AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0791910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791910 MtrunA17_Chr4g0069441 87.826 345 23 3 1 330 1 341 1.82e-175 489
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791910 AT1G48300.1 36.813 364 169 14 1 318 1 349 2.28e-34 129

Find 85 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTGAATTACCTCAATT+AGG 0.183509 5_3:-2998916 Msa0791910:CDS
TTCTCAAAAGCAAAGTATTA+TGG 0.242646 5_3:-2997832 Msa0791910:three_prime_UTR
ACAATAACAACCACCGAAAA+AGG 0.244300 5_3:-2999220 Msa0791910:five_prime_UTR
AATAATGCATCTCTTGTTAC+TGG 0.282326 5_3:-2998320 Msa0791910:CDS
CTTCTGAATTACCTCAATTA+GGG 0.289665 5_3:-2998915 Msa0791910:CDS
TTAAAATTCCCAATAAATAA+AGG 0.304201 5_3:+2997768 None:intergenic
TGTTGATCTTAACATGGTTC+AGG 0.306649 5_3:-2998093 Msa0791910:CDS
TCGGAGAGTGAGGGTGTCTA+TGG 0.311445 5_3:-2999058 Msa0791910:CDS
GAATTCTGAATTCTCACATT+AGG 0.340007 5_3:+2998116 None:intergenic
TACTTCACATCATCATGTTA+TGG 0.361031 5_3:-2998357 Msa0791910:CDS
AATGAAACAAGAGAAGAAAA+AGG 0.361365 5_3:-2998546 Msa0791910:CDS
TCCTAATCTACCTAATCTCT+TGG 0.370750 5_3:-2998881 Msa0791910:CDS
ATATCATTGTTATTTGTCAT+TGG 0.379429 5_3:-2997885 Msa0791910:three_prime_UTR
CCCAAGAGATTAGGTAGATT+AGG 0.382872 5_3:+2998880 None:intergenic
CAAGAGTTTGAGAAGGTAGT+AGG 0.384655 5_3:-2998197 Msa0791910:CDS
CACAAAGCCGGTGGATGAAT+TGG 0.389932 5_3:-2998423 Msa0791910:CDS
CAATTCATCCACCGGCTTTG+TGG 0.397930 5_3:+2998424 None:intergenic
GTCATCGTCATGGAGGTTTC+CGG 0.398566 5_3:-2999150 Msa0791910:exon
TGTTGTTGGATGCAAGTGTA+TGG 0.400360 5_3:-2998156 Msa0791910:CDS
GAAAGTAAGAGCAGGGGAGA+AGG 0.401972 5_3:-2998582 Msa0791910:CDS
GAGAAGGTAGTAGGTGTTGA+AGG 0.415252 5_3:-2998188 Msa0791910:CDS
TGAAGTTGACCCAAGAGATT+AGG 0.430286 5_3:+2998871 None:intergenic
TGATGTGAAGTAGAATCTTC+AGG 0.436223 5_3:+2998368 None:intergenic
GTTGATCTTAACATGGTTCA+GGG 0.438643 5_3:-2998092 Msa0791910:CDS
GTGAGGGTGTCTATGGGGTC+TGG 0.444353 5_3:-2999051 Msa0791910:CDS
CCAATGCAGAGAGGGTTACT+TGG 0.447490 5_3:+2998047 None:intergenic
AGGAACAACGCCATGAGAAC+GGG 0.451237 5_3:+2999080 None:intergenic
CGGAGAGTGAGGGTGTCTAT+GGG 0.456153 5_3:-2999057 Msa0791910:CDS
TTCAATTCCAATTCATCCAC+CGG 0.460806 5_3:+2998416 None:intergenic
GAAGGTGAAGGTGTTGTTGT+TGG 0.461516 5_3:-2998170 Msa0791910:CDS
GTTCTCATGGCGTTGTTCCT+CGG 0.476868 5_3:-2999077 Msa0791910:CDS
GAGCTAGAGAAAGTAAGAGC+AGG 0.491556 5_3:-2998590 Msa0791910:CDS
GGGGTCTGGTTTCCATGATG+AGG 0.505395 5_3:-2999037 Msa0791910:CDS
ACAACCTACATCTCCGGCGT+TGG 0.506506 5_3:-2999111 Msa0791910:CDS
CCAAGTAACCCTCTCTGCAT+TGG 0.508307 5_3:-2998047 Msa0791910:CDS
AAAGAGGATTGAAGTTTGCA+TGG 0.512458 5_3:-2998258 Msa0791910:CDS
GGGTCTGGTTTCCATGATGA+GGG 0.513644 5_3:-2999036 Msa0791910:CDS
TGGAGTTGGTCTAGAGGATG+TGG 0.516198 5_3:-2998027 Msa0791910:CDS
CCTAATCTACCTAATCTCTT+GGG 0.516487 5_3:-2998880 Msa0791910:CDS
GGGACTCACACCCGTTCTCA+TGG 0.519048 5_3:-2999090 Msa0791910:CDS
AGGGGAGGATTACAAAGATG+TGG 0.525816 5_3:-2997982 Msa0791910:CDS
TGAAGTAGAATCTTCAGGTA+TGG 0.531707 5_3:+2998373 None:intergenic
AGTCCCAACGCCGGAGATGT+AGG 0.532391 5_3:+2999107 None:intergenic
GACTATCACCGTCATCGTCA+TGG 0.541050 5_3:-2999160 Msa0791910:exon
AACCCTCTCTGCATTGGAGT+TGG 0.545052 5_3:-2998041 Msa0791910:CDS
CTGCATTGGAGTTGGTCTAG+AGG 0.545072 5_3:-2998033 Msa0791910:CDS
AGCTAGAGAAAGTAAGAGCA+GGG 0.546581 5_3:-2998589 Msa0791910:CDS
