Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284000 | XP_013445246.1 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 1.94e-101 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284000 | sp|Q941R6|MLP31_ARATH | 34.641 | 153 | 96 | 4 | 3 | 152 | 20 | 171 | 2.04e-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284000 | I3SJ62 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 9.26e-102 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657710 | Msa1284000 | 0.830534 | 2.782270e-55 | -8.615850e-47 |
| Msa0657720 | Msa1284000 | 0.841276 | 5.242842e-58 | -8.615850e-47 |
| Msa0702790 | Msa1284000 | 0.846712 | 1.828123e-59 | -8.615850e-47 |
| Msa0702800 | Msa1284000 | 0.836300 | 1.014539e-56 | -8.615850e-47 |
| Msa0703950 | Msa1284000 | 0.802267 | 6.084533e-49 | -8.615850e-47 |
| Msa0723090 | Msa1284000 | 0.808626 | 2.823186e-50 | -8.615850e-47 |
| Msa0828950 | Msa1284000 | 0.838430 | 2.889671e-57 | -8.615850e-47 |
| Msa0828960 | Msa1284000 | 0.835066 | 2.082910e-56 | -8.615850e-47 |
| Msa0189680 | Msa1284000 | 0.813375 | 2.642002e-51 | -8.615850e-47 |
| Msa0209140 | Msa1284000 | 0.807868 | 4.096898e-50 | -8.615850e-47 |
| Msa0231990 | Msa1284000 | 0.825186 | 5.377434e-54 | -8.615850e-47 |
| Msa0232060 | Msa1284000 | 0.824104 | 9.673167e-54 | -8.615850e-47 |
| Msa1238170 | Msa1284000 | 0.819170 | 1.336550e-52 | -8.615850e-47 |
| Msa1283930 | Msa1284000 | 0.824073 | 9.832810e-54 | -8.615850e-47 |
| Msa1284000 | Msa1284020 | 0.837075 | 6.436713e-57 | -8.615850e-47 |
| Msa1284000 | Msa1290900 | 0.801218 | 9.986282e-49 | -8.615850e-47 |
| Msa1284000 | Msa1322960 | 0.815276 | 1.004151e-51 | -8.615850e-47 |
| Msa1284000 | Msa1323070 | 0.851812 | 6.953729e-61 | -8.615850e-47 |
| Msa1284000 | Msa1326710 | 0.831988 | 1.221682e-55 | -8.615850e-47 |
| Msa1284000 | Msa1343280 | 0.815064 | 1.119650e-51 | -8.615850e-47 |
| Msa1284000 | Msa1422860 | 0.809044 | 2.298519e-50 | -8.615850e-47 |
| Msa1284000 | Msa1439250 | 0.846047 | 2.774738e-59 | -8.615850e-47 |
| Msa1284000 | Msa1439270 | 0.945679 | 1.943433e-104 | -8.615850e-47 |
| Msa1284000 | Msa1445530 | 0.818644 | 1.759956e-52 | -8.615850e-47 |
| Msa0256920 | Msa1284000 | 0.807957 | 3.921258e-50 | -8.615850e-47 |
| Msa0288620 | Msa1284000 | 0.805899 | 1.068477e-49 | -8.615850e-47 |
| Msa0289960 | Msa1284000 | 0.803944 | 2.737467e-49 | -8.615850e-47 |
| Msa0330520 | Msa1284000 | 0.810048 | 1.398746e-50 | -8.615850e-47 |
| Msa0334630 | Msa1284000 | 0.805542 | 1.269458e-49 | -8.615850e-47 |
| Msa0358300 | Msa1284000 | 0.822755 | 1.998657e-53 | -8.615850e-47 |
| Msa0909260 | Msa1284000 | 0.818115 | 2.319804e-52 | -8.615850e-47 |
| Msa0972680 | Msa1284000 | 0.826630 | 2.441012e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284000 | MtrunA17_Chr8g0355811 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 1.78e-105 | 298 |
| Msa1284000 | MtrunA17_Chr8g0355821 | 84.416 | 154 | 24 | 0 | 1 | 154 | 1 | 154 | 6.96e-97 | 276 |
| Msa1284000 | MtrunA17_Chr8g0355801 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 5.72e-95 | 271 |
| Msa1284000 | MtrunA17_Chr8g0355791 | 81.410 | 156 | 29 | 0 | 1 | 156 | 1 | 156 | 1.12e-91 | 263 |
| Msa1284000 | MtrunA17_Chr8g0355771 | 80.128 | 156 | 31 | 0 | 1 | 156 | 1 | 156 | 3.07e-90 | 259 |
| Msa1284000 | MtrunA17_Chr8g0355741 | 75.796 | 157 | 37 | 1 | 1 | 156 | 1 | 157 | 1.76e-84 | 244 |
| Msa1284000 | MtrunA17_Chr8g0355661 | 74.522 | 157 | 38 | 2 | 1 | 156 | 1 | 156 | 3.50e-84 | 244 |
