AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0501080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501080 MtrunA17_Chr3g0133341 97.887 568 12 0 1 568 1 568 0.0 1150
Msa0501080 MtrunA17_Chr1g0193391 49.293 566 254 8 10 559 11 559 0.0 563
Msa0501080 MtrunA17_Chr7g0271221 50.000 552 250 6 14 556 17 551 0.0 545
Msa0501080 MtrunA17_Chr2g0284701 47.935 557 266 8 16 550 34 588 0.0 530
Msa0501080 MtrunA17_Chr4g0069581 49.242 528 245 4 32 550 4 517 5.96e-173 501
Msa0501080 MtrunA17_Chr8g0379971 44.541 577 277 9 13 550 19 591 1.13e-164 481
Msa0501080 MtrunA17_Chr8g0379991 44.876 566 260 7 35 550 1 564 2.55e-154 454
Msa0501080 MtrunA17_Chr5g0415961 41.103 562 301 7 10 550 20 572 6.47e-151 446
Msa0501080 MtrunA17_Chr8g0362711 41.404 570 299 7 10 556 20 577 1.12e-146 434
Msa0501080 MtrunA17_Chr2g0276751 40.761 552 294 8 10 550 34 563 2.29e-144 429
Msa0501080 MtrunA17_Chr5g0422881 39.539 564 323 6 14 564 20 578 1.01e-140 420
Msa0501080 MtrunA17_Chr8g0375311 37.545 554 326 5 10 550 36 582 1.60e-131 396
Msa0501080 MtrunA17_Chr8g0375291 38.321 548 318 5 10 544 36 576 1.37e-128 389
Msa0501080 MtrunA17_Chr4g0005901 39.029 556 316 8 10 552 28 573 1.92e-128 388
Msa0501080 MtrunA17_Chr5g0399061 36.814 565 331 9 11 559 24 578 2.51e-128 388
Msa0501080 MtrunA17_Chr7g0261811 38.686 548 324 6 10 549 23 566 5.36e-128 387
Msa0501080 MtrunA17_Chr7g0261881 38.251 549 327 6 10 550 23 567 7.37e-127 384
Msa0501080 MtrunA17_Chr8g0375341 37.276 558 328 6 10 553 36 585 1.58e-126 383
Msa0501080 MtrunA17_Chr7g0241741 38.530 558 316 10 10 552 18 563 1.63e-126 382
Msa0501080 MtrunA17_Chr7g0261791 36.984 557 340 6 10 558 25 578 5.01e-126 382
Msa0501080 MtrunA17_Chr3g0142101 36.861 567 329 11 14 567 35 585 1.34e-125 381
Msa0501080 MtrunA17_Chr5g0399071 37.589 564 330 7 10 559 21 576 5.36e-125 379
Msa0501080 MtrunA17_Chr8g0375351 36.871 556 331 5 10 552 36 584 6.62e-124 376
Msa0501080 MtrunA17_Chr8g0375321 37.004 554 331 5 10 551 33 580 9.01e-123 373
Msa0501080 MtrunA17_Chr1g0187241 35.805 553 343 4 6 550 18 566 1.70e-121 370
Msa0501080 MtrunA17_Chr4g0056431 37.986 566 328 8 10 559 21 579 6.43e-121 369
Msa0501080 MtrunA17_Chr7g0255621 35.602 573 350 7 6 564 12 579 1.18e-120 369
Msa0501080 MtrunA17_Chr3g0142091 36.590 563 332 9 14 564 26 575 1.26e-120 368
Msa0501080 MtrunA17_Chr3g0104011 35.676 555 334 8 10 550 18 563 1.64e-119 365
Msa0501080 MtrunA17_Chr7g0261771 36.131 548 340 5 10 550 27 571 2.51e-119 365
Msa0501080 MtrunA17_Chr8g0375331 36.643 554 331 5 10 550 20 566 3.00e-118 361
Msa0501080 MtrunA17_Chr7g0261851 36.918 558 342 5 6 556 20 574 3.42e-118 362
Msa0501080 MtrunA17_Chr8g0375361 36.347 553 328 6 13 550 38 581 8.39e-118 361
Msa0501080 MtrunA17_Chr7g0214731 36.252 571 340 11 16 568 63 627 4.64e-116 358
Msa0501080 MtrunA17_Chr7g0255611 35.192 574 347 10 9 564 26 592 4.71e-116 357
Msa0501080 MtrunA17_Chr4g0063591 37.702 557 314 9 11 550 19 559 1.36e-114 352
Msa0501080 MtrunA17_Chr7g0255601 35.519 549 335 7 16 550 29 572 2.00e-112 348
Msa0501080 MtrunA17_Chr1g0166711 35.766 548 341 5 10 550 21 564 1.79e-111 345
Msa0501080 MtrunA17_Chr1g0166791 32.605 549 358 5 10 550 20 564 8.64e-110 340
Msa0501080 MtrunA17_Chr7g0240381 35.357 560 333 9 6 553 19 561 9.09e-109 337
Msa0501080 MtrunA17_Chr3g0114501 36.823 554 327 9 10 550 18 561 1.25e-108 337
Msa0501080 MtrunA17_Chr7g0261661 40.749 454 257 6 104 549 3 452 1.26e-108 334
Msa0501080 MtrunA17_Chr4g0008651 34.234 555 344 8 18 562 38 581 1.39e-105 329
Msa0501080 MtrunA17_Chr3g0112611 34.426 549 339 7 18 555 36 574 8.39e-103 322
Msa0501080 MtrunA17_Chr8g0353031 35.053 562 313 10 16 553 20 553 2.03e-102 320
Msa0501080 MtrunA17_Chr5g0439381 34.103 563 346 7 10 564 24 569 5.48e-102 320
Msa0501080 MtrunA17_Chr1g0166771 34.816 517 315 8 27 533 3 507 6.01e-102 318
Msa0501080 MtrunA17_Chr4g0014871 33.816 553 329 10 10 550 26 553 2.99e-101 317
Msa0501080 MtrunA17_Chr5g0415791 35.125 558 340 8 14 554 29 581 4.43e-101 318
Msa0501080 MtrunA17_Chr3g0112671 33.757 551 334 8 22 562 41 570 5.32e-101 317
Msa0501080 MtrunA17_Chr1g0166741 33.586 527 331 6 13 531 26 541 4.26e-100 315
Msa0501080 MtrunA17_Chr7g0217461 32.230 574 362 7 10 564 20 585 6.65e-98 309
Msa0501080 MtrunA17_Chr4g0014801 34.601 552 325 10 10 550 25 551 2.11e-97 307
Msa0501080 MtrunA17_Chr1g0166731 36.543 457 279 5 101 550 9 461 4.01e-96 301
Msa0501080 MtrunA17_Chr4g0054891 31.634 569 360 8 10 562 106 661 1.20e-95 306
Msa0501080 MtrunA17_Chr4g0014791 34.182 550 328 10 10 550 25 549 1.30e-95 302
Msa0501080 MtrunA17_Chr4g0014781 33.091 550 336 8 10 550 25 551 4.12e-95 301
Msa0501080 MtrunA17_Chr5g0400371 30.071 562 371 7 10 555 108 663 2.70e-94 302
Msa0501080 MtrunA17_Chr3g0077151 34.539 553 317 11 10 550 24 543 2.82e-94 298
Msa0501080 MtrunA17_Chr4g0014841 33.273 550 333 10 10 550 25 549 1.42e-93 297
Msa0501080 MtrunA17_Chr1g0213711 30.228 569 366 11 14 566 21 574 3.26e-93 297
Msa0501080 MtrunA17_Chr7g0218851 30.672 551 354 11 13 548 45 582 2.78e-91 292
Msa0501080 MtrunA17_Chr7g0261751 34.958 472 267 4 10 443 27 496 6.00e-91 289
Msa0501080 MtrunA17_Chr4g0059991 30.957 575 348 13 12 554 20 577 1.78e-90 290
Msa0501080 MtrunA17_Chr4g0011471 32.661 545 334 8 24 548 26 557 1.85e-90 289
Msa0501080 MtrunA17_Chr4g0059971 31.217 567 350 8 10 550 32 584 2.73e-89 287
Msa0501080 MtrunA17_Chr7g0214461 29.982 547 357 10 15 548 79 612 8.20e-88 284
Msa0501080 MtrunA17_Chr3g0082631 35.682 440 259 7 140 559 30 465 8.82e-88 279
Msa0501080 MtrunA17_Chr4g0060071 51.210 248 116 1 309 551 52 299 5.42e-87 271
Msa0501080 MtrunA17_Chr4g0011041 29.696 559 362 8 10 548 32 579 1.09e-86 280
Msa0501080 MtrunA17_Chr4g0059981 30.690 580 359 13 11 563 30 593 5.64e-86 278
Msa0501080 MtrunA17_Chr4g0014861 35.280 428 253 8 136 550 12 428 1.46e-83 267
Msa0501080 MtrunA17_Chr1g0147631 32.860 563 343 12 14 556 25 572 4.33e-83 270
Msa0501080 MtrunA17_Chr2g0331481 31.524 571 356 12 5 554 16 572 3.86e-82 269
Msa0501080 MtrunA17_Chr2g0331521 30.590 559 358 13 14 553 22 569 8.02e-82 267
Msa0501080 MtrunA17_Chr4g0060001 31.588 554 344 11 15 547 30 569 2.24e-81 266
Msa0501080 MtrunA17_Chr4g0003761 30.915 579 364 15 9 566 26 589 3.36e-81 266
Msa0501080 MtrunA17_Chr2g0331511 31.652 575 361 13 7 562 16 577 4.89e-81 266
Msa0501080 MtrunA17_Chr8g0390331 30.357 560 359 11 12 554 13 558 7.45e-81 264
Msa0501080 MtrunA17_Chr8g0362781 28.371 571 380 8 7 555 23 586 5.37e-80 262
Msa0501080 MtrunA17_Chr7g0240271 28.545 550 365 8 14 544 24 564 7.82e-80 262
Msa0501080 MtrunA17_Chr2g0331471 31.810 569 351 15 7 554 83 635 2.89e-79 263
Msa0501080 MtrunA17_Chr7g0240281 29.550 555 361 9 14 547 24 569 3.33e-76 252
Msa0501080 MtrunA17_Chr8g0362801 32.409 469 295 10 113 565 12 474 7.95e-76 248
Msa0501080 MtrunA17_Chr7g0234151 35.177 452 252 10 101 547 3 418 3.08e-73 239
Msa0501080 MtrunA17_Chr7g0234381 34.735 452 254 9 101 547 3 418 9.86e-73 238
Msa0501080 MtrunA17_Chr1g0177591 30.877 570 346 14 2 554 32 570 2.87e-72 241
Msa0501080 MtrunA17_Chr7g0261731 36.061 330 208 2 10 338 27 354 1.09e-70 231
Msa0501080 MtrunA17_Chr7g0234181 33.259 448 260 7 104 547 1 413 1.21e-70 233
Msa0501080 MtrunA17_Chr1g0157611 29.189 555 360 13 12 547 14 554 1.26e-68 232
Msa0501080 MtrunA17_Chr7g0235521 29.847 459 294 8 105 544 4 453 2.76e-68 228
Msa0501080 MtrunA17_Chr1g0157601 28.678 537 354 11 18 537 19 543 9.18e-68 229
Msa0501080 MtrunA17_Chr7g0240211 29.847 459 294 8 105 544 4 453 1.36e-67 226
Msa0501080 MtrunA17_Chr7g0240181 29.847 459 294 8 105 544 4 453 1.62e-67 226
Msa0501080 MtrunA17_Chr2g0331461 30.605 562 357 12 5 546 16 564 3.22e-67 229
Msa0501080 MtrunA17_Chr7g0240131 29.630 459 295 8 105 544 4 453 3.44e-67 226
Msa0501080 MtrunA17_Chr2g0325951 27.957 558 354 14 17 552 18 549 2.93e-66 225
Msa0501080 MtrunA17_Chr2g0326211 28.086 559 351 15 15 552 21 549 9.86e-66 223
Msa0501080 MtrunA17_Chr2g0325961 28.417 556 355 13 17 552 18 550 1.16e-65 223
Msa0501080 MtrunA17_Chr7g0240151 29.825 456 280 8 105 544 4 435 4.63e-65 219
Msa0501080 MtrunA17_Chr5g0415841 29.274 468 310 7 104 554 3 466 1.72e-64 218
Msa0501080 MtrunA17_Chr1g0157621 29.691 485 311 14 74 541 40 511 2.66e-61 212
Msa0501080 MtrunA17_Chr3g0142121 38.869 283 154 7 292 564 11 284 3.70e-58 196
Msa0501080 MtrunA17_Chr1g0177611 31.767 447 266 12 131 554 11 441 4.09e-58 200
Msa0501080 MtrunA17_Chr3g0142111 36.111 288 174 4 14 298 46 326 4.43e-55 189
Msa0501080 MtrunA17_Chr1g0177631 31.544 447 267 12 131 554 11 441 5.66e-55 192
Msa0501080 MtrunA17_Chr6g0451841 26.984 567 353 14 15 554 8 540 1.40e-54 193
Msa0501080 MtrunA17_Chr3g0112631 36.678 289 165 8 291 567 3 285 4.10e-50 174
Msa0501080 MtrunA17_Chr7g0261721 37.441 211 124 3 358 561 5 214 3.52e-36 135
Msa0501080 MtrunA17_Chr4g0060061 44.715 123 68 0 128 250 6 128 4.19e-33 123
Msa0501080 MtrunA17_Chr7g0261831 43.333 150 80 3 247 392 1 149 9.16e-31 119
Msa0501080 MtrunA17_Chr3g0112651 34.731 167 108 1 126 292 38 203 3.20e-27 109
Msa0501080 MtrunA17_Chr1g0147591 30.693 202 123 3 143 332 5 201 2.44e-24 100
Msa0501080 MtrunA17_Chr2g0326221 29.333 225 133 6 329 552 26 225 5.30e-23 97.8
Msa0501080 MtrunA17_Chr4g0060051 40.217 92 55 0 9 100 17 108 4.69e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0501080 AT1G27040.1 45.304 543 279 7 16 549 27 560 1.47e-157 462
Msa0501080 AT1G27040.2 45.304 543 279 7 16 549 23 556 2.35e-157 462
Msa0501080 AT1G27040.3 45.009 531 274 7 28 549 7 528 3.87e-154 452
Msa0501080 AT1G69850.1 42.807 570 292 5 13 555 22 584 1.98e-153 452
Msa0501080 AT1G59740.1 40.437 549 305 6 10 546 35 573 4.76e-140 419
Msa0501080 AT1G33440.1 40.172 580 315 9 3 567 25 587 3.31e-136 409
Msa0501080 AT5G62730.1 39.318 557 305 6 9 551 49 586 1.34e-132 399
Msa0501080 AT1G68570.1 40.107 561 315 6 12 556 19 574 2.77e-130 394
Msa0501080 AT5G62730.2 39.522 544 296 6 22 551 3 527 5.69e-130 390
Msa0501080 AT1G68570.2 40.367 545 304 6 28 556 5 544 6.79e-128 386
Msa0501080 AT5G01180.2 38.739 555 316 9 10 550 19 563 1.47e-126 383
Msa0501080 AT5G01180.3 38.739 555 316 9 10 550 19 563 1.47e-126 383
Msa0501080 AT5G01180.1 38.739 555 316 9 10 550 19 563 1.47e-126 383
Msa0501080 AT2G02040.1 37.365 554 327 5 10 550 35 581 3.98e-126 382
Msa0501080 AT3G54140.1 36.937 555 327 8 10 550 18 563 4.67e-123 374
Msa0501080 AT3G54140.2 36.937 555 327 8 10 550 18 563 4.67e-123 374
Msa0501080 AT1G62200.1 37.097 558 323 8 10 552 46 590 3.72e-122 372
Msa0501080 AT3G25280.1 38.547 537 289 10 16 547 21 521 2.56e-121 368
Msa0501080 AT2G26690.1 38.324 561 314 8 10 554 18 562 4.44e-121 369
Msa0501080 AT2G26690.2 38.858 543 300 8 28 554 3 529 4.99e-119 363
Msa0501080 AT3G25260.1 38.961 539 290 12 10 547 15 515 4.24e-118 359
Msa0501080 AT1G12110.1 36.444 568 340 7 10 562 21 582 4.70e-118 362
Msa0501080 AT1G62200.2 35.495 586 323 8 10 552 46 619 5.53e-118 362
Msa0501080 AT2G26690.3 39.434 530 289 8 41 554 4 517 6.23e-118 360
Msa0501080 AT1G62200.3 35.495 586 323 8 10 552 60 633 1.05e-117 362
Msa0501080 AT2G02020.1 35.688 538 306 5 10 542 36 538 1.63e-114 351
Msa0501080 AT5G46050.1 37.011 562 339 9 13 565 23 578 1.07e-111 345
Msa0501080 AT5G46040.1 35.649 547 340 7 12 550 22 564 4.25e-110 341
Msa0501080 AT5G13400.1 35.125 558 341 9 16 556 64 617 1.25e-107 336
Msa0501080 AT3G54450.1 34.464 560 327 10 14 555 10 547 2.74e-105 328
Msa0501080 AT1G69870.1 35.060 579 351 9 6 565 41 613 3.86e-105 329
Msa0501080 AT3G21670.1 35.507 552 329 6 10 550 23 558 1.33e-104 327
Msa0501080 AT2G40460.1 35.199 554 338 10 10 554 18 559 1.18e-103 324
Msa0501080 AT2G37900.1 34.342 562 337 9 6 553 26 569 2.58e-103 323
Msa0501080 AT3G53960.1 33.573 557 340 11 13 553 34 576 3.26e-100 316
Msa0501080 AT1G32450.1 31.652 575 367 9 10 564 31 599 2.58e-97 309
Msa0501080 AT1G72140.1 34.291 557 320 10 10 551 28 553 1.13e-96 305
Msa0501080 AT5G46050.2 38.085 470 277 8 104 565 3 466 1.65e-96 302
Msa0501080 AT4G21680.1 31.851 562 358 7 10 553 22 576 4.67e-95 302
Msa0501080 AT2G37900.2 34.940 498 294 8 68 553 11 490 8.42e-95 298
Msa0501080 AT2G02020.2 32.288 542 298 8 10 542 36 517 3.53e-94 298
Msa0501080 AT1G22570.1 33.892 537 313 11 11 528 25 538 1.03e-92 295
Msa0501080 AT1G22550.1 32.270 564 337 9 11 554 25 563 3.10e-92 294
Msa0501080 AT1G72125.1 32.731 553 340 10 14 553 26 559 6.28e-92 293
Msa0501080 AT1G72120.1 33.394 548 330 8 18 553 31 555 2.90e-91 291
Msa0501080 AT1G22540.1 33.454 553 338 10 10 553 24 555 4.64e-90 288
Msa0501080 AT1G22570.2 33.846 520 302 11 28 528 5 501 3.75e-89 285
Msa0501080 AT5G62680.1 31.469 572 363 9 5 555 34 597 1.39e-88 286
Msa0501080 AT1G72130.1 32.721 544 318 10 18 550 27 533 1.57e-87 281
Msa0501080 AT1G27080.1 31.952 579 356 12 1 562 1 558 4.96e-87 281
Msa0501080 AT5G19640.1 30.275 545 343 10 18 548 61 582 4.11e-84 274
Msa0501080 AT3G47960.1 31.383 564 358 9 14 555 57 613 1.54e-83 273
Msa0501080 AT3G16180.1 30.070 572 371 11 10 561 16 578 2.91e-81 266
Msa0501080 AT1G18880.1 29.947 571 363 11 19 567 22 577 7.73e-81 265
Msa0501080 AT1G27080.2 33.528 513 305 11 67 562 23 516 8.93e-81 263
Msa0501080 AT1G52190.1 29.021 572 375 11 14 563 19 581 1.14e-78 259
Msa0501080 AT3G45660.1 29.821 560 355 14 15 561 20 554 2.91e-77 254
Msa0501080 AT3G45660.3 29.821 560 355 14 15 561 20 554 2.91e-77 254
Msa0501080 AT3G45660.2 29.821 560 355 14 15 561 41 575 4.77e-77 254
Msa0501080 AT3G45650.1 29.502 522 337 8 42 554 48 547 1.97e-76 253
Msa0501080 AT1G69860.1 29.837 553 365 8 14 556 16 555 5.89e-76 251
Msa0501080 AT3G45720.1 30.280 535 334 12 42 563 45 553 6.40e-76 251
Msa0501080 AT3G45710.1 29.923 518 328 13 59 563 63 558 9.02e-75 248
Msa0501080 AT3G45700.1 30.784 536 330 15 45 563 35 546 1.89e-73 244
Msa0501080 AT1G72130.2 33.716 436 255 8 125 549 2 414 1.01e-72 239
Msa0501080 AT1G72130.3 33.716 436 255 8 125 549 2 414 1.01e-72 239
Msa0501080 AT3G45680.1 30.038 526 332 12 42 555 46 547 1.70e-72 242
Msa0501080 AT5G28470.2 27.788 565 381 9 6 555 7 559 3.24e-72 241
Msa0501080 AT3G45650.2 28.233 549 337 9 42 555 48 574 1.06e-71 241
Msa0501080 AT5G28470.1 27.611 565 380 10 6 555 7 557 3.54e-69 233
Msa0501080 AT3G45690.1 29.084 557 327 17 5 554 8 503 5.23e-68 229
Msa0501080 AT5G14940.1 27.051 573 358 15 14 556 5 547 2.12e-60 209
Msa0501080 AT3G01350.1 26.279 567 364 12 14 548 5 549 1.36e-54 194
Msa0501080 AT2G38100.2 24.587 545 339 17 44 564 2 498 5.48e-31 127
Msa0501080 AT2G38100.1 24.587 545 339 17 44 564 18 514 5.73e-31 127
Msa0501080 AT2G38100.3 24.587 545 339 17 44 564 24 520 7.18e-31 127
Msa0501080 AT5G11570.1 22.495 529 330 12 25 547 22 476 5.33e-30 123

Find 116 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGACATGTTTACACTTAT+TGG 0.112396 3_4:-41734688 Msa0501080:CDS
AATATTGTGCTTAATATTAT+TGG 0.168870 3_4:+41735087 None:intergenic
TTTACTTGGTTTGTGCTTCT+TGG 0.185331 3_4:-41734444 Msa0501080:CDS
CTTACCACAGGAGCAATATT+TGG 0.237027 3_4:-41735713 Msa0501080:CDS
AACAACCCTAACCAACTTAA+TGG 0.251379 3_4:-41736775 Msa0501080:CDS
TTGGTGTTACATTCATTAAT+TGG 0.260739 3_4:-41735694 Msa0501080:CDS
CACTTAGTACAGCAATTTCT+TGG 0.276660 3_4:-41734621 Msa0501080:CDS
CTAATTAGAGGACTTCCTTT+TGG 0.282968 3_4:+41735563 None:intergenic
ACCTGTATGATTCTAATTAG+AGG 0.292803 3_4:+41735551 None:intergenic
CACCTTCAAAGAATTGGAAT+TGG 0.306342 3_4:-41734862 Msa0501080:CDS
GAAAGTTGAGCTGCTTCCTT+TGG 0.308304 3_4:+41735764 None:intergenic
TTGGATCTTTATCATCAAAT+TGG 0.315670 3_4:+41735783 None:intergenic
CCTAGTCTTCTTTGTACCCT+TGG 0.318512 3_4:+41737024 None:intergenic
ATCTACCATATTATGTTCTA+TGG 0.326060 3_4:+41734774 None:intergenic
CAGTTCCCATTAAGTTGGTT+AGG 0.326657 3_4:+41736769 None:intergenic
TCTTTGAAGGTGTCGGATTC+CGG 0.328102 3_4:+41734873 None:intergenic
CGCTTGTTCCTAATGCAAAA+AGG 0.337412 3_4:+41735840 None:intergenic
ATCCGACACCTTCAAAGAAT+TGG 0.340962 3_4:-41734868 Msa0501080:CDS
GCTATATCTTTGCAAGGAAT+TGG 0.342659 3_4:+41735932 None:intergenic
TTAAAAGGACTGATCAATTC+AGG 0.346244 3_4:-41735325 Msa0501080:intron
ACAGTTATGAAATCCTTAAA+AGG 0.349093 3_4:-41735340 Msa0501080:CDS
TCACATTGGTTCATATGAAT+TGG 0.352432 3_4:+41735908 None:intergenic
GCTATATCAATGTTAGTTGC+TGG 0.355294 3_4:-41734826 Msa0501080:CDS
TGTAGCCATAGAACATAATA+TGG 0.362955 3_4:-41734779 Msa0501080:CDS
AAATGATGTTGACATGGTTA+AGG 0.368323 3_4:-41734380 Msa0501080:CDS
AAGGAATTGGTCTTAATTGT+TGG 0.385710 3_4:+41735945 None:intergenic
TCTTGGTGTTCTGTTGCATT+TGG 0.392399 3_4:-41734604 Msa0501080:CDS
CTCGGTCGTATAGAGGAATT+AGG 0.398446 3_4:+41734935 None:intergenic
CATTTATCTATATAAGTTCA+TGG 0.398857 3_4:-41737338 Msa0501080:five_prime_UTR
ATGAACAATAGAGGGATTAC+TGG 0.402130 3_4:+41734964 None:intergenic
ATCCAATTCCAATTCTTTGA+AGG 0.403302 3_4:+41734860 None:intergenic
ATCAATTCTTTCTATTTGCA+TGG 0.407028 3_4:-41735612 Msa0501080:CDS
CCAGGGAATCTGCAGAAGTA+TGG 0.408046 3_4:-41737055 Msa0501080:intron
AGCTTAATAACTTATTTCAC+TGG 0.415965 3_4:-41736828 Msa0501080:CDS
AAACAGAAAACTTCAAATTC+CGG 0.416524 3_4:-41735408 Msa0501080:CDS
TTAATATTATTGGTAGCATT+CGG 0.424737 3_4:+41735097 None:intergenic
AACCTTGGACACAAACATCT+TGG 0.425740 3_4:-41735013 Msa0501080:CDS
TTGTGTTCTGTTTGCATGCA+TGG 0.432835 3_4:-41736685 Msa0501080:CDS
AACCAATGTGAACCTGCTAA+TGG 0.439088 3_4:-41735896 Msa0501080:CDS
GCTGCTTGGCTTCCATTAGC+AGG 0.439732 3_4:+41735884 None:intergenic
ATCAAATTGGTCAGCTCCTA+AGG 0.441536 3_4:+41735796 None:intergenic
ACTTCAAATTCCGGAGAATA+CGG 0.442012 3_4:-41735399 Msa0501080:CDS
TCAAAGAATTGGAATTGGAT+TGG 0.444870 3_4:-41734857 Msa0501080:CDS
TTCTATGCAGAAAGTTCAGC+TGG 0.449535 3_4:-41734652 Msa0501080:CDS
ACCTTGGACACAAACATCTT+GGG 0.453201 3_4:-41735012 Msa0501080:CDS
TGCATTTCTTCCGTATTCTC+CGG 0.455266 3_4:+41735389 None:intergenic
GAAGGTGTCGGATTCCGGTT+GGG 0.455684 3_4:+41734878 None:intergenic
ACAACCCTAACCAACTTAAT+GGG 0.457460 3_4:-41736774 Msa0501080:CDS
TACAGAAACAATACTCCAAA+AGG 0.460204 3_4:-41735578 Msa0501080:CDS
GGAAACGTGCTTGAACTGTT+AGG 0.460595 3_4:+41735966 None:intergenic
TAGTGTCTTCTTTGATCTGA+AGG 0.461038 3_4:+41737276 None:intergenic
CAAGCAGCTATACTTTATAC+AGG 0.461298 3_4:-41735869 Msa0501080:CDS
AGTTCCCATTAAGTTGGTTA+GGG 0.462802 3_4:+41736770 None:intergenic
AAAAGCAGTTCCCATTAAGT+TGG 0.463975 3_4:+41736764 None:intergenic
TTCTTAGATAGAGCAGCAGT+TGG 0.471072 3_4:-41735186 Msa0501080:CDS
AGGACAAACATGAACAATAG+AGG 0.473937 3_4:+41734955 None:intergenic
GTAGTAACCAAGGATGGTAT+TGG 0.475462 3_4:-41735667 Msa0501080:CDS
GTTTGCATGCATGGAATTGT+TGG 0.479572 3_4:-41736676 Msa0501080:intron
AAAGCAGCTTTACCCGCCTT+AGG 0.482169 3_4:-41735812 Msa0501080:CDS
TTCCAATTCTTTGAAGGTGT+CGG 0.483475 3_4:+41734866 None:intergenic
AGTTATTAAGCTCACTGCAT+TGG 0.489046 3_4:+41736839 None:intergenic
TCCTCTAATTAGAATCATAC+AGG 0.495772 3_4:-41735552 Msa0501080:intron
TCAATTCTTTCTATTTGCAT+GGG 0.499333 3_4:-41735611 Msa0501080:CDS
TAAAACTCCAATACCATCCT+TGG 0.500711 3_4:+41735660 None:intergenic
TGAAGGTGTCGGATTCCGGT+TGG 0.505122 3_4:+41734877 None:intergenic
CAAATATTGCTCCTGTGGTA+AGG 0.505900 3_4:+41735714 None:intergenic
TTTCTGATACATATTTGTCT+AGG 0.508442 3_4:-41736716 Msa0501080:CDS
ATTACTGGGAGGGAGGGTCC+TGG 0.515478 3_4:+41734979 None:intergenic
TTAGATAGAGCAGCAGTTGG+AGG 0.517849 3_4:-41735183 Msa0501080:CDS
CTGTGATTCTTCGAATAAGC+GGG 0.518290 3_4:+41734905 None:intergenic
TTATTGGTAGCATTCGGACT+AGG 0.518823 3_4:+41735103 None:intergenic
ATCTTGGGATTCAAAATGCC+AGG 0.520418 3_4:-41734997 Msa0501080:CDS
GAGGAAACAGTACAGGATCA+TGG 0.528992 3_4:-41735164 Msa0501080:CDS
AGAATCACAGGAATCCCAAC+CGG 0.532778 3_4:-41734892 Msa0501080:CDS
TCCCAAGATGTTTGTGTCCA+AGG 0.533877 3_4:+41735011 None:intergenic
TTCCATTAGCAGGTTCACAT+TGG 0.538946 3_4:+41735894 None:intergenic
CCAAGGGTACAAAGAAGACT+AGG 0.545747 3_4:-41737024 Msa0501080:CDS
CATACAACAAAGCACAACCT+TGG 0.548442 3_4:-41735028 Msa0501080:CDS
GCAGTTGGAGGAAACAGTAC+AGG 0.551246 3_4:-41735171 Msa0501080:CDS
AGAGGGATTACTGGGAGGGA+GGG 0.552016 3_4:+41734973 None:intergenic
GATAAATGTGCCGCAAGTTG+TGG 0.555661 3_4:+41737353 None:intergenic
CCGCTTATTCGAAGAATCAC+AGG 0.558543 3_4:-41734904 Msa0501080:CDS
GCTTAATAACTTATTTCACT+GGG 0.561279 3_4:-41736827 Msa0501080:CDS
TAGAGGGATTACTGGGAGGG+AGG 0.563260 3_4:+41734972 None:intergenic
CAAAGTGAGTGGTGGTTGGT+TGG 0.564096 3_4:-41734545 Msa0501080:CDS
CTTACTTCATCCACAACTTG+CGG 0.568581 3_4:-41737363 Msa0501080:five_prime_UTR
CAATAGAGGGATTACTGGGA+GGG 0.581806 3_4:+41734969 None:intergenic
TTCTTACTTAGCCTTACCAC+AGG 0.583254 3_4:-41735725 Msa0501080:CDS
TTAACAAAGTGAGTGGTGGT+TGG 0.583530 3_4:-41734549 Msa0501080:CDS
AATTGGTCAGCTCCTAAGGC+GGG 0.585024 3_4:+41735800 None:intergenic
TATGGAAGGGTTAGAGAACA+TGG 0.587825 3_4:-41736871 Msa0501080:CDS
CTGTATAAAGTATAGCTGCT+TGG 0.590146 3_4:+41735870 None:intergenic
GGACAAACATGAACAATAGA+GGG 0.591843 3_4:+41734956 None:intergenic
TACAAGCACAGTGGTTGTTG+AGG 0.592321 3_4:-41734575 Msa0501080:CDS
ATTGGTGCTATATCTTTGCA+AGG 0.603950 3_4:+41735926 None:intergenic
ATTTGATGATAAAGATCCAA+AGG 0.609608 3_4:-41735780 Msa0501080:CDS
GGATTAGTAGTAACCAAGGA+TGG 0.611883 3_4:-41735673 Msa0501080:CDS
TGAACAATAGAGGGATTACT+GGG 0.612071 3_4:+41734965 None:intergenic
AACACCAAATATTGCTCCTG+TGG 0.613994 3_4:+41735709 None:intergenic
TGATTTAAATGATGTTGACA+TGG 0.624317 3_4:-41734386 Msa0501080:CDS
AATTGGATTAGTAGTAACCA+AGG 0.634539 3_4:-41735677 Msa0501080:CDS
CCTGTGATTCTTCGAATAAG+CGG 0.644958 3_4:+41734904 None:intergenic
GAAGTATGGCTACACAACCA+AGG 0.645696 3_4:-41737041 Msa0501080:CDS
AAATTGGTCAGCTCCTAAGG+CGG 0.648583 3_4:+41735799 None:intergenic
AAGTATGGCTACACAACCAA+GGG 0.655982 3_4:-41737040 Msa0501080:CDS
ATCAAAGAAGACACTAACAA+TGG 0.660539 3_4:-41737269 Msa0501080:intron
GAAATTAATCCACCTAGGAG+TGG 0.661331 3_4:+41736735 None:intergenic
CAACATCATTTAAATCACCT+AGG 0.666986 3_4:+41734392 None:intergenic
TTGGTATAGATACAAAACAG+TGG 0.674197 3_4:-41734425 Msa0501080:CDS
TATCAGAAATTAATCCACCT+AGG 0.677447 3_4:+41736730 None:intergenic
AGGGTACAAAGAAGACTAGG+AGG 0.688134 3_4:-41737021 Msa0501080:CDS
GAGGTAGTTAACAAAGTGAG+TGG 0.707459 3_4:-41734556 Msa0501080:CDS
ACAATAGAGGGATTACTGGG+AGG 0.708379 3_4:+41734968 None:intergenic
ACAGTGGAAGACAAACACCT+AGG 0.710549 3_4:-41734409 Msa0501080:CDS
GTAGTTAACAAAGTGAGTGG+TGG 0.723635 3_4:-41734553 Msa0501080:CDS
TGGTTACTTTACAAGCACAG+TGG 0.730755 3_4:-41734584 Msa0501080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGACATTATAAAAATAAATT+TGG + chr3_4:41734415-41734434 None:intergenic 10.0%
!!! AAACATTTTTAACATATAAA+AGG + chr3_4:41734891-41734910 None:intergenic 10.0%
!!! ATTTTTAATGTTCTTCAAAA+TGG - chr3_4:41734609-41734628 Msa0501080:CDS 15.0%
!! TCAATTTCTTAACTTATTAT+AGG - chr3_4:41734651-41734670 Msa0501080:CDS 15.0%
!! TAACTTATTATAGGTTATAT+TGG - chr3_4:41734660-41734679 Msa0501080:CDS 15.0%
!!! TAAATTGAAATTCCAATTTT+TGG - chr3_4:41734924-41734943 Msa0501080:CDS 15.0%
!! ATAAAAATGAGTTTAAATGA+GGG + chr3_4:41735373-41735392 None:intergenic 15.0%
!! AATAAAAATGAGTTTAAATG+AGG + chr3_4:41735374-41735393 None:intergenic 15.0%
!! TGTTTATAATGATTAATCAT+GGG + chr3_4:41735553-41735572 None:intergenic 15.0%
!! TTGTTTATAATGATTAATCA+TGG + chr3_4:41735554-41735573 None:intergenic 15.0%
!!! AACTAATTTTTTTAATTGCA+GGG - chr3_4:41735827-41735846 Msa0501080:CDS 15.0%
!! AAAATGTTATTGTACTTTAA+AGG - chr3_4:41736332-41736351 Msa0501080:intron 15.0%
!! AAATGTTATTGTACTTTAAA+GGG - chr3_4:41736333-41736352 Msa0501080:intron 15.0%
!! AATATTGTGCTTAATATTAT+TGG + chr3_4:41736741-41736760 None:intergenic 15.0%
!!! ATTTGGTTACATTTTTGTAA+GGG + chr3_4:41734398-41734417 None:intergenic 20.0%
!!! AATTTGGTTACATTTTTGTA+AGG + chr3_4:41734399-41734418 None:intergenic 20.0%
!! CATTTATCTATATAAGTTCA+TGG - chr3_4:41734487-41734506 Msa0501080:CDS 20.0%
!!! GCATATGAGATTTTTTTAAA+AGG - chr3_4:41735790-41735809 Msa0501080:CDS 20.0%
!!! CAACTAATTTTTTTAATTGC+AGG - chr3_4:41735826-41735845 Msa0501080:CDS 20.0%
!!! AACTTTCAAGCTTTTTTAAT+TGG - chr3_4:41736077-41736096 Msa0501080:intron 20.0%
!!! ATTTAATTTGTTGAACTTTC+AGG - chr3_4:41736375-41736394 Msa0501080:intron 20.0%
!!! TTAATATTATTGGTAGCATT+CGG + chr3_4:41736731-41736750 None:intergenic 20.0%
!!! TGTAAACTTTGTATTTTACT+TGG - chr3_4:41737367-41737386 Msa0501080:five_prime_UTR 20.0%
! TGAAGAACATTAAAAATGTG+TGG + chr3_4:41734606-41734625 None:intergenic 25.0%
!! ATTGAATCATTTTCCTTAAC+TGG + chr3_4:41734636-41734655 None:intergenic 25.0%
! AGCTTAATAACTTATTTCAC+TGG - chr3_4:41734997-41735016 Msa0501080:CDS 25.0%
! GCTTAATAACTTATTTCACT+GGG - chr3_4:41734998-41735017 Msa0501080:CDS 25.0%
! TTTCTGATACATATTTGTCT+AGG - chr3_4:41735109-41735128 Msa0501080:CDS 25.0%
!! TTGATTCTCAAATGTGTTTT+CGG + chr3_4:41735257-41735276 None:intergenic 25.0%
! TAATTGAAGGTGAATGTTTA+AGG - chr3_4:41735594-41735613 Msa0501080:CDS 25.0%
! TAAAAAAATCTCATATGCGA+CGG + chr3_4:41735788-41735807 None:intergenic 25.0%
! TTGGATCTTTATCATCAAAT+TGG + chr3_4:41736045-41736064 None:intergenic 25.0%
!! ATTTGATGATAAAGATCCAA+AGG - chr3_4:41736045-41736064 Msa0501080:intron 25.0%
!!! TTGGTGTTACATTCATTAAT+TGG - chr3_4:41736131-41736150 Msa0501080:intron 25.0%
! ATCAATTCTTTCTATTTGCA+TGG - chr3_4:41736213-41736232 Msa0501080:intron 25.0%
! TCAATTCTTTCTATTTGCAT+GGG - chr3_4:41736214-41736233 Msa0501080:intron 25.0%
! AAACAGAAAACTTCAAATTC+CGG - chr3_4:41736417-41736436 Msa0501080:intron 25.0%
! ACAGTTATGAAATCCTTAAA+AGG - chr3_4:41736485-41736504 Msa0501080:intron 25.0%
! ATCTACCATATTATGTTCTA+TGG + chr3_4:41737054-41737073 None:intergenic 25.0%
!!! GGTTTTCAATATGCTATTTT+TGG - chr3_4:41737110-41737129 Msa0501080:intron 25.0%
!!! ACAAGCTTAACTACTTTTAT+TGG - chr3_4:41737324-41737343 Msa0501080:five_prime_UTR 25.0%
! TGATTTAAATGATGTTGACA+TGG - chr3_4:41737439-41737458 Msa0501080:five_prime_UTR 25.0%
ATCAAAGAAGACACTAACAA+TGG - chr3_4:41734556-41734575 Msa0501080:CDS 30.0%
! AGTGTTCTAAGCAGATAATT+CGG + chr3_4:41734728-41734747 None:intergenic 30.0%
TATGGTAAGAACTTGAAACT+TGG - chr3_4:41734849-41734868 Msa0501080:CDS 30.0%
ACATATAAAAGGACACACAT+GGG + chr3_4:41734880-41734899 None:intergenic 30.0%
AACATATAAAAGGACACACA+TGG + chr3_4:41734881-41734900 None:intergenic 30.0%
! TTTTGTTAAGCTGAAGTTCA+TGG + chr3_4:41735025-41735044 None:intergenic 30.0%
TATCAGAAATTAATCCACCT+AGG + chr3_4:41735098-41735117 None:intergenic 30.0%
CATTCACCTTCAATTATTGA+AGG + chr3_4:41735590-41735609 None:intergenic 30.0%
!! AAGGAATTGGTCTTAATTGT+TGG + chr3_4:41735883-41735902 None:intergenic 30.0%
!! TCACATTGGTTCATATGAAT+TGG + chr3_4:41735920-41735939 None:intergenic 30.0%
! TTCCTAATGCAAAAAGGTAT+AGG + chr3_4:41735982-41736001 None:intergenic 30.0%
!! AATTGGATTAGTAGTAACCA+AGG - chr3_4:41736148-41736167 Msa0501080:intron 30.0%
TACAGAAACAATACTCCAAA+AGG - chr3_4:41736247-41736266 Msa0501080:intron 30.0%
TCCTCTAATTAGAATCATAC+AGG - chr3_4:41736273-41736292 Msa0501080:intron 30.0%
ACCTGTATGATTCTAATTAG+AGG + chr3_4:41736277-41736296 None:intergenic 30.0%
GAAGCATGTAGAAAAAAATG+AGG + chr3_4:41736312-41736331 None:intergenic 30.0%
!!! TTGAAGTTTTCTGTTTCTGA+AGG + chr3_4:41736413-41736432 None:intergenic 30.0%
! TGAATTGATCAGTCCTTTTA+AGG + chr3_4:41736501-41736520 None:intergenic 30.0%
TTAAAAGGACTGATCAATTC+AGG - chr3_4:41736500-41736519 Msa0501080:intron 30.0%
ATCCAATTCCAATTCTTTGA+AGG + chr3_4:41736968-41736987 None:intergenic 30.0%
TCAAAGAATTGGAATTGGAT+TGG - chr3_4:41736968-41736987 Msa0501080:intron 30.0%
TGTAGCCATAGAACATAATA+TGG - chr3_4:41737046-41737065 Msa0501080:CDS 30.0%
CAAAAAACACTCATTGGTAA+AGG + chr3_4:41737086-41737105 None:intergenic 30.0%
!!! CTTTACCAATGAGTGTTTTT+TGG - chr3_4:41737084-41737103 Msa0501080:intron 30.0%
TTGGTATAGATACAAAACAG+TGG - chr3_4:41737400-41737419 Msa0501080:five_prime_UTR 30.0%
CAACATCATTTAAATCACCT+AGG + chr3_4:41737436-41737455 None:intergenic 30.0%
AAATGATGTTGACATGGTTA+AGG - chr3_4:41737445-41737464 Msa0501080:five_prime_UTR 30.0%
TAGTGTCTTCTTTGATCTGA+AGG + chr3_4:41734552-41734571 None:intergenic 35.0%
TCTTCAAAATGGACCAGTTA+AGG - chr3_4:41734620-41734639 Msa0501080:CDS 35.0%
!! ATAGGTTATATTGGTGTCAC+TGG - chr3_4:41734669-41734688 Msa0501080:CDS 35.0%
TTCTAAGCAGATAATTCGGT+TGG + chr3_4:41734724-41734743 None:intergenic 35.0%
! AACTTGTTTGATTACTTGCC+AGG - chr3_4:41734752-41734771 Msa0501080:CDS 35.0%
ACTTGTTTGATTACTTGCCA+GGG - chr3_4:41734753-41734772 Msa0501080:CDS 35.0%
!! AGAGCTGCACTTTTTGTATA+TGG - chr3_4:41734831-41734850 Msa0501080:CDS 35.0%
AGTTATTAAGCTCACTGCAT+TGG + chr3_4:41734989-41735008 None:intergenic 35.0%
AACAACCCTAACCAACTTAA+TGG - chr3_4:41735050-41735069 Msa0501080:CDS 35.0%
ACAACCCTAACCAACTTAAT+GGG - chr3_4:41735051-41735070 Msa0501080:CDS 35.0%
!! AGTTCCCATTAAGTTGGTTA+GGG + chr3_4:41735058-41735077 None:intergenic 35.0%
AAAAGCAGTTCCCATTAAGT+TGG + chr3_4:41735064-41735083 None:intergenic 35.0%
CTATCTTCACTTGCATTTCA+CGG - chr3_4:41735394-41735413 Msa0501080:CDS 35.0%
TGAGAGCCTTCAATAATTGA+AGG - chr3_4:41735581-41735600 Msa0501080:CDS 35.0%
CGGTTGTAAAATAATCGCTA+TGG + chr3_4:41735768-41735787 None:intergenic 35.0%
GCTATATCTTTGCAAGGAAT+TGG + chr3_4:41735896-41735915 None:intergenic 35.0%
!! ATTGGTGCTATATCTTTGCA+AGG + chr3_4:41735902-41735921 None:intergenic 35.0%
CTGTATAAAGTATAGCTGCT+TGG + chr3_4:41735958-41735977 None:intergenic 35.0%
CAAGCAGCTATACTTTATAC+AGG - chr3_4:41735956-41735975 Msa0501080:CDS 35.0%
! CTTTTTGCATTAGGAACAAG+CGG - chr3_4:41735986-41736005 Msa0501080:intron 35.0%
TAAAACTCCAATACCATCCT+TGG + chr3_4:41736168-41736187 None:intergenic 35.0%
! CTAATTAGAGGACTTCCTTT+TGG + chr3_4:41736265-41736284 None:intergenic 35.0%
ACTTCAAATTCCGGAGAATA+CGG - chr3_4:41736426-41736445 Msa0501080:intron 35.0%
GAGATCCATGAAAAAGAAAG+AGG - chr3_4:41736460-41736479 Msa0501080:intron 35.0%
!! TGTCTCCTCTTTCTTTTTCA+TGG + chr3_4:41736468-41736487 None:intergenic 35.0%
TGAACAATAGAGGGATTACT+GGG + chr3_4:41736863-41736882 None:intergenic 35.0%
ATGAACAATAGAGGGATTAC+TGG + chr3_4:41736864-41736883 None:intergenic 35.0%
GGACAAACATGAACAATAGA+GGG + chr3_4:41736872-41736891 None:intergenic 35.0%
AGGACAAACATGAACAATAG+AGG + chr3_4:41736873-41736892 None:intergenic 35.0%
! TTCCAATTCTTTGAAGGTGT+CGG + chr3_4:41736962-41736981 None:intergenic 35.0%
CACCTTCAAAGAATTGGAAT+TGG - chr3_4:41736963-41736982 Msa0501080:intron 35.0%
GCTATATCAATGTTAGTTGC+TGG - chr3_4:41736999-41737018 Msa0501080:CDS 35.0%
!!! ACCAATGAGTGTTTTTTGGT+TGG - chr3_4:41737088-41737107 Msa0501080:intron 35.0%
!!! CCAATGAGTGTTTTTTGGTT+GGG - chr3_4:41737089-41737108 Msa0501080:intron 35.0%
GCAGACATGTTTACACTTAT+TGG - chr3_4:41737137-41737156 Msa0501080:intron 35.0%
CACTTAGTACAGCAATTTCT+TGG - chr3_4:41737204-41737223 Msa0501080:intron 35.0%
!! TTTACTTGGTTTGTGCTTCT+TGG - chr3_4:41737381-41737400 Msa0501080:five_prime_UTR 35.0%
CTTACTTCATCCACAACTTG+CGG - chr3_4:41734462-41734481 Msa0501080:CDS 40.0%
AAGTATGGCTACACAACCAA+GGG - chr3_4:41734785-41734804 Msa0501080:CDS 40.0%
CCATAGCTGCATCCAAAAAT+TGG + chr3_4:41734939-41734958 None:intergenic 40.0%
!! CCAATTTTTGGATGCAGCTA+TGG - chr3_4:41734936-41734955 Msa0501080:CDS 40.0%
! TTTTTGGATGCAGCTATGGA+AGG - chr3_4:41734940-41734959 Msa0501080:CDS 40.0%
! TTTTGGATGCAGCTATGGAA+GGG - chr3_4:41734941-41734960 Msa0501080:CDS 40.0%
TATGGAAGGGTTAGAGAACA+TGG - chr3_4:41734954-41734973 Msa0501080:CDS 40.0%
!! CAGTTCCCATTAAGTTGGTT+AGG + chr3_4:41735059-41735078 None:intergenic 40.0%
!!! GCTTTTTTACTACCACTCCT+AGG - chr3_4:41735078-41735097 Msa0501080:CDS 40.0%
! TTTTTACTACCACTCCTAGG+TGG - chr3_4:41735081-41735100 Msa0501080:CDS 40.0%
GAAATTAATCCACCTAGGAG+TGG + chr3_4:41735093-41735112 None:intergenic 40.0%
TTGTGTTCTGTTTGCATGCA+TGG - chr3_4:41735140-41735159 Msa0501080:CDS 40.0%
GTTTGCATGCATGGAATTGT+TGG - chr3_4:41735149-41735168 Msa0501080:CDS 40.0%
TCCCTACATTACCAACCATA+GGG + chr3_4:41735440-41735459 None:intergenic 40.0%
ATCCCTACATTACCAACCAT+AGG + chr3_4:41735441-41735460 None:intergenic 40.0%
!! TTGGTAATGTAGGGATAGCT+AGG - chr3_4:41735445-41735464 Msa0501080:intron 40.0%
! TGGTAATGTAGGGATAGCTA+GGG - chr3_4:41735446-41735465 Msa0501080:intron 40.0%
AACCAATGTGAACCTGCTAA+TGG - chr3_4:41735929-41735948 Msa0501080:CDS 40.0%
TTCCATTAGCAGGTTCACAT+TGG + chr3_4:41735934-41735953 None:intergenic 40.0%
! GGCCTATACCTTTTTGCATT+AGG - chr3_4:41735977-41735996 Msa0501080:CDS 40.0%
CGCTTGTTCCTAATGCAAAA+AGG + chr3_4:41735988-41736007 None:intergenic 40.0%
ATCAAATTGGTCAGCTCCTA+AGG + chr3_4:41736032-41736051 None:intergenic 40.0%
!! TTCTTACTTAGCCTTACCAC+AGG - chr3_4:41736100-41736119 Msa0501080:intron 40.0%
CAAATATTGCTCCTGTGGTA+AGG + chr3_4:41736114-41736133 None:intergenic 40.0%
CTTACCACAGGAGCAATATT+TGG - chr3_4:41736112-41736131 Msa0501080:intron 40.0%
AACACCAAATATTGCTCCTG+TGG + chr3_4:41736119-41736138 None:intergenic 40.0%
! GGATTAGTAGTAACCAAGGA+TGG - chr3_4:41736152-41736171 Msa0501080:intron 40.0%
GTAGTAACCAAGGATGGTAT+TGG - chr3_4:41736158-41736177 Msa0501080:intron 40.0%
TGCATTTCTTCCGTATTCTC+CGG + chr3_4:41736439-41736458 None:intergenic 40.0%
TTCTTAGATAGAGCAGCAGT+TGG - chr3_4:41736639-41736658 Msa0501080:intron 40.0%
! TTATTGGTAGCATTCGGACT+AGG + chr3_4:41736725-41736744 None:intergenic 40.0%
CATACAACAAAGCACAACCT+TGG - chr3_4:41736797-41736816 Msa0501080:CDS 40.0%
AACCTTGGACACAAACATCT+TGG - chr3_4:41736812-41736831 Msa0501080:CDS 40.0%
ACCTTGGACACAAACATCTT+GGG - chr3_4:41736813-41736832 Msa0501080:CDS 40.0%
ATCTTGGGATTCAAAATGCC+AGG - chr3_4:41736828-41736847 Msa0501080:CDS 40.0%
ACAAAAACTCGGTCGTATAG+AGG + chr3_4:41736900-41736919 None:intergenic 40.0%
GAATAAGCGGGACAAAAACT+CGG + chr3_4:41736911-41736930 None:intergenic 40.0%
CTGTGATTCTTCGAATAAGC+GGG + chr3_4:41736923-41736942 None:intergenic 40.0%
CCTGTGATTCTTCGAATAAG+CGG + chr3_4:41736924-41736943 None:intergenic 40.0%
ATCCGACACCTTCAAAGAAT+TGG - chr3_4:41736957-41736976 Msa0501080:intron 40.0%
CCCAACCAAAAAACACTCAT+TGG + chr3_4:41737092-41737111 None:intergenic 40.0%
TTCTATGCAGAAAGTTCAGC+TGG - chr3_4:41737173-41737192 Msa0501080:intron 40.0%
!! TCTTGGTGTTCTGTTGCATT+TGG - chr3_4:41737221-41737240 Msa0501080:intron 40.0%
! TGGTTACTTTACAAGCACAG+TGG - chr3_4:41737241-41737260 Msa0501080:intron 40.0%
GAGGTAGTTAACAAAGTGAG+TGG - chr3_4:41737269-41737288 Msa0501080:intron 40.0%
GTAGTTAACAAAGTGAGTGG+TGG - chr3_4:41737272-41737291 Msa0501080:exon 40.0%
TTAACAAAGTGAGTGGTGGT+TGG - chr3_4:41737276-41737295 Msa0501080:five_prime_UTR 40.0%
GATAAATGTGCCGCAAGTTG+TGG + chr3_4:41734475-41734494 None:intergenic 45.0%
GAAGTATGGCTACACAACCA+AGG - chr3_4:41734784-41734803 Msa0501080:CDS 45.0%
! CCTAGTCTTCTTTGTACCCT+TGG + chr3_4:41734804-41734823 None:intergenic 45.0%
! CCAAGGGTACAAAGAAGACT+AGG - chr3_4:41734801-41734820 Msa0501080:CDS 45.0%
AGGGTACAAAGAAGACTAGG+AGG - chr3_4:41734804-41734823 Msa0501080:CDS 45.0%
TTGCATTTCACGGTACAGCA+AGG - chr3_4:41735404-41735423 Msa0501080:CDS 45.0%
!! GCCCTATGGTTGGTAATGTA+GGG - chr3_4:41735436-41735455 Msa0501080:intron 45.0%
GTACTTTCAGCATCATGACG+TGG - chr3_4:41735522-41735541 Msa0501080:intron 45.0%
GGAAACGTGCTTGAACTGTT+AGG + chr3_4:41735862-41735881 None:intergenic 45.0%
AAATTGGTCAGCTCCTAAGG+CGG + chr3_4:41736029-41736048 None:intergenic 45.0%
GAAAGTTGAGCTGCTTCCTT+TGG + chr3_4:41736064-41736083 None:intergenic 45.0%
TTAGATAGAGCAGCAGTTGG+AGG - chr3_4:41736642-41736661 Msa0501080:intron 45.0%
GAGGAAACAGTACAGGATCA+TGG - chr3_4:41736661-41736680 Msa0501080:intron 45.0%
TCCCAAGATGTTTGTGTCCA+AGG + chr3_4:41736817-41736836 None:intergenic 45.0%
CAATAGAGGGATTACTGGGA+GGG + chr3_4:41736859-41736878 None:intergenic 45.0%
ACAATAGAGGGATTACTGGG+AGG + chr3_4:41736860-41736879 None:intergenic 45.0%
CTCGGTCGTATAGAGGAATT+AGG + chr3_4:41736893-41736912 None:intergenic 45.0%
CCGCTTATTCGAAGAATCAC+AGG - chr3_4:41736921-41736940 Msa0501080:intron 45.0%
AGAATCACAGGAATCCCAAC+CGG - chr3_4:41736933-41736952 Msa0501080:intron 45.0%
!! TCTTTGAAGGTGTCGGATTC+CGG + chr3_4:41736955-41736974 None:intergenic 45.0%
TACAAGCACAGTGGTTGTTG+AGG - chr3_4:41737250-41737269 Msa0501080:intron 45.0%
ACAGTGGAAGACAAACACCT+AGG - chr3_4:41737416-41737435 Msa0501080:five_prime_UTR 45.0%
CCATACTTCTGCAGATTCCC+TGG + chr3_4:41734773-41734792 None:intergenic 50.0%
CCAGGGAATCTGCAGAAGTA+TGG - chr3_4:41734770-41734789 Msa0501080:CDS 50.0%
ACGGTACAGCAAGGTGAAGA+GGG - chr3_4:41735413-41735432 Msa0501080:CDS 50.0%
!! GGCCCTATGGTTGGTAATGT+AGG - chr3_4:41735435-41735454 Msa0501080:intron 50.0%
AAAGCAGCTTTACCCGCCTT+AGG - chr3_4:41736013-41736032 Msa0501080:intron 50.0%
AATTGGTCAGCTCCTAAGGC+GGG + chr3_4:41736028-41736047 None:intergenic 50.0%
GCAGTTGGAGGAAACAGTAC+AGG - chr3_4:41736654-41736673 Msa0501080:intron 50.0%
CAAAGTGAGTGGTGGTTGGT+TGG - chr3_4:41737280-41737299 Msa0501080:five_prime_UTR 50.0%
CACGGTACAGCAAGGTGAAG+AGG - chr3_4:41735412-41735431 Msa0501080:CDS 55.0%
CGGTACAGCAAGGTGAAGAG+GGG - chr3_4:41735414-41735433 Msa0501080:CDS 55.0%
GCTGCTTGGCTTCCATTAGC+AGG + chr3_4:41735944-41735963 None:intergenic 55.0%
AGAGGGATTACTGGGAGGGA+GGG + chr3_4:41736855-41736874 None:intergenic 55.0%
TAGAGGGATTACTGGGAGGG+AGG + chr3_4:41736856-41736875 None:intergenic 55.0%
!! GAAGGTGTCGGATTCCGGTT+GGG + chr3_4:41736950-41736969 None:intergenic 55.0%
!! TGAAGGTGTCGGATTCCGGT+TGG + chr3_4:41736951-41736970 None:intergenic 55.0%
CAAGGTGAAGAGGGGCCCTA+TGG - chr3_4:41735422-41735441 Msa0501080:CDS 60.0%
GTGAAGAGGGGCCCTATGGT+TGG - chr3_4:41735426-41735445 Msa0501080:CDS 60.0%
ATTACTGGGAGGGAGGGTCC+TGG + chr3_4:41736849-41736868 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41734375 41737472 41734375 ID=Msa0501080;Name=Msa0501080
chr3_4 mRNA 41734375 41737472 41734375 ID=Msa0501080-mRNA-1;Parent=Msa0501080;Name=Msa0501080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|0.83|1|0.8|0.66|6|0|568
chr3_4 exon 41734375 41735209 41734375 ID=Msa0501080-mRNA-1:exon:8796;Parent=Msa0501080-mRNA-1
chr3_4 exon 41735326 41735450 41735326 ID=Msa0501080-mRNA-1:exon:8795;Parent=Msa0501080-mRNA-1
chr3_4 exon 41735553 41735999 41735553 ID=Msa0501080-mRNA-1:exon:8794;Parent=Msa0501080-mRNA-1
chr3_4 exon 41736677 41736894 41736677 ID=Msa0501080-mRNA-1:exon:8793;Parent=Msa0501080-mRNA-1
chr3_4 exon 41736995 41737073 41736995 ID=Msa0501080-mRNA-1:exon:8792;Parent=Msa0501080-mRNA-1
chr3_4 exon 41737270 41737472 41737270 ID=Msa0501080-mRNA-1:exon:8791;Parent=Msa0501080-mRNA-1
chr3_4 five_prime_UTR 41737273 41737472 41737273 ID=Msa0501080-mRNA-1:five_prime_utr;Parent=Msa0501080-mRNA-1
chr3_4 CDS 41737270 41737272 41737270 ID=Msa0501080-mRNA-1:cds;Parent=Msa0501080-mRNA-1
chr3_4 CDS 41736995 41737073 41736995 ID=Msa0501080-mRNA-1:cds;Parent=Msa0501080-mRNA-1
chr3_4 CDS 41736677 41736894 41736677 ID=Msa0501080-mRNA-1:cds;Parent=Msa0501080-mRNA-1
chr3_4 CDS 41735553 41735999 41735553 ID=Msa0501080-mRNA-1:cds;Parent=Msa0501080-mRNA-1
chr3_4 CDS 41735326 41735450 41735326 ID=Msa0501080-mRNA-1:cds;Parent=Msa0501080-mRNA-1
chr3_4 CDS 41734375 41735209 41734375 ID=Msa0501080-mRNA-1:cds;Parent=Msa0501080-mRNA-1
Gene Sequence

>Msa0501080

ATGGGAATCTGCAGAAGTATGGCTACACAACCAAGGGTACAAAGAAGACTAGGAGGAAAAAGAGCTGCACTTTTTGTATATGCTATGGAAGGGTTAGAGAACATGGCTTTTGTTGCCAATGCAGTGAGCTTAATAACTTATTTCACTGGGTCCATGAACTTCAGCTTAACAAAATCAGCAACAACCCTAACCAACTTAATGGGAACTGCTTTTTTACTACCACTCCTAGGTGGATTAATTTCTGATACATATTTGTCTAGGTTCAAGACTTGTGTTCTGTTTGCATGCATGGAATTGTTGGGATATAGTATCCTAACAGTTCAAGCACGTTTCCAACAATTAAGACCAATTCCTTGCAAAGATATAGCACCAATTCATATGAACCAATGTGAACCTGCTAATGGAAGCCAAGCAGCTATACTTTATACAGGCCTATACCTTTTTGCATTAGGAACAAGCGGTGTTAAAGCAGCTTTACCCGCCTTAGGAGCTGACCAATTTGATGATAAAGATCCAAAGGAAGCAGCTCAACTTTCAAGCTTTTTTAATTGGTTCTTACTTAGCCTTACCACAGGAGCAATATTTGGTGTTACATTCATTAATTGGATTAGTAGTAACCAAGGATGGTATTGGAGTTTTACTGTATGCACTATAGCAGTCTTTCTATCAATTCTTTCTATTTGCATGGGCAAGTCATTCTACAGAAACAATACTCCAAAAGGAAGTCCTCTAATTAGAATCATACAGGTGTTTGTAGCAGCCTTCAGAAACAGAAAACTTCAAATTCCGGAGAATACGGAAGAAATGCATGAGATCCATGAAAAAGAAAGAGGAGACAGTTATGAAATCCTTAAAAGGACTGATCAATTCAGATTCTTAGATAGAGCAGCAGTTGGAGGAAACAGTACAGGATCATGGAATCTTTGCACAGTGACACAAGTAGAAGAAACAAAAATCCTAGTCCGAATGCTACCAATAATATTAAGCACAATATTTATGAACACATGTTTAGCACAGCTTCAAACTTTCAGCATACAACAAAGCACAACCTTGGACACAAACATCTTGGGATTCAAAATGCCAGGACCCTCCCTCCCAGTAATCCCTCTATTGTTCATGTTTGTCCTAATTCCTCTATACGACCGAGTTTTTGTCCCGCTTATTCGAAGAATCACAGGAATCCCAACCGGAATCCGACACCTTCAAAGAATTGGAATTGGATTGGTTCTATCAGCTATATCAATGTTAGTTGCTGGTTTTGTCGAAACACGTCGAAAATCTGTAGCCATAGAACATAATATGGTAGATAGCACTGAGCCTTTACCAATGAGTGTTTTTTGGTTGGGTTTTCAATATGCTATTTTTGGAGCTGCAGACATGTTTACACTTATTGGACTTCTAGAGTTTTTCTATGCAGAAAGTTCAGCTGGAATGAAGTCACTTAGTACAGCAATTTCTTGGTGTTCTGTTGCATTTGGTTACTTTACAAGCACAGTGGTTGTTGAGGTAGTTAACAAAGTGAGTGGTGGTTGGTTGGCTAGTAATAACTTGAATAGAGACAAGCTTAACTACTTTTATTGGTTATTGTCAATCATAAGTGTTGTAAACTTTGTATTTTACTTGGTTTGTGCTTCTTGGTATAGATACAAAACAGTGGAAGACAAACACCTAGGTGATTTAAATGATGTTGACATGGTTAAGGTTTAA
Protein sequence

>Msa0501080

MGICRSMATQPRVQRRLGGKRAALFVYAMEGLENMAFVANAVSLITYFTGSMNFSLTKSATTLTNLMGTAFLLPLLGGLISDTYLSRFKTCVLFACMELLGYSILTVQARFQQLRPIPCKDIAPIHMNQCEPANGSQAAILYTGLYLFALGTSGVKAALPALGADQFDDKDPKEAAQLSSFFNWFLLSLTTGAIFGVTFINWISSNQGWYWSFTVCTIAVFLSILSICMGKSFYRNNTPKGSPLIRIIQVFVAAFRNRKLQIPENTEEMHEIHEKERGDSYEILKRTDQFRFLDRAAVGGNSTGSWNLCTVTQVEETKILVRMLPIILSTIFMNTCLAQLQTFSIQQSTTLDTNILGFKMPGPSLPVIPLLFMFVLIPLYDRVFVPLIRRITGIPTGIRHLQRIGIGLVLSAISMLVAGFVETRRKSVAIEHNMVDSTEPLPMSVFWLGFQYAIFGAADMFTLIGLLEFFYAESSAGMKSLSTAISWCSVAFGYFTSTVVVEVVNKVSGGWLASNNLNRDKLNYFYWLLSIISVVNFVFYLVCASWYRYKTVEDKHLGDLNDVDMVKV*