AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337950 MtrunA17_Chr4g0073551 95.333 150 5 1 1 150 1 148 2.35e-87 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337950 AT2G24090.1 85.000 80 12 0 71 150 66 145 6.03e-44 142

Find 49 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATCAGCAAAGCGATTT+AGG 0.147866 tig0001530:+54759 Msa1337950:intron
CAAGATTGAACAAACCATTT+TGG 0.208259 tig0001530:-54870 None:intergenic
TTTCACGAGTCACTGATATT+TGG 0.257574 tig0001530:-56882 None:intergenic
AGTGACTATGACAATGTAAT+TGG 0.287106 tig0001530:+56692 Msa1337950:CDS
ATTTAGCATGGTCCTGTCTA+AGG 0.305154 tig0001530:+56783 Msa1337950:three_prime_UTR
GAAATTGAGACTCTCCAAAA+TGG 0.323830 tig0001530:+54856 Msa1337950:CDS
GGCATCAGCAAAGCGATTTA+GGG 0.327417 tig0001530:+54760 Msa1337950:intron
CGATTTAGGGTTACCGGTGC+TGG 0.339311 tig0001530:+54773 Msa1337950:CDS
TAGTAACCATGGAATGGTTT+TGG 0.345248 tig0001530:-54599 None:intergenic
CAAATGGTGTAAAAGCATAT+TGG 0.367232 tig0001530:-56819 None:intergenic
AGACATATGTAATGCTAAAC+AGG 0.381633 tig0001530:-56979 None:intergenic
GCAAAGCGATTTAGGGTTAC+CGG 0.390331 tig0001530:+54767 Msa1337950:CDS
GTAAATGTGAATAGTAGAAA+TGG 0.410222 tig0001530:-56950 None:intergenic
TCAATTCCCTCAAACTCAAT+TGG 0.415519 tig0001530:+54547 Msa1337950:CDS
GAATTGACATTGTTTGAGAA+AGG 0.445692 tig0001530:-54531 None:intergenic
CCATGTTAAGAGTGTGTTTG+TGG 0.447071 tig0001530:-54404 None:intergenic
TACTAGACCAATTGAGTTTG+AGG 0.451953 tig0001530:-54554 None:intergenic
ACTAGACCAATTGAGTTTGA+GGG 0.466679 tig0001530:-54553 None:intergenic
CTCACTATCGTATCCGCTAA+AGG 0.476723 tig0001530:+54636 Msa1337950:CDS
AAAATAAAACAACTTTCAAA+TGG 0.481515 tig0001530:-56835 None:intergenic
TTGATTTCGTTTCAATCAAG+TGG 0.495336 tig0001530:-54287 None:intergenic
TTTCTGTTTACTTTCAGATA+CGG 0.499482 tig0001530:-56722 None:intergenic
AAAATCGTGCGTAGGAGAGC+AGG 0.513349 tig0001530:+54797 Msa1337950:CDS
AGGATAGGATAGAACCTTGT+GGG 0.517887 tig0001530:-54673 None:intergenic
GTAAGATTTCTACGCGGTTG+TGG 0.520009 tig0001530:-54328 None:intergenic
ACACACTCTTAACATGGCGT+TGG 0.535399 tig0001530:+54410 Msa1337950:exon
CATGGCGTTGGCTTCTGCAA+CGG 0.537190 tig0001530:+54422 Msa1337950:exon
TCTTAACCAAAACCATTCCA+TGG 0.537305 tig0001530:+54593 Msa1337950:CDS
TGTAATGCTAAACAGGAAGA+TGG 0.539942 tig0001530:-56972 None:intergenic
TTTCAATTTGTAGCCTTTAG+CGG 0.541342 tig0001530:-54649 None:intergenic
GACTTCACAAATCCTTAGAC+AGG 0.543426 tig0001530:-56795 None:intergenic
AATTGTTATTACATAATACA+AGG 0.547514 tig0001530:-56912 None:intergenic
GCGAGGAGAAGTAGTAACCA+TGG 0.549868 tig0001530:-54610 None:intergenic
