AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001420 MtrunA17_Chr3g0145711 98.419 253 1 1 1 253 1 250 1.07e-180 506
Msa0001420 MtrunA17_Chr8g0376561 29.381 194 112 6 79 256 52 236 3.32e-13 69.3
Msa0001420 MtrunA17_Chr7g0233361 29.231 195 97 8 79 252 87 261 8.69e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001420 AT3G48730.1 77.734 256 48 4 1 253 5 254 1.79e-138 399
Msa0001420 AT5G63570.1 80.169 237 42 2 17 253 25 256 2.09e-135 391
Msa0001420 AT5G63570.2 87.047 193 25 0 61 253 1 193 1.96e-123 358
Msa0001420 AT5G46180.1 27.027 185 115 5 79 252 59 234 1.73e-12 67.8

Find 159 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTTGCTAAGTTCTTC+TGG 0.125787 1_1:+3143746 Msa0001420:three_prime_UTR
TCTTGGGGTCCTGCAATTAT+TGG 0.214742 1_1:+3142710 Msa0001420:CDS
ATTAGATCTATGTATTATTA+TGG 0.232859 1_1:+3143965 Msa0001420:three_prime_UTR
CCGAACTCGTTCTTTGACTA+TGG 0.262819 1_1:+3142388 Msa0001420:CDS
TGGAGGTAGGAGAGATATTA+TGG 0.268158 1_1:+3143447 Msa0001420:three_prime_UTR
TTTGACGGAATCAATGATAA+TGG 0.275446 1_1:-3142636 None:intergenic
CATTGACTATGTTGGTTCTT+GGG 0.275476 1_1:+3142694 Msa0001420:CDS
CGAACCTGTTGTGGAAATTC+CGG 0.279940 1_1:+3143229 Msa0001420:CDS
GTTTCATTGGTGGCAGCTTT+AGG 0.281598 1_1:-3143125 None:intergenic
CTGCTGCTGAGAAGGTCTTT+AGG 0.282740 1_1:+3143866 Msa0001420:three_prime_UTR
TGCTGCTGAGAAGGTCTTTA+GGG 0.286640 1_1:+3143867 Msa0001420:three_prime_UTR
CTTGATGATCTTCTCTTTGC+CGG 0.295779 1_1:-3143009 None:intergenic
CGCAAGGAACTAAGAAAATC+AGG 0.299535 1_1:-3143268 None:intergenic
ATGGCTGCTTCGGGTATTGC+AGG 0.309438 1_1:+3142314 Msa0001420:CDS
ATATGTGGTGGGCATATAAA+TGG 0.309935 1_1:+3143655 Msa0001420:three_prime_UTR
TTCCCCAGAGTTGTTATATC+AGG 0.310573 1_1:-3143391 None:intergenic
ACATTGACTATGTTGGTTCT+TGG 0.314847 1_1:+3142693 Msa0001420:CDS
CAAGTTTGCTAAGTTCTTCT+GGG 0.335783 1_1:+3143747 Msa0001420:three_prime_UTR
AGAAACTCTGAAGCGTATTA+AGG 0.338134 1_1:+3143546 Msa0001420:three_prime_UTR
GTTAGCAGAAGGTGTCTATT+TGG 0.340874 1_1:+3143774 Msa0001420:three_prime_UTR
GAATACTTGGACAAAATTAC+AGG 0.342820 1_1:+3143583 Msa0001420:three_prime_UTR
ATGGTCAGATTTGTCAATTC+CGG 0.345817 1_1:+3142942 Msa0001420:CDS
GGCATATAAATGGGATGTTT+GGG 0.350134 1_1:+3143665 Msa0001420:three_prime_UTR
GGGCATATAAATGGGATGTT+TGG 0.352503 1_1:+3143664 Msa0001420:three_prime_UTR
GCACCTTCACAGTTTGAGGC+TGG 0.354758 1_1:+3143796 Msa0001420:three_prime_UTR
TCATTCTGAAATGGCTGCTT+CGG 0.355637 1_1:+3142304 Msa0001420:exon
TCCAAGTATTCATAAGTTCC+TGG 0.359322 1_1:-3143571 None:intergenic
TTAGGAACACCAGGGGAATC+AGG 0.388149 1_1:-3143107 None:intergenic
TTTGGCACCTTCACAGTTTG+AGG 0.388856 1_1:+3143792 Msa0001420:three_prime_UTR
GGCTGTAAGGGTTTCATTGG+TGG 0.391375 1_1:-3143135 None:intergenic
GAACTAAGAAAATCAGGTTT+AGG 0.397600 1_1:-3143262 None:intergenic
TACGGCTATCTCTCCTTTGT+TGG 0.403214 1_1:-3143198 None:intergenic
CATTCTGAAATGGCTGCTTC+GGG 0.408622 1_1:+3142305 Msa0001420:exon
TATTGGTCACGCTGATGATC+AGG 0.409676 1_1:+3142727 Msa0001420:CDS
TTGACGGAATCAATGATAAT+GGG 0.415140 1_1:-3142635 None:intergenic
TGCTGTTCCCAGCATTGAAA+TGG 0.417543 1_1:+3142923 Msa0001420:CDS
CCAGAAGAACTTAGCAAACT+TGG 0.420091 1_1:-3143746 None:intergenic
TTTCTTGTTAAGGCAGGTAG+TGG 0.428022 1_1:+3143065 Msa0001420:CDS
ATGAAGAAAGGAACCAGCTT+TGG 0.429438 1_1:+3142855 Msa0001420:CDS
GACGTTGAGTGGGAATCCTT+TGG 0.430505 1_1:+3143507 Msa0001420:three_prime_UTR
CACCTTCACAGTTTGAGGCT+GGG 0.433643 1_1:+3143797 Msa0001420:three_prime_UTR
TCTTATCTATCATTCTGAAA+TGG 0.436545 1_1:+3142295 Msa0001420:exon
CTACCTGCCTTAACAAGAAA+AGG 0.436782 1_1:-3143062 None:intergenic
GGTTTGCCAGTAGGTGCATA+TGG 0.445263 1_1:+3143427 Msa0001420:three_prime_UTR
ACAACTCTGGGGAAGATCAT+TGG 0.450763 1_1:+3143400 Msa0001420:three_prime_UTR
CCACATGCGAGCACCTTTGA+CGG 0.452870 1_1:-3142651 None:intergenic
ACTGGATTCCGTTTGTCGTA+TGG 0.457113 1_1:+3143340 Msa0001420:exon
TCAGCGTGACCAATAATTGC+AGG 0.459493 1_1:-3142719 None:intergenic
ATTGACTATGTTGGTTCTTG+GGG 0.459541 1_1:+3142695 Msa0001420:CDS
TGAGGCTGGGTTCACCAGCT+TGG 0.460390 1_1:+3143810 Msa0001420:three_prime_UTR
AAATCTGACCATTTCAATGC+TGG 0.463786 1_1:-3142931 None:intergenic
CGCCTTGCCCGTGCTTATAC+CGG 0.463976 1_1:+3142990 Msa0001420:CDS
AACTCCTGATATAACAACTC+TGG 0.465327 1_1:+3143387 Msa0001420:three_prime_UTR
CAGGGGAATCAGGAAGTCCT+AGG 0.466845 1_1:-3143097 None:intergenic
TTTGATTAGGAATTGATGCC+TGG 0.467656 1_1:+3142566 Msa0001420:intron
ATTATCATTGATTCCGTCAA+AGG 0.468261 1_1:+3142638 Msa0001420:CDS
ACTCCTGATATAACAACTCT+GGG 0.468947 1_1:+3143388 Msa0001420:three_prime_UTR
ATGGAGACCGTGGCTCCGGC+TGG 0.468994 1_1:+3143466 Msa0001420:three_prime_UTR
AGAGAAGATCATCAAGTTTG+AGG 0.471292 1_1:+3143016 Msa0001420:CDS
GAAACCGGAATTTCCACAAC+AGG 0.472829 1_1:-3143233 None:intergenic
ATTACAGGTGAGCTTGTTCA+AGG 0.477356 1_1:+3143598 Msa0001420:three_prime_UTR
AAGACAAGGTGCACCAAAGC+TGG 0.477394 1_1:-3142868 None:intergenic
GAGAAGATCATCAAGTTTGA+GGG 0.481387 1_1:+3143017 Msa0001420:CDS
GACCATTGCTGCTGCTGAGA+AGG 0.485730 1_1:+3143858 Msa0001420:three_prime_UTR
CTCTTTGCCGGTATAAGCAC+GGG 0.486208 1_1:-3142997 None:intergenic
TTCGGTGCTGGGCTTCTGGT+CGG 0.486793 1_1:-3142420 None:intergenic
GTTCAAGGCATTGTTGAAGC+TGG 0.489925 1_1:+3143613 Msa0001420:three_prime_UTR
AACCAACATAGTCAATGTAT+TGG 0.491453 1_1:-3142688 None:intergenic
ACTGATTTGAAAGCACGAAC+AGG 0.495762 1_1:-3142602 None:intergenic
AAGAAGAGAAGCAATTGAGA+AGG 0.496897 1_1:-3142343 None:intergenic
GTGTTTGATGAAGTTATGAC+TGG 0.497336 1_1:+3143322 Msa0001420:exon
GCCAGGAACTTATGAATACT+TGG 0.499909 1_1:+3143570 Msa0001420:three_prime_UTR
