AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206440 MtrunA17_Chr4g0055541 96.512 258 5 1 1 254 1 258 0.0 504
Msa1206440 MtrunA17_Chr4g0055531 76.923 78 7 3 176 253 1 67 5.41e-31 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206440 AT4G17600.1 56.226 265 92 6 9 253 1 261 3.10e-94 278
Msa1206440 AT5G47110.1 54.231 260 98 3 5 250 1 253 3.20e-92 273

Find 81 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTAAGTGAATGTGAAAT+TGG 0.145280 8_1:-63472406 Msa1206440:three_prime_UTR
TTGTCATTGCTGGATGATTC+TGG 0.199235 8_1:+63473043 None:intergenic
CTGTTAGTAAACTCCTTTCT+AGG 0.242211 8_1:+63472287 None:intergenic
CCTGAAGCTGAACTACTTAA+TGG 0.270926 8_1:-63472959 Msa1206440:intron
CTTGGGATTTGATGCAGTTT+AGG 0.275261 8_1:-63474914 Msa1206440:CDS
AGGATTCTTTATGACATATC+TGG 0.306621 8_1:-63472815 Msa1206440:CDS
CTAGATGGGTTGCTGGGACT+TGG 0.308595 8_1:-63474932 Msa1206440:CDS
CAGAGGCAAGAAGAAGAAAA+TGG 0.311661 8_1:-63473078 Msa1206440:CDS
GTTGTTGCTGTGATGGGGTT+TGG 0.321435 8_1:+63475151 None:intergenic
TCCTGTTGCTGAGGAGGTTA+AGG 0.324053 8_1:-63474976 Msa1206440:CDS
AATATCTCTGTTGGGACAAA+TGG 0.327366 8_1:-63475014 Msa1206440:CDS
AACAACTATGTCTATGTCTA+TGG 0.327759 8_1:-63475222 Msa1206440:CDS
CCATTAAGTAGTTCAGCTTC+AGG 0.328770 8_1:+63472959 None:intergenic
TGCAAAAGAAGTTGTTCATT+TGG 0.330402 8_1:+63472761 None:intergenic
GTGGATCCTAGATGGGTTGC+TGG 0.337107 8_1:-63474939 Msa1206440:CDS
TAGATGGGTTGCTGGGACTT+GGG 0.360135 8_1:-63474931 Msa1206440:CDS
GCAGGTCGTGCCGCAATGAT+AGG 0.391276 8_1:-63472835 Msa1206440:intron
CACTACAGGATTGTCATTGC+TGG 0.391810 8_1:+63473033 None:intergenic
TCTATCTCATCCTTTGAGAA+TGG 0.407619 8_1:+63475372 None:intergenic
ACCTTAACCTCCTCAGCAAC+AGG 0.409183 8_1:+63474975 None:intergenic
AAAGGAGAGAGGGAGAATAA+AGG 0.426062 8_1:+63475095 None:intergenic
TGTCATTGCTGGATGATTCT+GGG 0.426373 8_1:+63473044 None:intergenic
CACCTCCATTGTACCTTGGT+GGG 0.440364 8_1:-63473005 Msa1206440:CDS
CCATTGTACCTTGGTGGGCA+TGG 0.442929 8_1:-63473000 Msa1206440:CDS
ACACCTCCATTGTACCTTGG+TGG 0.444291 8_1:-63473006 Msa1206440:CDS
GAGATAGAAGTGAGAGAGAG+AGG 0.445148 8_1:-63475357 Msa1206440:five_prime_UTR
AAAGAGGTTGTTGCTGTGAT+GGG 0.448159 8_1:+63475145 None:intergenic
TCTTAAGTGAATGTGAAATT+GGG 0.450263 8_1:-63472405 Msa1206440:three_prime_UTR
CTTGGTGGGCATGGATCAAA+AGG 0.454670 8_1:-63472991 Msa1206440:CDS
CTATCTCATCCTTTGAGAAT+GGG 0.455940 8_1:+63475373 None:intergenic
TCTCCTTTGAGAGCTTCAGC+TGG 0.464697 8_1:-63475080 Msa1206440:CDS
CAAGTCCCAGCAACCCATCT+AGG 0.465863 8_1:+63474933 None:intergenic
GTCTGAGAGTGAGAGTAAAG+AGG 0.470984 8_1:+63475129 None:intergenic
TGCTGTTCCTGTTGCTGAGG+AGG 0.473204 8_1:-63474982 Msa1206440:CDS
GTAGTTCAGCTTCAGGGAGA+TGG 0.482198 8_1:+63472966 None:intergenic
TGGGATGCTGTTATTGATGC+TGG 0.487504 8_1:-63474873 Msa1206440:intron
TATCTGGTCGATAGCTTGAC+AGG 0.493166 8_1:-63472799 Msa1206440:CDS
ACAAGCAATGGCAAGCAACT+TGG 0.494549 8_1:-63472639 Msa1206440:CDS
GTCCCAACAGAGATATTCTC+AGG 0.497364 8_1:+63475020 None:intergenic
CTGAAGCTCTCAAAGGAGAG+AGG 0.497577 8_1:+63475084 None:intergenic
ATATCTCTGTTGGGACAAAT+GGG 0.501225 8_1:-63475013 Msa1206440:CDS
CATTAAGTAGTTCAGCTTCA+GGG 0.512069 8_1:+63472960 None:intergenic
CACCTGAGAATATCTCTGTT+GGG 0.512810 8_1:-63475022 Msa1206440:CDS
AACTCTTCTCTTCGTAGCAG+TGG 0.516899 8_1:-63472737 Msa1206440:CDS
GTGGTTGAGATTCTAGTAAG+AGG 0.522550 8_1:+63475188 None:intergenic
TGGATCCTAGATGGGTTGCT+GGG 0.524372 8_1:-63474938 Msa1206440:CDS
CCACCTGAGAATATCTCTGT+TGG 0.527412 8_1:-63475023 Msa1206440:CDS