GTTGTTGGATGCAAGTGTAT+GGG 0.547984 5_3:-2998155 Msa0791910:CDS
ATAATGCATCTCTTGTTACT+GGG 0.551376 5_3:-2998319 Msa0791910:CDS
GCGTTGTTCCTCGGAGAGTG+AGG 0.551861 5_3:-2999068 Msa0791910:CDS
TTATCCCTGCAGCTCAAAAG+AGG 0.567917 5_3:-2998274 Msa0791910:CDS
ACTGCACGTGACCCTCATCA+TGG 0.571166 5_3:+2999025 None:intergenic
AAGAGGATTGAAGTTTGCAT+GGG 0.571804 5_3:-2998257 Msa0791910:CDS
GACCAACTCCAATGCAGAGA+GGG 0.577245 5_3:+2998039 None:intergenic
TTGTTGGATGCAAGTGTATG+GGG 0.578412 5_3:-2998154 Msa0791910:CDS
ATCACTTGACTCAGATTCAG+AGG 0.579827 5_3:+2998463 None:intergenic
GAGGAACAACGCCATGAGAA+CGG 0.580124 5_3:+2999079 None:intergenic
TGTACGACGGAGAACGGTGC+CGG 0.582122 5_3:+2999131 None:intergenic
CGTTGTTCCTCGGAGAGTGA+GGG 0.586366 5_3:-2999067 Msa0791910:CDS
TGTTGAGCAAACCCTAATTG+AGG 0.593503 5_3:+2998904 None:intergenic
ATGTGGATACCATTGTGGCT+AGG 0.594294 5_3:-2998010 Msa0791910:CDS
GTAGTAGGTGTTGAAGGTGA+AGG 0.594774 5_3:-2998182 Msa0791910:CDS
GGATTACAAAGATGTGGGTA+CGG 0.595227 5_3:-2997976 Msa0791910:CDS
GAATTCTGTTGATCTTAACA+TGG 0.597830 5_3:-2998099 Msa0791910:CDS
GGGGAGGATTACAAAGATGT+GGG 0.600350 5_3:-2997981 Msa0791910:CDS
CGTCGTACAACCTACATCTC+CGG 0.602217 5_3:-2999117 Msa0791910:CDS
GTAGGTTGTACGACGGAGAA+CGG 0.604515 5_3:+2999125 None:intergenic
TTACATGAATAGATGCAGGA+TGG 0.624402 5_3:-2998632 Msa0791910:intron
GGAAACCTCCATGACGATGA+CGG 0.624471 5_3:+2999152 None:intergenic
GCTAGAGAAAGTAAGAGCAG+GGG 0.626526 5_3:-2998588 Msa0791910:CDS
TCTTCAGGTATGGATAGCAT+AGG 0.636532 5_3:+2998383 None:intergenic
ATTGTTACAAGAGTTTGAGA+AGG 0.637353 5_3:-2998204 Msa0791910:CDS
TTGTGATGTTGCCACAAAGC+CGG 0.644781 5_3:-2998435 Msa0791910:CDS
TGATGTTGCCACAAAGCCGG+TGG 0.654844 5_3:-2998432 Msa0791910:CDS
AGAGGATGTGGATACCATTG+TGG 0.664578 5_3:-2998015 Msa0791910:CDS
GTTTAACAAAGAGACTAATG+TGG 0.665239 5_3:-2998297 Msa0791910:CDS
ACGGGTGTGAGTCCCAACGC+CGG 0.672451 5_3:+2999098 None:intergenic
GGAGAGTGAGGGTGTCTATG+GGG 0.673193 5_3:-2999056 Msa0791910:CDS
ATAGACACCCTCACTCTCCG+AGG 0.695788 5_3:+2999060 None:intergenic
AGACCAACTCCAATGCAGAG+AGG 0.696753 5_3:+2998038 None:intergenic
CATGAATAGATGCAGGATGG+TGG 0.702277 5_3:-2998629 Msa0791910:intron
ATTGTATATATGTGTCAGCG+TGG 0.721744 5_3:-2997913 Msa0791910:three_prime_UTR
TATCACCGTCATCGTCATGG+AGG 0.734877 5_3:-2999157 Msa0791910:exon
CGGAGATGTAGGTTGTACGA+CGG 0.747412 5_3:+2999118 None:intergenic
TCAACTTCACCAAAGCCTCG+CGG 0.751601 5_3:-2998857 Msa0791910:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATAAAAGAAAAAG+GGG + chr5_3:2998174-2998193 None:intergenic 10.0%
!!! TAATACGTTTTTTTTTTTAA+AGG + chr5_3:2999193-2999212 None:intergenic 10.0%
!! TTAAAAAAAAAAACGTATTA+TGG - chr5_3:2999193-2999212 Msa0791910:five_prime_UTR 10.0%
!!! ATTTTATTTCCTTTATTTAT+TGG - chr5_3:2999216-2999235 Msa0791910:five_prime_UTR 10.0%
!!! TTTTATTTCCTTTATTTATT+GGG - chr5_3:2999217-2999236 Msa0791910:five_prime_UTR 10.0%
!! AATAAAAATAAAAGAAAAAG+GGG + chr5_3:2998174-2998193 None:intergenic 10.0%
!!! TAATACGTTTTTTTTTTTAA+AGG + chr5_3:2999193-2999212 None:intergenic 10.0%
!! TTAAAAAAAAAAACGTATTA+TGG - chr5_3:2999193-2999212 Msa0791910:five_prime_UTR 10.0%
!!! ATTTTATTTCCTTTATTTAT+TGG - chr5_3:2999216-2999235 Msa0791910:five_prime_UTR 10.0%
!!! TTTTATTTCCTTTATTTATT+GGG - chr5_3:2999217-2999236 Msa0791910:five_prime_UTR 10.0%
!! ATAAAAATAAAAGAAAAAGG+GGG + chr5_3:2998173-2998192 None:intergenic 15.0%