AGGAAATAACATGAAGATGC+AGG 0.500720 1_1:-3144120 None:intergenic
GCTGGACCTATGTACCAGGC+TGG 0.502027 1_1:+3143484 Msa0001420:three_prime_UTR
AACAGCAGCAAAGTCATTGA+AGG 0.503512 1_1:-3143159 None:intergenic
CCATAGTCAAAGAACGAGTT+CGG 0.503585 1_1:-3142388 None:intergenic
AATCCTTTGGCAATGACTGC+AGG 0.505080 1_1:+3143520 Msa0001420:three_prime_UTR
AGAAGAGAAGCAATTGAGAA+GGG 0.505692 1_1:-3142342 None:intergenic
TTCCGGCACAGAAGCATGCA+TGG 0.507223 1_1:+3142959 Msa0001420:CDS
GTTCGTGCTTTCAAATCAGT+TGG 0.507920 1_1:+3142605 Msa0001420:CDS
GAGCACCTCCATACGACAAA+CGG 0.508625 1_1:-3143348 None:intergenic
GTTGAAGCTGGTAAGAAGGC+AGG 0.509704 1_1:+3143625 Msa0001420:three_prime_UTR
AACCAATACATTGACTATGT+TGG 0.510475 1_1:+3142686 Msa0001420:CDS
ACAGGAGAGTTCACACCTCC+AGG 0.510938 1_1:-3142584 None:intergenic
AGTCTTCCTCGAACCTGTTG+TGG 0.512015 1_1:+3143220 Msa0001420:CDS
TATTATGGAGACCGTGGCTC+CGG 0.513114 1_1:+3143462 Msa0001420:three_prime_UTR
AACGTCCCAGCCTGGTACAT+AGG 0.518158 1_1:-3143490 None:intergenic
GCCTGGTACATAGGTCCAGC+CGG 0.518203 1_1:-3143481 None:intergenic
TTCTGGGGTATGTTAGCAGA+AGG 0.519712 1_1:+3143763 Msa0001420:three_prime_UTR
GACCTTCTCAGCAGCAGCAA+TGG 0.522852 1_1:-3143860 None:intergenic
CTAGGACTTCCTGATTCCCC+TGG 0.524552 1_1:+3143098 Msa0001420:CDS
GGTGCTGGGCTTCTGGTCGG+TGG 0.527286 1_1:-3142417 None:intergenic
TGAAAACACTCTAGCTGAGA+TGG 0.530589 1_1:+3142893 Msa0001420:CDS
CTACCTCCATATGCACCTAC+TGG 0.530999 1_1:-3143433 None:intergenic
CGTGCTTTCAAATCAGTTGG+TGG 0.531486 1_1:+3142608 Msa0001420:CDS
CCGTCAAAGGTGCTCGCATG+TGG 0.532480 1_1:+3142651 Msa0001420:CDS
TACCAGGCTGGGACGTTGAG+TGG 0.532692 1_1:+3143496 Msa0001420:three_prime_UTR
GAGAAGGGCATTGTTCTCCT+TGG 0.539822 1_1:-3143299 None:intergenic
CATTGTTGAAGCTGGTAAGA+AGG 0.540418 1_1:+3143621 Msa0001420:three_prime_UTR
AGGTTTAGGAGTAATGAAAC+CGG 0.540434 1_1:-3143248 None:intergenic
GGAGGTGCTCAACAATACTT+TGG 0.540803 1_1:+3143361 Msa0001420:three_prime_UTR
CTGAAGCGTATTAAGGAGCC+AGG 0.542721 1_1:+3143553 Msa0001420:three_prime_UTR
CTGGACCTATGTACCAGGCT+GGG 0.542962 1_1:+3143485 Msa0001420:three_prime_UTR
TGCCGGTATAAGCACGGGCA+AGG 0.545023 1_1:-3142992 None:intergenic
CTTCCTGTATCTAGTCTCAT+CGG 0.545827 1_1:+3144019 Msa0001420:three_prime_UTR
ATCAGAAGTATGTGCCAAGC+TGG 0.549286 1_1:-3143824 None:intergenic
TCCGGCTGGACCTATGTACC+AGG 0.550164 1_1:+3143480 Msa0001420:three_prime_UTR
AATCTGACCATTTCAATGCT+GGG 0.551104 1_1:-3142930 None:intergenic
GCTCGCATGTGGGACATTGA+TGG 0.552562 1_1:+3142662 Msa0001420:CDS
GGTAGTGGAGTTGCCACCCT+AGG 0.552592 1_1:+3143080 Msa0001420:CDS
GAATTTCCACAACAGGTTCG+AGG 0.553304 1_1:-3143226 None:intergenic
TCCCACTCAACGTCCCAGCC+TGG 0.554590 1_1:-3143498 None:intergenic
ACCCATGCATGCTTCTGTGC+CGG 0.554652 1_1:-3142961 None:intergenic
CTTGCTGAGACAATGAAGAA+AGG 0.555611 1_1:+3142843 Msa0001420:CDS
TCTCTTTGCCGGTATAAGCA+CGG 0.568722 1_1:-3142998 None:intergenic
CATAGGTCCAGCCGGAGCCA+CGG 0.570397 1_1:-3143473 None:intergenic
GTGGCAGCTTTAGGAACACC+AGG 0.571077 1_1:-3143116 None:intergenic
TGGCTGCTTCGGGTATTGCA+GGG 0.571356 1_1:+3142315 Msa0001420:CDS
ACACCGATGAGACTAGATAC+AGG 0.575451 1_1:-3144022 None:intergenic
ACAGCAGCAAAGTCATTGAA+GGG 0.578728 1_1:-3143158 None:intergenic
GCAGGGCATGCAATATGTGG+TGG 0.581592 1_1:+3143643 Msa0001420:three_prime_UTR
TATGTGGTGGGCATATAAAT+GGG 0.582602 1_1:+3143656 Msa0001420:three_prime_UTR
AAGTTTGCTAAGTTCTTCTG+GGG 0.584115 1_1:+3143748 Msa0001420:three_prime_UTR
TAACTTCATCAAACACGAGA+AGG 0.585499 1_1:-3143315 None:intergenic
TTGAAGCTGGTAAGAAGGCA+GGG 0.585619 1_1:+3143626 Msa0001420:three_prime_UTR
AGGGGAATCAGGAAGTCCTA+GGG 0.587377 1_1:-3143096 None:intergenic
GGATTCCGTTTGTCGTATGG+AGG 0.588634 1_1:+3143343 Msa0001420:three_prime_UTR
AAGTTTGAGGGATGTTATCA+CGG 0.591307 1_1:+3143029 Msa0001420:CDS
AAGGCAGGGCATGCAATATG+TGG 0.593656 1_1:+3143640 Msa0001420:three_prime_UTR
CTTCATTGTCTCAGCAAGAG+CGG 0.594962 1_1:-3142838 None:intergenic
ATGCCTGCAGTCATTGCCAA+AGG 0.596171 1_1:-3143523 None:intergenic
ACTCTGGGGAAGATCATTGG+AGG 0.600178 1_1:+3143403 Msa0001420:three_prime_UTR
CAGTAGGTGCATATGGAGGT+AGG 0.601307 1_1:+3143434 Msa0001420:three_prime_UTR
AGAAGCTTTCGCAGCTGCAA+AGG 0.604865 1_1:+3142466 Msa0001420:CDS
CAGGGCATGCAATATGTGGT+GGG 0.605835 1_1:+3143644 Msa0001420:three_prime_UTR
ACCAGGCTGGGACGTTGAGT+GGG 0.609650 1_1:+3143497 Msa0001420:three_prime_UTR
CTGGGGAAGATCATTGGAGG+GGG 0.612965 1_1:+3143406 Msa0001420:three_prime_UTR
AACTTCATCAAACACGAGAA+GGG 0.614126 1_1:-3143314 None:intergenic
TCCGGCACAGAAGCATGCAT+GGG 0.618306 1_1:+3142960 Msa0001420:CDS
AACAGGTTCGAGGAAGACTA+CGG 0.621214 1_1:-3143216 None:intergenic
CGTCAAAGGTGCTCGCATGT+GGG 0.625959 1_1:+3142652 Msa0001420:CDS
AACCCAGCCTCAAACTGTGA+AGG 0.634803 1_1:-3143799 None:intergenic
AAGATCTTTGAAGCCAACAA+AGG 0.638698 1_1:+3143185 Msa0001420:CDS
GCATCTGTGAAATTGTACAC+AGG 0.641026 1_1:-3143706 None:intergenic
GGAATCAGGAAGTCCTAGGG+TGG 0.643441 1_1:-3143093 None:intergenic
CGGTATAAGCACGGGCAAGG+CGG 0.653099 1_1:-3142989 None:intergenic
CAGCAGCAAAGTCATTGAAG+GGG 0.654908 1_1:-3143157 None:intergenic
GAGAGATATTATGGAGACCG+TGG 0.661183 1_1:+3143456 Msa0001420:three_prime_UTR
TCTGGGGAAGATCATTGGAG+GGG 0.662523 1_1:+3143405 Msa0001420:three_prime_UTR
AGCAGCAAAGTCATTGAAGG+GGG 0.664856 1_1:-3143156 None:intergenic
CTCTGGGGAAGATCATTGGA+GGG 0.675119 1_1:+3143404 Msa0001420:three_prime_UTR
TAACAAGAAAAGGATCAGCA+TGG 0.678181 1_1:-3143052 None:intergenic
TTCCTTGCGCAAAATCACCA+AGG 0.686509 1_1:+3143282 Msa0001420:CDS