| Msa1284000 | MtrunA17_Chr8g0355721 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 1.96e-80 | 234 |
| Msa1284000 | MtrunA17_Chr8g0355761 | 70.395 | 152 | 44 | 1 | 1 | 151 | 1 | 152 | 1.55e-76 | 224 |
| Msa1284000 | MtrunA17_Chr8g0355781 | 68.421 | 152 | 47 | 1 | 1 | 151 | 1 | 152 | 4.14e-75 | 221 |
| Msa1284000 | MtrunA17_Chr8g0355641 | 66.026 | 156 | 52 | 1 | 1 | 155 | 1 | 156 | 7.09e-75 | 220 |
| Msa1284000 | MtrunA17_Chr1g0160371 | 45.098 | 153 | 80 | 3 | 1 | 150 | 1 | 152 | 8.35e-40 | 131 |
| Msa1284000 | MtrunA17_Chr1g0160381 | 39.869 | 153 | 88 | 3 | 1 | 150 | 5 | 156 | 6.58e-37 | 124 |
| Msa1284000 | MtrunA17_Chr1g0160391 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 6.81e-30 | 106 |
| Msa1284000 | MtrunA17_Chr8g0339261 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 2.74e-24 | 92.0 |
| Msa1284000 | MtrunA17_Chr1g0160801 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 3.88e-22 | 86.3 |
| Msa1284000 | MtrunA17_Chr1g0160351 | 41.935 | 93 | 51 | 2 | 61 | 150 | 1 | 93 | 3.61e-20 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284000 | AT1G70840.1 | 34.641 | 153 | 96 | 4 | 3 | 152 | 20 | 171 | 2.07e-24 | 93.2 |
| Msa1284000 | AT5G28010.1 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 2.18e-24 | 93.2 |
| Msa1284000 | AT5G28010.2 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 2.18e-24 | 93.2 |
| Msa1284000 | AT1G70830.5 | 35.948 | 153 | 94 | 4 | 3 | 152 | 22 | 173 | 4.62e-24 | 92.4 |
| Msa1284000 | AT1G70830.3 | 35.714 | 154 | 95 | 4 | 3 | 153 | 22 | 174 | 6.54e-24 | 92.8 |
| Msa1284000 | AT1G70890.1 | 35.294 | 153 | 95 | 4 | 3 | 152 | 7 | 158 | 8.20e-24 | 91.3 |
| Msa1284000 | AT1G70830.2 | 35.714 | 154 | 95 | 4 | 3 | 153 | 22 | 174 | 4.75e-23 | 91.7 |
| Msa1284000 | AT1G70830.1 | 35.714 | 154 | 95 | 4 | 3 | 153 | 22 | 174 | 9.04e-23 | 92.4 |
| Msa1284000 | AT1G70830.1 | 34.641 | 153 | 96 | 4 | 3 | 152 | 184 | 335 | 2.85e-21 | 88.2 |
| Msa1284000 | AT1G70830.4 | 34.641 | 153 | 96 | 4 | 3 | 152 | 137 | 288 | 8.27e-22 | 89.0 |
| Msa1284000 | AT5G28000.1 | 32.026 | 153 | 100 | 4 | 3 | 152 | 13 | 164 | 8.78e-22 | 86.3 |
| Msa1284000 | AT4G23670.1 | 34.641 | 153 | 96 | 4 | 1 | 151 | 1 | 151 | 2.53e-21 | 84.7 |
| Msa1284000 | AT1G14930.1 | 31.210 | 157 | 104 | 4 | 1 | 155 | 1 | 155 | 8.98e-21 | 83.6 |
| Msa1284000 | AT1G70850.2 | 33.333 | 150 | 96 | 4 | 3 | 149 | 9 | 157 | 2.40e-20 | 84.3 |
| Msa1284000 | AT2G01520.1 | 31.373 | 153 | 101 | 4 | 1 | 151 | 1 | 151 | 3.70e-20 | 81.6 |
| Msa1284000 | AT1G70850.3 | 33.333 | 150 | 96 | 4 | 3 | 149 | 9 | 157 | 5.59e-20 | 84.7 |
| Msa1284000 | AT1G70850.3 | 34.965 | 143 | 89 | 4 | 13 | 152 | 175 | 316 | 8.87e-20 | 84.0 |
| Msa1284000 | AT1G70850.1 | 33.333 | 150 | 96 | 4 | 3 | 149 | 9 | 157 | 5.59e-20 | 84.7 |
| Msa1284000 | AT1G70850.1 | 34.965 | 143 | 89 | 4 | 13 | 152 | 175 | 316 | 8.87e-20 | 84.0 |
| Msa1284000 | AT2G01530.1 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 3.22e-19 | 79.3 |
| Msa1284000 | AT1G70870.1 | 35.484 | 155 | 78 | 5 | 1 | 150 | 1 | 138 | 3.12e-18 | 76.3 |
| Msa1284000 | AT1G14940.1 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 3.96e-18 | 76.6 |
| Msa1284000 | AT1G14950.1 | 29.936 | 157 | 106 | 4 | 1 | 155 | 1 | 155 | 2.14e-17 | 74.7 |
| Msa1284000 | AT4G14060.1 | 30.065 | 153 | 103 | 4 | 1 | 151 | 1 | 151 | 2.66e-17 | 74.3 |
| Msa1284000 | AT4G23680.1 | 30.263 | 152 | 102 | 4 | 1 | 150 | 1 | 150 | 1.25e-16 | 72.4 |
| Msa1284000 | AT1G23120.1 | 28.000 | 150 | 100 | 5 | 3 | 149 | 1 | 145 | 1.35e-16 | 72.4 |