TAAAGAGGTTGTTGCTGTGA+TGG 0.527773 8_1:+63475144 None:intergenic
TGAAGCTCTCAAAGGAGAGA+GGG 0.529054 8_1:+63475085 None:intergenic
ACTCTTCTCTTCGTAGCAGT+GGG 0.529406 8_1:-63472736 Msa1206440:CDS
GAGGAGGTTAAGGTTTCTAG+TGG 0.532829 8_1:-63474966 Msa1206440:CDS
CATAGACATAGTTGTTGACA+TGG 0.536011 8_1:+63475229 None:intergenic
CGAGTGAAGTAATCCTAGAA+AGG 0.537463 8_1:-63472300 Msa1206440:three_prime_UTR
TTGACACCTCCATTGTACCT+TGG 0.538618 8_1:-63473009 Msa1206440:CDS
TTCTGCTGTTCCTGTTGCTG+AGG 0.541706 8_1:-63474985 Msa1206440:CDS
GCACTAGCAAGATTATAATA+CGG 0.556628 8_1:+63472524 None:intergenic
GAGAGAGGGAGAATAAAGGA+AGG 0.556971 8_1:+63475099 None:intergenic
GCAATGGCAAGCAACTTGGC+AGG 0.558161 8_1:-63472635 Msa1206440:CDS
GTTCCAGCTGAAGCTCTCAA+AGG 0.564912 8_1:+63475077 None:intergenic
ATGGAGGTGTCAAACACTAC+AGG 0.565063 8_1:+63473019 None:intergenic
ACAGAGATATTCTCAGGTGG+TGG 0.567214 8_1:+63475026 None:intergenic
CCATGCCCACCAAGGTACAA+TGG 0.590303 8_1:+63473000 None:intergenic
AAGAGGTTGTTGCTGTGATG+GGG 0.604087 8_1:+63475146 None:intergenic
ACTTCTCATCAGGAAGAATG+AGG 0.608234 8_1:-63472707 Msa1206440:CDS
ATTAAGAGACAAAATGCGGT+AGG 0.608595 8_1:+63472555 None:intergenic
TCTTCTCTTCGTAGCAGTGG+GGG 0.615034 8_1:-63472734 Msa1206440:CDS
GTACTTGTGCCCATTCTCAA+AGG 0.615059 8_1:-63475382 Msa1206440:five_prime_UTR
CTTCTCTTCGTAGCAGTGGG+GGG 0.622227 8_1:-63472733 Msa1206440:CDS
CTCTTCTCTTCGTAGCAGTG+GGG 0.624987 8_1:-63472735 Msa1206440:CDS
CATAAAGAATCCTATCATTG+CGG 0.653449 8_1:+63472825 None:intergenic
GTGAAGTGAACTAGTGAGGT+GGG 0.653474 8_1:+63475419 None:intergenic
GTCGATAGCTTGACAGGAGT+AGG 0.654568 8_1:-63472793 Msa1206440:CDS
TTTGGAGAGTGAAGAATGAG+TGG 0.655905 8_1:+63475169 None:intergenic
AATAACAGCATCCCAATCAG+TGG 0.659865 8_1:+63474881 None:intergenic
ATGATGTTAGTATAAGTGTG+TGG 0.677703 8_1:+63475268 None:intergenic
ACAAGTACAACAACACAATG+AGG 0.689410 8_1:+63475397 None:intergenic
CCAACAGAGATATTCTCAGG+TGG 0.707278 8_1:+63475023 None:intergenic
TGCCCACCAAGGTACAATGG+AGG 0.708718 8_1:+63473003 None:intergenic
GGTGAAGTGAACTAGTGAGG+TGG 0.717626 8_1:+63475418 None:intergenic
TGAGGTGAAGTGAACTAGTG+AGG 0.734267 8_1:+63475415 None:intergenic
CTATATTAAGAGACAAAATG+CGG 0.743314 8_1:+63472551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAATTATTTAATTAGAA+GGG + chr8_1:63474411-63474430 None:intergenic 10.0%
!!! AAATTTAGAATAACTAAATC+AGG + chr8_1:63473132-63473151 None:intergenic 15.0%
!!! ATTTAGTGATTAATTTGTTA+AGG + chr8_1:63473256-63473275 None:intergenic 15.0%
!! CTTACAATTATTTAATTAGA+AGG + chr8_1:63474412-63474431 None:intergenic 15.0%
!! AGAAATAGAAATAAAATTTG+AGG + chr8_1:63474541-63474560 None:intergenic 15.0%
!!! TATTTCTATTTCTATATACT+AGG - chr8_1:63474548-63474567 Msa1206440:intron 15.0%
!!! TGATACTTTTAAGAAATTAT+TGG - chr8_1:63475023-63475042 Msa1206440:CDS 15.0%
!! AAACAATGAACTTAAAGAAA+AGG + chr8_1:63472867-63472886 None:intergenic 20.0%
!! TATGTTAACTGAATAATAAG+TGG - chr8_1:63473019-63473038 Msa1206440:CDS 20.0%
!! CTACTAATCATATTGATATA+GGG - chr8_1:63474465-63474484 Msa1206440:intron 20.0%
!!! TACTTTTAAGAAATTATTGG+AGG - chr8_1:63475026-63475045 Msa1206440:CDS 20.0%
! ACTTAAAGAAAAGGTAGAAA+AGG + chr8_1:63472858-63472877 None:intergenic 25.0%
!!! CTTTAAGTTCATTGTTTTGT+AGG - chr8_1:63472870-63472889 Msa1206440:intron 25.0%
! TTAAACTCTATAGTAGGAAA+TGG + chr8_1:63472979-63472998 None:intergenic 25.0%
! AGGAAATTAAACTCTATAGT+AGG + chr8_1:63472985-63473004 None:intergenic 25.0%
! AACATAAATCATCAATCAAG+AGG + chr8_1:63473005-63473024 None:intergenic 25.0%
