGACGGAGAA+CGG | + | chr5_3:2997871-2997890 | None:intergenic | 50.0% | |
CGGAGATGTAGGTTGTACGA+CGG | + | chr5_3:2997878-2997897 | None:intergenic | 50.0% | |
CGTCGTACAACCTACATCTC+CGG | - | chr5_3:2997876-2997895 | Msa0791910:three_prime_UTR | 50.0% | |
AGGAACAACGCCATGAGAAC+GGG | + | chr5_3:2997916-2997935 | None:intergenic | 50.0% | |
GAGGAACAACGCCATGAGAA+CGG | + | chr5_3:2997917-2997936 | None:intergenic | 50.0% | |
GTTCTCATGGCGTTGTTCCT+CGG | - | chr5_3:2997916-2997935 | Msa0791910:three_prime_UTR | 50.0% | |
! | GGGTCTGGTTTCCATGATGA+GGG | - | chr5_3:2997957-2997976 | Msa0791910:CDS | 50.0% |
TCAACTTCACCAAAGCCTCG+CGG | - | chr5_3:2998136-2998155 | Msa0791910:CDS | 50.0% | |
GAAAGTAAGAGCAGGGGAGA+AGG | - | chr5_3:2998411-2998430 | Msa0791910:CDS | 50.0% | |
!! | CAATTCATCCACCGGCTTTG+TGG | + | chr5_3:2998572-2998591 | None:intergenic | 50.0% |
CACAAAGCCGGTGGATGAAT+TGG | - | chr5_3:2998570-2998589 | Msa0791910:CDS | 50.0% | |
CCAATGCAGAGAGGGTTACT+TGG | + | chr5_3:2998949-2998968 | None:intergenic | 50.0% | |
CCAAGTAACCCTCTCTGCAT+TGG | - | chr5_3:2998946-2998965 | Msa0791910:CDS | 50.0% | |
AACCCTCTCTGCATTGGAGT+TGG | - | chr5_3:2998952-2998971 | Msa0791910:CDS | 50.0% | |
GACCAACTCCAATGCAGAGA+GGG | + | chr5_3:2998957-2998976 | None:intergenic | 50.0% | |
AGACCAACTCCAATGCAGAG+AGG | + | chr5_3:2998958-2998977 | None:intergenic | 50.0% | |
! | CTGCATTGGAGTTGGTCTAG+AGG | - | chr5_3:2998960-2998979 | Msa0791910:CDS | 50.0% |
! | TGGAGTTGGTCTAGAGGATG+TGG | - | chr5_3:2998966-2998985 | Msa0791910:CDS | 50.0% |
!! | TGTGGCTAGGTTTTTAGGGG+AGG | - | chr5_3:2998996-2999015 | Msa0791910:CDS | 50.0% |
ACAACCTACATCTCCGGCGT+TGG | - | chr5_3:2997882-2997901 | Msa0791910:three_prime_UTR | 55.0% | |
CAACCTACATCTCCGGCGTT+GGG | - | chr5_3:2997883-2997902 | Msa0791910:three_prime_UTR | 55.0% | |
CGTTGTTCCTCGGAGAGTGA+GGG | - | chr5_3:2997926-2997945 | Msa0791910:three_prime_UTR | 55.0% | |
ATAGACACCCTCACTCTCCG+AGG | + | chr5_3:2997936-2997955 | None:intergenic | 55.0% | |
!! | TCGGAGAGTGAGGGTGTCTA+TGG | - | chr5_3:2997935-2997954 | Msa0791910:three_prime_UTR | 55.0% |
!! | CGGAGAGTGAGGGTGTCTAT+GGG | - | chr5_3:2997936-2997955 | Msa0791910:three_prime_UTR | 55.0% |
!! | GGAGAGTGAGGGTGTCTATG+GGG | - | chr5_3:2997937-2997956 | Msa0791910:exon | 55.0% |
! | GGGGTCTGGTTTCCATGATG+AGG | - | chr5_3:2997956-2997975 | Msa0791910:CDS | 55.0% |
ACTGCACGTGACCCTCATCA+TGG | + | chr5_3:2997971-2997990 | None:intergenic | 55.0% | |
!! | GGGGTGAAAAAAGTACCGCG+AGG | + | chr5_3:2998154-2998173 | None:intergenic | 55.0% |
TGATGTTGCCACAAAGCCGG+TGG | - | chr5_3:2998561-2998580 | Msa0791910:CDS | 55.0% | |
ACAACCTACATCTCCGGCGT+TGG | - | chr5_3:2997882-2997901 | Msa0791910:three_prime_UTR | 55.0% | |
CAACCTACATCTCCGGCGTT+GGG | - | chr5_3:2997883-2997902 | Msa0791910:three_prime_UTR | 55.0% | |
CGTTGTTCCTCGGAGAGTGA+GGG | - | chr5_3:2997926-2997945 | Msa0791910:three_prime_UTR | 55.0% | |
ATAGACACCCTCACTCTCCG+AGG | + | chr5_3:2997936-2997955 | None:intergenic | 55.0% | |
!! | TCGGAGAGTGAGGGTGTCTA+TGG | - | chr5_3:2997935-2997954 | Msa0791910:three_prime_UTR | 55.0% |
!! | CGGAGAGTGAGGGTGTCTAT+GGG | - | chr5_3:2997936-2997955 | Msa0791910:three_prime_UTR | 55.0% |
!! | GGAGAGTGAGGGTGTCTATG+GGG | - | chr5_3:2997937-2997956 | Msa0791910:exon | 55.0% |
! | GGGGTCTGGTTTCCATGATG+AGG | - | chr5_3:2997956-2997975 | Msa0791910:CDS | 55.0% |
ACTGCACGTGACCCTCATCA+TGG | + | chr5_3:2997971-2997990 | None:intergenic | 55.0% | |
!! | GGGGTGAAAAAAGTACCGCG+AGG | + | chr5_3:2998154-2998173 | None:intergenic | 55.0% |
TGATGTTGCCACAAAGCCGG+TGG | - | chr5_3:2998561-2998580 | Msa0791910:CDS | 55.0% | |
TGTACGACGGAGAACGGTGC+CGG | + | chr5_3:2997865-2997884 | None:intergenic | 60.0% | |
AGTCCCAACGCCGGAGATGT+AGG | + | chr5_3:2997889-2997908 | None:intergenic | 60.0% | |
GGGACTCACACCCGTTCTCA+TGG | - | chr5_3:2997903-2997922 | Msa0791910:three_prime_UTR | 60.0% | |
GCGTTGTTCCTCGGAGAGTG+AGG | - | chr5_3:2997925-2997944 | Msa0791910:three_prime_UTR | 60.0% | |
!! | GTGAGGGTGTCTATGGGGTC+TGG | - | chr5_3:2997942-2997961 | Msa0791910:exon | 60.0% |
TGTACGACGGAGAACGGTGC+CGG | + | chr5_3:2997865-2997884 | None:intergenic | 60.0% | |
AGTCCCAACGCCGGAGATGT+AGG | + | chr5_3:2997889-2997908 | None:intergenic | 60.0% | |
GGGACTCACACCCGTTCTCA+TGG | - | chr5_3:2997903-2997922 | Msa0791910:three_prime_UTR | 60.0% | |
GCGTTGTTCCTCGGAGAGTG+AGG | - | chr5_3:2997925-2997944 | Msa0791910:three_prime_UTR | 60.0% | |
!! | GTGAGGGTGTCTATGGGGTC+TGG | - | chr5_3:2997942-2997961 | Msa0791910:exon | 60.0% |
ACGGGTGTGAGTCCCAACGC+CGG | + | chr5_3:2997898-2997917 | None:intergenic | 65.0% | |
ACGGGTGTGAGTCCCAACGC+CGG | + | chr5_3:2997898-2997917 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 2997744 | 2999271 | 2997744 | ID=Msa0791910;Name=Msa0791910 |
chr5_3 | mRNA | 2997744 | 2999271 | 2997744 | ID=Msa0791910-mRNA-1;Parent=Msa0791910;Name=Msa0791910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=108|1|1|1|1|1|2|212|330 |
chr5_3 | exon | 2997744 | 2998642 | 2997744 | ID=Msa0791910-mRNA-1:exon:1266;Parent=Msa0791910-mRNA-1 |
chr5_3 | exon | 2998858 | 2999271 | 2998858 | ID=Msa0791910-mRNA-1:exon:1265;Parent=Msa0791910-mRNA-1 |
chr5_3 | five_prime_UTR | 2999164 | 2999271 | 2999164 | ID=Msa0791910-mRNA-1:five_prime_utr;Parent=Msa0791910-mRNA-1 |
chr5_3 | CDS | 2998858 | 2999163 | 2998858 | ID=Msa0791910-mRNA-1:cds;Parent=Msa0791910-mRNA-1 |
chr5_3 | CDS | 2997956 | 2998642 | 2997956 | ID=Msa0791910-mRNA-1:cds;Parent=Msa0791910-mRNA-1 |
chr5_3 | three_prime_UTR | 2997744 | 2997955 | 2997744 | ID=Msa0791910-mRNA-1:three_prime_utr;Parent=Msa0791910-mRNA-1 |
Gene Sequence |
Protein sequence |