| Msa1284000 | AT1G23130.1 | 27.517 | 149 | 105 | 3 | 3 | 149 | 10 | 157 | 2.11e-16 | 72.0 |
| Msa1284000 | AT1G70880.1 | 28.758 | 153 | 105 | 4 | 3 | 152 | 8 | 159 | 3.03e-16 | 71.6 |
| Msa1284000 | AT1G23120.2 | 26.950 | 141 | 97 | 4 | 10 | 149 | 60 | 195 | 3.19e-16 | 72.4 |
| Msa1284000 | AT1G35260.1 | 29.167 | 144 | 97 | 4 | 9 | 149 | 8 | 149 | 5.90e-16 | 70.9 |
| Msa1284000 | AT1G30990.1 | 29.801 | 151 | 101 | 5 | 1 | 149 | 1 | 148 | 5.42e-15 | 68.2 |
| Msa1284000 | AT1G24020.1 | 31.481 | 162 | 88 | 6 | 1 | 150 | 1 | 151 | 2.46e-14 | 66.6 |
| Msa1284000 | AT1G24020.2 | 31.481 | 162 | 88 | 6 | 1 | 150 | 1 | 151 | 2.46e-14 | 66.6 |
| Msa1284000 | AT1G14960.1 | 27.742 | 155 | 108 | 4 | 1 | 153 | 1 | 153 | 2.89e-14 | 66.6 |
| Msa1284000 | AT1G35310.1 | 28.058 | 139 | 96 | 4 | 13 | 149 | 12 | 148 | 3.38e-13 | 63.5 |
| Msa1284000 | AT3G26460.1 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 3.79e-13 | 63.5 |
| Msa1284000 | AT3G26450.1 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 1.81e-11 | 58.9 |
| Msa1284000 | AT1G14940.2 | 26.115 | 157 | 96 | 4 | 1 | 155 | 1 | 139 | 3.94e-11 | 57.8 |
Find 30 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCACATACAAGCTATT+TGG | 0.273919 | 8_3:-25904782 | Msa1284000:CDS |
| GTCTTTAAGCTCATCTTAGA+AGG | 0.291250 | 8_3:-25904737 | Msa1284000:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 8_3:+25906315 | None:intergenic |
| AACATTAATGAAAGAGTTCA+TGG | 0.350725 | 8_3:-25906340 | Msa1284000:CDS |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8_3:-25904700 | Msa1284000:CDS |
| GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8_3:-25906424 | Msa1284000:CDS |
| TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8_3:-25904759 | Msa1284000:CDS |
| AGGAAATCCATCCATCCATT+TGG | 0.440781 | 8_3:+25904638 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8_3:-25906271 | Msa1284000:intron |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8_3:-25904611 | Msa1284000:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8_3:-25906312 | Msa1284000:CDS |
| TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8_3:-25904588 | Msa1284000:CDS |
| AGATTGGCATCATACTGATT+CGG | 0.504369 | 8_3:-25906296 | Msa1284000:CDS |
| TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8_3:-25904595 | Msa1284000:CDS |
| GAGGATATCGATACTCCAAA+TGG | 0.515854 | 8_3:-25904653 | Msa1284000:CDS |
| ATCACATACAAGCTATTTGG+TGG | 0.530005 | 8_3:-25904779 | Msa1284000:CDS |
| CGATACTCCAAATGGATGGA+TGG | 0.534738 | 8_3:-25904645 | Msa1284000:CDS |
| GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8_3:-25906423 | Msa1284000:CDS |
| ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8_3:-25904596 | Msa1284000:CDS |
| TCTTTAAGCTCATCTTAGAA+GGG | 0.545692 | 8_3:-25904736 | Msa1284000:CDS |
| GTTCTACAAACTATTTGCAT+CGG | 0.558109 | 8_3:-25906380 | Msa1284000:CDS |
| AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8_3:+25906391 | None:intergenic |
| GAAGGGCTTAACAAGGCTGA+TGG | 0.584478 | 8_3:-25904719 | Msa1284000:CDS |
| ATATCGATACTCCAAATGGA+TGG | 0.593139 | 8_3:-25904649 | Msa1284000:CDS |
| ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8_3:-25906285 | Msa1284000:CDS |
| CATCTTAGAAGGGCTTAACA+AGG | 0.611102 | 8_3:-25904726 | Msa1284000:CDS |
| CATGGTGCCAAACTTCATGA+AGG | 0.632424 | 8_3:-25906322 | Msa1284000:CDS |
| TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8_3:-25904594 | Msa1284000:CDS |
| TGACGTAATAACAGATGGCG+AGG | 0.668621 | 8_3:-25904852 | Msa1284000:intron |
| TGATTATGAGAAGAACAATG+AGG | 0.681814 | 8_3:-25904672 | Msa1284000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATTATCAAAAAAATAA+TGG | + | chr8_3:25905138-25905157 | None:intergenic | 10.0% |
| !! | ATATATATTATTCGAAAAAA+AGG | - | chr8_3:25905182-25905201 | Msa1284000:intron | 10.0% |
| !!! | ATTTTTAAAAAAATGTGAAA+GGG | - | chr8_3:25905788-25905807 | Msa1284000:intron | 10.0% |
| !!! | TATCTTATTATAATATTTTC+TGG | - | chr8_3:25906069-25906088 | Msa1284000:intron | 10.0% |
| !! | CTTAATTATCAAAAAAATAA+TGG | + | chr8_3:25905138-25905157 | None:intergenic | 10.0% |
| !! | ATATATATTATTCGAAAAAA+AGG | - | chr8_3:25905182-25905201 | Msa1284000:intron | 10.0% |
| !!! | ATTTTTAAAAAAATGTGAAA+GGG | - | chr8_3:25905788-25905807 | Msa1284000:intron | 10.0% |
| !!! | TATCTTATTATAATATTTTC+TGG | - | chr8_3:25906069-25906088 | Msa1284000:intron | 10.0% |
| !!! | GTTTTCTATTACAAATTTTT+TGG | - | chr8_3:25904825-25904844 | Msa1284000:CDS | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | - | chr8_3:25904856-25904875 | Msa1284000:intron | 15.0% |
| !! | AAATTCTAAATTATGTCAAT+AGG | + | chr8_3:25904970-25904989 | None:intergenic | 15.0% |
| !! | GAATAATATATATTATGAGT+GGG | + | chr8_3:25905175-25905194 | None:intergenic | 15.0% |
| !! | TAAATTTACTATGAAATAGT+AGG | - | chr8_3:25905463-25905482 | Msa1284000:intron | 15.0% |
| !! | AAATTTACTATGAAATAGTA+GGG | - | chr8_3:25905464-25905483 | Msa1284000:intron | 15.0% |
| !!! | GGATTTATATTTTGTTTTTT+AGG | - | chr8_3:25905704-25905723 | Msa1284000:intron | 15.0% |
| !!! | CATTTTTAAAAAAATGTGAA+AGG | - | chr8_3:25905787-25905806 | Msa1284000:intron | 15.0% |
| !!! | ATCTTTAAATAGTATTTTAG+AGG | - | chr8_3:25905880-25905899 | Msa1284000:intron | 15.0% |
| !!! | GTTTTCTATTACAAATTTTT+TGG | - | chr8_3:25904825-25904844 | Msa1284000:CDS | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | - | chr8_3:25904856-25904875 | Msa1284000:intron | 15.0% |
| !! | AAATTCTAAATTATGTCAAT+AGG | + | chr8_3:25904970-25904989 | None:intergenic | 15.0% |
| !! | GAATAATATATATTATGAGT+GGG | + | chr8_3:25905175-25905194 | None:intergenic | 15.0% |
| !! | TAAATTTACTATGAAATAGT+AGG | - | chr8_3:25905463-25905482 | Msa1284000:intron | 15.0% |
| !! | AAATTTACTATGAAATAGTA+GGG | - | chr8_3:25905464-25905483 | Msa1284000:intron | 15.0% |
| !!! | GGATTTATATTTTGTTTTTT+AGG | - | chr8_3:25905704-25905723 | Msa1284000:intron | 15.0% |
| !!! | CATTTTTAAAAAAATGTGAA+AGG | - | chr8_3:25905787-25905806 | Msa1284000:intron | 15.0% |
| !!! | ATCTTTAAATAGTATTTTAG+AGG | - | chr8_3:25905880-25905899 | Msa1284000:intron | 15.0% |
| !! | CGAATAATATATATTATGAG+TGG | + | chr8_3:25905176-25905195 | None:intergenic | 20.0% |
| !!! | GTATAATTTTTTCTTTACGA+TGG | - | chr8_3:25905289-25905308 | Msa1284000:intron | 20.0% |
| !!! | CCTTAAAGTTTTTAGTAAAA+CGG | - | chr8_3:25905395-25905414 | Msa1284000:intron | 20.0% |
| !!! | TATGTATTTGATTTATGCTT+AGG | - | chr8_3:25905494-25905513 | Msa1284000:intron | 20.0% |
| !!! | TTTTGTTTTTTAGGATACAA+AGG | - | chr8_3:25905713-25905732 | Msa1284000:intron | 20.0% |
| !!! | CAATAAAATACGTTTTTCAA+AGG | + | chr8_3:25906121-25906140 | None:intergenic | 20.0% |
| !! | CGAATAATATATATTATGAG+TGG | + | chr8_3:25905176-25905195 | None:intergenic | 20.0% |
| !!! | GTATAATTTTTTCTTTACGA+TGG | - | chr8_3:25905289-25905308 | Msa1284000:intron | 20.0% |
| !!! | CCTTAAAGTTTTTAGTAAAA+CGG | - | chr8_3:25905395-25905414 | Msa1284000:intron | 20.0% |
| !!! | TATGTATTTGATTTATGCTT+AGG | - | chr8_3:25905494-25905513 | Msa1284000:intron | 20.0% |
| !!! | TTTTGTTTTTTAGGATACAA+AGG | - | chr8_3:25905713-25905732 | Msa1284000:intron | 20.0% |
| !!! | CAATAAAATACGTTTTTCAA+AGG | + | chr8_3:25906121-25906140 | None:intergenic | 20.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | - | chr8_3:25904590-25904609 | Msa1284000:CDS | 25.0% |
| ! | AACATTAATGAAAGAGTTCA+TGG | - | chr8_3:25904673-25904692 | Msa1284000:CDS | 25.0% |
| ! | AGTATCATTTGTTTCCTTTA+AGG | + | chr8_3:25905240-25905259 | None:intergenic | 25.0% |
| ! | AAAAAATTATACTCGTACCA+AGG | + | chr8_3:25905281-25905300 | None:intergenic | 25.0% |
| ! | TTATCTCTAGACAAAAAATC+TGG | + | chr8_3:25905326-25905345 | None:intergenic | 25.0% |
| ! | TTTGTCTAGAGATAAAAAGT+AGG | - | chr8_3:25905331-25905350 | Msa1284000:intron | 25.0% |
| ! | TTGTCTAGAGATAAAAAGTA+GGG | - | chr8_3:25905332-25905351 | Msa1284000:intron | 25.0% |
| ! | GTTTGTATAATATGATCCTT+CGG | - | chr8_3:25905354-25905373 | Msa1284000:intron | 25.0% |
| !! | CCGTTTTACTAAAAACTTTA+AGG | + | chr8_3:25905398-25905417 | None:intergenic | 25.0% |
| !! | TCATTTTACAACAGTAATGT+GGG | - | chr8_3:25905683-25905702 | Msa1284000:intron | 25.0% |
| !!! | GTGCTTTATTTAAAGATCTA+AGG | + | chr8_3:25905825-25905844 | None:intergenic | 25.0% |
| ! | AACAATGCATAATATATGCA+AGG | - | chr8_3:25905944-25905963 | Msa1284000:intron | 25.0% |
| ! | AAAATCACATACAAGCTATT+TGG | - | chr8_3:25906231-25906250 | Msa1284000:intron | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | - | chr8_3:25906254-25906273 | Msa1284000:intron | 25.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | - | chr8_3:25904590-25904609 | Msa1284000:CDS | 25.0% |
| ! | AACATTAATGAAAGAGTTCA+TGG | - | chr8_3:25904673-25904692 | Msa1284000:CDS | 25.0% |
| ! | AGTATCATTTGTTTCCTTTA+AGG | + | chr8_3:25905240-25905259 | None:intergenic | 25.0% |
| ! | AAAAAATTATACTCGTACCA+AGG | + | chr8_3:25905281-25905300 | None:intergenic | 25.0% |
| ! | TTATCTCTAGACAAAAAATC+TGG | + | chr8_3:25905326-25905345 | None:intergenic | 25.0% |
| ! | TTTGTCTAGAGATAAAAAGT+AGG | - | chr8_3:25905331-25905350 | Msa1284000:intron | 25.0% |
| ! | TTGTCTAGAGATAAAAAGTA+GGG | - | chr8_3:25905332-25905351 | Msa1284000:intron | 25.0% |
| ! | GTTTGTATAATATGATCCTT+CGG | - | chr8_3:25905354-25905373 | Msa1284000:intron | 25.0% |
| !! | CCGTTTTACTAAAAACTTTA+AGG | + | chr8_3:25905398-25905417 | None:intergenic | 25.0% |
| !! | TCATTTTACAACAGTAATGT+GGG | - | chr8_3:25905683-25905702 | Msa1284000:intron | 25.0% |
| !!! | GTGCTTTATTTAAAGATCTA+AGG | + | chr8_3:25905825-25905844 | None:intergenic | 25.0% |
| ! | AACAATGCATAATATATGCA+AGG | - | chr8_3:25905944-25905963 | Msa1284000:intron | 25.0% |
| ! | AAAATCACATACAAGCTATT+TGG | - | chr8_3:25906231-25906250 | Msa1284000:intron | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | - | chr8_3:25906254-25906273 | Msa1284000:intron | 25.0% |
| GGTAAACTTATTACTGAACT+TGG | - | chr8_3:25904589-25904608 | Msa1284000:CDS | 30.0% | |
| GTTCTACAAACTATTTGCAT+CGG | - | chr8_3:25904633-25904652 | Msa1284000:CDS | 30.0% | |
| TCTTCGTTATAGATCTCATT+TGG | + | chr8_3:25904896-25904915 | None:intergenic | 30.0% | |
| AAAGCAACAAATGACCTTAA+AGG | - | chr8_3:25905223-25905242 | Msa1284000:intron | 30.0% | |
| AAATGATACTCAACCATCTT+TGG | - | chr8_3:25905250-25905269 | Msa1284000:intron | 30.0% | |
| ! | TGCCATGATTTGTAATTTCA+TGG | - | chr8_3:25905565-25905584 | Msa1284000:intron | 30.0% |
| AGCCATGAAATTACAAATCA+TGG | + | chr8_3:25905570-25905589 | None:intergenic | 30.0% | |
| TAATTTCATGGCTCTTTCTT+GGG | - | chr8_3:25905577-25905596 | Msa1284000:intron | 30.0% | |
| !! | GTCATTTTACAACAGTAATG+TGG | - | chr8_3:25905682-25905701 | Msa1284000:intron | 30.0% |
| !!! | GAATGTCTCTTTCTTTTTTG+TGG | + | chr8_3:25905991-25906010 | None:intergenic | 30.0% |
| TCTTTAAGCTCATCTTAGAA+GGG | - | chr8_3:25906277-25906296 | Msa1284000:CDS | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | - | chr8_3:25906341-25906360 | Msa1284000:CDS | 30.0% | |
| !! | AAAAGCACTAGAGATATTGA+TGG | - | chr8_3:25906402-25906421 | Msa1284000:CDS | 30.0% |
| GGTAAACTTATTACTGAACT+TGG | - | chr8_3:25904589-25904608 | Msa1284000:CDS | 30.0% | |
| GTTCTACAAACTATTTGCAT+CGG | - | chr8_3:25904633-25904652 | Msa1284000:CDS | 30.0% | |
| TCTTCGTTATAGATCTCATT+TGG | + | chr8_3:25904896-25904915 | None:intergenic | 30.0% | |
| AAAGCAACAAATGACCTTAA+AGG | - | chr8_3:25905223-25905242 | Msa1284000:intron | 30.0% | |
| AAATGATACTCAACCATCTT+TGG | - | chr8_3:25905250-25905269 | Msa1284000:intron | 30.0% | |
| ! | TGCCATGATTTGTAATTTCA+TGG | - | chr8_3:25905565-25905584 | Msa1284000:intron | 30.0% |
| AGCCATGAAATTACAAATCA+TGG | + | chr8_3:25905570-25905589 | None:intergenic | 30.0% | |
| TAATTTCATGGCTCTTTCTT+GGG | - | chr8_3:25905577-25905596 | Msa1284000:intron | 30.0% | |
| !! | GTCATTTTACAACAGTAATG+TGG | - | chr8_3:25905682-25905701 | Msa1284000:intron | 30.0% |
| !!! | GAATGTCTCTTTCTTTTTTG+TGG | + | chr8_3:25905991-25906010 | None:intergenic | 30.0% |
| TCTTTAAGCTCATCTTAGAA+GGG | - | chr8_3:25906277-25906296 | Msa1284000:CDS | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | - | chr8_3:25906341-25906360 | Msa1284000:CDS | 30.0% | |
| !! | AAAAGCACTAGAGATATTGA+TGG | - | chr8_3:25906402-25906421 | Msa1284000:CDS | 30.0% |
| ATCTTCACCTTCATGAAGTT+TGG | + | chr8_3:25904701-25904720 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | chr8_3:25904701-25904720 | Msa1284000:CDS | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | - | chr8_3:25904717-25904736 | Msa1284000:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | - | chr8_3:25904728-25904747 | Msa1284000:CDS | 35.0% |
| AAACACTGGACTTATGTCAT+AGG | - | chr8_3:25904742-25904761 | Msa1284000:CDS | 35.0% | |
| TGATTTATGCTTAGGTGTTC+AGG | - | chr8_3:25905502-25905521 | Msa1284000:intron | 35.0% | |
| GTAATTTCATGGCTCTTTCT+TGG | - | chr8_3:25905576-25905595 | Msa1284000:intron | 35.0% | |
| GCATAATATATGCAAGGTTC+AGG | - | chr8_3:25905950-25905969 | Msa1284000:intron | 35.0% | |
| !!! | TGTCTCTTTCTTTTTTGTGG+TGG | + | chr8_3:25905988-25906007 | None:intergenic | 35.0% |
| ATCACATACAAGCTATTTGG+TGG | - | chr8_3:25906234-25906253 | Msa1284000:intron | 35.0% | |
| GTCTTTAAGCTCATCTTAGA+AGG | - | chr8_3:25906276-25906295 | Msa1284000:CDS | 35.0% | |
| ATATCGATACTCCAAATGGA+TGG | - | chr8_3:25906364-25906383 | Msa1284000:CDS | 35.0% | |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | + | chr8_3:25906398-25906417 | None:intergenic | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | - | chr8_3:25906417-25906436 | Msa1284000:CDS | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | - | chr8_3:25906418-25906437 | Msa1284000:CDS | 35.0% |
| ATCTTCACCTTCATGAAGTT+TGG | + | chr8_3:25904701-25904720 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | chr8_3:25904701-25904720 | Msa1284000:CDS | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | - | chr8_3:25904717-25904736 | Msa1284000:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | - | chr8_3:25904728-25904747 | Msa1284000:CDS | 35.0% |
| AAACACTGGACTTATGTCAT+AGG | - | chr8_3:25904742-25904761 | Msa1284000:CDS | 35.0% | |
| TGATTTATGCTTAGGTGTTC+AGG | - | chr8_3:25905502-25905521 | Msa1284000:intron | 35.0% | |
| GTAATTTCATGGCTCTTTCT+TGG | - | chr8_3:25905576-25905595 | Msa1284000:intron | 35.0% | |
| GCATAATATATGCAAGGTTC+AGG | - | chr8_3:25905950-25905969 | Msa1284000:intron | 35.0% | |
| !!! | TGTCTCTTTCTTTTTTGTGG+TGG | + | chr8_3:25905988-25906007 | None:intergenic | 35.0% |
| ATCACATACAAGCTATTTGG+TGG | - | chr8_3:25906234-25906253 | Msa1284000:intron | 35.0% | |
| GTCTTTAAGCTCATCTTAGA+AGG | - | chr8_3:25906276-25906295 | Msa1284000:CDS | 35.0% | |
| ATATCGATACTCCAAATGGA+TGG | - | chr8_3:25906364-25906383 | Msa1284000:CDS | 35.0% | |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | + | chr8_3:25906398-25906417 | None:intergenic | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | - | chr8_3:25906417-25906436 | Msa1284000:CDS | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | - | chr8_3:25906418-25906437 | Msa1284000:CDS | 35.0% |
| AGTTTGTAGAACTTGTCAGC+TGG | + | chr8_3:25904625-25904644 | None:intergenic | 40.0% | |
| CGAGACTGATCTAACAATGA+AGG | - | chr8_3:25904933-25904952 | Msa1284000:intron | 40.0% | |
| TATCGAAATCATTGCACACG+AGG | - | chr8_3:25905073-25905092 | Msa1284000:intron | 40.0% | |
| AACCATCTTTGGATTCACCT+TGG | - | chr8_3:25905261-25905280 | Msa1284000:intron | 40.0% | |
| TACCAAGGTGAATCCAAAGA+TGG | + | chr8_3:25905266-25905285 | None:intergenic | 40.0% | |
| ! | CGTCTTTAGACATTTTCCGA+AGG | + | chr8_3:25905373-25905392 | None:intergenic | 40.0% |
| !!! | TCTTTCTTTTTTGTGGTGGC+CGG | + | chr8_3:25905984-25906003 | None:intergenic | 40.0% |
| CATCTTAGAAGGGCTTAACA+AGG | - | chr8_3:25906287-25906306 | Msa1284000:CDS | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | - | chr8_3:25906313-25906332 | Msa1284000:CDS | 40.0% | |
| GAGGATATCGATACTCCAAA+TGG | - | chr8_3:25906360-25906379 | Msa1284000:CDS | 40.0% | |
| AGGAAATCCATCCATCCATT+TGG | + | chr8_3:25906378-25906397 | None:intergenic | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | - | chr8_3:25906419-25906438 | Msa1284000:CDS | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | - | chr8_3:25906425-25906444 | Msa1284000:CDS | 40.0% | |
| AGTTTGTAGAACTTGTCAGC+TGG | + | chr8_3:25904625-25904644 | None:intergenic | 40.0% | |
| CGAGACTGATCTAACAATGA+AGG | - | chr8_3:25904933-25904952 | Msa1284000:intron | 40.0% | |
| TATCGAAATCATTGCACACG+AGG | - | chr8_3:25905073-25905092 | Msa1284000:intron | 40.0% | |
| AACCATCTTTGGATTCACCT+TGG | - | chr8_3:25905261-25905280 | Msa1284000:intron | 40.0% | |
| TACCAAGGTGAATCCAAAGA+TGG | + | chr8_3:25905266-25905285 | None:intergenic | 40.0% | |
| ! | CGTCTTTAGACATTTTCCGA+AGG | + | chr8_3:25905373-25905392 | None:intergenic | 40.0% |
| !!! | TCTTTCTTTTTTGTGGTGGC+CGG | + | chr8_3:25905984-25906003 | None:intergenic | 40.0% |
| CATCTTAGAAGGGCTTAACA+AGG | - | chr8_3:25906287-25906306 | Msa1284000:CDS | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | - | chr8_3:25906313-25906332 | Msa1284000:CDS | 40.0% | |
| GAGGATATCGATACTCCAAA+TGG | - | chr8_3:25906360-25906379 | Msa1284000:CDS | 40.0% | |
| AGGAAATCCATCCATCCATT+TGG | + | chr8_3:25906378-25906397 | None:intergenic | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | - | chr8_3:25906419-25906438 | Msa1284000:CDS | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | - | chr8_3:25906425-25906444 | Msa1284000:CDS | 40.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | - | chr8_3:25904691-25904710 | Msa1284000:CDS | 45.0% |