!!! GATTAATTTGTTAAGGCAAT+GGG + chr8_1:63473249-63473268 None:intergenic 25.0%
!!! TGATTAATTTGTTAAGGCAA+TGG + chr8_1:63473250-63473269 None:intergenic 25.0%
!! TCTGTTAATAAAAAAAGCAC+AGG - chr8_1:63474034-63474053 Msa1206440:intron 25.0%
!! CTGTTAATAAAAAAAGCACA+GGG - chr8_1:63474035-63474054 Msa1206440:intron 25.0%
!! TGTTAATAAAAAAAGCACAG+GGG - chr8_1:63474036-63474055 Msa1206440:intron 25.0%
!! AGTAGAAAGTTAAAGAGTAT+AGG + chr8_1:63474153-63474172 None:intergenic 25.0%
! AAAATGCAGAAGAAACAAAT+TGG + chr8_1:63474181-63474200 None:intergenic 25.0%
!!! AATTTGTTTCTTCTGCATTT+TGG - chr8_1:63474180-63474199 Msa1206440:intron 25.0%
! TAGACGGTAATTGTATAATA+GGG - chr8_1:63474349-63474368 Msa1206440:intron 25.0%
!! ATCCTCTTTTTATGATCAAA+AGG - chr8_1:63474433-63474452 Msa1206440:intron 25.0%
!! TCCTCTTTTTATGATCAAAA+GGG - chr8_1:63474434-63474453 Msa1206440:intron 25.0%
! ATCAATATGATTAGTAGCAA+TGG + chr8_1:63474462-63474481 None:intergenic 25.0%
! GCTACTAATCATATTGATAT+AGG - chr8_1:63474464-63474483 Msa1206440:intron 25.0%
!! AATGTACTCATTTTCTGATT+TGG - chr8_1:63474589-63474608 Msa1206440:intron 25.0%
! AAAATGAAACGAGAAAGTAA+AGG - chr8_1:63474787-63474806 Msa1206440:intron 25.0%
! CTATATTAAGAGACAAAATG+CGG + chr8_1:63475155-63475174 None:intergenic 25.0%
! TTCTTAAGTGAATGTGAAAT+TGG - chr8_1:63475297-63475316 Msa1206440:five_prime_UTR 25.0%
! TCTTAAGTGAATGTGAAATT+GGG - chr8_1:63475298-63475317 Msa1206440:five_prime_UTR 25.0%
ATGATGTTAGTATAAGTGTG+TGG + chr8_1:63472438-63472457 None:intergenic 30.0%
AACAACTATGTCTATGTCTA+TGG - chr8_1:63472481-63472500 Msa1206440:three_prime_UTR 30.0%
!!! GAGAATAAAGGAAGGTTTTT+TGG + chr8_1:63472599-63472618 None:intergenic 30.0%
TTGATGCAGTTTAGGAAAAA+TGG - chr8_1:63472797-63472816 Msa1206440:CDS 30.0%
TGAAATTCGTTTACTTCCAT+AGG + chr8_1:63473066-63473085 None:intergenic 30.0%
!!! GAAGAAATCTGTGTTTTTTG+TGG - chr8_1:63473104-63473123 Msa1206440:intron 30.0%
AAGGATTATGTAGGAGATTT+AGG - chr8_1:63473199-63473218 Msa1206440:intron 30.0%
ACTAAATATTACCCACATAG+TGG - chr8_1:63473269-63473288 Msa1206440:intron 30.0%
CTAAATATTACCCACATAGT+GGG - chr8_1:63473270-63473289 Msa1206440:intron 30.0%
! TAGTGTATTTAGTTTACTGC+TGG - chr8_1:63473399-63473418 Msa1206440:intron 30.0%
! TAGTGTATTTAGTTTACTGC+TGG - chr8_1:63473399-63473418 Msa1206440:intron 30.0%
! TAGTGTATTTAGTTTACTGC+TGG - chr8_1:63473399-63473418 Msa1206440:intron 30.0%
TTTATCTTAACAGCTGCTAA+AGG + chr8_1:63473999-63474018 None:intergenic 30.0%
! TTAAAGAGTATAGGAAGACT+AGG + chr8_1:63474144-63474163 None:intergenic 30.0%
GTAGACGGTAATTGTATAAT+AGG - chr8_1:63474348-63474367 Msa1206440:intron 30.0%
ATTAGAAGGGTAAAGATCAA+AGG + chr8_1:63474398-63474417 None:intergenic 30.0%
! CCTCTTTTTATGATCAAAAG+GGG - chr8_1:63474435-63474454 Msa1206440:intron 30.0%
! CTCTTTTTATGATCAAAAGG+GGG - chr8_1:63474436-63474455 Msa1206440:intron 30.0%
!!! AAAGGTTGTTTTTCGATAAG+AGG - chr8_1:63474805-63474824 Msa1206440:intron 30.0%
!!! AAGGTTGTTTTTCGATAAGA+GGG - chr8_1:63474806-63474825 Msa1206440:intron 30.0%
ACTTTGTTAACCTTTCTTCT+TGG - chr8_1:63474838-63474857 Msa1206440:intron 30.0%
CTTTGTTAACCTTTCTTCTT+GGG - chr8_1:63474839-63474858 Msa1206440:intron 30.0%
CATAAAGAATCCTATCATTG+CGG + chr8_1:63474881-63474900 None:intergenic 30.0%
AGGATTCTTTATGACATATC+TGG - chr8_1:63474888-63474907 Msa1206440:CDS 30.0%
TGCAAAAGAAGTTGTTCATT+TGG + chr8_1:63474945-63474964 None:intergenic 30.0%
! CTACATTTTATGACAAGCAA+TGG - chr8_1:63475052-63475071 Msa1206440:CDS 30.0%
CACTTCCAAAAAAGATTAGT+GGG - chr8_1:63475104-63475123 Msa1206440:CDS 30.0%
