AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243860 MtrunA17_Chr8g0358201 93.285 417 6 2 1 395 1 417 0.0 779
Msa1243860 MtrunA17_Chr2g0292511 41.667 372 194 6 44 395 20 388 3.59e-89 275
Msa1243860 MtrunA17_Chr2g0286181 36.620 142 57 6 52 191 322 432 2.21e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243860 AT1G56050.1 77.284 405 71 1 12 395 17 421 0.0 617
Msa1243860 AT1G30580.1 39.623 371 203 3 44 395 20 388 4.63e-84 262

Find 91 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGCTCTATTGTACAAAA+AGG 0.208665 8_2:-30659816 None:intergenic
TAGAGCAACATATGATCTTT+TGG 0.234785 8_2:+30662033 Msa1243860:CDS
AACATTTGCCACATATATAA+TGG 0.237147 8_2:-30661268 None:intergenic
TTGCCATTGTTATTATAATA+AGG 0.243821 8_2:-30657645 None:intergenic
GATCATATGTTGCTCTAATT+AGG 0.267758 8_2:-30662027 None:intergenic
GAAGAAGAATATGAAAGTTT+TGG 0.293505 8_2:-30657763 None:intergenic
TTTCAAAGGATGAACTAAAC+TGG 0.308459 8_2:-30657680 None:intergenic
CTTGGTGCAGCACGAGAAAA+AGG 0.311357 8_2:+30663833 Msa1243860:CDS
CACATATATAATGGGTTTCA+TGG 0.318050 8_2:-30661259 None:intergenic
AGCAATATCTACAAACTCTA+TGG 0.339487 8_2:-30659919 None:intergenic
ACATTTGCCACATATATAAT+GGG 0.363510 8_2:-30661267 None:intergenic
AGCACTTGGAGACGAGAATC+TGG 0.379539 8_2:-30659858 None:intergenic
AAATTTAATGTATTACAATA+TGG 0.380056 8_2:-30664423 None:intergenic
ATAGATAAACACCTGAAGTA+TGG 0.386070 8_2:-30660148 None:intergenic
TCAAACAATGATTACGTTAC+GGG 0.387105 8_2:+30661315 Msa1243860:CDS
TGAAAACTATAACGAGCAAT+TGG 0.388670 8_2:-30664247 None:intergenic
ATAGAGTTTGTAGATATTGC+TGG 0.391580 8_2:+30659921 Msa1243860:CDS
ATAAAGGTGAAAAGATTGTT+TGG 0.391878 8_2:-30657731 None:intergenic
ACAAATATCTCTTCCTTACT+TGG 0.395897 8_2:+30664479 Msa1243860:three_prime_UTR
TAGTTCATCCTTTGAAATCA+AGG 0.408481 8_2:+30657686 Msa1243860:CDS
CATTTCCACTGATTCCCATC+TGG 0.411104 8_2:-30664184 None:intergenic
AGGGTAGATTTGCCAACATT+AGG 0.411876 8_2:-30657829 None:intergenic
TCTGAAGTTTAACTAGCAAT+TGG 0.412439 8_2:-30664364 None:intergenic
ATGACATTATTCACGTGAAC+GGG 0.414513 8_2:+30660642 Msa1243860:CDS
CAAGAATATTTGAAATCTCT+TGG 0.415773 8_2:+30661980 Msa1243860:CDS
TGAGGTGGACTCCATACTTC+AGG 0.420128 8_2:+30660137 Msa1243860:CDS
TTTGTTGCTGCTGGTTCACT+TGG 0.447429 8_2:+30663815 Msa1243860:CDS
AGTCTCAAAGCTGGTATTGT+TGG 0.448030 8_2:+30657802 Msa1243860:CDS
TTCAAACAATGATTACGTTA+CGG 0.449166 8_2:+30661314 Msa1243860:CDS
TATGACGACTTTGTTGCTGC+TGG 0.459985 8_2:+30663806 Msa1243860:CDS
GGTGTTAGTGAAAGTGGTCT+TGG 0.465003 8_2:+30662001 Msa1243860:CDS
ACAGCAACAATCCCTACATT+TGG 0.466715 8_2:-30659834 None:intergenic
TACTGAGATCGGAGAGCACT+TGG 0.466988 8_2:-30659872 None:intergenic
TGTACAATAGAGCCAAATGT+AGG 0.476002 8_2:+30659822 Msa1243860:CDS
TGCACGATCTGTGTCATTGA+CGG 0.476131 8_2:+30661197 Msa1243860:CDS
AAGGCATGGACAATACTTGC+AGG 0.478540 8_2:+30662526 Msa1243860:CDS
TCACATGTTTAGGTTGAAAA+CGG 0.480742 8_2:+30659771 Msa1243860:intron
TATAATTTATGACCAAGATC+AGG 0.483234 8_2:+30664213 Msa1243860:three_prime_UTR
CAATCCATCGACTCCTAGCT+TGG 0.484576 8_2:-30664308 None:intergenic
GTTGCATCTGAGTTGCAGTC+TGG 0.485016 8_2:+30661348 Msa1243860:CDS
TCTCTTGGTGTTAGTGAAAG+TGG 0.487261 8_2:+30661995 Msa1243860:CDS
ATGACTGCACCTCAAGCTGC+TGG 0.490453 8_2:+30662883 Msa1243860:CDS
CACTGATTCCCATCTGGGAG+TGG 0.492202 8_2:-30664178 None:intergenic
GGATGCTGGAACCATTCGTT+GGG 0.497381 8_2:-30659898 None:intergenic
GATATTGCTGGTCTTGTAAA+GGG 0.502102 8_2:+30659933 Msa1243860:CDS
GTTTGAAGCATCAGCTAGAT+CGG 0.504962 8_2:-30661298 None:intergenic
ATTTCCACTGATTCCCATCT+GGG 0.505028 8_2:-30664183 None:intergenic
TGATATTGACGTTATCAACT+TGG 0.509555 8_2:+30660682 Msa1243860:CDS
TCGTTGGGATTTACTGAGAT+CGG 0.510037 8_2:-30659883 None:intergenic
TCTACAAACTCTATGGATGC+TGG 0.511938 8_2:-30659912 None:intergenic
ATTGTTGGTCTTCCTAATGT+TGG 0.520640 8_2:+30657817 Msa1243860:CDS
TGCTCCAAGCTAGGAGTCGA+TGG 0.526691 8_2:+30664304 Msa1243860:three_prime_UTR
CATGAAACCCATTATATATG+TGG 0.528753 8_2:+30661260 Msa1243860:CDS
GTGTTAGTGAAAGTGGTCTT+GGG 0.530590 8_2:+30662002 Msa1243860:CDS
AGAGGCAGAAAAGTCTGCAT+TGG 0.531186 8_2:+30661140 Msa1243860:CDS
AGATATTGCTGGTCTTGTAA+AGG 0.531314 8_2:+30659932 Msa1243860:CDS
AATTGTAACAATTTCAGCGC+AGG 0.536813 8_2:+30661371 Msa1243860:CDS
TCTCCTTATTATAATAACAA+TGG 0.537515 8_2:+30657642 Msa1243860:exon
CTTCAACTGTTACAGGGACT+CGG 0.538322 8_2:+30660090 Msa1243860:intron
ATTCATTCTGACTTTGAGAA+GGG 0.546250 8_2:+30662910 Msa1243860:CDS
TGGATGCTGGAACCATTCGT+TGG 0.546862 8_2:-30659899 None:intergenic
ATTTGAGGATGCTCCAAGCT+AGG 0.548147 8_2:+30664295 Msa1243860:three_prime_UTR
ATTCGTGTAGCACTCTTGGA+TGG 0.555782 8_2:+30661168 Msa1243860:CDS
TATTCATTCTGACTTTGAGA+AGG 0.556078 8_2:+30662909 Msa1243860:CDS
CTTGTAAAGGGTGCAAGTCA+AGG 0.556345 8_2:+30659945 Msa1243860:CDS
GATAACGTCAATATCAGACT+TGG 0.564980 8_2:-30660675 None:intergenic
CGAACTTACCACTCCCAGAT+GGG 0.568988 8_2:+30664170 Msa1243860:three_prime_UTR
GTACAATAGAGCCAAATGTA+GGG 0.572299 8_2:+30659823 Msa1243860:CDS
AATAAGGAGAAAGAATAGAG+AGG 0.577731 8_2:-30657629 None:intergenic
CACTCCCAGATGGGAATCAG+TGG 0.580008 8_2:+30664179 Msa1243860:three_prime_UTR
ATAAGCATGAGTCTCAAAGC+TGG 0.580496 8_2:+30657793 Msa1243860:CDS
TGATGCTTACCGTCTCTGCT+CGG 0.581066 8_2:-30662939 None:intergenic
TCGAACTTACCACTCCCAGA+TGG 0.584692 8_2:+30664169 Msa1243860:three_prime_UTR
GACTTACGACGGCATTGAAG+AGG 0.585086 8_2:-30657849 None:intergenic
TTCAAAGGATGAACTAAACT+GGG 0.586595 8_2:-30657679 None:intergenic
GCTTTCTGAACTAGCGCTTG+AGG 0.588528 8_2:+30661952 Msa1243860:CDS
TATATATGTGGCAAATGTTG+CGG 0.590385 8_2:+30661272 Msa1243860:CDS
TTTATCACATATTCGTGAGG+TGG 0.594065 8_2:+30660122 Msa1243860:CDS
GTCAATGACACAGATCGTGC+AGG 0.600391 8_2:-30661195 None:intergenic
AAAGACTACATTGTACAAGA+AGG 0.600557 8_2:+30664115 Msa1243860:CDS
AATGACATTATTCACGTGAA+CGG 0.602042 8_2:+30660641 Msa1243860:CDS
AATGTATCCACAGGAGACAA+AGG 0.607824 8_2:+30662507 Msa1243860:intron
ACTTACGACGGCATTGAAGA+GGG 0.619986 8_2:-30657848 None:intergenic
GGGTTTCATCCGAGCAGAGA+CGG 0.622621 8_2:+30662930 Msa1243860:CDS
TGTTTAGGTTGAAAACGGAA+AGG 0.629927 8_2:+30659776 Msa1243860:intron
ATAACGTCAATATCAGACTT+GGG 0.632121 8_2:-30660674 None:intergenic
TCTCAGTAAATCCCAACGAA+TGG 0.635797 8_2:+30659887 Msa1243860:CDS
TGAATAACTCCAGCAGCTTG+AGG 0.642652 8_2:-30662892 None:intergenic
AAAGGGTGCAAGTCAAGGCG+AGG 0.653560 8_2:+30659950 Msa1243860:CDS
ATCCACAGGAGACAAAGGCA+TGG 0.678907 8_2:+30662512 Msa1243860:intron
TTGCTAGTTAAACTTCAGAG+AGG 0.714905 8_2:+30664368 Msa1243860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATAAAACGATATTAA+AGG - chr8_2:30658537-30658556 None:intergenic 10.0%
!! TGTATTAATAATATATAAGT+AGG + chr8_2:30663324-30663343 Msa1243860:intron 10.0%
!!! TTATTTTCATTTATATAACT+TGG + chr8_2:30663906-30663925 Msa1243860:intron 10.0%
!! AAATTTAATGTATTACAATA+TGG - chr8_2:30664426-30664445 None:intergenic 10.0%
!!! TTTTTTTCAATTAAAAGTGA+GGG - chr8_2:30658493-30658512 None:intergenic 15.0%
!!! ATTTTTTTCAATTAAAAGTG+AGG - chr8_2:30658494-30658513 None:intergenic 15.0%
!!! ATATTTTTTTTTGTGCTAAA+AGG + chr8_2:30659472-30659491 Msa1243860:intron 15.0%
!!! ATTTTGAAAATTTTGTTTGT+AGG + chr8_2:30661116-30661135 Msa1243860:intron 15.0%
!!! TAGTTTTACAAATATCATAT+GGG + chr8_2:30661749-30661768 Msa1243860:intron 15.0%
!!! AATTTTCTCAATTTATTACT+GGG - chr8_2:30662190-30662209 None:intergenic 15.0%
!! TACAAAAATATTAACTACTA+TGG - chr8_2:30662404-30662423 None:intergenic 15.0%
!!! GAATATCATTTTCAAATAAT+TGG + chr8_2:30662607-30662626 Msa1243860:intron 15.0%
!! ACAGATTGTTAAATTTAAAT+TGG + chr8_2:30662646-30662665 Msa1243860:intron 15.0%
!!! TAATAATCTAAAACAAACAA+AGG + chr8_2:30663085-30663104 Msa1243860:intron 15.0%
!!! TAAATTTAGCTAATGTTTTA+CGG - chr8_2:30664060-30664079 None:intergenic 15.0%
!! TCTCCTTATTATAATAACAA+TGG + chr8_2:30657642-30657661 Msa1243860:exon 20.0%
!!! TTGCCATTGTTATTATAATA+AGG - chr8_2:30657648-30657667 None:intergenic 20.0%
!!! AGAAAATGACTTTTAGAATA+AGG + chr8_2:30658083-30658102 Msa1243860:intron 20.0%
!! TTGCATACATTTATTTAAAG+TGG - chr8_2:30658331-30658350 None:intergenic 20.0%
!!! TAAAATTGATTTTGAACGAA+TGG - chr8_2:30658406-30658425 None:intergenic 20.0%
!!! TTCAAAATCAATTTTAGTCA+TGG + chr8_2:30658410-30658429 Msa1243860:intron 20.0%
!!! TTGACACTTACATTTTAAAA+TGG + chr8_2:30658886-30658905 Msa1243860:intron 20.0%
!!! AGTATTTAGTTTTGTTTGTT+AGG + chr8_2:30658997-30659016 Msa1243860:intron 20.0%
!! GAAATGAGATTTGATATTTA+TGG + chr8_2:30659428-30659447 Msa1243860:intron 20.0%
!!! ATTTAATTATTGATTCTAGG+TGG - chr8_2:30659503-30659522 None:intergenic 20.0%
!!! GAGATTTAATTATTGATTCT+AGG - chr8_2:30659506-30659525 None:intergenic 20.0%
!!! TGGTTACTTTTTCAAAAATA+AGG + chr8_2:30659562-30659581 Msa1243860:intron 20.0%
!! AATGATAATAACAGATTCAA+AGG - chr8_2:30660780-30660799 None:intergenic 20.0%
!! CATGATTGTATAAATTTACT+TGG + chr8_2:30660844-30660863 Msa1243860:intron 20.0%
!!! ATTTTCAAAATCAAGTAACA+TGG - chr8_2:30661107-30661126 None:intergenic 20.0%
!!! CTAGTTTTACAAATATCATA+TGG + chr8_2:30661748-30661767 Msa1243860:intron 20.0%
!!! ATTTTCTCAATTTATTACTG+GGG - chr8_2:30662189-30662208 None:intergenic 20.0%
!!! GAATTTTCTCAATTTATTAC+TGG - chr8_2:30662191-30662210 None:intergenic 20.0%
!!! GAACATTTATTTTACTAGTT+AGG - chr8_2:30662427-30662446 None:intergenic 20.0%
!! AAATACAGAAGTTAAAATCT+AGG - chr8_2:30662460-30662479 None:intergenic 20.0%
!!! TAGAAAAACAACATTAGTTT+TGG - chr8_2:30662488-30662507 None:intergenic 20.0%
!! TTGAAAATGATATTCAGAAA+AGG - chr8_2:30662602-30662621 None:intergenic 20.0%
!! TTAAGACAAAAGAAAATTGA+CGG + chr8_2:30663398-30663417 Msa1243860:intron 20.0%
!!! AAATGTCTCTATTTTCTATT+AGG + chr8_2:30663778-30663797 Msa1243860:intron 20.0%
!!! TTTTGTTTGTGATAAATTTG+AGG + chr8_2:30664280-30664299 Msa1243860:three_prime_UTR 20.0%
!! TTCACTATGAACATTTTCAA+TGG - chr8_2:30657558-30657577 None:intergenic 25.0%
! ATAAAGGTGAAAAGATTGTT+TGG - chr8_2:30657734-30657753 None:intergenic 25.0%
!! AAACAATCTTTTCACCTTTA+TGG + chr8_2:30657733-30657752 Msa1243860:CDS 25.0%
!! GAAGAAGAATATGAAAGTTT+TGG - chr8_2:30657766-30657785 None:intergenic 25.0%
! TCAAAGAAAATATAGCGTTT+AGG - chr8_2:30658049-30658068 None:intergenic 25.0%
!! AAACGCTATATTTTCTTTGA+TGG + chr8_2:30658049-30658068 Msa1243860:intron 25.0%