| TCTTGGGTGCAATGTATGCT+TGG | - | chr8_3:25905593-25905612 | Msa1284000:intron | 45.0% | |
| CTTGGGTGCAATGTATGCTT+GGG | - | chr8_3:25905594-25905613 | Msa1284000:intron | 45.0% | |
| ! | CAAGGTTCAGGTTCAAATCC+CGG | - | chr8_3:25905962-25905981 | Msa1284000:intron | 45.0% |
| !!! | CTTTCTTTTTTGTGGTGGCC+GGG | + | chr8_3:25905983-25906002 | None:intergenic | 45.0% |
| GCCTCTGACGTAATAACAGA+TGG | - | chr8_3:25906156-25906175 | Msa1284000:intron | 45.0% | |
| GCCATCTGTTATTACGTCAG+AGG | + | chr8_3:25906160-25906179 | None:intergenic | 45.0% | |
| TGACGTAATAACAGATGGCG+AGG | - | chr8_3:25906161-25906180 | Msa1284000:intron | 45.0% | |
| CGATACTCCAAATGGATGGA+TGG | - | chr8_3:25906368-25906387 | Msa1284000:CDS | 45.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | - | chr8_3:25904691-25904710 | Msa1284000:CDS | 45.0% |
| TCTTGGGTGCAATGTATGCT+TGG | - | chr8_3:25905593-25905612 | Msa1284000:intron | 45.0% | |
| CTTGGGTGCAATGTATGCTT+GGG | - | chr8_3:25905594-25905613 | Msa1284000:intron | 45.0% | |
| ! | CAAGGTTCAGGTTCAAATCC+CGG | - | chr8_3:25905962-25905981 | Msa1284000:intron | 45.0% |
| !!! | CTTTCTTTTTTGTGGTGGCC+GGG | + | chr8_3:25905983-25906002 | None:intergenic | 45.0% |
| GCCTCTGACGTAATAACAGA+TGG | - | chr8_3:25906156-25906175 | Msa1284000:intron | 45.0% | |
| GCCATCTGTTATTACGTCAG+AGG | + | chr8_3:25906160-25906179 | None:intergenic | 45.0% | |
| TGACGTAATAACAGATGGCG+AGG | - | chr8_3:25906161-25906180 | Msa1284000:intron | 45.0% | |
| CGATACTCCAAATGGATGGA+TGG | - | chr8_3:25906368-25906387 | Msa1284000:CDS | 45.0% | |
| !!! | TAATTTAGAATTTTTTTAAT+TGG | - | chr8_3:25904977-25904996 | Msa1284000:intron | 5.0% |
| !!! | CTATTATTATTTTATTTTTT+TGG | + | chr8_3:25905651-25905670 | None:intergenic | 5.0% |
| !!! | TATTATATATTTTTTTAATG+CGG | - | chr8_3:25906022-25906041 | Msa1284000:intron | 5.0% |
| !! | TAATAAGATAATAATAATAA+AGG | + | chr8_3:25906059-25906078 | None:intergenic | 5.0% |
| !!! | TAATTTAGAATTTTTTTAAT+TGG | - | chr8_3:25904977-25904996 | Msa1284000:intron | 5.0% |
| !!! | CTATTATTATTTTATTTTTT+TGG | + | chr8_3:25905651-25905670 | None:intergenic | 5.0% |
| !!! | TATTATATATTTTTTTAATG+CGG | - | chr8_3:25906022-25906041 | Msa1284000:intron | 5.0% |
| !! | TAATAAGATAATAATAATAA+AGG | + | chr8_3:25906059-25906078 | None:intergenic | 5.0% |
| CTTCGTGTGCTTAGCTCAGT+TGG | - | chr8_3:25905917-25905936 | Msa1284000:intron | 50.0% | |
| GAAGGGCTTAACAAGGCTGA+TGG | - | chr8_3:25906294-25906313 | Msa1284000:CDS | 50.0% | |
| CTTCGTGTGCTTAGCTCAGT+TGG | - | chr8_3:25905917-25905936 | Msa1284000:intron | 50.0% | |
| GAAGGGCTTAACAAGGCTGA+TGG | - | chr8_3:25906294-25906313 | Msa1284000:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 25904577 | 25906458 | 25904577 | ID=Msa1284000;Name=Msa1284000 |
| chr8_3 | mRNA | 25904577 | 25906458 | 25904577 | ID=Msa1284000-mRNA-1;Parent=Msa1284000;Name=Msa1284000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|156 |
| chr8_3 | exon | 25906272 | 25906458 | 25906272 | ID=Msa1284000-mRNA-1:exon:9076;Parent=Msa1284000-mRNA-1 |
| chr8_3 | exon | 25904577 | 25904860 | 25904577 | ID=Msa1284000-mRNA-1:exon:9075;Parent=Msa1284000-mRNA-1 |
| chr8_3 | CDS | 25906272 | 25906458 | 25906272 | ID=Msa1284000-mRNA-1:cds;Parent=Msa1284000-mRNA-1 |
| chr8_3 | CDS | 25904577 | 25904860 | 25904577 | ID=Msa1284000-mRNA-1:cds;Parent=Msa1284000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