!!! ACAATCCCACTAATCTTTTT+TGG + chr8_1:63475112-63475131 None:intergenic 30.0%
GCACTAGCAAGATTATAATA+CGG + chr8_1:63475182-63475201 None:intergenic 30.0%
! TTTTTGTATGTTCGCAATGT+AGG - chr8_1:63475270-63475289 Msa1206440:five_prime_UTR 30.0%
ACAAGTACAACAACACAATG+AGG + chr8_1:63472309-63472328 None:intergenic 35.0%
! CTATCTCATCCTTTGAGAAT+GGG + chr8_1:63472333-63472352 None:intergenic 35.0%
! TCTATCTCATCCTTTGAGAA+TGG + chr8_1:63472334-63472353 None:intergenic 35.0%
CATAGACATAGTTGTTGACA+TGG + chr8_1:63472477-63472496 None:intergenic 35.0%
AATATCTCTGTTGGGACAAA+TGG - chr8_1:63472689-63472708 Msa1206440:CDS 35.0%
ATATCTCTGTTGGGACAAAT+GGG - chr8_1:63472690-63472709 Msa1206440:CDS 35.0%
!!! TAAGGTTTCTAGTGGTTTTG+TGG - chr8_1:63472745-63472764 Msa1206440:CDS 35.0%
! GAAAAATGGTACCACTGATT+GGG - chr8_1:63472811-63472830 Msa1206440:CDS 35.0%
CTGAATAATAAGTGGTACTG+TGG - chr8_1:63473027-63473046 Msa1206440:CDS 35.0%
ACCACTAGACTAATTCTTCA+GGG + chr8_1:63473160-63473179 None:intergenic 35.0%
! AAGAATTAGTCTAGTGGTCT+GGG - chr8_1:63473162-63473181 Msa1206440:intron 35.0%
! ACTCTGAAGAAGGATTATGT+AGG - chr8_1:63473190-63473209 Msa1206440:intron 35.0%
AATAACCATTGATGAGTCCA+AGG + chr8_1:63473344-63473363 None:intergenic 35.0%
TCAATGGTTATTCCTTCTTC+TGG - chr8_1:63473352-63473371 Msa1206440:intron 35.0%
CAATGGTTATTCCTTCTTCT+GGG - chr8_1:63473353-63473372 Msa1206440:intron 35.0%
TCAAAAAGCAGTGTGTTTCA+TGG + chr8_1:63473509-63473528 None:intergenic 35.0%
AATAACCATTGATGAGTCCA+AGG + chr8_1:63473344-63473363 None:intergenic 35.0%
TCAATGGTTATTCCTTCTTC+TGG - chr8_1:63473352-63473371 Msa1206440:intron 35.0%
CAATGGTTATTCCTTCTTCT+GGG - chr8_1:63473353-63473372 Msa1206440:intron 35.0%
TCAAAAAGCAGTGTGTTTCA+TGG + chr8_1:63473509-63473528 None:intergenic 35.0%
AATAACCATTGATGAGTCCA+AGG + chr8_1:63473344-63473363 None:intergenic 35.0%
TCAATGGTTATTCCTTCTTC+TGG - chr8_1:63473352-63473371 Msa1206440:intron 35.0%
CAATGGTTATTCCTTCTTCT+GGG - chr8_1:63473353-63473372 Msa1206440:intron 35.0%
TCAAAAAGCAGTGTGTTTCA+TGG + chr8_1:63473509-63473528 None:intergenic 35.0%
!!! TGCTTTTTGAGTTGAAGAAG+AGG - chr8_1:63473927-63473946 Msa1206440:intron 35.0%
!! AAAGATCTGGTTTGTTGAGT+GGG - chr8_1:63473952-63473971 Msa1206440:intron 35.0%
! CTCTTGATTTTTGCAAAGCA+GGG + chr8_1:63474074-63474093 None:intergenic 35.0%
!! TGGTTTTACATGGAAAGACA+TGG - chr8_1:63474208-63474227 Msa1206440:intron 35.0%
TCTACATCAGTTTCATGCTT+TGG + chr8_1:63474254-63474273 None:intergenic 35.0%
ATGTAGACTTAGAGTCAGTT+TGG - chr8_1:63474267-63474286 Msa1206440:intron 35.0%
TGTAGACTTAGAGTCAGTTT+GGG - chr8_1:63474268-63474287 Msa1206440:intron 35.0%
AGTCAGTTTGGGTAAACTTA+TGG - chr8_1:63474279-63474298 Msa1206440:intron 35.0%
! CCCCTTTTGATCATAAAAAG+AGG + chr8_1:63474438-63474457 None:intergenic 35.0%
! TCTCTTTTACAGTTGGCATA+AGG - chr8_1:63474492-63474511 Msa1206440:intron 35.0%
! TTCTTCTTGCCTCTGAAAAT+GGG + chr8_1:63474620-63474639 None:intergenic 35.0%
CATTAAGTAGTTCAGCTTCA+GGG + chr8_1:63474746-63474765 None:intergenic 35.0%
GCACTTCCAAAAAAGATTAG+TGG - chr8_1:63475103-63475122 Msa1206440:CDS 35.0%
ATTAAGAGACAAAATGCGGT+AGG + chr8_1:63475151-63475170 None:intergenic 35.0%
CTGTTAGTAAACTCCTTTCT+AGG + chr8_1:63475419-63475438 None:intergenic 35.0%
GTGGTTGAGATTCTAGTAAG+AGG + chr8_1:63472518-63472537 None:intergenic 40.0%
TTTGGAGAGTGAAGAATGAG+TGG + chr8_1:63472537-63472556 None:intergenic 40.0%
AAAGAGGTTGTTGCTGTGAT+GGG + chr8_1:63472561-63472580 None:intergenic 40.0%
TAAAGAGGTTGTTGCTGTGA+TGG + chr8_1:63472562-63472581 None:intergenic 40.0%
AAAGGAGAGAGGGAGAATAA+AGG + chr8_1:63472611-63472630 None:intergenic 40.0%
CACCTGAGAATATCTCTGTT+GGG - chr8_1:63472681-63472700 Msa1206440:CDS 40.0%
!!! TGGTTTTGTGGATCCTAGAT+GGG - chr8_1:63472757-63472776 Msa1206440:CDS 40.0%
CTTGGGATTTGATGCAGTTT+AGG - chr8_1:63472789-63472808 Msa1206440:CDS 40.0%
GGAAAAATGGTACCACTGAT+TGG - chr8_1:63472810-63472829 Msa1206440:CDS 40.0%
AATAACAGCATCCCAATCAG+TGG + chr8_1:63472825-63472844 None:intergenic 40.0%
TAAGTGGTACTGTGGTAGTA+AGG - chr8_1:63473035-63473054 Msa1206440:CDS 40.0%
TGGTAGTAAGGTTTCACCTA+TGG - chr8_1:63473047-63473066 Msa1206440:CDS 40.0%
! TCCCTGAAGAATTAGTCTAG+TGG - chr8_1:63473156-63473175 Msa1206440:intron 40.0%
GACCACTAGACTAATTCTTC+AGG + chr8_1:63473161-63473180 None:intergenic 40.0%
! GAAGAATTAGTCTAGTGGTC+TGG - chr8_1:63473161-63473180 Msa1206440:intron 40.0%
! ATTACCCACATAGTGGGAAA+AGG - chr8_1:63473276-63473295 Msa1206440:intron 40.0%
! CTATTTGGCTGTATTGACGT+TGG + chr8_1:63473444-63473463 None:intergenic 40.0%
ATACAGCCAAATAGTTACCG+AGG - chr8_1:63473450-63473469 Msa1206440:intron 40.0%
TTGAGTCCTCGGTAACTATT+TGG + chr8_1:63473459-63473478 None:intergenic 40.0%
ATAGTTACCGAGGACTCAAT+AGG - chr8_1:63473460-63473479 Msa1206440:intron 40.0%
AAAGCAGTGTGTTTCATGGT+CGG + chr8_1:63473505-63473524 None:intergenic 40.0%
! CTATTTGGCTGTATTGACGT+TGG + chr8_1:63473444-63473463 None:intergenic 40.0%
ATACAGCCAAATAGTTACCG+AGG - chr8_1:63473450-63473469 Msa1206440:intron 40.0%
TTGAGTCCTCGGTAACTATT+TGG + chr8_1:63473459-63473478 None:intergenic 40.0%
ATAGTTACCGAGGACTCAAT+AGG - chr8_1:63473460-63473479 Msa1206440:intron 40.0%
AAAGCAGTGTGTTTCATGGT+CGG + chr8_1:63473505-63473524 None:intergenic 40.0%
! CTATTTGGCTGTATTGACGT+TGG + chr8_1:63473444-63473463 None:intergenic 40.0%
ATACAGCCAAATAGTTACCG+AGG - chr8_1:63473450-63473469 Msa1206440:intron 40.0%
TTGAGTCCTCGGTAACTATT+TGG + chr8_1:63473459-63473478 None:intergenic 40.0%
ATAGTTACCGAGGACTCAAT+AGG - chr8_1:63473460-63473479 Msa1206440:intron 40.0%
AAAGCAGTGTGTTTCATGGT+CGG + chr8_1:63473505-63473524 None:intergenic 40.0%
TGAAGAAGAGGTGAAAGATC+TGG - chr8_1:63473939-63473958 Msa1206440:intron 40.0%
!! GAAAGATCTGGTTTGTTGAG+TGG - chr8_1:63473951-63473970 Msa1206440:intron 40.0%
TTTGTTGAGTGGGAAGGATA+TGG - chr8_1:63473962-63473981 Msa1206440:intron 40.0%
GTGGGAAGGATATGGTAAAA+TGG - chr8_1:63473970-63473989 Msa1206440:intron 40.0%
! GCTCTTGATTTTTGCAAAGC+AGG + chr8_1:63474075-63474094 None:intergenic 40.0%
GCAGAAGAAACAAATTGGCA+AGG + chr8_1:63474176-63474195 None:intergenic 40.0%
!! TGTTTCTTCTGCATTTTGGC+AGG - chr8_1:63474184-63474203 Msa1206440:intron 40.0%
!! GTTTCTTCTGCATTTTGGCA+GGG - chr8_1:63474185-63474204 Msa1206440:intron 40.0%
TACATGGAAAGACATGGTTG+TGG - chr8_1:63474214-63474233 Msa1206440:intron 40.0%
! GCGACTACTAGTTTAGTAGA+CGG - chr8_1:63474333-63474352 Msa1206440:intron 40.0%
! GGGTGATTCTCTTTTACAGT+TGG - chr8_1:63474485-63474504 Msa1206440:intron 40.0%
! CTTCTTCTTGCCTCTGAAAA+TGG + chr8_1:63474621-63474640 None:intergenic 40.0%
CAGAGGCAAGAAGAAGAAAA+TGG - chr8_1:63474625-63474644 Msa1206440:intron 40.0%
TGTCATTGCTGGATGATTCT+GGG + chr8_1:63474662-63474681 None:intergenic 40.0%
TTGTCATTGCTGGATGATTC+TGG + chr8_1:63474663-63474682 None:intergenic 40.0%
CCATTAAGTAGTTCAGCTTC+AGG + chr8_1:63474747-63474766 None:intergenic 40.0%
CCTGAAGCTGAACTACTTAA+TGG - chr8_1:63474744-63474763 Msa1206440:intron 40.0%
TGCATGATACCCAAGAAGAA+AGG + chr8_1:63474851-63474870 None:intergenic 40.0%