TTGCCAGTAGGTGCATATGG+AGG 0.697062 1_1:+3143430 Msa0001420:three_prime_UTR
GGCAGCTTTAGGAACACCAG+GGG 0.703847 1_1:-3143114 None:intergenic
TGGCAGCTTTAGGAACACCA+GGG 0.708271 1_1:-3143115 None:intergenic
AGGCATTATAAGTCGAACAA+CGG 0.716492 1_1:-3144100 None:intergenic
GATTAGGAATTGATGCCTGG+AGG 0.717601 1_1:+3142569 Msa0001420:intron
CTCCTGATATAACAACTCTG+GGG 0.744293 1_1:+3143389 Msa0001420:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACATAAAAGTTTGA+AGG - chr1_1:3142807-3142826 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG + chr1_1:3142809-3142828 Msa0001420:intron 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG + chr1_1:3143938-3143957 Msa0001420:three_prime_UTR 15.0%
!! ATTAGATCTATGTATTATTA+TGG + chr1_1:3143965-3143984 Msa0001420:three_prime_UTR 15.0%
!! AATTAAACATAAAAGTTTGA+AGG - chr1_1:3142807-3142826 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG + chr1_1:3142809-3142828 Msa0001420:intron 15.0%
!!! ATTGATTTTTATAGTTTTGT+AGG + chr1_1:3143938-3143957 Msa0001420:three_prime_UTR 15.0%
!! ATTAGATCTATGTATTATTA+TGG + chr1_1:3143965-3143984 Msa0001420:three_prime_UTR 15.0%
!!! ATGTAATAATCGATTTGATT+AGG + chr1_1:3142553-3142572 Msa0001420:intron 20.0%
!!! ATGTAATAATCGATTTGATT+AGG + chr1_1:3142553-3142572 Msa0001420:intron 20.0%
!! TCTTATCTATCATTCTGAAA+TGG + chr1_1:3142295-3142314 Msa0001420:exon 25.0%
! AATATATGAGAGAATTGAAG+AGG - chr1_1:3142772-3142791 None:intergenic 25.0%
!! TCTTATCTATCATTCTGAAA+TGG + chr1_1:3142295-3142314 Msa0001420:exon 25.0%
! AATATATGAGAGAATTGAAG+AGG - chr1_1:3142772-3142791 None:intergenic 25.0%
TTGACGGAATCAATGATAAT+GGG - chr1_1:3142638-3142657 None:intergenic 30.0%
TTTGACGGAATCAATGATAA+TGG - chr1_1:3142639-3142658 None:intergenic 30.0%
!! ATTATCATTGATTCCGTCAA+AGG + chr1_1:3142638-3142657 Msa0001420:CDS 30.0%
! AACCAATACATTGACTATGT+TGG + chr1_1:3142686-3142705 Msa0001420:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG - chr1_1:3142691-3142710 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr1_1:3143265-3143284 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr1_1:3143583-3143602 Msa0001420:three_prime_UTR 30.0%
TTGACGGAATCAATGATAAT+GGG - chr1_1:3142638-3142657 None:intergenic 30.0%
TTTGACGGAATCAATGATAA+TGG - chr1_1:3142639-3142658 None:intergenic 30.0%
!! ATTATCATTGATTCCGTCAA+AGG + chr1_1:3142638-3142657 Msa0001420:CDS 30.0%
! AACCAATACATTGACTATGT+TGG + chr1_1:3142686-3142705 Msa0001420:CDS 30.0%
AACCAACATAGTCAATGTAT+TGG - chr1_1:3142691-3142710 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr1_1:3143265-3143284 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr1_1:3143583-3143602 Msa0001420:three_prime_UTR 30.0%
AGAAGAGAAGCAATTGAGAA+GGG - chr1_1:3142345-3142364 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG - chr1_1:3142346-3142365 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG - chr1_1:3142441-3142460 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG + chr1_1:3142566-3142585 Msa0001420:intron 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr1_1:3142693-3142712 Msa0001420:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr1_1:3142694-3142713 Msa0001420:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr1_1:3142695-3142714 Msa0001420:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr1_1:3142885-3142904 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG - chr1_1:3142933-3142952 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG - chr1_1:3142934-3142953 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr1_1:3142942-3142961 Msa0001420:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr1_1:3143016-3143035 Msa0001420:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr1_1:3143017-3143036 Msa0001420:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr1_1:3143029-3143048 Msa0001420:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr1_1:3143055-3143074 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr1_1:3143055-3143074 Msa0001420:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr1_1:3143185-3143204 Msa0001420:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr1_1:3143251-3143270 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG - chr1_1:3143317-3143336 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr1_1:3143318-3143337 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr1_1:3143322-3143341 Msa0001420:exon 35.0%
AACTCCTGATATAACAACTC+TGG + chr1_1:3143387-3143406 Msa0001420:three_prime_UTR 35.0%
ACTCCTGATATAACAACTCT+GGG + chr1_1:3143388-3143407 Msa0001420:three_prime_UTR 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr1_1:3143546-3143565 Msa0001420:three_prime_UTR 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr1_1:3143574-3143593 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr1_1:3143655-3143674 Msa0001420:three_prime_UTR 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr1_1:3143656-3143675 Msa0001420:three_prime_UTR 35.0%
GGCATATAAATGGGATGTTT+GGG + chr1_1:3143665-3143684 Msa0001420:three_prime_UTR 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr1_1:3143682-3143701 Msa0001420:three_prime_UTR 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr1_1:3143747-3143766 Msa0001420:three_prime_UTR 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr1_1:3143748-3143767 Msa0001420:three_prime_UTR 35.0%
AGGCATTATAAGTCGAACAA+CGG - chr1_1:3144103-3144122 None:intergenic 35.0%
AGAAGAGAAGCAATTGAGAA+GGG - chr1_1:3142345-3142364 None:intergenic 35.0%