!! AACGCTATATTTTCTTTGAT+GGG + chr8_2:30658050-30658069 Msa1243860:intron 25.0%
! CATGTTAAAATCATTTATGC+AGG - chr8_2:30658247-30658266 None:intergenic 25.0%
!!! TCTTGATTTAATTTTAGCCT+TGG + chr8_2:30658291-30658310 Msa1243860:intron 25.0%
!!! TGGTTTTGTAAAATTGATTG+TGG - chr8_2:30658386-30658405 None:intergenic 25.0%
! ATGTTTGATAAAACGAACAA+TGG - chr8_2:30658570-30658589 None:intergenic 25.0%
! GAACAATAATAAAAGCTCAT+TGG - chr8_2:30658730-30658749 None:intergenic 25.0%
! TACAAAATATTGTCCAATAG+TGG + chr8_2:30658767-30658786 Msa1243860:intron 25.0%
! TGTTAGGACTTTGAATAAAT+GGG + chr8_2:30658941-30658960 Msa1243860:intron 25.0%
!! TGAAATTTTTGAACTAGAGA+AGG + chr8_2:30659100-30659119 Msa1243860:intron 25.0%
!!! GTATTGTAGTTTTAACTCTT+AGG - chr8_2:30659253-30659272 None:intergenic 25.0%
!! GATATTTATGGTTTTTGTCA+CGG + chr8_2:30659440-30659459 Msa1243860:intron 25.0%
! TCAATAATTAAATCTCGTCT+AGG + chr8_2:30659510-30659529 Msa1243860:intron 25.0%
! TTACTTTCTTTATTGCACAA+AGG - chr8_2:30659628-30659647 None:intergenic 25.0%
!! TCGATTTCTGTTCTATATTT+TGG + chr8_2:30659654-30659673 Msa1243860:intron 25.0%
! TATTATAGCATTCAGAACAA+GGG - chr8_2:30659714-30659733 None:intergenic 25.0%
! TTATTATAGCATTCAGAACA+AGG - chr8_2:30659715-30659734 None:intergenic 25.0%
! TATTGTACAAAAAGGGAAAT+TGG - chr8_2:30659811-30659830 None:intergenic 25.0%
! AATCCTCTAGTATATAGAAA+AGG - chr8_2:30660231-30660250 None:intergenic 25.0%
! ACATATTGCTTAACAAAACT+TGG + chr8_2:30660507-30660526 Msa1243860:intron 25.0%
! AACAGATTCAAAGGATATAA+AGG - chr8_2:30660771-30660790 None:intergenic 25.0%
! ATTATCATTCCAAATGTTTG+TGG + chr8_2:30660791-30660810 Msa1243860:intron 25.0%
! AAGACTGGATAAACTAAAAA+AGG + chr8_2:30660989-30661008 Msa1243860:intron 25.0%
! AGACTGGATAAACTAAAAAA+GGG + chr8_2:30660990-30661009 Msa1243860:intron 25.0%
!!! AAAATTTTGTTTGTAGGAAG+AGG + chr8_2:30661122-30661141 Msa1243860:intron 25.0%
! ACATTTGCCACATATATAAT+GGG - chr8_2:30661270-30661289 None:intergenic 25.0%
! AACATTTGCCACATATATAA+TGG - chr8_2:30661271-30661290 None:intergenic 25.0%
! TTCAAACAATGATTACGTTA+CGG + chr8_2:30661314-30661333 Msa1243860:CDS 25.0%
! TGTTACTAAAAAACAGACAA+TGG - chr8_2:30661455-30661474 None:intergenic 25.0%
!!! TCTGTTTTTTAGTAACACTT+GGG + chr8_2:30661458-30661477 Msa1243860:intron 25.0%
! AAGAAAAAGAATATTCCAGA+GGG - chr8_2:30661530-30661549 None:intergenic 25.0%
!!! TGCATCTTGGTATTTTTAAA+TGG + chr8_2:30661688-30661707 Msa1243860:intron 25.0%
!! CAAGAATATTTGAAATCTCT+TGG + chr8_2:30661980-30661999 Msa1243860:CDS 25.0%
! CGGTGATAAATATCATTATA+TGG + chr8_2:30662352-30662371 Msa1243860:intron 25.0%
! ATATCAAAACCTAAGGATAA+AGG - chr8_2:30662677-30662696 None:intergenic 25.0%
! TCGGATTACATCATTAAAAA+GGG - chr8_2:30662779-30662798 None:intergenic 25.0%
! ATTAATAATAGTGCTTGACT+TGG + chr8_2:30662994-30663013 Msa1243860:intron 25.0%
!! TAATCTAAAACAAACAAAGG+TGG + chr8_2:30663088-30663107 Msa1243860:intron 25.0%
!!! TGTAATATTCTAGAATATGC+AGG + chr8_2:30663182-30663201 Msa1243860:intron 25.0%
!!! GTAATATTCTAGAATATGCA+GGG + chr8_2:30663183-30663202 Msa1243860:intron 25.0%
!!! TAATATTCTAGAATATGCAG+GGG + chr8_2:30663184-30663203 Msa1243860:intron 25.0%
!!! TAGGAAATTTTAGTATTGTC+TGG + chr8_2:30663593-30663612 Msa1243860:intron 25.0%
!!! AAATTTTAGTATTGTCTGGT+TGG + chr8_2:30663597-30663616 Msa1243860:intron 25.0%
! CAACTGCAAAAAACATATTT+AGG - chr8_2:30664083-30664102 None:intergenic 25.0%
! TATAATTTATGACCAAGATC+AGG + chr8_2:30664213-30664232 Msa1243860:three_prime_UTR 25.0%
! ATGAACATTTTCAATGGCTA+CGG - chr8_2:30657552-30657571 None:intergenic 30.0%
AATAAGGAGAAAGAATAGAG+AGG - chr8_2:30657632-30657651 None:intergenic 30.0%
TTCAAAGGATGAACTAAACT+GGG - chr8_2:30657682-30657701 None:intergenic 30.0%
TTTCAAAGGATGAACTAAAC+TGG - chr8_2:30657683-30657702 None:intergenic 30.0%
!! TAGTTCATCCTTTGAAATCA+AGG + chr8_2:30657686-30657705 Msa1243860:CDS 30.0%
!!! CCTTTGAAATCAAGGTTTTT+CGG + chr8_2:30657694-30657713 Msa1243860:CDS 30.0%
!! ACACTTTTAATCAGAAGTGT+CGG - chr8_2:30657910-30657929 None:intergenic 30.0%
TGGATTGAACAATAAATCCA+AGG - chr8_2:30658311-30658330 None:intergenic 30.0%
CACTTCAATTCAACTGAATT+TGG + chr8_2:30658360-30658379 Msa1243860:intron 30.0%
TTGTCAATCACTGAAAATAC+TGG - chr8_2:30658818-30658837 None:intergenic 30.0%
ATTCGCCATTCATATAAACA+GGG - chr8_2:30658913-30658932 None:intergenic 30.0%
AATTCGCCATTCATATAAAC+AGG - chr8_2:30658914-30658933 None:intergenic 30.0%
TGTTTATATGAATGGCGAAT+TGG + chr8_2:30658913-30658932 Msa1243860:intron 30.0%
GTGTTAGGACTTTGAATAAA+TGG + chr8_2:30658940-30658959 Msa1243860:intron 30.0%
! TAACTGACTTAACTAGTTAC+TGG - chr8_2:30658978-30658997 None:intergenic 30.0%
!!! TTCTGTTTTTGTTGCTTCTA+CGG + chr8_2:30659028-30659047 Msa1243860:intron 30.0%
! TGCTTCTACGGATTATAAAT+AGG + chr8_2:30659040-30659059 Msa1243860:intron 30.0%
ATATAGTCAACTGTACTTTG+TGG + chr8_2:30659349-30659368 Msa1243860:intron 30.0%
! ACAAGAGTGATTTTTCTCAA+CGG - chr8_2:30659542-30659561 None:intergenic 30.0%
TTGAGAAAAATCACTCTTGT+TGG + chr8_2:30659542-30659561 Msa1243860:intron 30.0%
AATAGTGATCTCACATGTTT+AGG + chr8_2:30659761-30659780 Msa1243860:intron 30.0%