TGAAAGTCTGAAGGCGGCAA+AGG 0.556511 tig0001530:-54457 None:intergenic
CGAGTAGAGGAAGAAGAAGA+TGG 0.561226 tig0001530:-54483 None:intergenic
GTTCTTGTAAATTGTGTGTG+AGG 0.563309 tig0001530:-54382 None:intergenic
TTAGCATTACATATGTCTTG+TGG 0.568915 tig0001530:+56984 Msa1337950:three_prime_UTR
CCACAAACACACTCTTAACA+TGG 0.593623 tig0001530:+54404 Msa1337950:exon
TCTGAATTATGAATTTAGCA+TGG 0.600627 tig0001530:+56771 Msa1337950:three_prime_UTR
GAGAAGTAGTAACCATGGAA+TGG 0.608033 tig0001530:-54605 None:intergenic
AAGTCTGAAGGCGGCAAAGG+AGG 0.608560 tig0001530:-54454 None:intergenic
GGCGGCAAAGGAGGAGACTG+TGG 0.617952 tig0001530:-54445 None:intergenic
AGATGGCGGTGAAAGTCTGA+AGG 0.634963 tig0001530:-54466 None:intergenic
ACTGAAAGAGACACGAGTAG+AGG 0.649199 tig0001530:-54496 None:intergenic
GATACGATAGTGAGAGAGCG+AGG 0.653895 tig0001530:-54627 None:intergenic
CTACAAATTGAAAACCCACA+AGG 0.682218 tig0001530:+54659 Msa1337950:CDS
TGGCGGTGAAAGTCTGAAGG+CGG 0.693274 tig0001530:-54463 None:intergenic
GTAGAGGAAGAAGAAGATGG+CGG 0.711470 tig0001530:-54480 None:intergenic
GATTGAGTAAGATTTCTACG+CGG 0.814577 tig0001530:-54334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTTGTGAATT+AGG + tig0001530:56045-56064 Msa1337950:intron 10.0%
!!! TTAATTGAATTTCATTTTTC+AGG + tig0001530:54739-54758 Msa1337950:intron 15.0%
!! AAAATAAAACAACTTTCAAA+TGG - tig0001530:56838-56857 None:intergenic 15.0%
!!! TTTATTTTACAAATGAATTG+AGG + tig0001530:56850-56869 Msa1337950:three_prime_UTR 15.0%
!!! AATTGTTATTACATAATACA+AGG - tig0001530:56915-56934 None:intergenic 15.0%
!!! TAAATCAATTTTTTTCCTTA+TGG + tig0001530:57007-57026 Msa1337950:three_prime_UTR 15.0%
!! ATATTATCATCATTCTTCTT+TGG + tig0001530:54919-54938 Msa1337950:intron 20.0%
!!! TGATTGATAATTCATAAGAT+AGG - tig0001530:55580-55599 None:intergenic 20.0%
!! GATATTGTTAATTAGTAAGT+TGG + tig0001530:55721-55740 Msa1337950:intron 20.0%
!!! TCATGTTATTTGTTAATAAG+AGG + tig0001530:55760-55779 Msa1337950:intron 20.0%
!!! CATGTTATTTGTTAATAAGA+GGG + tig0001530:55761-55780 Msa1337950:intron 20.0%
!!! ATGTTATTTGTTAATAAGAG+GGG + tig0001530:55762-55781 Msa1337950:intron 20.0%
!! TTAAATTAGCTATGAAATCA+TGG + tig0001530:55958-55977 Msa1337950:intron 20.0%
!! TAAATTAGCTATGAAATCAT+GGG + tig0001530:55959-55978 Msa1337950:intron 20.0%
!!! ATTTTTACCGAATTTTTTCT+TGG + tig0001530:56558-56577 Msa1337950:intron 20.0%
!!! TTTTTACCGAATTTTTTCTT+GGG + tig0001530:56559-56578 Msa1337950:intron 20.0%
!! AAAATTCCCAAGAAAAAATT+CGG - tig0001530:56568-56587 None:intergenic 20.0%
!! ACGAACAATTAAGTTAATTA+TGG + tig0001530:56610-56629 Msa1337950:intron 20.0%