!! TTAAAATTCCCAATAAATAA+AGG + chr5_3:2999228-2999247 None:intergenic 15.0%
!! ATAAAAATAAAAGAAAAAGG+GGG + chr5_3:2998173-2998192 None:intergenic 15.0%
!! TTAAAATTCCCAATAAATAA+AGG + chr5_3:2999228-2999247 None:intergenic 15.0%
!! GAATTTGTGGTATAAATAAA+GGG + chr5_3:2998283-2998302 None:intergenic 20.0%
!!! TTTATTACAAGTTTTCATCT+TGG + chr5_3:2998488-2998507 None:intergenic 20.0%
!!! ATATCATTGTTATTTGTCAT+TGG - chr5_3:2999108-2999127 Msa0791910:CDS 20.0%
!! AAAAATATAGTCATGTATTG+TGG - chr5_3:2999135-2999154 Msa0791910:CDS 20.0%
!! GAATTTGTGGTATAAATAAA+GGG + chr5_3:2998283-2998302 None:intergenic 20.0%
!!! TTTATTACAAGTTTTCATCT+TGG + chr5_3:2998488-2998507 None:intergenic 20.0%
!!! ATATCATTGTTATTTGTCAT+TGG - chr5_3:2999108-2999127 Msa0791910:CDS 20.0%
!! AAAAATATAGTCATGTATTG+TGG - chr5_3:2999135-2999154 Msa0791910:CDS 20.0%
!!! CAAAGTATTGTTTCCTTTTT+CGG + chr5_3:2997789-2997808 None:intergenic 25.0%
! ATCTTTAATTCAGAATCTGA+AGG + chr5_3:2998227-2998246 None:intergenic 25.0%
! GGAATTTGTGGTATAAATAA+AGG + chr5_3:2998284-2998303 None:intergenic 25.0%
! ATCATCATAATTGGAATTTG+TGG + chr5_3:2998296-2998315 None:intergenic 25.0%
! ATCATCATCATCATCATAAT+TGG + chr5_3:2998305-2998324 None:intergenic 25.0%
!!! TTTTTTACATGAATAGATGC+AGG - chr5_3:2998357-2998376 Msa0791910:CDS 25.0%
! AATGAAACAAGAGAAGAAAA+AGG - chr5_3:2998447-2998466 Msa0791910:CDS 25.0%
! GTAACAAATGCAAAAAATCA+GGG - chr5_3:2998758-2998777 Msa0791910:intron 25.0%
! TAACAAATGCAAAAAATCAG+GGG - chr5_3:2998759-2998778 Msa0791910:intron 25.0%
!! TTCTCAAAAGCAAAGTATTA+TGG - chr5_3:2999161-2999180 Msa0791910:exon 25.0%
!! TTGTGTTGTGTTATCTTTTT+GGG + chr5_3:2997745-2997764 None:intergenic 25.0%
!!! CAAAGTATTGTTTCCTTTTT+CGG + chr5_3:2997789-2997808 None:intergenic 25.0%
! ATCTTTAATTCAGAATCTGA+AGG + chr5_3:2998227-2998246 None:intergenic 25.0%
! GGAATTTGTGGTATAAATAA+AGG + chr5_3:2998284-2998303 None:intergenic 25.0%
! ATCATCATAATTGGAATTTG+TGG + chr5_3:2998296-2998315 None:intergenic 25.0%
! ATCATCATCATCATCATAAT+TGG + chr5_3:2998305-2998324 None:intergenic 25.0%
!!! TTTTTTACATGAATAGATGC+AGG - chr5_3:2998357-2998376 Msa0791910:CDS 25.0%
! AATGAAACAAGAGAAGAAAA+AGG - chr5_3:2998447-2998466 Msa0791910:CDS 25.0%
! GTAACAAATGCAAAAAATCA+GGG - chr5_3:2998758-2998777 Msa0791910:intron 25.0%
! TAACAAATGCAAAAAATCAG+GGG - chr5_3:2998759-2998778 Msa0791910:intron 25.0%
!! TTCTCAAAAGCAAAGTATTA+TGG - chr5_3:2999161-2999180 Msa0791910:exon 25.0%
CTTCTGAATTACCTCAATTA+GGG - chr5_3:2998078-2998097 Msa0791910:CDS 30.0%
!!! TTTTTTCCTGTTTCTTGTTG+TGG - chr5_3:2998252-2998271 Msa0791910:CDS 30.0%
!! TTTTTCCTGTTTCTTGTTGT+GGG - chr5_3:2998253-2998272 Msa0791910:CDS 30.0%
! TTACAAGTTTTCATCTTGGA+GGG + chr5_3:2998484-2998503 None:intergenic 30.0%
! ATTACAAGTTTTCATCTTGG+AGG + chr5_3:2998485-2998504 None:intergenic 30.0%
TACTTCACATCATCATGTTA+TGG - chr5_3:2998636-2998655 Msa0791910:intron 30.0%
AATAATGCATCTCTTGTTAC+TGG - chr5_3:2998673-2998692 Msa0791910:intron 30.0%
ATAATGCATCTCTTGTTACT+GGG - chr5_3:2998674-2998693 Msa0791910:intron 30.0%
GTTTAACAAAGAGACTAATG+TGG - chr5_3:2998696-2998715 Msa0791910:intron 30.0%
GGTAACAAATGCAAAAAATC+AGG - chr5_3:2998757-2998776 Msa0791910:intron 30.0%
ATTGTTACAAGAGTTTGAGA+AGG - chr5_3:2998789-2998808 Msa0791910:intron 30.0%
GAATTCTGAATTCTCACATT+AGG + chr5_3:2998880-2998899 None:intergenic 30.0%