AAGAAGAGAAGCAATTGAGA+AGG - chr1_1:3142346-3142365 None:intergenic 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG - chr1_1:3142441-3142460 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG + chr1_1:3142566-3142585 Msa0001420:intron 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr1_1:3142693-3142712 Msa0001420:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr1_1:3142694-3142713 Msa0001420:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr1_1:3142695-3142714 Msa0001420:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr1_1:3142885-3142904 None:intergenic 35.0%
AATCTGACCATTTCAATGCT+GGG - chr1_1:3142933-3142952 None:intergenic 35.0%
AAATCTGACCATTTCAATGC+TGG - chr1_1:3142934-3142953 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr1_1:3142942-3142961 Msa0001420:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr1_1:3143016-3143035 Msa0001420:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr1_1:3143017-3143036 Msa0001420:CDS 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr1_1:3143029-3143048 Msa0001420:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr1_1:3143055-3143074 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr1_1:3143055-3143074 Msa0001420:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr1_1:3143185-3143204 Msa0001420:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr1_1:3143251-3143270 None:intergenic 35.0%
AACTTCATCAAACACGAGAA+GGG - chr1_1:3143317-3143336 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr1_1:3143318-3143337 None:intergenic 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr1_1:3143322-3143341 Msa0001420:exon 35.0%
AACTCCTGATATAACAACTC+TGG + chr1_1:3143387-3143406 Msa0001420:three_prime_UTR 35.0%
ACTCCTGATATAACAACTCT+GGG + chr1_1:3143388-3143407 Msa0001420:three_prime_UTR 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr1_1:3143546-3143565 Msa0001420:three_prime_UTR 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr1_1:3143574-3143593 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr1_1:3143655-3143674 Msa0001420:three_prime_UTR 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr1_1:3143656-3143675 Msa0001420:three_prime_UTR 35.0%
GGCATATAAATGGGATGTTT+GGG + chr1_1:3143665-3143684 Msa0001420:three_prime_UTR 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr1_1:3143682-3143701 Msa0001420:three_prime_UTR 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr1_1:3143747-3143766 Msa0001420:three_prime_UTR 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr1_1:3143748-3143767 Msa0001420:three_prime_UTR 35.0%
AGGCATTATAAGTCGAACAA+CGG - chr1_1:3144103-3144122 None:intergenic 35.0%
!! TCATTCTGAAATGGCTGCTT+CGG + chr1_1:3142304-3142323 Msa0001420:exon 40.0%
CCATAGTCAAAGAACGAGTT+CGG - chr1_1:3142391-3142410 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr1_1:3142605-3142624 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr1_1:3142605-3142624 Msa0001420:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr1_1:3142843-3142862 Msa0001420:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr1_1:3142855-3142874 Msa0001420:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr1_1:3142893-3142912 Msa0001420:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr1_1:3143012-3143031 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr1_1:3143059-3143078 Msa0001420:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr1_1:3143065-3143084 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr1_1:3143065-3143084 Msa0001420:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr1_1:3143161-3143180 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr1_1:3143162-3143181 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr1_1:3143271-3143290 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr1_1:3143389-3143408 Msa0001420:three_prime_UTR 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr1_1:3143394-3143413 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr1_1:3143447-3143466 Msa0001420:three_prime_UTR 40.0%
GCCAGGAACTTATGAATACT+TGG + chr1_1:3143570-3143589 Msa0001420:three_prime_UTR 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr1_1:3143598-3143617 Msa0001420:three_prime_UTR 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr1_1:3143621-3143640 Msa0001420:three_prime_UTR 40.0%
GGGCATATAAATGGGATGTT+TGG + chr1_1:3143664-3143683 Msa0001420:three_prime_UTR 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr1_1:3143709-3143728 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr1_1:3143749-3143768 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr1_1:3143746-3143765 Msa0001420:three_prime_UTR 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr1_1:3143774-3143793 Msa0001420:three_prime_UTR 40.0%
CTTCCTGTATCTAGTCTCAT+CGG + chr1_1:3144019-3144038 Msa0001420:three_prime_UTR 40.0%
!! TCATTCTGAAATGGCTGCTT+CGG + chr1_1:3142304-3142323 Msa0001420:exon 40.0%
