AlfalfaGEDB | Msa1306750

M. sativa cultivar zhongmu-4 / Msa1306750

KEGG: K14500
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1306750	XP_003630514.2	99.408	338	2	0	1	338	1	338	0.0	708

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1306750	sp\|F4I3M3\|BSK7_ARATH	77.515	338	74	1	1	338	1	336	0.0	552

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1306750	G7LHC7	99.408	338	2	0	1	338	1	338	0.0	708

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1306750	-0.813177	2.920448e-51	-8.615850e-47
Msa0001790	Msa1306750	0.800301	1.537037e-48	-8.615850e-47
Msa0010820	Msa1306750	0.807445	5.036352e-50	-8.615850e-47
Msa0012040	Msa1306750	0.852413	4.692475e-61	-8.615850e-47
Msa0014710	Msa1306750	0.825713	4.034099e-54	-8.615850e-47
Msa0014800	Msa1306750	0.840054	1.095421e-57	-8.615850e-47
Msa0015090	Msa1306750	0.819627	1.051697e-52	-8.615850e-47
Msa0017320	Msa1306750	0.806079	9.789794e-50	-8.615850e-47
Msa0018070	Msa1306750	0.805317	1.415197e-49	-8.615850e-47
Msa0025740	Msa1306750	0.830038	3.676571e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1306750	MtrunA17_Chr8g0386761	99.408	338	2	0	1	338	1	338	0.0	708
Msa1306750	MtrunA17_Chr8g0349041	79.641	334	66	2	1	334	1	332	0.0	555
Msa1306750	MtrunA17_Chr7g0247441	79.635	329	65	2	1	329	1	327	0.0	544
Msa1306750	MtrunA17_Chr4g0008911	73.860	329	84	2	1	329	1	327	3.44e-176	495
Msa1306750	MtrunA17_Chr4g0032361	71.642	335	90	2	1	333	1	332	5.37e-176	498
Msa1306750	MtrunA17_Chr5g0448561	66.883	308	101	1	29	335	55	362	7.91e-151	435
Msa1306750	MtrunA17_Chr4g0054861	66.554	296	99	0	43	338	45	340	2.74e-149	430
Msa1306750	MtrunA17_Chr2g0328731	55.512	254	58	4	80	333	2	200	5.58e-86	260
Msa1306750	MtrunA17_Chr8g0388941	33.762	311	177	7	36	320	49	356	2.25e-48	167
Msa1306750	MtrunA17_Chr2g0328171	35.831	307	163	9	41	316	57	360	9.57e-48	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1306750	AT1G63500.1	77.515	338	74	1	1	338	1	336	0.0	552
Msa1306750	AT5G41260.1	75.148	338	82	1	1	338	1	336	0.0	540
Msa1306750	AT4G00710.1	75.444	338	80	2	1	338	1	335	0.0	533
Msa1306750	AT4G00710.2	75.444	338	80	2	1	338	1	335	0.0	533
Msa1306750	AT1G01740.5	73.077	338	85	4	1	337	1	333	6.82e-177	499
Msa1306750	AT1G01740.2	73.077	338	85	4	1	337	1	333	7.06e-177	499
Msa1306750	AT1G01740.1	73.077	338	85	4	1	337	1	333	7.06e-177	499
Msa1306750	AT5G59010.1	71.045	335	91	1	1	335	1	329	5.55e-176	498
Msa1306750	AT3G54030.1	68.358	335	101	1	1	335	1	330	1.71e-166	474
Msa1306750	AT4G35230.1	69.310	290	89	0	40	329	55	344	5.37e-150	432