! TACATAGTTAAACTTGAAGT+GGG - tig0001530:54707-54726 None:intergenic 25.0%
! ATACATAGTTAAACTTGAAG+TGG - tig0001530:54708-54727 None:intergenic 25.0%
! TCTACAAAAAGAATAAGAAG+AGG + tig0001530:54834-54853 Msa1337950:CDS 25.0%
!! AAGTTTTACTACATGAAAGT+GGG + tig0001530:55197-55216 Msa1337950:intron 25.0%
!! GACATTGTAGATATTTTGTT+TGG - tig0001530:55393-55412 None:intergenic 25.0%
! AGTGATAAAAACTTGGTATT+TGG - tig0001530:55693-55712 None:intergenic 25.0%
! TCTATTGAGTGATAAAAACT+TGG - tig0001530:55700-55719 None:intergenic 25.0%
!! AAGTTTTTATCACTCAATAG+AGG + tig0001530:55699-55718 Msa1337950:intron 25.0%
!! AAAATTTGAAAAGTGCAACT+TGG - tig0001530:56120-56139 None:intergenic 25.0%
! ATCTCAGCAATAAATATTTG+CGG - tig0001530:56189-56208 None:intergenic 25.0%
! TGATAAATTACAACCTTCTA+TGG + tig0001530:56231-56250 Msa1337950:intron 25.0%
! GAATGATATTTGATATACTG+TGG + tig0001530:56479-56498 Msa1337950:intron 25.0%
! TTTCTGTTTACTTTCAGATA+CGG - tig0001530:56725-56744 None:intergenic 25.0%
! TCTGAATTATGAATTTAGCA+TGG + tig0001530:56771-56790 Msa1337950:three_prime_UTR 25.0%
! GTAAATGTGAATAGTAGAAA+TGG - tig0001530:56953-56972 None:intergenic 25.0%
! TTTACAACAAAAAGTCCATA+AGG - tig0001530:57025-57044 None:intergenic 25.0%
!!! ACTTTTTGTTGTAAATCATG+TGG + tig0001530:57030-57049 Msa1337950:three_prime_UTR 25.0%
TTGATTTCGTTTCAATCAAG+TGG - tig0001530:54290-54309 None:intergenic 30.0%
GAATTGACATTGTTTGAGAA+AGG - tig0001530:54534-54553 None:intergenic 30.0%
!!! GAATGGTTTTGGTTAAGAAT+TGG - tig0001530:54591-54610 None:intergenic 30.0%
TTTCAATTTGTAGCCTTTAG+CGG - tig0001530:54652-54671 None:intergenic 30.0%
! CAAGATTGAACAAACCATTT+TGG - tig0001530:54873-54892 None:intergenic 30.0%
TCATTGCTTACAACTGTATT+TGG + tig0001530:54961-54980 Msa1337950:intron 30.0%
!! GGTGGTATTTGTTTACTTTT+TGG + tig0001530:54982-55001 Msa1337950:intron 30.0%
! GAAGTTTTACTACATGAAAG+TGG + tig0001530:55196-55215 Msa1337950:intron 30.0%
ACACATGAAAAATAGAGAGA+AGG - tig0001530:55329-55348 None:intergenic 30.0%
ATATATCATGTAGCTCAAGT+AGG + tig0001530:55426-55445 Msa1337950:intron 30.0%
TCCTATATGAACATGGAAAT+CGG - tig0001530:55468-55487 None:intergenic 30.0%
TGATGTCAAAACGGTTTAAA+GGG - tig0001530:55496-55515 None:intergenic 30.0%
GATAATTCATAAGATAGGCA+AGG - tig0001530:55575-55594 None:intergenic 30.0%
TGAGAGAGAGAAAAAGATTA+AGG - tig0001530:55630-55649 None:intergenic 30.0%
! AATTAGTAAGTTGGCTAACT+AGG + tig0001530:55730-55749 Msa1337950:intron 30.0%
! TGCTGATTGTTTGTATTCAA+GGG + tig0001530:55863-55882 Msa1337950:intron 30.0%
! AGGCATTTTGTTAAGATTTG+TGG - tig0001530:56084-56103 None:intergenic 30.0%
ATCTTAACAAAATGCCTTGA+TGG + tig0001530:56087-56106 Msa1337950:intron 30.0%