CCATAGTCAAAGAACGAGTT+CGG - chr1_1:3142391-3142410 None:intergenic 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr1_1:3142605-3142624 None:intergenic 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr1_1:3142605-3142624 Msa0001420:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr1_1:3142843-3142862 Msa0001420:CDS 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr1_1:3142855-3142874 Msa0001420:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr1_1:3142893-3142912 Msa0001420:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr1_1:3143012-3143031 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr1_1:3143059-3143078 Msa0001420:CDS 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr1_1:3143065-3143084 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr1_1:3143065-3143084 Msa0001420:CDS 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr1_1:3143161-3143180 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr1_1:3143162-3143181 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr1_1:3143271-3143290 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr1_1:3143389-3143408 Msa0001420:three_prime_UTR 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr1_1:3143394-3143413 None:intergenic 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr1_1:3143447-3143466 Msa0001420:three_prime_UTR 40.0%
GCCAGGAACTTATGAATACT+TGG + chr1_1:3143570-3143589 Msa0001420:three_prime_UTR 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr1_1:3143598-3143617 Msa0001420:three_prime_UTR 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr1_1:3143621-3143640 Msa0001420:three_prime_UTR 40.0%
GGGCATATAAATGGGATGTT+TGG + chr1_1:3143664-3143683 Msa0001420:three_prime_UTR 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr1_1:3143709-3143728 None:intergenic 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr1_1:3143749-3143768 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr1_1:3143746-3143765 Msa0001420:three_prime_UTR 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr1_1:3143774-3143793 Msa0001420:three_prime_UTR 40.0%
CTTCCTGTATCTAGTCTCAT+CGG + chr1_1:3144019-3144038 Msa0001420:three_prime_UTR 40.0%
!! CATTCTGAAATGGCTGCTTC+GGG + chr1_1:3142305-3142324 Msa0001420:exon 45.0%
CCGAACTCGTTCTTTGACTA+TGG + chr1_1:3142388-3142407 Msa0001420:CDS 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG - chr1_1:3142434-3142453 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG - chr1_1:3142435-3142454 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG + chr1_1:3142569-3142588 Msa0001420:intron 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr1_1:3142608-3142627 Msa0001420:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr1_1:3142710-3142729 Msa0001420:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr1_1:3142722-3142741 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr1_1:3142727-3142746 Msa0001420:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr1_1:3142841-3142860 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr1_1:3142923-3142942 Msa0001420:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr1_1:3143001-3143020 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr1_1:3143128-3143147 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr1_1:3143159-3143178 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr1_1:3143160-3143179 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr1_1:3143201-3143220 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG - chr1_1:3143219-3143238 None:intergenic 45.0%
GAATTTCCACAACAGGTTCG+AGG - chr1_1:3143229-3143248 None:intergenic 45.0%
CGAACCTGTTGTGGAAATTC+CGG + chr1_1:3143229-3143248 Msa0001420:CDS 45.0%
GAAACCGGAATTTCCACAAC+AGG - chr1_1:3143236-3143255 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr1_1:3143282-3143301 Msa0001420:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr1_1:3143340-3143359 Msa0001420:exon 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr1_1:3143361-3143380 Msa0001420:three_prime_UTR 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr1_1:3143400-3143419 Msa0001420:three_prime_UTR 45.0%
GAGAGATATTATGGAGACCG+TGG + chr1_1:3143456-3143475 Msa0001420:three_prime_UTR 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr1_1:3143520-3143539 Msa0001420:three_prime_UTR 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr1_1:3143613-3143632 Msa0001420:three_prime_UTR 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr1_1:3143626-3143645 Msa0001420:three_prime_UTR 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr1_1:3143763-3143782 Msa0001420:three_prime_UTR 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr1_1:3143792-3143811 Msa0001420:three_prime_UTR 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr1_1:3143827-3143846 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr1_1:3143867-3143886 Msa0001420:three_prime_UTR 45.0%
ACACCGATGAGACTAGATAC+AGG - chr1_1:3144025-3144044 None:intergenic 45.0%
!! CATTCTGAAATGGCTGCTTC+GGG + chr1_1:3142305-3142324 Msa0001420:exon 45.0%
CCGAACTCGTTCTTTGACTA+TGG + chr1_1:3142388-3142407 Msa0001420:CDS 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG - chr1_1:3142434-3142453 None:intergenic 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG - chr1_1:3142435-3142454 None:intergenic 45.0%
GATTAGGAATTGATGCCTGG+AGG + chr1_1:3142569-3142588 Msa0001420:intron 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr1_1:3142608-3142627 Msa0001420:CDS 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr1_1:3142710-3142729 Msa0001420:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr1_1:3142722-3142741 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr1_1:3142727-3142746 Msa0001420:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr1_1:3142841-3142860 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr1_1:3142923-3142942 Msa0001420:CDS 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr1_1:3143001-3143020 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr1_1:3143128-3143147 None:intergenic 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr1_1:3143159-3143178 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr1_1:3143160-3143179 None:intergenic 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr1_1:3143201-3143220 None:intergenic 45.0%
AACAGGTTCGAGGAAGACTA+CGG - chr1_1:3143219-3143238 None:intergenic 45.0%
GAATTTCCACAACAGGTTCG+AGG - chr1_1:3143229-3143248 None:intergenic 45.0%
CGAACCTGTTGTGGAAATTC+CGG + chr1_1:3143229-3143248 Msa0001420:CDS 45.0%
GAAACCGGAATTTCCACAAC+AGG - chr1_1:3143236-3143255 None:intergenic 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr1_1:3143282-3143301 Msa0001420:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr1_1:3143340-3143359 Msa0001420:exon 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr1_1:3143361-3143380 Msa0001420:three_prime_UTR 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr1_1:3143400-3143419 Msa0001420:three_prime_UTR 45.0%
GAGAGATATTATGGAGACCG+TGG + chr1_1:3143456-3143475 Msa0001420:three_prime_UTR 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr1_1:3143520-3143539 Msa0001420:three_prime_UTR 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr1_1:3143613-3143632 Msa0001420:three_prime_UTR 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr1_1:3143626-3143645 Msa0001420:three_prime_UTR 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr1_1:3143763-3143782 Msa0001420:three_prime_UTR 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr1_1:3143792-3143811 Msa0001420:three_prime_UTR 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr1_1:3143827-3143846 None:intergenic 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr1_1:3143867-3143886 Msa0001420:three_prime_UTR 45.0%
ACACCGATGAGACTAGATAC+AGG - chr1_1:3144025-3144044 None:intergenic 45.0%
AGAAGCTTTCGCAGCTGCAA+AGG + chr1_1:3142466-3142485 Msa0001420:CDS 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr1_1:3142871-3142890 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr1_1:3143000-3143019 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr1_1:3143099-3143118 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr1_1:3143110-3143129 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr1_1:3143118-3143137 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr1_1:3143138-3143157 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr1_1:3143150-3143169 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr1_1:3143151-3143170 None:intergenic 50.0%
AGTCTTCCTCGAACCTGTTG+TGG + chr1_1:3143220-3143239 Msa0001420:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr1_1:3143287-3143306 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr1_1:3143302-3143321 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr1_1:3143343-3143362 Msa0001420:three_prime_UTR 50.0%
GAGCACCTCCATACGACAAA+CGG - chr1_1:3143351-3143370 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr1_1:3143403-3143422 Msa0001420:three_prime_UTR 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr1_1:3143404-3143423 Msa0001420:three_prime_UTR 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr1_1:3143405-3143424 Msa0001420:three_prime_UTR 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr1_1:3143427-3143446 Msa0001420:three_prime_UTR 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr1_1:3143430-3143449 Msa0001420:three_prime_UTR 50.0%
CTACCTCCATATGCACCTAC+TGG - chr1_1:3143436-3143455 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr1_1:3143434-3143453 Msa0001420:three_prime_UTR 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr1_1:3143462-3143481 Msa0001420:three_prime_UTR 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr1_1:3143507-3143526 Msa0001420:three_prime_UTR 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr1_1:3143526-3143545 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr1_1:3143553-3143572 Msa0001420:three_prime_UTR 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr1_1:3143625-3143644 Msa0001420:three_prime_UTR 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr1_1:3143640-3143659 Msa0001420:three_prime_UTR 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr1_1:3143644-3143663 Msa0001420:three_prime_UTR 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr1_1:3143797-3143816 Msa0001420:three_prime_UTR 50.0%
AACCCAGCCTCAAACTGTGA+AGG - chr1_1:3143802-3143821 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr1_1:3143866-3143885 Msa0001420:three_prime_UTR 50.0%
AGAAGCTTTCGCAGCTGCAA+AGG + chr1_1:3142466-3142485 Msa0001420:CDS 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr1_1:3142871-3142890 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr1_1:3143000-3143019 None:intergenic 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr1_1:3143099-3143118 None:intergenic 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr1_1:3143110-3143129 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr1_1:3143118-3143137 None:intergenic 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr1_1:3143138-3143157 None:intergenic 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr1_1:3143150-3143169 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr1_1:3143151-3143170 None:intergenic 50.0%
AGTCTTCCTCGAACCTGTTG+TGG + chr1_1:3143220-3143239 Msa0001420:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr1_1:3143287-3143306 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr1_1:3143302-3143321 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr1_1:3143343-3143362 Msa0001420:three_prime_UTR 50.0%