GAATTCTGTTGATCTTAACA+TGG - chr5_3:2998894-2998913 Msa0791910:CDS 30.0%
! GTTGTGTTGTGTTATCTTTT+TGG + chr5_3:2997746-2997765 None:intergenic 30.0%
CTTCTGAATTACCTCAATTA+GGG - chr5_3:2998078-2998097 Msa0791910:CDS 30.0%
!!! TTTTTTCCTGTTTCTTGTTG+TGG - chr5_3:2998252-2998271 Msa0791910:CDS 30.0%
!! TTTTTCCTGTTTCTTGTTGT+GGG - chr5_3:2998253-2998272 Msa0791910:CDS 30.0%
! TTACAAGTTTTCATCTTGGA+GGG + chr5_3:2998484-2998503 None:intergenic 30.0%
! ATTACAAGTTTTCATCTTGG+AGG + chr5_3:2998485-2998504 None:intergenic 30.0%
TACTTCACATCATCATGTTA+TGG - chr5_3:2998636-2998655 Msa0791910:intron 30.0%
AATAATGCATCTCTTGTTAC+TGG - chr5_3:2998673-2998692 Msa0791910:intron 30.0%
ATAATGCATCTCTTGTTACT+GGG - chr5_3:2998674-2998693 Msa0791910:intron 30.0%
GTTTAACAAAGAGACTAATG+TGG - chr5_3:2998696-2998715 Msa0791910:intron 30.0%
GGTAACAAATGCAAAAAATC+AGG - chr5_3:2998757-2998776 Msa0791910:intron 30.0%
ATTGTTACAAGAGTTTGAGA+AGG - chr5_3:2998789-2998808 Msa0791910:intron 30.0%
GAATTCTGAATTCTCACATT+AGG + chr5_3:2998880-2998899 None:intergenic 30.0%
GAATTCTGTTGATCTTAACA+TGG - chr5_3:2998894-2998913 Msa0791910:CDS 30.0%
ACAATAACAACCACCGAAAA+AGG - chr5_3:2997773-2997792 Msa0791910:three_prime_UTR 35.0%
!!! AGTATTGTTTCCTTTTTCGG+TGG + chr5_3:2997786-2997805 None:intergenic 35.0%
!!! CTGTTTTTTTCTTCACGTCT+TGG + chr5_3:2997998-2998017 None:intergenic 35.0%
GCTTCTGAATTACCTCAATT+AGG - chr5_3:2998077-2998096 Msa0791910:CDS 35.0%
TCCTAATCTACCTAATCTCT+TGG - chr5_3:2998112-2998131 Msa0791910:CDS 35.0%
CCTAATCTACCTAATCTCTT+GGG - chr5_3:2998113-2998132 Msa0791910:CDS 35.0%
!! TTTTCCTGTTTCTTGTTGTG+GGG - chr5_3:2998254-2998273 Msa0791910:CDS 35.0%
TTACATGAATAGATGCAGGA+TGG - chr5_3:2998361-2998380 Msa0791910:CDS 35.0%
TTCAATTCCAATTCATCCAC+CGG + chr5_3:2998580-2998599 None:intergenic 35.0%
TGAAGTAGAATCTTCAGGTA+TGG + chr5_3:2998623-2998642 None:intergenic 35.0%
TGATGTGAAGTAGAATCTTC+AGG + chr5_3:2998628-2998647 None:intergenic 35.0%
AAAGAGGATTGAAGTTTGCA+TGG - chr5_3:2998735-2998754 Msa0791910:intron 35.0%
AAGAGGATTGAAGTTTGCAT+GGG - chr5_3:2998736-2998755 Msa0791910:intron 35.0%
TGTTGATCTTAACATGGTTC+AGG - chr5_3:2998900-2998919 Msa0791910:CDS 35.0%
GTTGATCTTAACATGGTTCA+GGG - chr5_3:2998901-2998920 Msa0791910:CDS 35.0%
ATTGTATATATGTGTCAGCG+TGG - chr5_3:2999080-2999099 Msa0791910:CDS 35.0%
ACAATAACAACCACCGAAAA+AGG - chr5_3:2997773-2997792 Msa0791910:three_prime_UTR 35.0%
!!! AGTATTGTTTCCTTTTTCGG+TGG + chr5_3:2997786-2997805 None:intergenic 35.0%
!!! CTGTTTTTTTCTTCACGTCT+TGG + chr5_3:2997998-2998017 None:intergenic 35.0%
GCTTCTGAATTACCTCAATT+AGG - chr5_3:2998077-2998096 Msa0791910:CDS 35.0%
TCCTAATCTACCTAATCTCT+TGG - chr5_3:2998112-2998131 Msa0791910:CDS 35.0%
CCTAATCTACCTAATCTCTT+GGG - chr5_3:2998113-2998132 Msa0791910:CDS 35.0%
!! TTTTCCTGTTTCTTGTTGTG+GGG - chr5_3:2998254-2998273 Msa0791910:CDS 35.0%
TTACATGAATAGATGCAGGA+TGG - chr5_3:2998361-2998380 Msa0791910:CDS 35.0%
TTCAATTCCAATTCATCCAC+CGG + chr5_3:2998580-2998599 None:intergenic 35.0%
TGAAGTAGAATCTTCAGGTA+TGG + chr5_3:2998623-2998642 None:intergenic 35.0%
TGATGTGAAGTAGAATCTTC+AGG + chr5_3:2998628-2998647 None:intergenic 35.0%
AAAGAGGATTGAAGTTTGCA+TGG - chr5_3:2998735-2998754 Msa0791910:intron 35.0%
AAGAGGATTGAAGTTTGCAT+GGG - chr5_3:2998736-2998755 Msa0791910:intron 35.0%
TGTTGATCTTAACATGGTTC+AGG - chr5_3:2998900-2998919 Msa0791910:CDS 35.0%
GTTGATCTTAACATGGTTCA+GGG - chr5_3:2998901-2998920 Msa0791910:CDS 35.0%
ATTGTATATATGTGTCAGCG+TGG - chr5_3:2999080-2999099 Msa0791910:CDS 35.0%
TGTTGAGCAAACCCTAATTG+AGG + chr5_3:2998092-2998111 None:intergenic 40.0%
CCCAAGAGATTAGGTAGATT+AGG + chr5_3:2998116-2998135 None:intergenic 40.0%
TGAAGTTGACCCAAGAGATT+AGG + chr5_3:2998125-2998144 None:intergenic 40.0%
AGCTAGAGAAAGTAAGAGCA+GGG - chr5_3:2998404-2998423 Msa0791910:CDS 40.0%
ATCACTTGACTCAGATTCAG+AGG + chr5_3:2998533-2998552 None:intergenic 40.0%
TCTTCAGGTATGGATAGCAT+AGG + chr5_3:2998613-2998632 None:intergenic 40.0%
CAAGAGTTTGAGAAGGTAGT+AGG - chr5_3:2998796-2998815 Msa0791910:intron 40.0%
TGTTGTTGGATGCAAGTGTA+TGG - chr5_3:2998837-2998856 Msa0791910:intron 40.0%
GTTGTTGGATGCAAGTGTAT+GGG - chr5_3:2998838-2998857 Msa0791910:intron 40.0%
TTGTTGGATGCAAGTGTATG+GGG - chr5_3:2998839-2998858 Msa0791910:intron 40.0%
! ACCATTGTGGCTAGGTTTTT+AGG - chr5_3:2998991-2999010 Msa0791910:CDS 40.0%
! CCATTGTGGCTAGGTTTTTA+GGG - chr5_3:2998992-2999011 Msa0791910:CDS 40.0%
!! CATTGTGGCTAGGTTTTTAG+GGG - chr5_3:2998993-2999012 Msa0791910:CDS 40.0%
GGATTACAAAGATGTGGGTA+CGG - chr5_3:2999017-2999036 Msa0791910:CDS 40.0%
TGTTGAGCAAACCCTAATTG+AGG + chr5_3:2998092-2998111 None:intergenic 40.0%
CCCAAGAGATTAGGTAGATT+AGG + chr5_3:2998116-2998135 None:intergenic 40.0%
TGAAGTTGACCCAAGAGATT+AGG + chr5_3:2998125-2998144 None:intergenic 40.0%
AGCTAGAGAAAGTAAGAGCA+GGG - chr5_3:2998404-2998423 Msa0791910:CDS 40.0%
ATCACTTGACTCAGATTCAG+AGG + chr5_3:2998533-2998552 None:intergenic 40.0%
TCTTCAGGTATGGATAGCAT+AGG + chr5_3:2998613-2998632 None:intergenic 40.0%
CAAGAGTTTGAGAAGGTAGT+AGG - chr5_3:2998796-2998815 Msa0791910:intron 40.0%
TGTTGTTGGATGCAAGTGTA+TGG - chr5_3:2998837-2998856 Msa0791910:intron 40.0%
GTTGTTGGATGCAAGTGTAT+GGG - chr5_3:2998838-2998857 Msa0791910:intron 40.0%
TTGTTGGATGCAAGTGTATG+GGG - chr5_3:2998839-2998858 Msa0791910:intron 40.0%
! ACCATTGTGGCTAGGTTTTT+AGG - chr5_3:2998991-2999010 Msa0791910:CDS 40.0%
! CCATTGTGGCTAGGTTTTTA+GGG - chr5_3:2998992-2999011 Msa0791910:CDS 40.0%
!! CATTGTGGCTAGGTTTTTAG+GGG - chr5_3:2998993-2999012 Msa0791910:CDS 40.0%
GGATTACAAAGATGTGGGTA+CGG - chr5_3:2999017-2999036 Msa0791910:CDS 40.0%
!! AAAAAAGTACCGCGAGGCTT+TGG + chr5_3:2998148-2998167 None:intergenic 45.0%
GAAACCCCACAACAAGAAAC+AGG + chr5_3:2998261-2998280 None:intergenic 45.0%
CATGAATAGATGCAGGATGG+TGG - chr5_3:2998364-2998383 Msa0791910:CDS 45.0%
GAGCTAGAGAAAGTAAGAGC+AGG - chr5_3:2998403-2998422 Msa0791910:CDS 45.0%
GCTAGAGAAAGTAAGAGCAG+GGG - chr5_3:2998405-2998424 Msa0791910:CDS 45.0%
TTGTGATGTTGCCACAAAGC+CGG - chr5_3:2998558-2998577 Msa0791910:CDS 45.0%
TTATCCCTGCAGCTCAAAAG+AGG - chr5_3:2998719-2998738 Msa0791910:intron 45.0%
! CAATCCTCTTTTGAGCTGCA+GGG + chr5_3:2998726-2998745 None:intergenic 45.0%
! TCAATCCTCTTTTGAGCTGC+AGG + chr5_3:2998727-2998746 None:intergenic 45.0%
!! GAGAAGGTAGTAGGTGTTGA+AGG - chr5_3:2998805-2998824 Msa0791910:intron 45.0%
!! GTAGTAGGTGTTGAAGGTGA+AGG - chr5_3:2998811-2998830 Msa0791910:intron 45.0%
!! GAAGGTGAAGGTGTTGTTGT+TGG - chr5_3:2998823-2998842 Msa0791910:intron 45.0%
AGAGGATGTGGATACCATTG+TGG - chr5_3:2998978-2998997 Msa0791910:CDS 45.0%
ATGTGGATACCATTGTGGCT+AGG - chr5_3:2998983-2999002 Msa0791910:CDS 45.0%
CCCTAAAAACCTAGCCACAA+TGG + chr5_3:2998995-2999014 None:intergenic 45.0%
AGGGGAGGATTACAAAGATG+TGG - chr5_3:2999011-2999030 Msa0791910:CDS 45.0%
GGGGAGGATTACAAAGATGT+GGG - chr5_3:2999012-2999031 Msa0791910:CDS 45.0%
!! AAAAAAGTACCGCGAGGCTT+TGG + chr5_3:2998148-2998167 None:intergenic 45.0%
GAAACCCCACAACAAGAAAC+AGG + chr5_3:2998261-2998280 None:intergenic 45.0%
CATGAATAGATGCAGGATGG+TGG - chr5_3:2998364-2998383 Msa0791910:CDS 45.0%
GAGCTAGAGAAAGTAAGAGC+AGG - chr5_3:2998403-2998422 Msa0791910:CDS 45.0%
GCTAGAGAAAGTAAGAGCAG+GGG - chr5_3:2998405-2998424 Msa0791910:CDS 45.0%
TTGTGATGTTGCCACAAAGC+CGG - chr5_3:2998558-2998577 Msa0791910:CDS 45.0%
TTATCCCTGCAGCTCAAAAG+AGG - chr5_3:2998719-2998738 Msa0791910:intron 45.0%
! CAATCCTCTTTTGAGCTGCA+GGG + chr5_3:2998726-2998745 None:intergenic 45.0%
! TCAATCCTCTTTTGAGCTGC+AGG + chr5_3:2998727-2998746 None:intergenic 45.0%
!! GAGAAGGTAGTAGGTGTTGA+AGG - chr5_3:2998805-2998824 Msa0791910:intron 45.0%
!! GTAGTAGGTGTTGAAGGTGA+AGG - chr5_3:2998811-2998830 Msa0791910:intron 45.0%
!! GAAGGTGAAGGTGTTGTTGT+TGG - chr5_3:2998823-2998842 Msa0791910:intron 45.0%
AGAGGATGTGGATACCATTG+TGG - chr5_3:2998978-2998997 Msa0791910:CDS 45.0%
ATGTGGATACCATTGTGGCT+AGG - chr5_3:2998983-2999002 Msa0791910:CDS 45.0%
CCCTAAAAACCTAGCCACAA+TGG + chr5_3:2998995-2999014 None:intergenic 45.0%
AGGGGAGGATTACAAAGATG+TGG - chr5_3:2999011-2999030 Msa0791910:CDS 45.0%
GGGGAGGATTACAAAGATGT+GGG - chr5_3:2999012-2999031 Msa0791910:CDS 45.0%
!! TAATAAAAATAAAAGAAAAA+GGG + chr5_3:2998175-2998194 None:intergenic 5.0%
!! ATAATAAAAATAAAAGAAAA+AGG + chr5_3:2998176-2998195 None:intergenic 5.0%
!! TAATAAAAATAAAAGAAAAA+GGG + chr5_3:2998175-2998194 None:intergenic 5.0%
!! ATAATAAAAATAAAAGAAAA+AGG + chr5_3:2998176-2998195 None:intergenic 5.0%
GACTATCACCGTCATCGTCA+TGG - chr5_3:2997833-2997852 Msa0791910:three_prime_UTR 50.0%
TATCACCGTCATCGTCATGG+AGG - chr5_3:2997836-2997855 Msa0791910:three_prime_UTR 50.0%
GGAAACCTCCATGACGATGA+CGG + chr5_3:2997844-2997863 None:intergenic 50.0%
GTCATCGTCATGGAGGTTTC+CGG - chr5_3:2997843-2997862 Msa0791910:three_prime_UTR 50.0%
GTAGGTTGTACGACGGAGAA+CGG + chr5_3:2997871-2997890 None:intergenic 50.0%
CGGAGATGTAGGTTGTACGA+CGG + chr5_3:2997878-2997897 None:intergenic 50.0%
CGTCGTACAACCTACATCTC+CGG - chr5_3:2997876-2997895 Msa0791910:three_prime_UTR 50.0%
AGGAACAACGCCATGAGAAC+GGG + chr5_3:2997916-2997935 None:intergenic 50.0%
GAGGAACAACGCCATGAGAA+CGG + chr5_3:2997917-2997936 None:intergenic 50.0%
GTTCTCATGGCGTTGTTCCT+CGG - chr5_3:2997916-2997935 Msa0791910:three_prime_UTR 50.0%
! GGGTCTGGTTTCCATGATGA+GGG - chr5_3:2997957-2997976 Msa0791910:CDS 50.0%
TCAACTTCACCAAAGCCTCG+CGG - chr5_3:2998136-2998155 Msa0791910:CDS 50.0%
GAAAGTAAGAGCAGGGGAGA+AGG - chr5_3:2998411-2998430 Msa0791910:CDS 50.0%
!! CAATTCATCCACCGGCTTTG+TGG + chr5_3:2998572-2998591 None:intergenic 50.0%
CACAAAGCCGGTGGATGAAT+TGG - chr5_3:2998570-2998589 Msa0791910:CDS 50.0%
CCAATGCAGAGAGGGTTACT+TGG + chr5_3:2998949-2998968 None:intergenic 50.0%
CCAAGTAACCCTCTCTGCAT+TGG - chr5_3:2998946-2998965 Msa0791910:CDS 50.0%
AACCCTCTCTGCATTGGAGT+TGG - chr5_3:2998952-2998971 Msa0791910:CDS 50.0%
GACCAACTCCAATGCAGAGA+GGG + chr5_3:2998957-2998976 None:intergenic 50.0%
AGACCAACTCCAATGCAGAG+AGG + chr5_3:2998958-2998977 None:intergenic 50.0%
! CTGCATTGGAGTTGGTCTAG+AGG - chr5_3:2998960-2998979 Msa0791910:CDS 50.0%
! TGGAGTTGGTCTAGAGGATG+TGG - chr5_3:2998966-2998985 Msa0791910:CDS 50.0%
!! TGTGGCTAGGTTTTTAGGGG+AGG - chr5_3:2998996-2999015 Msa0791910:CDS 50.0%
GACTATCACCGTCATCGTCA+TGG - chr5_3:2997833-2997852 Msa0791910:three_prime_UTR 50.0%
TATCACCGTCATCGTCATGG+AGG - chr5_3:2997836-2997855 Msa0791910:three_prime_UTR 50.0%
GGAAACCTCCATGACGATGA+CGG + chr5_3:2997844-2997863 None:intergenic 50.0%
GTCATCGTCATGGAGGTTTC+CGG - chr5_3:2997843-2997862 Msa0791910:three_prime_UTR 50.0%
GTAGGTTGTACGACGGAGAA+CGG + chr5_3:2997871-2997890 None:intergenic 50.0%
CGGAGATGTAGGTTGTACGA+CGG + chr5_3:2997878-2997897 None:intergenic 50.0%
CGTCGTACAACCTACATCTC+CGG - chr5_3:2997876-2997895 Msa0791910:three_prime_UTR 50.0%
AGGAACAACGCCATGAGAAC+GGG + chr5_3:2997916-2997935 None:intergenic 50.0%
GAGGAACAACGCCATGAGAA+CGG + chr5_3:2997917-2997936 None:intergenic 50.0%
GTTCTCATGGCGTTGTTCCT+CGG - chr5_3:2997916-2997935 Msa0791910:three_prime_UTR 50.0%
! GGGTCTGGTTTCCATGATGA+GGG - chr5_3:2997957-2997976 Msa0791910:CDS 50.0%
TCAACTTCACCAAAGCCTCG+CGG - chr5_3:2998136-2998155 Msa0791910:CDS 50.0%
GAAAGTAAGAGCAGGGGAGA+AGG - chr5_3:2998411-2998430 Msa0791910:CDS 50.0%
!! CAATTCATCCACCGGCTTTG+TGG + chr5_3:2998572-2998591 None:intergenic 50.0%
CACAAAGCCGGTGGATGAAT+TGG - chr5_3:2998570-2998589 Msa0791910:CDS 50.0%
CCAATGCAGAGAGGGTTACT+TGG + chr5_3:2998949-2998968 None:intergenic 50.0%
CCAAGTAACCCTCTCTGCAT+TGG - chr5_3:2998946-2998965 Msa0791910:CDS 50.0%
AACCCTCTCTGCATTGGAGT+TGG - chr5_3:2998952-2998971 Msa0791910:CDS 50.0%
GACCAACTCCAATGCAGAGA+GGG + chr5_3:2998957-2998976 None:intergenic 50.0%
AGACCAACTCCAATGCAGAG+AGG + chr5_3:2998958-2998977 None:intergenic 50.0%
! CTGCATTGGAGTTGGTCTAG+AGG - chr5_3:2998960-2998979 Msa0791910:CDS 50.0%
! TGGAGTTGGTCTAGAGGATG+TGG - chr5_3:2998966-2998985 Msa0791910:CDS 50.0%
!! TGTGGCTAGGTTTTTAGGGG+AGG - chr5_3:2998996-2999015 Msa0791910:CDS 50.0%
ACAACCTACATCTCCGGCGT+TGG - chr5_3:2997882-2997901 Msa0791910:three_prime_UTR 55.0%
CAACCTACATCTCCGGCGTT+GGG - chr5_3:2997883-2997902 Msa0791910:three_prime_UTR 55.0%
CGTTGTTCCTCGGAGAGTGA+GGG - chr5_3:2997926-2997945 Msa0791910:three_prime_UTR 55.0%
ATAGACACCCTCACTCTCCG+AGG + chr5_3:2997936-2997955 None:intergenic 55.0%
!! TCGGAGAGTGAGGGTGTCTA+TGG - chr5_3:2997935-2997954 Msa0791910:three_prime_UTR 55.0%
!! CGGAGAGTGAGGGTGTCTAT+GGG - chr5_3:2997936-2997955 Msa0791910:three_prime_UTR 55.0%
!! GGAGAGTGAGGGTGTCTATG+GGG - chr5_3:2997937-2997956 Msa0791910:exon 55.0%
! GGGGTCTGGTTTCCATGATG+AGG - chr5_3:2997956-2997975 Msa0791910:CDS 55.0%
ACTGCACGTGACCCTCATCA+TGG + chr5_3:2997971-2997990 None:intergenic 55.0%
!! GGGGTGAAAAAAGTACCGCG+AGG + chr5_3:2998154-2998173 None:intergenic 55.0%
TGATGTTGCCACAAAGCCGG+TGG - chr5_3:2998561-2998580 Msa0791910:CDS 55.0%
ACAACCTACATCTCCGGCGT+TGG - chr5_3:2997882-2997901 Msa0791910:three_prime_UTR 55.0%
CAACCTACATCTCCGGCGTT+GGG - chr5_3:2997883-2997902 Msa0791910:three_prime_UTR 55.0%
CGTTGTTCCTCGGAGAGTGA+GGG - chr5_3:2997926-2997945 Msa0791910:three_prime_UTR 55.0%
ATAGACACCCTCACTCTCCG+AGG + chr5_3:2997936-2997955 None:intergenic 55.0%
!! TCGGAGAGTGAGGGTGTCTA+TGG - chr5_3:2997935-2997954 Msa0791910:three_prime_UTR 55.0%
!! CGGAGAGTGAGGGTGTCTAT+GGG - chr5_3:2997936-2997955 Msa0791910:three_prime_UTR 55.0%
!! GGAGAGTGAGGGTGTCTATG+GGG - chr5_3:2997937-2997956 Msa0791910:exon 55.0%
! GGGGTCTGGTTTCCATGATG+AGG - chr5_3:2997956-2997975 Msa0791910:CDS 55.0%
ACTGCACGTGACCCTCATCA+TGG + chr5_3:2997971-2997990 None:intergenic 55.0%