TCTTAACAAAATGCCTTGAT+GGG + tig0001530:56088-56107 Msa1337950:intron 30.0%
GAGGACTAAAATAAAGTCAT+TGG + tig0001530:56261-56280 Msa1337950:intron 30.0%
CAGTATAGAATTTCATCACT+TGG + tig0001530:56376-56395 Msa1337950:intron 30.0%
ATAGAATTTCATCACTTGGA+AGG + tig0001530:56380-56399 Msa1337950:intron 30.0%
AGTGACTATGACAATGTAAT+TGG + tig0001530:56692-56711 Msa1337950:CDS 30.0%
! CAAATGGTGTAAAAGCATAT+TGG - tig0001530:56822-56841 None:intergenic 30.0%
AGACATATGTAATGCTAAAC+AGG - tig0001530:56982-57001 None:intergenic 30.0%
TTAGCATTACATATGTCTTG+TGG + tig0001530:56984-57003 Msa1337950:three_prime_UTR 30.0%
GATTGAGTAAGATTTCTACG+CGG - tig0001530:54337-54356 None:intergenic 35.0%
GTTCTTGTAAATTGTGTGTG+AGG - tig0001530:54385-54404 None:intergenic 35.0%
TCAATTCCCTCAAACTCAAT+TGG + tig0001530:54547-54566 Msa1337950:CDS 35.0%
ACTAGACCAATTGAGTTTGA+GGG - tig0001530:54556-54575 None:intergenic 35.0%
TACTAGACCAATTGAGTTTG+AGG - tig0001530:54557-54576 None:intergenic 35.0%
!!! GTTTTGGTTAAGAATTGGAG+CGG - tig0001530:54586-54605 None:intergenic 35.0%
TCTTAACCAAAACCATTCCA+TGG + tig0001530:54593-54612 Msa1337950:CDS 35.0%
! TAGTAACCATGGAATGGTTT+TGG - tig0001530:54602-54621 None:intergenic 35.0%
CTACAAATTGAAAACCCACA+AGG + tig0001530:54659-54678 Msa1337950:CDS 35.0%
GAAATTGAGACTCTCCAAAA+TGG + tig0001530:54856-54875 Msa1337950:CDS 35.0%
TTGCTTACAACTGTATTTGG+TGG + tig0001530:54964-54983 Msa1337950:intron 35.0%
! TAGCTTGTATCTAACTCCTA+AGG - tig0001530:55068-55087 None:intergenic 35.0%
TTAGGAGTTAGATACAAGCT+AGG + tig0001530:55067-55086 Msa1337950:intron 35.0%
TAGGAGTTAGATACAAGCTA+GGG + tig0001530:55068-55087 Msa1337950:intron 35.0%
! TTTTGTGCAATTGTTATGCG+CGG + tig0001530:55114-55133 Msa1337950:intron 35.0%
!! AAAGTGGGTGACTTTTTCTT+CGG + tig0001530:55212-55231 Msa1337950:intron 35.0%
GTTGTGAGATTACTAGAAGA+GGG + tig0001530:55240-55259 Msa1337950:intron 35.0%
!! TTTTAGGAAATGGGAATGGA+TGG + tig0001530:55267-55286 Msa1337950:intron 35.0%
TGAAAAATAGAGAGAAGGCA+GGG - tig0001530:55324-55343 None:intergenic 35.0%
ATGAAAAATAGAGAGAAGGC+AGG - tig0001530:55325-55344 None:intergenic 35.0%
TCCGATTTCCATGTTCATAT+AGG + tig0001530:55464-55483 Msa1337950:intron 35.0%
GTGATGTCAAAACGGTTTAA+AGG - tig0001530:55497-55516 None:intergenic 35.0%
TCATAAGATAGGCAAGGTAA+AGG - tig0001530:55569-55588 None:intergenic 35.0%
ACTTATCACACAATTGAGTG+TGG + tig0001530:55603-55622 Msa1337950:intron 35.0%
AAACAATCAGCAGAGATTTG+AGG - tig0001530:55855-55874 None:intergenic 35.0%
! CTGCTGATTGTTTGTATTCA+AGG + tig0001530:55862-55881 Msa1337950:intron 35.0%