GAGCACCTCCATACGACAAA+CGG - chr1_1:3143351-3143370 None:intergenic 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr1_1:3143403-3143422 Msa0001420:three_prime_UTR 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr1_1:3143404-3143423 Msa0001420:three_prime_UTR 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr1_1:3143405-3143424 Msa0001420:three_prime_UTR 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr1_1:3143427-3143446 Msa0001420:three_prime_UTR 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr1_1:3143430-3143449 Msa0001420:three_prime_UTR 50.0%
CTACCTCCATATGCACCTAC+TGG - chr1_1:3143436-3143455 None:intergenic 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr1_1:3143434-3143453 Msa0001420:three_prime_UTR 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr1_1:3143462-3143481 Msa0001420:three_prime_UTR 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr1_1:3143507-3143526 Msa0001420:three_prime_UTR 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr1_1:3143526-3143545 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr1_1:3143553-3143572 Msa0001420:three_prime_UTR 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr1_1:3143625-3143644 Msa0001420:three_prime_UTR 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr1_1:3143640-3143659 Msa0001420:three_prime_UTR 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr1_1:3143644-3143663 Msa0001420:three_prime_UTR 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr1_1:3143797-3143816 Msa0001420:three_prime_UTR 50.0%
AACCCAGCCTCAAACTGTGA+AGG - chr1_1:3143802-3143821 None:intergenic 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr1_1:3143866-3143885 Msa0001420:three_prime_UTR 50.0%
! ATGGCTGCTTCGGGTATTGC+AGG + chr1_1:3142314-3142333 Msa0001420:CDS 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG + chr1_1:3142315-3142334 Msa0001420:CDS 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG - chr1_1:3142427-3142446 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr1_1:3142587-3142606 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr1_1:3142654-3142673 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr1_1:3142652-3142671 Msa0001420:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr1_1:3142662-3142681 Msa0001420:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG + chr1_1:3142959-3142978 Msa0001420:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG + chr1_1:3142960-3142979 Msa0001420:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG - chr1_1:3142964-3142983 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr1_1:3143096-3143115 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr1_1:3143100-3143119 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr1_1:3143098-3143117 Msa0001420:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr1_1:3143117-3143136 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr1_1:3143119-3143138 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr1_1:3143141-3143160 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr1_1:3143406-3143425 Msa0001420:three_prime_UTR 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr1_1:3143418-3143437 Msa0001420:three_prime_UTR 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr1_1:3143485-3143504 Msa0001420:three_prime_UTR 55.0%
AACGTCCCAGCCTGGTACAT+AGG - chr1_1:3143493-3143512 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr1_1:3143643-3143662 Msa0001420:three_prime_UTR 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr1_1:3143796-3143815 Msa0001420:three_prime_UTR 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr1_1:3143858-3143877 Msa0001420:three_prime_UTR 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr1_1:3143863-3143882 None:intergenic 55.0%
! ATGGCTGCTTCGGGTATTGC+AGG + chr1_1:3142314-3142333 Msa0001420:CDS 55.0%
! TGGCTGCTTCGGGTATTGCA+GGG + chr1_1:3142315-3142334 Msa0001420:CDS 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG - chr1_1:3142427-3142446 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr1_1:3142587-3142606 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr1_1:3142654-3142673 None:intergenic 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr1_1:3142652-3142671 Msa0001420:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr1_1:3142662-3142681 Msa0001420:CDS 55.0%
! TTCCGGCACAGAAGCATGCA+TGG + chr1_1:3142959-3142978 Msa0001420:CDS 55.0%
! TCCGGCACAGAAGCATGCAT+GGG + chr1_1:3142960-3142979 Msa0001420:CDS 55.0%
ACCCATGCATGCTTCTGTGC+CGG - chr1_1:3142964-3142983 None:intergenic 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr1_1:3143096-3143115 None:intergenic 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr1_1:3143100-3143119 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr1_1:3143098-3143117 Msa0001420:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr1_1:3143117-3143136 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr1_1:3143119-3143138 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr1_1:3143141-3143160 None:intergenic 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr1_1:3143406-3143425 Msa0001420:three_prime_UTR 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr1_1:3143418-3143437 Msa0001420:three_prime_UTR 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr1_1:3143485-3143504 Msa0001420:three_prime_UTR 55.0%