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Find 136 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGAAGCATGAAAGTTT+AGG	0.324320	8_4:+1684903	None:intergenic
AAAGAGACAAAGAAAGTGAA+AGG	0.559467	8_4:+1688300	None:intergenic
AAAGTGTAACTTACAGCTTT+GGG	0.454655	8_4:-1684319	Msa1306750:CDS
AAATGAAGACAATAATGTCG+AGG	0.615265	8_4:-1687332	Msa1306750:CDS
AAATTAGTTGAAGTGGTTAT+AGG	0.294769	8_4:-1682285	Msa1306750:three_prime_UTR
AAATTGATGGGCATCTGGCC+AGG	0.482173	8_4:+1687135	None:intergenic
AACAATAGACTCGAAGAAGA+AGG	0.514531	8_4:-1682716	Msa1306750:three_prime_UTR
AACCCTCTTTAAGTGCCACT+TGG	0.516596	8_4:+1682333	None:intergenic
AACGGTTCAACAAATCAGCC+TGG	0.560787	8_4:-1687153	Msa1306750:CDS
AAGAAACTTACATGGCTTGG+AGG	0.520648	8_4:+1684260	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGACAAAGAAAGTGAA+AGG	+	chr8_4:1681943-1681962	None:intergenic	30.0%
AGAAACATTAACAACCTTAC+GGG	+	chr8_4:1681987-1682006	None:intergenic	30.0%
AACAGGTAATGAAGCAAAAA+TGG	+	chr8_4:1682066-1682085	None:intergenic	30.0%
GCTGAGTCAATTTAATTCAA+CGG	+	chr8_4:1682205-1682224	None:intergenic	30.0%
AAATGAAGACAATAATGTCG+AGG	-	chr8_4:1682908-1682927	Msa1306750:intron	30.0%
AATGAAGACAATAATGTCGA+GGG	-	chr8_4:1682909-1682928	Msa1306750:intron	30.0%
GAAAATATAGTTTCTGAGCA+TGG	-	chr8_4:1683002-1683021	Msa1306750:intron	30.0%
CTCCAAATGTTGTCTATAAA+GGG	-	chr8_4:1683033-1683052	Msa1306750:intron	30.0%
TTCCCTTTATAGACAACATT+TGG	+	chr8_4:1683038-1683057	None:intergenic	30.0%
TAAAACCGACAAAAATACAG+AGG	+	chr8_4:1683258-1683277	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	1681920	1688342	1681920	ID=Msa1306750;Name=Msa1306750
chr8_4	mRNA	1681920	1688342	1681920	ID=Msa1306750-mRNA-1;Parent=Msa1306750;Name=Msa1306750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146\|1\|1\|1\|0.81\|0.66\|12\|800\|349
chr8_4	exon	1681920	1682543	1681920	ID=Msa1306750-mRNA-1:exon:509;Parent=Msa1306750-mRNA-1
chr8_4	exon	1682660	1682773	1682660	ID=Msa1306750-mRNA-1:exon:508;Parent=Msa1306750-mRNA-1
chr8_4	exon	1683233	1683384	1683233	ID=Msa1306750-mRNA-1:exon:507;Parent=Msa1306750-mRNA-1
chr8_4	exon	1683643	1683831	1683643	ID=Msa1306750-mRNA-1:exon:506;Parent=Msa1306750-mRNA-1
chr8_4	exon	1684271	1684356	1684271	ID=Msa1306750-mRNA-1:exon:505;Parent=Msa1306750-mRNA-1
chr8_4	exon	1684829	1684934	1684829	ID=Msa1306750-mRNA-1:exon:504;Parent=Msa1306750-mRNA-1
chr8_4	exon	1685624	1685757	1685624	ID=Msa1306750-mRNA-1:exon:503;Parent=Msa1306750-mRNA-1
chr8_4	exon	1685859	1685994	1685859	ID=Msa1306750-mRNA-1:exon:502;Parent=Msa1306750-mRNA-1
chr8_4	exon	1687132	1687355	1687132	ID=Msa1306750-mRNA-1:exon:501;Parent=Msa1306750-mRNA-1
chr8_4	exon	1687444	1687534	1687444	ID=Msa1306750-mRNA-1:exon:500;Parent=Msa1306750-mRNA-1
chr8_4	exon	1688008	1688075	1688008	ID=Msa1306750-mRNA-1:exon:499;Parent=Msa1306750-mRNA-1
chr8_4	exon	1688271	1688342	1688271	ID=Msa1306750-mRNA-1:exon:498;Parent=Msa1306750-mRNA-1
chr8_4	five_prime_UTR	1688271	1688342	1688271	ID=Msa1306750-mRNA-1:five_prime_utr;Parent=Msa1306750-mRNA-1
chr8_4	five_prime_UTR	1688008	1688075	1688008	ID=Msa1306750-mRNA-1:five_prime_utr;Parent=Msa1306750-mRNA-1
chr8_4	five_prime_UTR	1687529	1687534	1687529	ID=Msa1306750-mRNA-1:five_prime_utr;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1687444	1687528	1687444	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1687132	1687355	1687132	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1685859	1685994	1685859	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1685624	1685757	1685624	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1684829	1684934	1684829	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1684271	1684356	1684271	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1683643	1683831	1683643	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	CDS	1683295	1683384	1683295	ID=Msa1306750-mRNA-1:cds;Parent=Msa1306750-mRNA-1
chr8_4	three_prime_UTR	1683233	1683294	1683233	ID=Msa1306750-mRNA-1:three_prime_utr;Parent=Msa1306750-mRNA-1
chr8_4	three_prime_UTR	1682660	1682773	1682660	ID=Msa1306750-mRNA-1:three_prime_utr;Parent=Msa1306750-mRNA-1
chr8_4	three_prime_UTR	1681920	1682543	1681920	ID=Msa1306750-mRNA-1:three_prime_utr;Parent=Msa1306750-mRNA-1