ATGAAATCATGGGTTTGAAC+TGG + tig0001530:55969-55988 Msa1337950:intron 35.0%
GACAGTAGAACAGAAAATTG+TGG - tig0001530:56167-56186 None:intergenic 35.0%
AACCTTCTATGGAAAATGTG+AGG + tig0001530:56242-56261 Msa1337950:intron 35.0%
TCAATTGAACTGAACTGTAG+TGG + tig0001530:56308-56327 Msa1337950:intron 35.0%
! AAATCCAAGTGTTGTTAGGA+TGG - tig0001530:56450-56469 None:intergenic 35.0%
! CTAGAAATCCAAGTGTTGTT+AGG - tig0001530:56454-56473 None:intergenic 35.0%
TCAACCAAAATGCCACATTT+CGG - tig0001530:56534-56553 None:intergenic 35.0%
TTTCACGAGTCACTGATATT+TGG - tig0001530:56885-56904 None:intergenic 35.0%
TGTAATGCTAAACAGGAAGA+TGG - tig0001530:56975-56994 None:intergenic 35.0%
! CCATGTTAAGAGTGTGTTTG+TGG - tig0001530:54407-54426 None:intergenic 40.0%
CCACAAACACACTCTTAACA+TGG + tig0001530:54404-54423 Msa1337950:exon 40.0%
GAGAAGTAGTAACCATGGAA+TGG - tig0001530:54608-54627 None:intergenic 40.0%
AGGATAGGATAGAACCTTGT+GGG - tig0001530:54676-54695 None:intergenic 40.0%
! AAGTGGGTTTGAAAGAGGAT+AGG - tig0001530:54691-54710 None:intergenic 40.0%
! ACTTGAAGTGGGTTTGAAAG+AGG - tig0001530:54696-54715 None:intergenic 40.0%
! CTAACTCCTAAGGTACTCTT+GGG - tig0001530:55058-55077 None:intergenic 40.0%
! TCTAACTCCTAAGGTACTCT+TGG - tig0001530:55059-55078 None:intergenic 40.0%
GTTAGATACAAGCTAGGGTA+TGG + tig0001530:55073-55092 Msa1337950:intron 40.0%
!! AAGTGGGTGACTTTTTCTTC+GGG + tig0001530:55213-55232 Msa1337950:intron 40.0%
GGTTGTGAGATTACTAGAAG+AGG + tig0001530:55239-55258 Msa1337950:intron 40.0%
!! TGGCTTTTAGGAAATGGGAA+TGG + tig0001530:55263-55282 Msa1337950:intron 40.0%
ATGGGAATGGATGGAAAAGT+TGG + tig0001530:55276-55295 Msa1337950:intron 40.0%
ATGGATGGAAAAGTTGGACT+TGG + tig0001530:55282-55301 Msa1337950:intron 40.0%
GGCATCATCCTATATGAACA+TGG - tig0001530:55475-55494 None:intergenic 40.0%
CTTGATGCGTGATGTCAAAA+CGG - tig0001530:55505-55524 None:intergenic 40.0%
ACAAGATAGGTCACTCTCTA+AGG - tig0001530:55790-55809 None:intergenic 40.0%
GAGTGACCTATCTTGTCAAA+TGG + tig0001530:55794-55813 Msa1337950:intron 40.0%
GACCTATCTTGTCAAATGGA+AGG + tig0001530:55798-55817 Msa1337950:intron 40.0%
CTCCTTCCATTTGACAAGAT+AGG - tig0001530:55803-55822 None:intergenic 40.0%
TCTTGTCAAATGGAAGGAGT+AGG + tig0001530:55804-55823 Msa1337950:intron 40.0%
CTTGTCAAATGGAAGGAGTA+GGG + tig0001530:55805-55824 Msa1337950:intron 40.0%
TTGTCAAATGGAAGGAGTAG+GGG + tig0001530:55806-55825 Msa1337950:intron 40.0%
AGTAGGGGGCTTAATGAATT+TGG + tig0001530:55821-55840 Msa1337950:intron 40.0%
GTAGGGGGCTTAATGAATTT+GGG + tig0001530:55822-55841 Msa1337950:intron 40.0%
AACTTGGAATACACCCATCA+AGG - tig0001530:56104-56123 None:intergenic 40.0%