TTTCTTCTTGGGTATCATGC+AGG - chr8_1:63474850-63474869 Msa1206440:intron 40.0%
ACTTCTCATCAGGAAGAATG+AGG - chr8_1:63474996-63475015 Msa1206440:CDS 40.0%
CGAGTGAAGTAATCCTAGAA+AGG - chr8_1:63475403-63475422 Msa1206440:five_prime_UTR 40.0%
GTGAAGTGAACTAGTGAGGT+GGG + chr8_1:63472287-63472306 None:intergenic 45.0%
TGAGGTGAAGTGAACTAGTG+AGG + chr8_1:63472291-63472310 None:intergenic 45.0%
GTACTTGTGCCCATTCTCAA+AGG - chr8_1:63472321-63472340 Msa1206440:three_prime_UTR 45.0%
GAGATAGAAGTGAGAGAGAG+AGG - chr8_1:63472346-63472365 Msa1206440:three_prime_UTR 45.0%
AAGAGGTTGTTGCTGTGATG+GGG + chr8_1:63472560-63472579 None:intergenic 45.0%
GTCTGAGAGTGAGAGTAAAG+AGG + chr8_1:63472577-63472596 None:intergenic 45.0%
GAGAGAGGGAGAATAAAGGA+AGG + chr8_1:63472607-63472626 None:intergenic 45.0%
TGAAGCTCTCAAAGGAGAGA+GGG + chr8_1:63472621-63472640 None:intergenic 45.0%
ACAGAGATATTCTCAGGTGG+TGG + chr8_1:63472680-63472699 None:intergenic 45.0%
CCAACAGAGATATTCTCAGG+TGG + chr8_1:63472683-63472702 None:intergenic 45.0%
CCACCTGAGAATATCTCTGT+TGG - chr8_1:63472680-63472699 Msa1206440:CDS 45.0%
GTCCCAACAGAGATATTCTC+AGG + chr8_1:63472686-63472705 None:intergenic 45.0%
! GAGGAGGTTAAGGTTTCTAG+TGG - chr8_1:63472737-63472756 Msa1206440:CDS 45.0%
!!! GTGGTTTTGTGGATCCTAGA+TGG - chr8_1:63472756-63472775 Msa1206440:CDS 45.0%
TGGGATGCTGTTATTGATGC+TGG - chr8_1:63472830-63472849 Msa1206440:CDS 45.0%
! ATTAGTCTAGTGGTCTGGGT+TGG - chr8_1:63473166-63473185 Msa1206440:intron 45.0%
! CATGCCTTTTCCCACTATGT+GGG + chr8_1:63473283-63473302 None:intergenic 45.0%
AAGCACCTTGGACTCATCAA+TGG - chr8_1:63473336-63473355 Msa1206440:intron 45.0%
! TTCCTTCTTCTGGGAAATGC+CGG - chr8_1:63473362-63473381 Msa1206440:intron 45.0%
CACTAATGCATCAACCACAC+CGG + chr8_1:63473384-63473403 None:intergenic 45.0%
TATTGACGTTGGACTTTCCC+TGG + chr8_1:63473433-63473452 None:intergenic 45.0%
CCAAACACCTATTGAGTCCT+CGG + chr8_1:63473470-63473489 None:intergenic 45.0%
AAGCACCTTGGACTCATCAA+TGG - chr8_1:63473336-63473355 Msa1206440:intron 45.0%
! TTCCTTCTTCTGGGAAATGC+CGG - chr8_1:63473362-63473381 Msa1206440:intron 45.0%
CACTAATGCATCAACCACAC+CGG + chr8_1:63473384-63473403 None:intergenic 45.0%
TATTGACGTTGGACTTTCCC+TGG + chr8_1:63473433-63473452 None:intergenic 45.0%
CCAAACACCTATTGAGTCCT+CGG + chr8_1:63473470-63473489 None:intergenic 45.0%
AAGCACCTTGGACTCATCAA+TGG - chr8_1:63473336-63473355 Msa1206440:intron 45.0%
! TTCCTTCTTCTGGGAAATGC+CGG - chr8_1:63473362-63473381 Msa1206440:intron 45.0%
CACTAATGCATCAACCACAC+CGG + chr8_1:63473384-63473403 None:intergenic 45.0%
TATTGACGTTGGACTTTCCC+TGG + chr8_1:63473433-63473452 None:intergenic 45.0%
CCAAACACCTATTGAGTCCT+CGG + chr8_1:63473470-63473489 None:intergenic 45.0%
!! ATCTGGTTTGTTGAGTGGGA+AGG - chr8_1:63473956-63473975 Msa1206440:intron 45.0%
!! AAAAGCACAGGGGTTTTAGC+TGG - chr8_1:63474046-63474065 Msa1206440:intron 45.0%
TCAAGAGCCCTATAGCTTCT+CGG - chr8_1:63474087-63474106 Msa1206440:intron 45.0%
!! TTTGGCAGGGTGGTTTTACA+TGG - chr8_1:63474198-63474217 Msa1206440:intron 45.0%
! TTGGTCCTTCCCATTTTCAG+AGG - chr8_1:63474608-63474627 Msa1206440:intron 45.0%
! TCTTGCCTCTGAAAATGGGA+AGG + chr8_1:63474616-63474635 None:intergenic 45.0%
CACTACAGGATTGTCATTGC+TGG + chr8_1:63474673-63474692 None:intergenic 45.0%
!! ATGGAGGTGTCAAACACTAC+AGG + chr8_1:63474687-63474706 None:intergenic 45.0%
TTGACACCTCCATTGTACCT+TGG - chr8_1:63474694-63474713 Msa1206440:intron 45.0%
TATCTGGTCGATAGCTTGAC+AGG - chr8_1:63474904-63474923 Msa1206440:CDS 45.0%
AACTCTTCTCTTCGTAGCAG+TGG - chr8_1:63474966-63474985 Msa1206440:CDS 45.0%
ACTCTTCTCTTCGTAGCAGT+GGG - chr8_1:63474967-63474986 Msa1206440:CDS 45.0%
ACAAGCAATGGCAAGCAACT+TGG - chr8_1:63475064-63475083 Msa1206440:CDS 45.0%
GGTGAAGTGAACTAGTGAGG+TGG + chr8_1:63472288-63472307 None:intergenic 50.0%
! GTTGTTGCTGTGATGGGGTT+TGG + chr8_1:63472555-63472574 None:intergenic 50.0%
CTGAAGCTCTCAAAGGAGAG+AGG + chr8_1:63472622-63472641 None:intergenic 50.0%
! TCTCCTTTGAGAGCTTCAGC+TGG - chr8_1:63472623-63472642 Msa1206440:CDS 50.0%
GTTCCAGCTGAAGCTCTCAA+AGG + chr8_1:63472629-63472648 None:intergenic 50.0%
TTCTGCTGTTCCTGTTGCTG+AGG - chr8_1:63472718-63472737 Msa1206440:CDS 50.0%
TCCTGTTGCTGAGGAGGTTA+AGG - chr8_1:63472727-63472746 Msa1206440:CDS 50.0%
ACCTTAACCTCCTCAGCAAC+AGG + chr8_1:63472731-63472750 None:intergenic 50.0%
!! TGGATCCTAGATGGGTTGCT+GGG - chr8_1:63472765-63472784 Msa1206440:CDS 50.0%
!! TAGATGGGTTGCTGGGACTT+GGG - chr8_1:63472772-63472791 Msa1206440:CDS 50.0%
! CTGGGTTGGAACTCTGAAGA+AGG - chr8_1:63473180-63473199 Msa1206440:intron 50.0%
! CCATGCCTTTTCCCACTATG+TGG + chr8_1:63473284-63473303 None:intergenic 50.0%
! CCACATAGTGGGAAAAGGCA+TGG - chr8_1:63473281-63473300 Msa1206440:intron 50.0%
TTACTGCTGGCATGTGTTCC+AGG - chr8_1:63473412-63473431 Msa1206440:intron 50.0%
TACTGCTGGCATGTGTTCCA+GGG - chr8_1:63473413-63473432 Msa1206440:intron 50.0%
CCGAGGACTCAATAGGTGTT+TGG - chr8_1:63473467-63473486 Msa1206440:intron 50.0%
TTACTGCTGGCATGTGTTCC+AGG - chr8_1:63473412-63473431 Msa1206440:intron 50.0%
TACTGCTGGCATGTGTTCCA+GGG - chr8_1:63473413-63473432 Msa1206440:intron 50.0%
CCGAGGACTCAATAGGTGTT+TGG - chr8_1:63473467-63473486 Msa1206440:intron 50.0%
TTACTGCTGGCATGTGTTCC+AGG - chr8_1:63473412-63473431 Msa1206440:intron 50.0%
TACTGCTGGCATGTGTTCCA+GGG - chr8_1:63473413-63473432 Msa1206440:intron 50.0%
CCGAGGACTCAATAGGTGTT+TGG - chr8_1:63473467-63473486 Msa1206440:intron 50.0%
AACGTGGCCGAGAAGCTATA+GGG + chr8_1:63474097-63474116 None:intergenic 50.0%
ATCCACCATAGCCGTGTCAA+CGG + chr8_1:63474120-63474139 None:intergenic 50.0%
!! TCTTCTGCATTTTGGCAGGG+TGG - chr8_1:63474188-63474207 Msa1206440:intron 50.0%
ACACCTCCATTGTACCTTGG+TGG - chr8_1:63474697-63474716 Msa1206440:intron 50.0%
CACCTCCATTGTACCTTGGT+GGG - chr8_1:63474698-63474717 Msa1206440:intron 50.0%
! CTTTTGATCCATGCCCACCA+AGG + chr8_1:63474714-63474733 None:intergenic 50.0%
! CTTGGTGGGCATGGATCAAA+AGG - chr8_1:63474712-63474731 Msa1206440:intron 50.0%
GTAGTTCAGCTTCAGGGAGA+TGG + chr8_1:63474740-63474759 None:intergenic 50.0%
GTCGATAGCTTGACAGGAGT+AGG - chr8_1:63474910-63474929 Msa1206440:CDS 50.0%
CTCTTCTCTTCGTAGCAGTG+GGG - chr8_1:63474968-63474987 Msa1206440:CDS 50.0%
TCTTCTCTTCGTAGCAGTGG+GGG - chr8_1:63474969-63474988 Msa1206440:CDS 50.0%
TGCTGTTCCTGTTGCTGAGG+AGG - chr8_1:63472721-63472740 Msa1206440:CDS 55.0%
!! GTGGATCCTAGATGGGTTGC+TGG - chr8_1:63472764-63472783 Msa1206440:CDS 55.0%
CAAGTCCCAGCAACCCATCT+AGG + chr8_1:63472773-63472792 None:intergenic 55.0%
!! CTAGATGGGTTGCTGGGACT+TGG - chr8_1:63472771-63472790 Msa1206440:CDS 55.0%
TGTGTGCGTAGCAAGCACCT+TGG - chr8_1:63473324-63473343 Msa1206440:intron 55.0%
CACCGGCATTTCCCAGAAGA+AGG + chr8_1:63473367-63473386 None:intergenic 55.0%
! TCTTCTGGGAAATGCCGGTG+TGG - chr8_1:63473367-63473386 Msa1206440:intron 55.0%
GTGTGTTTCATGGTCGGCGT+TGG + chr8_1:63473499-63473518 None:intergenic 55.0%
AGTGTGCGTAGCAAGCACCT+TGG - chr8_1:63473528-63473547 Msa1206440:intron 55.0%
CACCGGCATTTCCCAGAAGA+AGG + chr8_1:63473367-63473386 None:intergenic 55.0%