!! GGGGTGAAAAAAGTACCGCG+AGG + chr5_3:2998154-2998173 None:intergenic 55.0%
TGATGTTGCCACAAAGCCGG+TGG - chr5_3:2998561-2998580 Msa0791910:CDS 55.0%
TGTACGACGGAGAACGGTGC+CGG + chr5_3:2997865-2997884 None:intergenic 60.0%
AGTCCCAACGCCGGAGATGT+AGG + chr5_3:2997889-2997908 None:intergenic 60.0%
GGGACTCACACCCGTTCTCA+TGG - chr5_3:2997903-2997922 Msa0791910:three_prime_UTR 60.0%
GCGTTGTTCCTCGGAGAGTG+AGG - chr5_3:2997925-2997944 Msa0791910:three_prime_UTR 60.0%
!! GTGAGGGTGTCTATGGGGTC+TGG - chr5_3:2997942-2997961 Msa0791910:exon 60.0%
TGTACGACGGAGAACGGTGC+CGG + chr5_3:2997865-2997884 None:intergenic 60.0%
AGTCCCAACGCCGGAGATGT+AGG + chr5_3:2997889-2997908 None:intergenic 60.0%
GGGACTCACACCCGTTCTCA+TGG - chr5_3:2997903-2997922 Msa0791910:three_prime_UTR 60.0%
GCGTTGTTCCTCGGAGAGTG+AGG - chr5_3:2997925-2997944 Msa0791910:three_prime_UTR 60.0%
!! GTGAGGGTGTCTATGGGGTC+TGG - chr5_3:2997942-2997961 Msa0791910:exon 60.0%
ACGGGTGTGAGTCCCAACGC+CGG + chr5_3:2997898-2997917 None:intergenic 65.0%
ACGGGTGTGAGTCCCAACGC+CGG + chr5_3:2997898-2997917 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 2997744 2999271 2997744 ID=Msa0791910;Name=Msa0791910
chr5_3 mRNA 2997744 2999271 2997744 ID=Msa0791910-mRNA-1;Parent=Msa0791910;Name=Msa0791910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=108|1|1|1|1|1|2|212|330
chr5_3 exon 2997744 2998642 2997744 ID=Msa0791910-mRNA-1:exon:1266;Parent=Msa0791910-mRNA-1
chr5_3 exon 2998858 2999271 2998858 ID=Msa0791910-mRNA-1:exon:1265;Parent=Msa0791910-mRNA-1
chr5_3 five_prime_UTR 2999164 2999271 2999164 ID=Msa0791910-mRNA-1:five_prime_utr;Parent=Msa0791910-mRNA-1
chr5_3 CDS 2998858 2999163 2998858 ID=Msa0791910-mRNA-1:cds;Parent=Msa0791910-mRNA-1
chr5_3 CDS 2997956 2998642 2997956 ID=Msa0791910-mRNA-1:cds;Parent=Msa0791910-mRNA-1
chr5_3 three_prime_UTR 2997744 2997955 2997744 ID=Msa0791910-mRNA-1:three_prime_utr;Parent=Msa0791910-mRNA-1
Gene Sequence

>Msa0791910

ATGGAGGTTTCCGGCACCGTTCTCCGTCGTACAACCTACATCTCCGGCGTTGGGACTCACACCCGTTCTCATGGCGTTGTTCCTCGGAGAGTGAGGGTGTCTATGGGGTCTGGTTTCCATGATGAGGGTCACGTGCAGTATTACCAAGACGTGAAGAAAAAAACAGAAACTGTTATCATAAGCAACAAGAAGAAGATGAAATTGCTCAAACGTCTCTCTAAAAACGCTTCTGAATTACCTCAATTAGGGTTTGCTCAACATCCTAATCTACCTAATCTCTTGGGTCAACTTCACCAAAGCCTCGCGATGCAGGATGGTGGTGAAGAATTACTTAGAGAGCTAGAGAAAGTAAGAGCAGGGGAGAAGGAATTGAAGAAAAAAATGAAACAAGAGAAGAAAAAGGCTAAACTAAAACCCTCCAAGATGAAAACTTGTAATAAATCTGAATCGTCGTCATCTTCATCCTCTGAATCTGAGTCAAGTGATAGTGATTGTGATGTTGCCACAAAGCCGGTGGATGAATTGGAATTGAAGCAGAAGCAACCTATGCTATCCATACCTGAAGATTCTACTTCACATCATCATGTTATGGATGTGTGCACTACAAATAATGCATCTCTTGTTACTGGGTTTAACAAAGAGACTAATGTGGTTATCCCTGCAGCTCAAAAGAGGATTGAAGTTTGCATGGGTAACAAATGCAAAAAATCAGGGGCTGCTACATTGTTACAAGAGTTTGAGAAGGTAGTAGGTGTTGAAGGTGAAGGTGTTGTTGTTGGATGCAAGTGTATGGGGAAGTGTAAAACTGCTCCTAATGTGAGAATTCAGAATTCTGTTGATCTTAACATGGTTCAGGGAATTGATGATTCTGTTAAAATTCCAAGTAACCCTCTCTGCATTGGAGTTGGTCTAGAGGATGTGGATACCATTGTGGCTAGGTTTTTAGGGGAGGATTACAAAGATGTGGGTACGGTTGCTGCAACTTCTTCATGA

Protein sequence

>Msa0791910

MEVSGTVLRRTTYISGVGTHTRSHGVVPRRVRVSMGSGFHDEGHVQYYQDVKKKTETVIISNKKKMKLLKRLSKNASELPQLGFAQHPNLPNLLGQLHQSLAMQDGGEELLRELEKVRAGEKELKKKMKQEKKKAKLKPSKMKTCNKSESSSSSSSESESSDSDCDVATKPVDELELKQKQPMLSIPEDSTSHHHVMDVCTTNNASLVTGFNKETNVVIPAAQKRIEVCMGNKCKKSGAATLLQEFEKVVGVEGEGVVVGCKCMGKCKTAPNVRIQNSVDLNMVQGIDDSVKIPSNPLCIGVGLEDVDTIVARFLGEDYKDVGTVAATSS*