! GTCCTCACATTTTCCATAGA+AGG - tig0001530:56247-56266 None:intergenic 40.0%
! AGTGTTGTTAGGATGGATGT+GGG - tig0001530:56443-56462 None:intergenic 40.0%
! AAGTGTTGTTAGGATGGATG+TGG - tig0001530:56444-56463 None:intergenic 40.0%
ACATCCATCCTAACAACACT+TGG + tig0001530:56443-56462 Msa1337950:intron 40.0%
CAACCAAAATGCCACATTTC+GGG - tig0001530:56533-56552 None:intergenic 40.0%
ATTTAGCATGGTCCTGTCTA+AGG + tig0001530:56783-56802 Msa1337950:three_prime_UTR 40.0%
GACTTCACAAATCCTTAGAC+AGG - tig0001530:56798-56817 None:intergenic 40.0%
GTAAGATTTCTACGCGGTTG+TGG - tig0001530:54331-54350 None:intergenic 45.0%
ACACACTCTTAACATGGCGT+TGG + tig0001530:54410-54429 Msa1337950:exon 45.0%
GTAGAGGAAGAAGAAGATGG+CGG - tig0001530:54483-54502 None:intergenic 45.0%
CGAGTAGAGGAAGAAGAAGA+TGG - tig0001530:54486-54505 None:intergenic 45.0%
ACTGAAAGAGACACGAGTAG+AGG - tig0001530:54499-54518 None:intergenic 45.0%
CTCACTATCGTATCCGCTAA+AGG + tig0001530:54636-54655 Msa1337950:CDS 45.0%
GAGGATAGGATAGAACCTTG+TGG - tig0001530:54677-54696 None:intergenic 45.0%
AGGCATCAGCAAAGCGATTT+AGG + tig0001530:54759-54778 Msa1337950:intron 45.0%
GGCATCAGCAAAGCGATTTA+GGG + tig0001530:54760-54779 Msa1337950:intron 45.0%
! GCAAAGCGATTTAGGGTTAC+CGG + tig0001530:54767-54786 Msa1337950:CDS 45.0%
! AAGGTACTCTTGGGCAAGAA+AGG - tig0001530:55049-55068 None:intergenic 45.0%
!! TTCTTGCCCAAGAGTACCTT+AGG + tig0001530:55049-55068 Msa1337950:intron 45.0%
TACAAGCTAGGGTATGGAAC+TGG + tig0001530:55079-55098 Msa1337950:intron 45.0%
!! GGTGACTTTTTCTTCGGGTT+GGG + tig0001530:55218-55237 Msa1337950:intron 45.0%
GTGAGATTACTAGAAGAGGG+TGG + tig0001530:55243-55262 Msa1337950:intron 45.0%
! ACTAGAAGAGGGTGGCTTTT+AGG + tig0001530:55251-55270 Msa1337950:intron 45.0%
!! AGAGGGTGGCTTTTAGGAAA+TGG + tig0001530:55257-55276 Msa1337950:intron 45.0%
!! GAGGGTGGCTTTTAGGAAAT+GGG + tig0001530:55258-55277 Msa1337950:intron 45.0%
TGTCAAATGGAAGGAGTAGG+GGG + tig0001530:55807-55826 Msa1337950:intron 45.0%
GGGGCTTAATGAATTTGGGA+GGG + tig0001530:55826-55845 Msa1337950:intron 45.0%
GCTTAATGAATTTGGGAGGG+TGG + tig0001530:55829-55848 Msa1337950:intron 45.0%
TGTTAGGATGGATGTGGGTT+TGG - tig0001530:56438-56457 None:intergenic 45.0%
! TCACCCGAAATGTGGCATTT+TGG + tig0001530:56527-56546 Msa1337950:intron 45.0%
TGAAAGTCTGAAGGCGGCAA+AGG - tig0001530:54460-54479 None:intergenic 50.0%
! AGATGGCGGTGAAAGTCTGA+AGG - tig0001530:54469-54488 None:intergenic 50.0%
GCGAGGAGAAGTAGTAACCA+TGG - tig0001530:54613-54632 None:intergenic 50.0%
GATACGATAGTGAGAGAGCG+AGG - tig0001530:54630-54649 None:intergenic 50.0%
! ACGCACGATTTTTCCAGCAC+CGG - tig0001530:54789-54808 None:intergenic 50.0%