Gene Sequence

>Msa1306750

ATGGGTTGTAATTTCTCAAAGTACTCAACATGCTGTTGTAGTACTGAGCAAGGTGGCGTTCAGGTTCCTGAGGCAAACATTGAGGAAAATGAAGACAATAATGTCGAGGGCAATGGCTTGGCGTCTTTTCGTGAATATACAATTGATCAGCTTAGGAAGGCTACCTCTGGATTTGCAATTGAAAATATAGTTTCTGAGCATGGTGAAAAGGCTCCAAATGTTGTCTATAAAGGGAAACTTGAAAATCAAGTGCGTATTGCGGTCAAACGGTTCAACAAATCAGCCTGGCCAGATGCCCATCAATTTTTGGAAGAGGCCAGAGCTGTTGGCCAGCTAAGGAGCCAAAGATTGGCAAATCTGCTTGGATGTTGCTGTGAAGGTGATGAAAGGTTGCTTGTATCAGAATATATGTCCAATGATACTTTGGCAAAGCACTTGTTCCATTGGGAAACTCAGCCCATGAAGTGGGCAATGCGGCTTAGAGTTGCTTTATACCTTGCCCAAGCTCTGGAGTACTGTACCAGCAAAGGACGTGCTCTGTACCATGATCTAAATGCTTACAGAGTTCTTTTTGATGATGACTTCAATCCTAAACTTTCATGCTTCGGTTTGATGAAAAACAGTCGAGATGGAAAAAGTTATAGTACAAATTTGGCATTTACACCACCAGAGTATCTCAGGACAGGTAGAGTTACTCCAGAAAGTGTAACTTACAGCTTTGGGACCCTTTTGCTCGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTGATCAGGGACAGGAACCTTCAGAGTCTAACAGACTCATGTTTAGAAGGACAATTTTCAGATGACGAGGGGACTGAATTGGTTCGTCTAGCTTCACGATGTTTACAATCTGAACCGAGAGAGCGTCCTAATCCGAGGTCACTGGTCACTGCTCTAATACCTTTGCAGAAAGATTCTGAGGTTCCTTCTCATGTGCTGATGGGCATACCTGATGGTAGTGCTGCTTTTCCCTTACTCCACTCGGAGAAGCTTGTCTACGCATGGATCTGA

Protein sequence

>Msa1306750

MGCNFSKYSTCCCSTEQGGVQVPEANIEENEDNNVEGNGLASFREYTIDQLRKATSGFAIENIVSEHGEKAPNVVYKGKLENQVRIAVKRFNKSAWPDAHQFLEEARAVGQLRSQRLANLLGCCCEGDERLLVSEYMSNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRVLFDDDFNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQSLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPRSLVTALIPLQKDSEVPSHVLMGIPDGSAAFPLLHSEKLVYAWI*