AACGTCCCAGCCTGGTACAT+AGG - chr1_1:3143493-3143512 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr1_1:3143643-3143662 Msa0001420:three_prime_UTR 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr1_1:3143796-3143815 Msa0001420:three_prime_UTR 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr1_1:3143858-3143877 Msa0001420:three_prime_UTR 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr1_1:3143863-3143882 None:intergenic 55.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG - chr1_1:3142423-3142442 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr1_1:3142651-3142670 Msa0001420:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr1_1:3142992-3143011 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr1_1:3142990-3143009 Msa0001420:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr1_1:3142995-3143014 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr1_1:3143080-3143099 Msa0001420:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr1_1:3143480-3143499 Msa0001420:three_prime_UTR 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr1_1:3143484-3143503 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr1_1:3143484-3143503 Msa0001420:three_prime_UTR 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr1_1:3143496-3143515 Msa0001420:three_prime_UTR 60.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr1_1:3143497-3143516 Msa0001420:three_prime_UTR 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr1_1:3143810-3143829 Msa0001420:three_prime_UTR 60.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG - chr1_1:3142423-3142442 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr1_1:3142651-3142670 Msa0001420:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr1_1:3142992-3143011 None:intergenic 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr1_1:3142990-3143009 Msa0001420:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr1_1:3142995-3143014 None:intergenic 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr1_1:3143080-3143099 Msa0001420:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr1_1:3143480-3143499 Msa0001420:three_prime_UTR 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr1_1:3143484-3143503 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr1_1:3143484-3143503 Msa0001420:three_prime_UTR 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr1_1:3143496-3143515 Msa0001420:three_prime_UTR 60.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr1_1:3143497-3143516 Msa0001420:three_prime_UTR 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr1_1:3143810-3143829 Msa0001420:three_prime_UTR 60.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr1_1:3143476-3143495 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr1_1:3143501-3143520 None:intergenic 65.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr1_1:3143476-3143495 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr1_1:3143501-3143520 None:intergenic 65.0%
! GGTGCTGGGCTTCTGGTCGG+TGG - chr1_1:3142420-3142439 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr1_1:3143466-3143485 Msa0001420:three_prime_UTR 70.0%
! GGTGCTGGGCTTCTGGTCGG+TGG - chr1_1:3142420-3142439 None:intergenic 70.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr1_1:3143466-3143485 Msa0001420:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3142239 3144136 3142239 ID=Msa0001420;Name=Msa0001420
chr1_1 mRNA 3142239 3144136 3142239 ID=Msa0001420-mRNA-1;Parent=Msa0001420;Name=Msa0001420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=75|1|1|1|1|1|3|796|285
chr1_1 exon 3142239 3142487 3142239 ID=Msa0001420-mRNA-1:exon:726;Parent=Msa0001420-mRNA-1
chr1_1 exon 3142575 3142748 3142575 ID=Msa0001420-mRNA-1:exon:727;Parent=Msa0001420-mRNA-1
chr1_1 exon 3142831 3144136 3142831 ID=Msa0001420-mRNA-1:exon:728;Parent=Msa0001420-mRNA-1
chr1_1 five_prime_UTR 3142239 3142313 3142239 ID=Msa0001420-mRNA-1:five_prime_utr;Parent=Msa0001420-mRNA-1
chr1_1 CDS 3142314 3142487 3142314 ID=Msa0001420-mRNA-1:cds;Parent=Msa0001420-mRNA-1
chr1_1 CDS 3142575 3142748 3142575 ID=Msa0001420-mRNA-1:cds;Parent=Msa0001420-mRNA-1
chr1_1 CDS 3142831 3143340 3142831 ID=Msa0001420-mRNA-1:cds;Parent=Msa0001420-mRNA-1
chr1_1 three_prime_UTR 3143341 3144136 3143341 ID=Msa0001420-mRNA-1:three_prime_utr;Parent=Msa0001420-mRNA-1
Gene Sequence

>Msa0001420

ATGGCTGCTTCGGGTATTGCAGGGCTTACCCTTCTCAATTGCTTCTCTTCTTCTTCTTCTTCATCAGCGAGATGCCGAACTCGTTCTTTGACTATGGCTGTTTCCACCGACCAGAAGCCCAGCACCGAAAAACTCACTCTTCGCAAATCTGAAGAAGCTTTCGCAGCTGCAAAGGAATTGATGCCTGGAGGTGTGAACTCTCCTGTTCGTGCTTTCAAATCAGTTGGTGGACAACCCATTATCATTGATTCCGTCAAAGGTGCTCGCATGTGGGACATTGATGGCAACCAATACATTGACTATGTTGGTTCTTGGGGTCCTGCAATTATTGGTCACGCTGATGATCAGGTACTCTCCGCTCTTGCTGAGACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTTCTTGAAAACACTCTAGCTGAGATGGTTATCTCTGCTGTTCCCAGCATTGAAATGGTCAGATTTGTCAATTCCGGCACAGAAGCATGCATGGGTGCACTCCGCCTTGCCCGTGCTTATACCGGCAAAGAGAAGATCATCAAGTTTGAGGGATGTTATCACGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCCTAGGACTTCCTGATTCCCCTGGTGTTCCTAAAGCTGCCACCAATGAAACCCTTACAGCCCCCTTCAATGACTTTGCTGCTGTTGAGAAGATCTTTGAAGCCAACAAAGGAGAGATAGCCGTAGTCTTCCTCGAACCTGTTGTGGAAATTCCGGTTTCATTACTCCTAAACCTGATTTTCTTAGTTCCTTGCGCAAAATCACCAAGGAGAACAATGCCCTTCTCGTGTTTGATGAAGTTATGA

Protein sequence

>Msa0001420

MAASGIAGLTLLNCFSSSSSSSARCRTRSLTMAVSTDQKPSTEKLTLRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLSALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEANKGEIAVVFLEPVVEIPVSLLLNLIFLVPCAKSPRRTMPFSCLMKL*