! TCTTCTGGGAAATGCCGGTG+TGG - chr8_1:63473367-63473386 Msa1206440:intron 55.0%
GTGTGTTTCATGGTCGGCGT+TGG + chr8_1:63473499-63473518 None:intergenic 55.0%
AGTGTGCGTAGCAAGCACCT+TGG - chr8_1:63473528-63473547 Msa1206440:intron 55.0%
CACCGGCATTTCCCAGAAGA+AGG + chr8_1:63473367-63473386 None:intergenic 55.0%
! TCTTCTGGGAAATGCCGGTG+TGG - chr8_1:63473367-63473386 Msa1206440:intron 55.0%
GTGTGTTTCATGGTCGGCGT+TGG + chr8_1:63473499-63473518 None:intergenic 55.0%
GAACGTGGCCGAGAAGCTAT+AGG + chr8_1:63474098-63474117 None:intergenic 55.0%
ATAGCCGTGTCAACGGAACG+TGG + chr8_1:63474113-63474132 None:intergenic 55.0%
ACGTTCCGTTGACACGGCTA+TGG - chr8_1:63474112-63474131 Msa1206440:intron 55.0%
TTCCGTTGACACGGCTATGG+TGG - chr8_1:63474115-63474134 Msa1206440:intron 55.0%
TGCCCACCAAGGTACAATGG+AGG + chr8_1:63474703-63474722 None:intergenic 55.0%
CCATGCCCACCAAGGTACAA+TGG + chr8_1:63474706-63474725 None:intergenic 55.0%
! CCATTGTACCTTGGTGGGCA+TGG - chr8_1:63474703-63474722 Msa1206440:intron 55.0%
CTTCTCTTCGTAGCAGTGGG+GGG - chr8_1:63474970-63474989 Msa1206440:CDS 55.0%
!! TGGGGGGAGTACTTCTCATC+AGG - chr8_1:63474986-63475005 Msa1206440:CDS 55.0%
GCAATGGCAAGCAACTTGGC+AGG - chr8_1:63475068-63475087 Msa1206440:CDS 55.0%
TCGGCCACGTTCCGTTGACA+CGG - chr8_1:63474106-63474125 Msa1206440:intron 60.0%
GCAGGTCGTGCCGCAATGAT+AGG - chr8_1:63474868-63474887 Msa1206440:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63472273 63475452 63472273 ID=Msa1206440;Name=Msa1206440
chr8_1 mRNA 63472273 63475452 63472273 ID=Msa1206440-mRNA-1;Parent=Msa1206440;Name=Msa1206440-mRNA-1;_AED=0.21;_eAED=0.21;_QI=203|1|1|1|1|1|3|330|254
chr8_1 exon 63472273 63472853 63472273 ID=Msa1206440-mRNA-1:exon:20596;Parent=Msa1206440-mRNA-1
chr8_1 exon 63472960 63473097 63472960 ID=Msa1206440-mRNA-1:exon:20595;Parent=Msa1206440-mRNA-1
chr8_1 exon 63474874 63475452 63474874 ID=Msa1206440-mRNA-1:exon:20594;Parent=Msa1206440-mRNA-1
chr8_1 five_prime_UTR 63475250 63475452 63475250 ID=Msa1206440-mRNA-1:five_prime_utr;Parent=Msa1206440-mRNA-1
chr8_1 CDS 63474874 63475249 63474874 ID=Msa1206440-mRNA-1:cds;Parent=Msa1206440-mRNA-1
chr8_1 CDS 63472960 63473097 63472960 ID=Msa1206440-mRNA-1:cds;Parent=Msa1206440-mRNA-1
chr8_1 CDS 63472603 63472853 63472603 ID=Msa1206440-mRNA-1:cds;Parent=Msa1206440-mRNA-1
chr8_1 three_prime_UTR 63472273 63472602 63472273 ID=Msa1206440-mRNA-1:three_prime_utr;Parent=Msa1206440-mRNA-1
Gene Sequence

>Msa1206440

ATGTCAACAACTATGTCTATGTCTATGGCTTCTTTTTCTCCTCTTACTAGAATCTCAACCACTCATTCTTCACTCTCCAAACCCCATCACAGCAACAACCTCTTTACTCTCACTCTCAGACCAAAAAACCTTCCTTTATTCTCCCTCTCTCCTTTGAGAGCTTCAGCTGGAACTTCTGATTCAGCTGAAACTGCAGTGAAACCACCACCTGAGAATATCTCTGTTGGGACAAATGGGTCTGCTTCTGCTGTTCCTGTTGCTGAGGAGGTTAAGGTTTCTAGTGGTTTTGTGGATCCTAGATGGGTTGCTGGGACTTGGGATTTGATGCAGTTTAGGAAAAATGGTACCACTGATTGGGATGCTGTTATTGATGCTGAGGCAAGAAGAAGAAAATGGCTCGAGACTAACCCAGAATCATCCAGCAATGACAATCCTGTAGTGTTTGACACCTCCATTGTACCTTGGTGGGCATGGATCAAAAGGTTCCATCTCCCTGAAGCTGAACTACTTAATGGTCGTGCCGCAATGATAGGATTCTTTATGACATATCTGGTCGATAGCTTGACAGGAGTAGGTCTTGTTGACCAAATGAACAACTTCTTTTGCAAAACTCTTCTCTTCGTAGCAGTGGGGGGAGTACTTCTCATCAGGAAGAATGAGGATGTTGATACTTTTAAGAAATTATTGGAGGAGACTACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAGAACTCAAGCACTTCCAAAAAAGATTAG

Protein sequence

>Msa1206440

MSTTMSMSMASFSPLTRISTTHSSLSKPHHSNNLFTLTLRPKNLPLFSLSPLRASAGTSDSAETAVKPPPENISVGTNGSASAVPVAEEVKVSSGFVDPRWVAGTWDLMQFRKNGTTDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMTYLVDSLTGVGLVDQMNNFFCKTLLFVAVGGVLLIRKNEDVDTFKKLLEETTFYDKQWQATWQDENSSTSKKD*