!! TCACATGTTTAGGTTGAAAA+CGG + chr8_2:30659771-30659790 Msa1243860:intron 30.0%
!! TTGGCTCTATTGTACAAAAA+GGG - chr8_2:30659818-30659837 None:intergenic 30.0%
!! TTTGGCTCTATTGTACAAAA+AGG - chr8_2:30659819-30659838 None:intergenic 30.0%
AGCAATATCTACAAACTCTA+TGG - chr8_2:30659922-30659941 None:intergenic 30.0%
ATAGAGTTTGTAGATATTGC+TGG + chr8_2:30659921-30659940 Msa1243860:CDS 30.0%
TATCTTACTTCAACTGTTAC+AGG + chr8_2:30660083-30660102 Msa1243860:intron 30.0%
ATCTTACTTCAACTGTTACA+GGG + chr8_2:30660084-30660103 Msa1243860:intron 30.0%
! GTTTTTATCACATATTCGTG+AGG + chr8_2:30660119-30660138 Msa1243860:CDS 30.0%
ATAGATAAACACCTGAAGTA+TGG - chr8_2:30660151-30660170 None:intergenic 30.0%
ATGAAAGTAAACTGATGACA+AGG - chr8_2:30660182-30660201 None:intergenic 30.0%
! CTTCCTTTTCTATATACTAG+AGG + chr8_2:30660225-30660244 Msa1243860:intron 30.0%
!!! GCTGTTTTTATAAGCTAATC+TGG - chr8_2:30660355-30660374 None:intergenic 30.0%
TTCTGATTATAACAATGCCA+TGG + chr8_2:30660577-30660596 Msa1243860:intron 30.0%
TCTGATTATAACAATGCCAT+GGG + chr8_2:30660578-30660597 Msa1243860:intron 30.0%
AATGACATTATTCACGTGAA+CGG + chr8_2:30660641-30660660 Msa1243860:CDS 30.0%
ATAACGTCAATATCAGACTT+GGG - chr8_2:30660677-30660696 None:intergenic 30.0%
TGATATTGACGTTATCAACT+TGG + chr8_2:30660682-30660701 Msa1243860:CDS 30.0%
!! CACATATATAATGGGTTTCA+TGG - chr8_2:30661262-30661281 None:intergenic 30.0%
CATGAAACCCATTATATATG+TGG + chr8_2:30661260-30661279 Msa1243860:CDS 30.0%
TATATATGTGGCAAATGTTG+CGG + chr8_2:30661272-30661291 Msa1243860:CDS 30.0%
TCAAACAATGATTACGTTAC+GGG + chr8_2:30661315-30661334 Msa1243860:CDS 30.0%
!!! GTCTGTTTTTTAGTAACACT+TGG + chr8_2:30661457-30661476 Msa1243860:intron 30.0%
!!! CTGTTTTTTAGTAACACTTG+GGG + chr8_2:30661459-30661478 Msa1243860:intron 30.0%
GAAGAAAAAGAATATTCCAG+AGG - chr8_2:30661531-30661550 None:intergenic 30.0%
AAATCTAGACAATGGATCAA+AGG - chr8_2:30661576-30661595 None:intergenic 30.0%
TTTATCTAACACTGATACAC+AGG - chr8_2:30661601-30661620 None:intergenic 30.0%
AGTAACTTGAAACAGAACTA+TGG - chr8_2:30661635-30661654 None:intergenic 30.0%
TTAAAAATACCAAGATGCAG+AGG - chr8_2:30661687-30661706 None:intergenic 30.0%
AAGAACTCATTGAACAGAAA+AGG - chr8_2:30661719-30661738 None:intergenic 30.0%
! ACTTTCCATGAATTTTCAGT+AGG + chr8_2:30661780-30661799 Msa1243860:intron 30.0%
! CTTTCCATGAATTTTCAGTA+GGG + chr8_2:30661781-30661800 Msa1243860:intron 30.0%
AATTCCCTACTGAAAATTCA+TGG - chr8_2:30661788-30661807 None:intergenic 30.0%
ATGTGTTTATTTGTCTATGC+AGG + chr8_2:30661919-30661938 Msa1243860:intron 30.0%
GATCATATGTTGCTCTAATT+AGG - chr8_2:30662030-30662049 None:intergenic 30.0%
! TAGAGCAACATATGATCTTT+TGG + chr8_2:30662033-30662052 Msa1243860:CDS 30.0%
! AGAGCAACATATGATCTTTT+GGG + chr8_2:30662034-30662053 Msa1243860:CDS 30.0%
! TATCCTGTTTTATAAAGCAC+TGG + chr8_2:30662134-30662153 Msa1243860:intron 30.0%
CTATGGAATAACTAATCAAG+AGG - chr8_2:30662387-30662406 None:intergenic 30.0%
! TTAAAATCTAGGATGTCTTG+GGG - chr8_2:30662449-30662468 None:intergenic 30.0%
! GTTAAAATCTAGGATGTCTT+GGG - chr8_2:30662450-30662469 None:intergenic 30.0%
! AGTTAAAATCTAGGATGTCT+TGG - chr8_2:30662451-30662470 None:intergenic 30.0%
! TGTTTTTCTAATGTATCCAC+AGG + chr8_2:30662498-30662517 Msa1243860:intron 30.0%
TTCAGAGATATCAAAACCTA+AGG - chr8_2:30662684-30662703 None:intergenic 30.0%
GTCGGATTACATCATTAAAA+AGG - chr8_2:30662780-30662799 None:intergenic 30.0%
!! ACGTTATTATCGATTCTGTT+TGG - chr8_2:30662810-30662829 None:intergenic 30.0%
!! TTTTAAGTCTCTGTTGTACT+AGG + chr8_2:30662859-30662878 Msa1243860:intron 30.0%
! TATTCATTCTGACTTTGAGA+AGG + chr8_2:30662909-30662928 Msa1243860:CDS 30.0%
! ATTCATTCTGACTTTGAGAA+GGG + chr8_2:30662910-30662929 Msa1243860:CDS 30.0%
AGTAGGCTTAAATATGCAAA+TGG + chr8_2:30663341-30663360 Msa1243860:intron 30.0%
AGCTTCGAATTTAGAAAAGA+CGG + chr8_2:30663421-30663440 Msa1243860:intron 30.0%
TCAAACTATTAGACTACATG+CGG - chr8_2:30663499-30663518 None:intergenic 30.0%
! TTTGAGTTAGACCAAGAAAA+AGG + chr8_2:30663514-30663533 Msa1243860:intron 30.0%
! TTAGACCAAGAAAAAGGTAT+AGG + chr8_2:30663520-30663539 Msa1243860:intron 30.0%
CTTTGAACTGAATACATGAT+AGG + chr8_2:30663574-30663593 Msa1243860:intron 30.0%
TTTAACCAACTAAGTAGACA+TGG - chr8_2:30663628-30663647 None:intergenic 30.0%
!! AATATGAAAGCTAGTCTTGA+TGG + chr8_2:30663724-30663743 Msa1243860:intron 30.0%
! TGTCTCTATTTTCTATTAGG+TGG + chr8_2:30663781-30663800 Msa1243860:intron 30.0%
AAAGACTACATTGTACAAGA+AGG + chr8_2:30664115-30664134 Msa1243860:CDS 30.0%
TGAAAACTATAACGAGCAAT+TGG - chr8_2:30664250-30664269 None:intergenic 30.0%
! TCTGAAGTTTAACTAGCAAT+TGG - chr8_2:30664367-30664386 None:intergenic 30.0%
ACAAATATCTCTTCCTTACT+TGG + chr8_2:30664479-30664498 Msa1243860:three_prime_UTR 30.0%
CCGAAAAACCTTGATTTCAA+AGG - chr8_2:30657697-30657716 None:intergenic 35.0%
!!! GTTTTGGTTGAACTCCATAA+AGG - chr8_2:30657750-30657769 None:intergenic 35.0%
!! ATTGTTGGTCTTCCTAATGT+TGG + chr8_2:30657817-30657836 Msa1243860:CDS 35.0%
TAAATGTAATCGCATCGTGT+CGG - chr8_2:30657949-30657968 None:intergenic 35.0%
AAAGTGAGGGTAAAAATGAG+AGG - chr8_2:30658480-30658499 None:intergenic 35.0%
AAACGAACAATGGAACTAAC+TGG - chr8_2:30658560-30658579 None:intergenic 35.0%
! TCTGCTACTAGCTTATAACA+AGG + chr8_2:30658647-30658666 Msa1243860:intron 35.0%
ATGGTCCCTGTTTATATGAA+TGG + chr8_2:30658905-30658924 Msa1243860:intron 35.0%
! AAATAGGACGTGTTTTGCTA+AGG + chr8_2:30659056-30659075 Msa1243860:intron 35.0%
! AATAGGACGTGTTTTGCTAA+GGG + chr8_2:30659057-30659076 Msa1243860:intron 35.0%
TAGGAGTTAGAACATCTTTC+TGG - chr8_2:30659219-30659238 None:intergenic 35.0%
AGGCATATGAAGTTATTGCA+AGG - chr8_2:30659608-30659627 None:intergenic 35.0%
!! TGTTTAGGTTGAAAACGGAA+AGG + chr8_2:30659776-30659795 Msa1243860:intron 35.0%
TGTACAATAGAGCCAAATGT+AGG + chr8_2:30659822-30659841 Msa1243860:CDS 35.0%
GTACAATAGAGCCAAATGTA+GGG + chr8_2:30659823-30659842 Msa1243860:CDS 35.0%
!! AGATATTGCTGGTCTTGTAA+AGG + chr8_2:30659932-30659951 Msa1243860:CDS 35.0%
!! GATATTGCTGGTCTTGTAAA+GGG + chr8_2:30659933-30659952 Msa1243860:CDS 35.0%
TTTATCACATATTCGTGAGG+TGG + chr8_2:30660122-30660141 Msa1243860:CDS 35.0%
! TAAGCACTTGTGAGTTTGTT+TGG + chr8_2:30660293-30660312 Msa1243860:intron 35.0%
! AAGCACTTGTGAGTTTGTTT+GGG + chr8_2:30660294-30660313 Msa1243860:intron 35.0%
! AGTTTGTTTGGGAGATCTTA+CGG + chr8_2:30660305-30660324 Msa1243860:intron 35.0%
TGCATATCTACTACTGATCT+AGG - chr8_2:30660488-30660507 None:intergenic 35.0%
GCTTAACAAAACTTGGAGTT+AGG + chr8_2:30660514-30660533 Msa1243860:intron 35.0%
TCAAAACATCGTACAACCTA+AGG - chr8_2:30660617-30660636 None:intergenic 35.0%
ATGACATTATTCACGTGAAC+GGG + chr8_2:30660642-30660661 Msa1243860:CDS 35.0%
GATAACGTCAATATCAGACT+TGG - chr8_2:30660678-30660697 None:intergenic 35.0%
! TTCACTGTGAAGACTACTTT+TGG + chr8_2:30660896-30660915 Msa1243860:intron 35.0%
!! TCACTGTGAAGACTACTTTT+GGG + chr8_2:30660897-30660916 Msa1243860:intron 35.0%
!!! AGACTACTTTTGGGTTTTTG+CGG + chr8_2:30660906-30660925 Msa1243860:intron 35.0%
AATCTGCATTTCTTCAAACG+AGG - chr8_2:30660964-30660983 None:intergenic 35.0%
AATGCAGATTGAGAAAAGAC+TGG + chr8_2:30660974-30660993 Msa1243860:intron 35.0%
ACTAAAAAAGGGCAAGACAA+AGG + chr8_2:30661001-30661020 Msa1243860:intron 35.0%
! GGATTCACAATCTAAAGTCA+AGG + chr8_2:30661022-30661041 Msa1243860:intron 35.0%
CAAATTCAAGAAGCAGTGAT+GGG - chr8_2:30661070-30661089 None:intergenic 35.0%
ACAAATTCAAGAAGCAGTGA+TGG - chr8_2:30661071-30661090 None:intergenic 35.0%
TCACTGCTTCTTGAATTTGT+TGG + chr8_2:30661071-30661090 Msa1243860:intron 35.0%
AAAAATTCGTGTAGCACTCT+TGG + chr8_2:30661164-30661183 Msa1243860:CDS 35.0%
!!! TGTCATTGACGGATTTTGAA+AGG + chr8_2:30661208-30661227 Msa1243860:CDS 35.0%
!!! GTCATTGACGGATTTTGAAA+GGG + chr8_2:30661209-30661228 Msa1243860:CDS 35.0%
AATTGTAACAATTTCAGCGC+AGG + chr8_2:30661371-30661390 Msa1243860:CDS 35.0%
TTATTTGTCTATGCAGGTTG+AGG + chr8_2:30661925-30661944 Msa1243860:intron 35.0%
! GAGCAACATATGATCTTTTG+GGG + chr8_2:30662035-30662054 Msa1243860:CDS 35.0%
!!! CTGCGAACTTATTTTACTTC+CGG + chr8_2:30662058-30662077 Msa1243860:CDS 35.0%
!! TTATTTTACTTCCGGTGAGA+AGG + chr8_2:30662066-30662085 Msa1243860:CDS 35.0%
! ATTTTCTCTTACCTTCTCAC+CGG - chr8_2:30662080-30662099 None:intergenic 35.0%
! TTAACATGGGCTATCTAACA+AGG - chr8_2:30662323-30662342 None:intergenic 35.0%
ACCGTATTCGTGTTTAACAT+GGG - chr8_2:30662336-30662355 None:intergenic 35.0%
TTGGAGTTTCCTTTATCCTT+AGG + chr8_2:30662665-30662684 Msa1243860:intron 35.0%
TTTGTCAACACGAGGAAAAA+AGG - chr8_2:30662709-30662728 None:intergenic 35.0%
!! TTTTTCCTCGTGTTGACAAA+TGG + chr8_2:30662709-30662728 Msa1243860:intron 35.0%
ATTCTGTTTGGTCAATCAGT+CGG - chr8_2:30662798-30662817 None:intergenic 35.0%
! AACAAAGGTGGAAGTGATTT+TGG + chr8_2:30663100-30663119 Msa1243860:intron 35.0%
! GTTCCCTGCAAATATTTTCA+GGG - chr8_2:30663368-30663387 None:intergenic 35.0%
! TGTTCCCTGCAAATATTTTC+AGG - chr8_2:30663369-30663388 None:intergenic 35.0%
! AATGGCCTATACCTTTTTCT+TGG - chr8_2:30663528-30663547 None:intergenic 35.0%
CTACTTAGTTGGTTAAAGCT+TGG + chr8_2:30663631-30663650 Msa1243860:intron 35.0%
TTGTTGCTATATCCTAGAAC+TGG + chr8_2:30663658-30663677 Msa1243860:intron 35.0%
TAGTAAACAAAGCCAGTTCT+AGG - chr8_2:30663673-30663692 None:intergenic 35.0%
AATCATTCTGACTCATGTAC+TGG + chr8_2:30663692-30663711 Msa1243860:intron 35.0%
ATCATTCTGACTCATGTACT+GGG + chr8_2:30663693-30663712 Msa1243860:intron 35.0%
!! AAAGCTAGTCTTGATGGATT+TGG + chr8_2:30663730-30663749 Msa1243860:intron 35.0%
!! AAGCTAGTCTTGATGGATTT+GGG + chr8_2:30663731-30663750 Msa1243860:intron 35.0%
AAAAGGCAGCCTAGTTTATT+GGG - chr8_2:30663887-30663906 None:intergenic 35.0%
AAAAAGGCAGCCTAGTTTAT+TGG - chr8_2:30663888-30663907 None:intergenic 35.0%
TTACAAGTTTGAACCAAGTC+CGG - chr8_2:30664016-30664035 None:intergenic 35.0%
CTTGGTTCAAACTTGTAAAC+AGG + chr8_2:30664018-30664037 Msa1243860:intron 35.0%
! GCTGAAAATTTTCCTGATCT+TGG - chr8_2:30664228-30664247 None:intergenic 35.0%
TTGCTAGTTAAACTTCAGAG+AGG + chr8_2:30664368-30664387 Msa1243860:three_prime_UTR 35.0%
ATAAGCATGAGTCTCAAAGC+TGG + chr8_2:30657793-30657812 Msa1243860:CDS 40.0%
AGTCTCAAAGCTGGTATTGT+TGG + chr8_2:30657802-30657821 Msa1243860:CDS 40.0%
AGGGTAGATTTGCCAACATT+AGG - chr8_2:30657832-30657851 None:intergenic 40.0%
CGGGTCATGTAAACGAAAAA+GGG - chr8_2:30657882-30657901 None:intergenic 40.0%
ACGGGTCATGTAAACGAAAA+AGG - chr8_2:30657883-30657902 None:intergenic 40.0%
TACGCTATAAACTAGCGCTT+TGG - chr8_2:30658124-30658143 None:intergenic 40.0%
! CTGTGATCGAGTCTTTTTGA+TGG + chr8_2:30658693-30658712 Msa1243860:intron 40.0%
ACTACTACTGTTGCCACTAT+TGG - chr8_2:30658783-30658802 None:intergenic 40.0%
! ATAGGACGTGTTTTGCTAAG+GGG + chr8_2:30659058-30659077 Msa1243860:intron 40.0%
! AGAGAAGGCTTTAGTGTGAA+AGG + chr8_2:30659115-30659134 Msa1243860:intron 40.0%
GCTTTAGTGTGAAAGGAGAA+GGG + chr8_2:30659122-30659141 Msa1243860:intron 40.0%
AGAAGATAACCTTGCACACA+AGG - chr8_2:30659161-30659180 None:intergenic 40.0%
CTCTTAGGTAACATCGTGTT+AGG - chr8_2:30659238-30659257 None:intergenic 40.0%
GAAATTGTGTCTTCAAGCAG+TGG - chr8_2:30659282-30659301 None:intergenic 40.0%
! GAAGTTAGCTGCTGATTACT+AGG + chr8_2:30659391-30659410 Msa1243860:intron 40.0%
ACAGCAACAATCCCTACATT+TGG - chr8_2:30659837-30659856 None:intergenic 40.0%
TCGTTGGGATTTACTGAGAT+CGG - chr8_2:30659886-30659905 None:intergenic 40.0%
TCTCAGTAAATCCCAACGAA+TGG + chr8_2:30659887-30659906 Msa1243860:CDS 40.0%
TCTACAAACTCTATGGATGC+TGG - chr8_2:30659915-30659934 None:intergenic 40.0%
AAGCTAATCTGGAGAGCTTA+TGG - chr8_2:30660344-30660363 None:intergenic 40.0%
!! CTACTGATCTAGGCTTTGTT+TGG - chr8_2:30660478-30660497 None:intergenic 40.0%
! TGTTTTCACAGACTTAGACC+AGG + chr8_2:30660709-30660728 Msa1243860:CDS 40.0%
AGTCTTCACAGTGAAGAGAA+AGG - chr8_2:30660891-30660910 None:intergenic 40.0%
! GTTTGAAGCATCAGCTAGAT+CGG - chr8_2:30661301-30661320 None:intergenic 40.0%
! TTTTAGTAACACTTGGGGCT+AGG + chr8_2:30661464-30661483 Msa1243860:intron 40.0%
TTTAGTAACACTTGGGGCTA+GGG + chr8_2:30661465-30661484 Msa1243860:intron 40.0%
CACAGGTCAAATCTAGACAA+TGG - chr8_2:30661584-30661603 None:intergenic 40.0%
ACATCTTACTCGATTCTCTG+TGG - chr8_2:30661903-30661922 None:intergenic 40.0%
!! TCTCTTGGTGTTAGTGAAAG+TGG + chr8_2:30661995-30662014 Msa1243860:CDS 40.0%
GTGTTAGTGAAAGTGGTCTT+GGG + chr8_2:30662002-30662021 Msa1243860:CDS 40.0%
GTGCCAGTGCTTTATAAAAC+AGG - chr8_2:30662140-30662159 None:intergenic 40.0%
TAAGCTATAACCACATGCGT+CGG + chr8_2:30662223-30662242 Msa1243860:intron 40.0%
ACAAGGAGACTTCACATTGA+AGG - chr8_2:30662306-30662325 None:intergenic 40.0%
GCCCATGTTAAACACGAATA+CGG + chr8_2:30662332-30662351 Msa1243860:intron 40.0%
CACCGTATTCGTGTTTAACA+TGG - chr8_2:30662337-30662356 None:intergenic 40.0%
AATGTATCCACAGGAGACAA+AGG + chr8_2:30662507-30662526 Msa1243860:intron 40.0%
GCAAGTAATAGTGCATGACT+TGG + chr8_2:30663021-30663040 Msa1243860:intron 40.0%
TGGTCCCTGAAAATATTTGC+AGG + chr8_2:30663361-30663380 Msa1243860:intron 40.0%
GGTCCCTGAAAATATTTGCA+GGG + chr8_2:30663362-30663381 Msa1243860:intron 40.0%
GTATAGGCCATTGAGAGAAA+TGG + chr8_2:30663536-30663555 Msa1243860:intron 40.0%
TTCGCTTCCATTTCTCTCAA+TGG - chr8_2:30663546-30663565 None:intergenic 40.0%
TTGAGAGAAATGGAAGCGAA+TGG + chr8_2:30663546-30663565 Msa1243860:intron 40.0%
TGTAGCCATGTCTACTTAGT+TGG + chr8_2:30663620-30663639 Msa1243860:intron 40.0%
CATTTCCCTCCCAATAAACT+AGG + chr8_2:30663875-30663894 Msa1243860:intron 40.0%
! TTTTTGCAGTTGCGATCTGA+AGG + chr8_2:30664091-30664110 Msa1243860:intron 40.0%
!! ATTTCCACTGATTCCCATCT+GGG - chr8_2:30664186-30664205 None:intergenic 40.0%
! ACTTACGACGGCATTGAAGA+GGG - chr8_2:30657851-30657870 None:intergenic 45.0%
!! AATCAGAAGTGTCGGTGCTA+CGG - chr8_2:30657902-30657921 None:intergenic 45.0%
GTGTTAGTGTCCACGTGTTT+CGG + chr8_2:30658008-30658027 Msa1243860:intron 45.0%
TACTTAGACACCGAAACACG+TGG - chr8_2:30658021-30658040 None:intergenic 45.0%
! ACGTGTTTTGCTAAGGGGAA+GGG + chr8_2:30659063-30659082 Msa1243860:intron 45.0%
! GGCTTTAGTGTGAAAGGAGA+AGG + chr8_2:30659121-30659140 Msa1243860:intron 45.0%
TGAAAGGAGAAGGGTCTTCT+GGG + chr8_2:30659131-30659150 Msa1243860:intron 45.0%
TGTACTTTGTGGTGAGCTAC+TGG + chr8_2:30659360-30659379 Msa1243860:intron 45.0%
! CTTGTAAAGGGTGCAAGTCA+AGG + chr8_2:30659945-30659964 Msa1243860:CDS 45.0%
CTTCAACTGTTACAGGGACT+CGG + chr8_2:30660090-30660109 Msa1243860:intron 45.0%
AGGTGATAATCATCGACCCA+TGG - chr8_2:30660597-30660616 None:intergenic 45.0%
GGGTCGATGATTATCACCTT+AGG + chr8_2:30660598-30660617 Msa1243860:intron 45.0%
TGACAGTTAGTAAGCTGACC+TGG - chr8_2:30660730-30660749 None:intergenic 45.0%
AATGCGCTGCCACAAACATT+TGG - chr8_2:30660803-30660822 None:intergenic 45.0%
AGAGGCAGAAAAGTCTGCAT+TGG + chr8_2:30661140-30661159 Msa1243860:CDS 45.0%
ATTCGTGTAGCACTCTTGGA+TGG + chr8_2:30661168-30661187 Msa1243860:CDS 45.0%
! TGCACGATCTGTGTCATTGA+CGG + chr8_2:30661197-30661216 Msa1243860:CDS 45.0%
TTAGTAACACTTGGGGCTAG+GGG + chr8_2:30661466-30661485 Msa1243860:intron 45.0%
!! AGTCGAGGTTTTATGCAAGG+AGG - chr8_2:30661553-30661572 None:intergenic 45.0%
!! AGGAGTCGAGGTTTTATGCA+AGG - chr8_2:30661556-30661575 None:intergenic 45.0%
ACAATGGATCAAAGGAGTCG+AGG - chr8_2:30661568-30661587 None:intergenic 45.0%
ATACCAAGATGCAGAGGACT+AGG - chr8_2:30661681-30661700 None:intergenic 45.0%
GGTGTTAGTGAAAGTGGTCT+TGG + chr8_2:30662001-30662020 Msa1243860:CDS 45.0%
ATGTGTCAGATAGCTACACG+TGG + chr8_2:30662265-30662284 Msa1243860:intron 45.0%
! CTTCACATTGAAGGTGTGTC+CGG - chr8_2:30662297-30662316 None:intergenic 45.0%
AAGGCATGGACAATACTTGC+AGG + chr8_2:30662526-30662545 Msa1243860:CDS 45.0%
CAGAACCATTTGTCAACACG+AGG - chr8_2:30662717-30662736 None:intergenic 45.0%
! CTCGTGTTGACAAATGGTTC+TGG + chr8_2:30662715-30662734 Msa1243860:intron 45.0%
TGAATAACTCCAGCAGCTTG+AGG - chr8_2:30662895-30662914 None:intergenic 45.0%
GCAAGTAATAGCGCATGACT+TGG + chr8_2:30663048-30663067 Msa1243860:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr8_2:30663150-30663169 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr8_2:30663151-30663170 None:intergenic 45.0%
TGCAGGGGATGAAGAGTTAT+AGG + chr8_2:30663199-30663218 Msa1243860:intron 45.0%
TGTAGACTTGAAAGTGAGCC+AGG + chr8_2:30663247-30663266 Msa1243860:intron 45.0%
GTAGACTTGAAAGTGAGCCA+GGG + chr8_2:30663248-30663267 Msa1243860:intron 45.0%
TACTGAAAACCAGATTGCCC+TGG - chr8_2:30663268-30663287 None:intergenic 45.0%
CGGTAGAATTTCGTGCTAGT+TGG + chr8_2:30663441-30663460 Msa1243860:intron 45.0%
! CTAGTTGGCTCAGACATATG+TGG + chr8_2:30663456-30663475 Msa1243860:intron 45.0%
TTGGCTCAGACATATGTGGA+AGG + chr8_2:30663460-30663479 Msa1243860:intron 45.0%
CTCAGACATATGTGGAAGGA+GGG + chr8_2:30663464-30663483 Msa1243860:intron 45.0%
TATGACGACTTTGTTGCTGC+TGG + chr8_2:30663806-30663825 Msa1243860:CDS 45.0%
!! TTTGTTGCTGCTGGTTCACT+TGG + chr8_2:30663815-30663834 Msa1243860:CDS 45.0%
!! CATTTCCACTGATTCCCATC+TGG - chr8_2:30664187-30664206 None:intergenic 45.0%
ATTTGAGGATGCTCCAAGCT+AGG + chr8_2:30664295-30664314 Msa1243860:three_prime_UTR 45.0%
!! ATTATTAATGTATAATAAAT+AGG - chr8_2:30662983-30663002 None:intergenic 5.0%
!! TTATATAAATGAAAATAAAA+AGG - chr8_2:30663904-30663923 None:intergenic 5.0%
! GACTTACGACGGCATTGAAG+AGG - chr8_2:30657852-30657871 None:intergenic 50.0%
AGGGAGAGAGTGACTTACGA+CGG - chr8_2:30657863-30657882 None:intergenic 50.0%
!! ATCAGAAGTGTCGGTGCTAC+GGG - chr8_2:30657901-30657920 None:intergenic 50.0%
TGGCGAATTGGCGATGTGTT+AGG + chr8_2:30658925-30658944 Msa1243860:intron 50.0%
! GACGTGTTTTGCTAAGGGGA+AGG + chr8_2:30659062-30659081 Msa1243860:intron 50.0%
! TGTTTTGCTAAGGGGAAGGG+AGG + chr8_2:30659066-30659085 Msa1243860:intron 50.0%
GTGAAAGGAGAAGGGTCTTC+TGG + chr8_2:30659130-30659149 Msa1243860:intron 50.0%
GAAAGGAGAAGGGTCTTCTG+GGG + chr8_2:30659132-30659151 Msa1243860:intron 50.0%
AGCACTTGGAGACGAGAATC+TGG - chr8_2:30659861-30659880 None:intergenic 50.0%
!! TACTGAGATCGGAGAGCACT+TGG - chr8_2:30659875-30659894 None:intergenic 50.0%
GGATGCTGGAACCATTCGTT+GGG - chr8_2:30659901-30659920 None:intergenic 50.0%
TGGATGCTGGAACCATTCGT+TGG - chr8_2:30659902-30659921 None:intergenic 50.0%
! TGAGGTGGACTCCATACTTC+AGG + chr8_2:30660137-30660156 Msa1243860:CDS 50.0%
GTCAATGACACAGATCGTGC+AGG - chr8_2:30661198-30661217 None:intergenic 50.0%
GTTGCATCTGAGTTGCAGTC+TGG + chr8_2:30661348-30661367 Msa1243860:CDS 50.0%
CTTCCTAGTCCTCTGCATCT+TGG + chr8_2:30661675-30661694 Msa1243860:intron 50.0%
GCTTTCTGAACTAGCGCTTG+AGG + chr8_2:30661952-30661971 Msa1243860:CDS 50.0%
TGTCAGATAGCTACACGTGG+TGG + chr8_2:30662268-30662287 Msa1243860:intron 50.0%
ATCCACAGGAGACAAAGGCA+TGG + chr8_2:30662512-30662531 Msa1243860:intron 50.0%
TGATGCTTACCGTCTCTGCT+CGG - chr8_2:30662942-30662961 None:intergenic 50.0%
AGCAGAGACGGTAAGCATCA+TGG + chr8_2:30662942-30662961 Msa1243860:intron 50.0%
AATAGCCGACCCCACTTAGT+GGG + chr8_2:30663138-30663157 Msa1243860:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_2:30663146-30663165 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr8_2:30663152-30663171 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr8_2:30663149-30663168 Msa1243860:intron 50.0%
CTTAGTGGGATAAGGCTTGG+TGG + chr8_2:30663152-30663171 Msa1243860:intron 50.0%
GCTCAGACATATGTGGAAGG+AGG + chr8_2:30663463-30663482 Msa1243860:intron 50.0%
! CTTGGTGCAGCACGAGAAAA+AGG + chr8_2:30663833-30663852 Msa1243860:CDS 50.0%
GGCAGCCTAGTTTATTGGGA+GGG - chr8_2:30663883-30663902 None:intergenic 50.0%
AGGCAGCCTAGTTTATTGGG+AGG - chr8_2:30663884-30663903 None:intergenic 50.0%
AGTTTGAACCAAGTCCGGCA+GGG - chr8_2:30664011-30664030 None:intergenic 50.0%
AAGTTTGAACCAAGTCCGGC+AGG - chr8_2:30664012-30664031 None:intergenic 50.0%
TCGAACTTACCACTCCCAGA+TGG + chr8_2:30664169-30664188 Msa1243860:three_prime_UTR 50.0%
CGAACTTACCACTCCCAGAT+GGG + chr8_2:30664170-30664189 Msa1243860:three_prime_UTR 50.0%
!! CAATCCATCGACTCCTAGCT+TGG - chr8_2:30664311-30664330 None:intergenic 50.0%
CTGGGGTAACCTTGTGTGCA+AGG + chr8_2:30659149-30659168 Msa1243860:intron 55.0%
! AAAGGGTGCAAGTCAAGGCG+AGG + chr8_2:30659950-30659969 Msa1243860:CDS 55.0%
GGCGCCAGCCACATGTAATA+GGG - chr8_2:30661509-30661528 None:intergenic 55.0%
TGACACAACACCGACGCATG+TGG - chr8_2:30662236-30662255 None:intergenic 55.0%
!! TAGCTACACGTGGTGGACAC+CGG + chr8_2:30662275-30662294 Msa1243860:intron 55.0%
GTCCATGCCTTTGTCTCCTG+TGG - chr8_2:30662517-30662536 None:intergenic 55.0%
ATGACTGCACCTCAAGCTGC+TGG + chr8_2:30662883-30662902 Msa1243860:CDS 55.0%
GGGTTTCATCCGAGCAGAGA+CGG + chr8_2:30662930-30662949 Msa1243860:CDS 55.0%
GAATAGCCGACCCCACTTAG+TGG + chr8_2:30663137-30663156 Msa1243860:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_2:30663144-30663163 Msa1243860:intron 55.0%
!! AGTGGGATAAGGCTTGGTGG+TGG + chr8_2:30663155-30663174 Msa1243860:intron 55.0%
GAAAGTGAGCCAGGGCAATC+TGG + chr8_2:30663256-30663275 Msa1243860:intron 55.0%
GTTTGAACCAAGTCCGGCAG+GGG - chr8_2:30664010-30664029 None:intergenic 55.0%
!! CACTGATTCCCATCTGGGAG+TGG - chr8_2:30664181-30664200 None:intergenic 55.0%
CACTCCCAGATGGGAATCAG+TGG + chr8_2:30664179-30664198 Msa1243860:three_prime_UTR 55.0%
TGCTCCAAGCTAGGAGTCGA+TGG + chr8_2:30664304-30664323 Msa1243860:three_prime_UTR 55.0%
GGGCGCCAGCCACATGTAAT+AGG - chr8_2:30661510-30661529 None:intergenic 60.0%
ACCATTTCCCTGTCCCCTGC+CGG + chr8_2:30663994-30664013 Msa1243860:intron 60.0%
TACATGTGGCTGGCGCCCTC+TGG + chr8_2:30661512-30661531 Msa1243860:intron 65.0%
GGCAGGGGACAGGGAAATGG+TGG - chr8_2:30663995-30664014 None:intergenic 65.0%
TCCGGCAGGGGACAGGGAAA+TGG - chr8_2:30663998-30664017 None:intergenic 65.0%
ACCAAGTCCGGCAGGGGACA+GGG - chr8_2:30664004-30664023 None:intergenic 65.0%
AACCAAGTCCGGCAGGGGAC+AGG - chr8_2:30664005-30664024 None:intergenic 65.0%
TCCCTGTCCCCTGCCGGACT+TGG + chr8_2:30664000-30664019 Msa1243860:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 30657506 30664507 30657506 ID=Msa1243860;Name=Msa1243860
chr8_2 mRNA 30657506 30664507 30657506 ID=Msa1243860-mRNA-1;Parent=Msa1243860;Name=Msa1243860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=155|0.88|1|1|1|1|10|339|395
chr8_2 exon 30657506 30657864 30657506 ID=Msa1243860-mRNA-1:exon:10248;Parent=Msa1243860-mRNA-1
chr8_2 exon 30659783 30659971 30659783 ID=Msa1243860-mRNA-1:exon:10249;Parent=Msa1243860-mRNA-1
chr8_2 exon 30660105 30660158 30660105 ID=Msa1243860-mRNA-1:exon:10250;Parent=Msa1243860-mRNA-1
chr8_2 exon 30660620 30660730 30660620 ID=Msa1243860-mRNA-1:exon:10251;Parent=Msa1243860-mRNA-1
chr8_2 exon 30661138 30661392 30661138 ID=Msa1243860-mRNA-1:exon:10252;Parent=Msa1243860-mRNA-1
chr8_2 exon 30661941 30662087 30661941 ID=Msa1243860-mRNA-1:exon:10253;Parent=Msa1243860-mRNA-1
chr8_2 exon 30662520 30662547 30662520 ID=Msa1243860-mRNA-1:exon:10254;Parent=Msa1243860-mRNA-1
chr8_2 exon 30662881 30662951 30662881 ID=Msa1243860-mRNA-1:exon:10255;Parent=Msa1243860-mRNA-1
chr8_2 exon 30663800 30663859 30663800 ID=Msa1243860-mRNA-1:exon:10256;Parent=Msa1243860-mRNA-1
chr8_2 exon 30664100 30664507 30664100 ID=Msa1243860-mRNA-1:exon:10257;Parent=Msa1243860-mRNA-1
chr8_2 five_prime_UTR 30657506 30657660 30657506 ID=Msa1243860-mRNA-1:five_prime_utr;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30657661 30657864 30657661 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30659783 30659971 30659783 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30660105 30660158 30660105 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30660620 30660730 30660620 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30661138 30661392 30661138 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30661941 30662087 30661941 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30662520 30662547 30662520 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30662881 30662951 30662881 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30663800 30663859 30663800 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 CDS 30664100 30664168 30664100 ID=Msa1243860-mRNA-1:cds;Parent=Msa1243860-mRNA-1
chr8_2 three_prime_UTR 30664169 30664507 30664169 ID=Msa1243860-mRNA-1:three_prime_utr;Parent=Msa1243860-mRNA-1
Gene Sequence

>Msa1243860

ATGGCAACAAAACTAGTACCCAGTTTAGTTCATCCTTTGAAATCAAGGTTTTTCGGTAATTCTCTTTTAACCAAACAATCTTTTCACCTTTATGGAGTTCAACCAAAACTTTCATATTCTTCTTCTTCTAAGATAAGCATGAGTCTCAAAGCTGGTATTGTTGGTCTTCCTAATGTTGGCAAATCTACCCTCTTCAATGCCGTCGTTGAAAACGGAAAGGCTCAAGCTGCCAATTTCCCTTTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTCCAAGTGCTCTCCGATCTCAGTAAATCCCAACGAATGGTTCCAGCATCCATAGAGTTTGTAGATATTGCTGGTCTTGTAAAGGGTGCAAGTCAAGGCGAGGGACTCGGCAATAAGTTTTTATCACATATTCGTGAGGTGGACTCCATACTTCAGGTTGTACGATGTTTTGATGATAATGACATTATTCACGTGAACGGGAAAGTTGATCCCAAGTCTGATATTGACGTTATCAACTTGGAGCTTGTTTTCACAGACTTAGACCAGGAAGAGGCAGAAAAGTCTGCATTGGAAAAAATTCGTGTAGCACTCTTGGATGGAAAACCTGCACGATCTGTGTCATTGACGGATTTTGAAAGGGAATCTGTAAAACGACTTTGCTTGCTCACCATGAAACCCATTATATATGTGGCAAATGTTGCGGAGTCCGATCTAGCTGATGCTTCAAACAATGATTACGTTACGGGTGTCAAGAATGTTGCATCTGAGTTGCAGTCTGGAATTGTAACAATTTCAGCGCAGGTTGAGGCAGAGCTTTCTGAACTAGCGCTTGAGGAAAGACAAGAATATTTGAAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGGAACCTAATTAGAGCAACATATGATCTTTTGGGGCTGCGAACTTATTTTACTTCCGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCATTCTGACTTTGAGAAGGGTTTCATCCGAGCAGAGACGGTGGCTTATGACGACTTTGTTGCTGCTGGTTCACTTGGTGCAGCACGAGAAAAAGGACTCTTGCGATCTGAAGGTAAAGACTACATTGTACAAGAAGGAGACGTAATGTTGTTTCGATTCAATGTATAA

Protein sequence

>Msa1243860

MATKLVPSLVHPLKSRFFGNSLLTKQSFHLYGVQPKLSYSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSDLSKSQRMVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDPKSDIDVINLELVFTDLDQEEAEKSALEKIRVALLDGKPARSVSLTDFERESVKRLCLLTMKPIIYVANVAESDLADASNNDYVTGVKNVASELQSGIVTISAQVEAELSELALEERQEYLKSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLGAAREKGLLRSEGKDYIVQEGDVMLFRFNV*