GTGCTGGAAAAATCGTGCGT+AGG + tig0001530:54789-54808 Msa1337950:CDS 50.0%
AAAATCGTGCGTAGGAGAGC+AGG + tig0001530:54797-54816 Msa1337950:CDS 50.0%
!! GGGTGACTTTTTCTTCGGGT+TGG + tig0001530:55217-55236 Msa1337950:intron 50.0%
GGGGGCTTAATGAATTTGGG+AGG + tig0001530:55825-55844 Msa1337950:intron 50.0%
TGTGGAGAAGCTCAAGTGTC+TGG + tig0001530:56497-56516 Msa1337950:intron 50.0%
AGAAGCTCAAGTGTCTGGCT+TGG + tig0001530:56502-56521 Msa1337950:intron 50.0%
GCTTGGATTCACCCGAAATG+TGG + tig0001530:56519-56538 Msa1337950:intron 50.0%
!! CATGGCGTTGGCTTCTGCAA+CGG + tig0001530:54422-54441 Msa1337950:exon 55.0%
AAGTCTGAAGGCGGCAAAGG+AGG - tig0001530:54457-54476 None:intergenic 55.0%
TGGCGGTGAAAGTCTGAAGG+CGG - tig0001530:54466-54485 None:intergenic 55.0%
! CGATTTAGGGTTACCGGTGC+TGG + tig0001530:54773-54792 Msa1337950:CDS 55.0%
GGCGGCAAAGGAGGAGACTG+TGG - tig0001530:54448-54467 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0001530 gene 54282 57095 54282 ID=Msa1337950;Name=Msa1337950
tig0001530 mRNA 54282 57095 54282 ID=Msa1337950-mRNA-1;Parent=Msa1337950;Name=Msa1337950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=141|1|1|1|1|1|3|341|150
tig0001530 exon 54282 54680 54282 ID=Msa1337950-mRNA-1:exon:1404;Parent=Msa1337950-mRNA-1
tig0001530 exon 54761 54877 54761 ID=Msa1337950-mRNA-1:exon:1405;Parent=Msa1337950-mRNA-1
tig0001530 exon 56677 57095 56677 ID=Msa1337950-mRNA-1:exon:1406;Parent=Msa1337950-mRNA-1
tig0001530 five_prime_UTR 54282 54422 54282 ID=Msa1337950-mRNA-1:five_prime_utr;Parent=Msa1337950-mRNA-1
tig0001530 CDS 54423 54680 54423 ID=Msa1337950-mRNA-1:cds;Parent=Msa1337950-mRNA-1
tig0001530 CDS 54761 54877 54761 ID=Msa1337950-mRNA-1:cds;Parent=Msa1337950-mRNA-1
tig0001530 CDS 56677 56754 56677 ID=Msa1337950-mRNA-1:cds;Parent=Msa1337950-mRNA-1
tig0001530 three_prime_UTR 56755 57095 56755 ID=Msa1337950-mRNA-1:three_prime_utr;Parent=Msa1337950-mRNA-1
Gene Sequence

>Msa1337950

ATGGCGTTGGCTTCTGCAACGGCCACAGTCTCCTCCTTTGCCGCCTTCAGACTTTCACCGCCATCTTCTTCTTCCTCTACTCGTGTCTCTTTCAGTTCAGTTAAATCACCTTTCTCAAACAATGTCAATTCCCTCAAACTCAATTGGTCTAGTAGTATTTCCGCTCCAATTCTTAACCAAAACCATTCCATGGTTACTACTTCTCCTCGCTCTCTCACTATCGTATCCGCTAAAGGCTACAAATTGAAAACCCACAAGGCATCAGCAAAGCGATTTAGGGTTACCGGTGCTGGAAAAATCGTGCGTAGGAGAGCAGGAAAGCAACATTTGCTCTACAAAAAGAATAAGAAGAGGAAATTGAGACTCTCCAAAATGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCGTATCTGAAAGTAAACAGAAAAGCTACGTAA

Protein sequence

>Msa1337950

MALASATATVSSFAAFRLSPPSSSSSTRVSFSSVKSPFSNNVNSLKLNWSSSISAPILNQNHSMVTTSPRSLTIVSAKGYKLKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRKAT*