Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342270 | XP_003592323.2 | 96.216 | 185 | 5 | 2 | 73 | 256 | 1 | 184 | 7.79e-112 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342270 | sp|P93736|SYVM1_ARATH | 67.808 | 146 | 42 | 1 | 111 | 256 | 82 | 222 | 8.35e-58 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342270 | G7IC05 | 96.216 | 185 | 5 | 2 | 73 | 256 | 1 | 184 | 3.72e-112 | 355 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa1342270 | 0.804953 | 1.686829e-49 | -8.615850e-47 |
| Msa0003270 | Msa1342270 | 0.800578 | 1.349272e-48 | -8.615850e-47 |
| Msa0012940 | Msa1342270 | 0.809432 | 1.897359e-50 | -8.615850e-47 |
| Msa0038000 | Msa1342270 | 0.813319 | 2.719085e-51 | -8.615850e-47 |
| Msa0038440 | Msa1342270 | 0.805336 | 1.402186e-49 | -8.615850e-47 |
| Msa0041690 | Msa1342270 | 0.815458 | 9.148773e-52 | -8.615850e-47 |
| Msa0047640 | Msa1342270 | 0.835234 | 1.889030e-56 | -8.615850e-47 |
| Msa0054530 | Msa1342270 | 0.837586 | 4.762844e-57 | -8.615850e-47 |
| Msa0062350 | Msa1342270 | 0.801876 | 7.320068e-49 | -8.615850e-47 |
| Msa0069600 | Msa1342270 | 0.800092 | 1.695136e-48 | -8.615850e-47 |
| Msa0087260 | Msa1342270 | 0.801456 | 8.926505e-49 | -8.615850e-47 |
| Msa0090660 | Msa1342270 | 0.812574 | 3.958834e-51 | -8.615850e-47 |
| Msa0116270 | Msa1342270 | 0.843433 | 1.405708e-58 | -8.615850e-47 |
| Msa0117910 | Msa1342270 | 0.801332 | 9.463853e-49 | -8.615850e-47 |
| Msa0626270 | Msa1342270 | 0.816528 | 5.280327e-52 | -8.615850e-47 |
| Msa0646400 | Msa1342270 | 0.813388 | 2.625454e-51 | -8.615850e-47 |
| Msa0743530 | Msa1342270 | 0.808766 | 2.636286e-50 | -8.615850e-47 |
| Msa0749400 | Msa1342270 | 0.810655 | 1.034491e-50 | -8.615850e-47 |
| Msa0788120 | Msa1342270 | 0.806822 | 6.826491e-50 | -8.615850e-47 |
| Msa0133820 | Msa1342270 | 0.804015 | 2.645821e-49 | -8.615850e-47 |
| Msa0137540 | Msa1342270 | 0.806118 | 9.606310e-50 | -8.615850e-47 |
| Msa0174000 | Msa1342270 | 0.801325 | 9.495321e-49 | -8.615850e-47 |
| Msa1235250 | Msa1342270 | 0.806255 | 8.990471e-50 | -8.615850e-47 |
| Msa1254620 | Msa1342270 | 0.811973 | 5.354069e-51 | -8.615850e-47 |
| Msa1259640 | Msa1342270 | 0.820635 | 6.181686e-53 | -8.615850e-47 |
| Msa1268680 | Msa1342270 | 0.820687 | 6.013377e-53 | -8.615850e-47 |
| Msa1329790 | Msa1342270 | 0.821089 | 4.860299e-53 | -8.615850e-47 |
| Msa1342270 | Msa1344310 | 0.808441 | 3.092113e-50 | -8.615850e-47 |
| Msa1342270 | Msa1353550 | 0.803752 | 3.001086e-49 | -8.615850e-47 |
| Msa1342270 | Msa1377810 | 0.815673 | 8.194818e-52 | -8.615850e-47 |
| Msa1342270 | Msa1385810 | 0.809125 | 2.208910e-50 | -8.615850e-47 |
| Msa1342270 | Msa1393820 | 0.803459 | 3.450434e-49 | -8.615850e-47 |
| Msa1342270 | Msa1396870 | 0.809263 | 2.062941e-50 | -8.615850e-47 |
| Msa1342270 | Msa1409260 | 0.806623 | 7.520214e-50 | -8.615850e-47 |
| Msa1342270 | Msa1409500 | 0.815949 | 7.112878e-52 | -8.615850e-47 |
| Msa1342270 | Msa1409950 | 0.803576 | 3.263373e-49 | -8.615850e-47 |
| Msa1342270 | Msa1411500 | 0.832559 | 8.824078e-56 | -8.615850e-47 |
| Msa1342270 | Msa1411950 | 0.806784 | 6.953159e-50 | -8.615850e-47 |
| Msa1342270 | Msa1435770 | 0.810949 | 8.935191e-51 | -8.615850e-47 |
| Msa1342270 | Msa1443310 | 0.826335 | 2.870440e-54 | -8.615850e-47 |
| Msa1342270 | Msa1443930 | 0.802673 | 5.017947e-49 | -8.615850e-47 |
| Msa0431410 | Msa1342270 | 0.815757 | 7.849504e-52 | -8.615850e-47 |
| Msa0996020 | Msa1342270 | 0.803096 | 4.103038e-49 | -8.615850e-47 |
| Msa1037510 | Msa1342270 | 0.809080 | 2.258162e-50 | -8.615850e-47 |
| Msa1072600 | Msa1342270 | 0.846574 | 1.994249e-59 | -8.615850e-47 |
| Msa1072700 | Msa1342270 | 0.805017 | 1.635460e-49 | -8.615850e-47 |
| Msa1095790 | Msa1342270 | 0.833722 | 4.528780e-56 | -8.615850e-47 |
| Msa0279390 | Msa1342270 | 0.819020 | 1.445935e-52 | -8.615850e-47 |
| Msa0307860 | Msa1342270 | 0.817446 | 3.283284e-52 | -8.615850e-47 |
| Msa0318880 | Msa1342270 | 0.802755 | 4.825040e-49 | -8.615850e-47 |
| Msa0333160 | Msa1342270 | 0.800422 | 1.452289e-48 | -8.615850e-47 |
| Msa1127540 | Msa1342270 | 0.830114 | 3.524623e-55 | -8.615850e-47 |
| Msa1211340 | Msa1342270 | 0.823320 | 1.476010e-53 | -8.615850e-47 |
| Msa0510290 | Msa1342270 | 0.825008 | 5.925446e-54 | -8.615850e-47 |
| Msa0511150 | Msa1342270 | 0.816992 | 4.154980e-52 | -8.615850e-47 |
| Msa0544730 | Msa1342270 | 0.801107 | 1.052187e-48 | -8.615850e-47 |
| Msa0547680 | Msa1342270 | 0.834447 | 2.982467e-56 | -8.615850e-47 |
| Msa0969330 | Msa1342270 | 0.803038 | 4.217804e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342270 | MtrunA17_Chr1g0203871 | 96.216 | 185 | 5 | 2 | 73 | 256 | 1 | 184 | 7.17e-116 | 355 |
| Msa1342270 | MtrunA17_Chr6g0460871 | 55.696 | 79 | 35 | 0 | 178 | 256 | 79 | 157 | 9.66e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342270 | AT1G14610.1 | 67.808 | 146 | 42 | 1 | 111 | 256 | 82 | 222 | 8.48e-59 | 201 |
| Msa1342270 | AT5G16715.1 | 55.844 | 77 | 34 | 0 | 180 | 256 | 78 | 154 | 3.20e-24 | 102 |
Find 77 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAGAAGATAAAATTTC+CGG | 0.249644 | tig0005328:-1873 | Msa1342270:CDS |
| CTGTCAGAGCATGGCCTATA+TGG | 0.272526 | tig0005328:+533 | Msa1342270:intergenic |
| CTTCTTCTTCTCGAGATCTT+CGG | 0.281621 | tig0005328:+1572 | Msa1342270:intergenic |
| TTCTTCTTCTCGAGATCTTC+GGG | 0.329085 | tig0005328:+1573 | Msa1342270:intergenic |
| ATTCGTTGGCGACGAATGTC+TGG | 0.352475 | tig0005328:-412 | Msa1342270:CDS |
| CTCAACCACTGCACCGCGTT+TGG | 0.380726 | tig0005328:+1325 | Msa1342270:intergenic |
| TTCTTTCTTCTTGTTAAACT+TGG | 0.382169 | tig0005328:+1497 | Msa1342270:intergenic |
| CGGATAGAACCGGTCAAGAT+TGG | 0.387055 | tig0005328:+1779 | Msa1342270:intergenic |
| TACAATACTTTGTGGGTGCC+CGG | 0.407086 | tig0005328:-388 | Msa1342270:CDS |
| GAAACAAATGTCTAGGCAAT+TGG | 0.413011 | tig0005328:-1258 | Msa1342270:CDS |
| TTCGCTCTTCTTAGAAGCAT+TGG | 0.414607 | tig0005328:+1358 | Msa1342270:intergenic |
| ATGACCCGTTGAACCGGATC+CGG | 0.433384 | tig0005328:+1802 | Msa1342270:intergenic |
| TTCTCGAGATCTTCGGGAAG+GGG | 0.437694 | tig0005328:+1579 | Msa1342270:intergenic |
| CAATCTTGACCGGTTCTATC+CGG | 0.441340 | tig0005328:-1778 | Msa1342270:CDS |
| GATTGGATGACCCGTTGAAC+CGG | 0.442503 | tig0005328:+1796 | Msa1342270:intergenic |
| CACGATTTCTCCACGGCGGT+TGG | 0.442654 | tig0005328:+1221 | Msa1342270:intergenic |
| CATCCCGGATCCGGTTCAAC+GGG | 0.444334 | tig0005328:-1806 | Msa1342270:CDS |
| TGGAGTGTGCGAAGTAGTGA+AGG | 0.448433 | tig0005328:+1654 | Msa1342270:intergenic |
| ATTGATCCCGAGACTCCGTT+TGG | 0.457470 | tig0005328:-1287 | Msa1342270:CDS |
| TTATCACCAAACGGAGTCTC+GGG | 0.461253 | tig0005328:+1281 | Msa1342270:intergenic |
| TGGGTACCTGAGTTATAAAC+CGG | 0.466375 | tig0005328:+1759 | Msa1342270:intergenic |
| TTCTATCCGGTTTATAACTC+AGG | 0.468719 | tig0005328:-1765 | Msa1342270:intron |
| CAGAAACACCATCCCGGATC+CGG | 0.472849 | tig0005328:-1815 | Msa1342270:CDS |
| TAACAAGAAGAAAGAAGCTC+AGG | 0.475307 | tig0005328:-1490 | Msa1342270:intron |
| GTGACAGGTGCACTCCATAT+AGG | 0.479206 | tig0005328:-547 | Msa1342270:CDS |
| CTCGGGATCAATATAATCCT+CGG | 0.485517 | tig0005328:+1298 | Msa1342270:intergenic |
| CTTCTCGAGATCTTCGGGAA+GGG | 0.488660 | tig0005328:+1578 | Msa1342270:intergenic |
| TGGAGTGCACCTGTCACATT+TGG | 0.488660 | tig0005328:+553 | Msa1342270:intergenic |
| AGTTATAAACCGGATAGAAC+CGG | 0.488978 | tig0005328:+1769 | Msa1342270:intergenic |
| GGATGGTGTTTCTGCGGCAG+AGG | 0.491973 | tig0005328:+1824 | Msa1342270:intergenic |
| TGCTCTGACAGCTGCGATTG+AGG | 0.494180 | tig0005328:-521 | Msa1342270:intron |
| CTTATCACCAAACGGAGTCT+CGG | 0.494621 | tig0005328:+1280 | Msa1342270:intergenic |
| TGACCCGTTGAACCGGATCC+GGG | 0.500130 | tig0005328:+1803 | Msa1342270:intergenic |
| GAGATCTTCGGGAAGGGGCG+AGG | 0.507144 | tig0005328:+1584 | Msa1342270:intergenic |
| ACAATACTTTGTGGGTGCCC+GGG | 0.510241 | tig0005328:-387 | Msa1342270:CDS |
| AAGATACTCACAATCACAAA+AGG | 0.511388 | tig0005328:+1061 | Msa1342270:intergenic |
| CACACTCCACTCTTCACCAA+TGG | 0.513784 | tig0005328:-1640 | Msa1342270:CDS |
| TACTTTGTGGGTGCCCGGGA+TGG | 0.514341 | tig0005328:-383 | Msa1342270:CDS |
| GTGATAAGAAACAAATGTCT+AGG | 0.518708 | tig0005328:-1265 | Msa1342270:CDS |
| AAGATAAAATTTCCGGTGCT+CGG | 0.521297 | tig0005328:-1866 | Msa1342270:CDS |
| TTGCCTCCACCAAATGTGAC+AGG | 0.522537 | tig0005328:-562 | Msa1342270:CDS |
| ATTTGTTTCTTATCACCAAA+CGG | 0.527517 | tig0005328:+1272 | Msa1342270:intergenic |
| TCTTCTCGAGATCTTCGGGA+AGG | 0.534076 | tig0005328:+1577 | Msa1342270:intergenic |
| AAAAGAAAGGGAAAGAGAGA+AGG | 0.540109 | tig0005328:-1532 | Msa1342270:CDS |
| CCATCCCGGATCCGGTTCAA+CGG | 0.541946 | tig0005328:-1807 | Msa1342270:CDS |
| GGTGCCCGGGATGGATCATG+CGG | 0.542104 | tig0005328:-374 | Msa1342270:CDS |
| TCGGGATCAATATAATCCTC+GGG | 0.543850 | tig0005328:+1299 | Msa1342270:intergenic |
| ACGGGTCATCCAATCTTGAC+CGG | 0.545311 | tig0005328:-1788 | Msa1342270:CDS |
| TGCAGGATACAATGATTCGT+TGG | 0.548488 | tig0005328:-426 | Msa1342270:intron |
| ATCTGCCAAACGCGGTGCAG+TGG | 0.555210 | tig0005328:-1330 | Msa1342270:CDS |
| AATTCCCGCATGATCCATCC+CGG | 0.557415 | tig0005328:+369 | Msa1342270:intergenic |
| AATTTAGGTGGTACGAGTGG+TGG | 0.566209 | tig0005328:-1129 | Msa1342270:intron |
| TGGTGTTTCTGCGGCAGAGG+AGG | 0.569653 | tig0005328:+1827 | Msa1342270:intergenic |
| TGTCTGGATACAATACTTTG+TGG | 0.576439 | tig0005328:-396 | Msa1342270:CDS |
| AGGAATCCATTGGTGAAGAG+TGG | 0.580092 | tig0005328:+1634 | Msa1342270:intergenic |
| AGTGCACCTGTCACATTTGG+TGG | 0.582874 | tig0005328:+556 | Msa1342270:intergenic |
| CCGTTGAACCGGATCCGGGA+TGG | 0.586221 | tig0005328:+1807 | Msa1342270:intergenic |
| TCGGAGGAGGAGGAATCCAT+TGG | 0.588504 | tig0005328:+1624 | Msa1342270:intergenic |
| GGAGTGTGCGAAGTAGTGAA+GGG | 0.589267 | tig0005328:+1655 | Msa1342270:intergenic |
| CAATCGCAGCTGTCAGAGCA+TGG | 0.589443 | tig0005328:+524 | Msa1342270:intergenic |
| CTGCCGCAGAAACACCATCC+CGG | 0.592090 | tig0005328:-1821 | Msa1342270:CDS |
| GTGCCCGGGATGGATCATGC+GGG | 0.597477 | tig0005328:-373 | Msa1342270:CDS |
| ATTTAGGTGGTACGAGTGGT+GGG | 0.599692 | tig0005328:-1128 | Msa1342270:intron |
| GAGAGAATATGACCGAGCAC+CGG | 0.599692 | tig0005328:+1854 | Msa1342270:intergenic |
| ATTCCCGCATGATCCATCCC+GGG | 0.607521 | tig0005328:+370 | Msa1342270:intergenic |
| GTCTGGATACAATACTTTGT+GGG | 0.612817 | tig0005328:-395 | Msa1342270:CDS |
| GCACCTGTCACATTTGGTGG+AGG | 0.614161 | tig0005328:+559 | None:intergenic |
| GAAGTAGTGAAGGGAAGTAA+CGG | 0.629251 | tig0005328:+1664 | None:intergenic |
| GATCCGGGATGGTGTTTCTG+CGG | 0.641422 | tig0005328:+1818 | None:intergenic |
| TCATGCGGGAATTGCTACAC+AGG | 0.641822 | tig0005328:-359 | None:intergenic |
| GAAAAGAAATCTGCCAAACG+CGG | 0.654105 | tig0005328:-1338 | Msa1342270:CDS |
| TACAATTTAGGTGGTACGAG+TGG | 0.660228 | tig0005328:-1132 | Msa1342270:intron |
| GAAGTATAATCCAACCGCCG+TGG | 0.661509 | tig0005328:-1231 | Msa1342270:CDS |
| ATACTCACAATCACAAAAGG+CGG | 0.675300 | tig0005328:+1064 | Msa1342270:intergenic |
| TGCAGTGGTTGAGAATCCCG+AGG | 0.697853 | tig0005328:-1315 | Msa1342270:CDS |
| CACTCACGATTTCTCCACGG+CGG | 0.720194 | tig0005328:+1217 | Msa1342260:intergenic |
| TGACACTCACGATTTCTCCA+CGG | 0.759309 | tig0005328:+1214 | Msa1342260:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATGTTTGATACAATTT+AGG | - | tig0005328:1130-1149 | Msa1342270:intron | 15.0% |
| !!! | ATTGAACTGTTTTTTTTTTT+AGG | + | tig0005328:1610-1629 | Msa1342270:intergenic | 15.0% |
| !! | TTTAATGTTTGATACAATTT+AGG | - | tig0005328:1130-1149 | Msa1342270:intron | 15.0% |
| !!! | ATTGAACTGTTTTTTTTTTT+AGG | + | tig0005328:1610-1629 | Msa1342270:intergenic | 15.0% |
| !! | GAATGAATGAATGAATAAAT+GGG | + | tig0005328:821-840 | Msa1342270:intergenic | 20.0% |
| !! | TGAATGAATGAATGAATAAA+TGG | + | tig0005328:822-841 | Msa1342270:intergenic | 20.0% |
| !!! | AATTGTAGTTTTCATACTTA+GGG | + | tig0005328:1534-1553 | Msa1342270:intergenic | 20.0% |
| !!! | AAATTGTAGTTTTCATACTT+AGG | + | tig0005328:1533-1552 | Msa1342270:intergenic | 20.0% |
| !!! | AAGTATGAAAACTACAATTT+TGG | - | tig0005328:1360-1379 | Msa1342270:CDS | 20.0% |
| !!! | AAGTATGAAAACTACAATTT+TGG | + | tig0005328:1360-1379 | Msa1342270:intergenic | 20.0% |
| !!! | AAATTGTAGTTTTCATACTT+AGG | - | tig0005328:1533-1552 | Msa1342270:CDS | 20.0% |
| !!! | AATTGTAGTTTTCATACTTA+GGG | - | tig0005328:1534-1553 | Msa1342270:CDS | 20.0% |
| !! | GAATGAATGAATGAATAAAT+GGG | + | tig0005328:821-840 | Msa1342270:intergenic | 20.0% |
| !! | TGAATGAATGAATGAATAAA+TGG | + | tig0005328:822-841 | Msa1342270:intergenic | 20.0% |
| !!! | AATTGTAGTTTTCATACTTA+GGG | + | tig0005328:1534-1553 | Msa1342270:intergenic | 20.0% |
| !!! | AAATTGTAGTTTTCATACTT+AGG | + | tig0005328:1533-1552 | Msa1342270:intergenic | 20.0% |
| !!! | AAGTATGAAAACTACAATTT+TGG | - | tig0005328:1360-1379 | Msa1342270:CDS | 20.0% |
| !!! | AAGTATGAAAACTACAATTT+TGG | + | tig0005328:1360-1379 | Msa1342270:intergenic | 20.0% |
| !!! | AAATTGTAGTTTTCATACTT+AGG | - | tig0005328:1533-1552 | Msa1342270:CDS | 20.0% |
| !!! | AATTGTAGTTTTCATACTTA+GGG | - | tig0005328:1534-1553 | Msa1342270:CDS | 20.0% |
| ! | TCAGAAGAAGATAAAATTTC+CGG | - | tig0005328:401-420 | Msa1342270:CDS | 25.0% |
| ! | CAAAACCTAATGTAATGTTT+GGG | + | tig0005328:537-556 | Msa1342270:intergenic | 25.0% |
| ! | ACAAAACCTAATGTAATGTT+TGG | + | tig0005328:538-557 | Msa1342270:intergenic | 25.0% |
| ! | TTCTTTCTTCTTGTTAAACT+TGG | + | tig0005328:780-799 | Msa1342270:intergenic | 25.0% |
| !! | ATTTGTTTCTTATCACCAAA+CGG | + | tig0005328:1005-1024 | Msa1342270:intergenic | 25.0% |
| ! | AATGTTTGATACAATTTAGG+TGG | - | tig0005328:1133-1152 | Msa1342270:intron | 25.0% |
| ! | CATACATGAGAGTAAAAAAA+AGG | - | tig0005328:1283-1302 | Msa1342270:CDS | 25.0% |
| !! | ATTGTAGTTTTCATACTTAG+GGG | + | tig0005328:1535-1554 | Msa1342270:intergenic | 25.0% |
| !! | TTTTCAAAATGTTGCGATTA+TGG | - | tig0005328:1455-1474 | Msa1342270:intron | 25.0% |
| !!! | TCTCAACAATTTTAAGACAA+AGG | - | tig0005328:1504-1523 | Msa1342270:CDS | 25.0% |
| !!! | CTCAACAATTTTAAGACAAA+GGG | - | tig0005328:1505-1524 | Msa1342270:CDS | 25.0% |
| !!! | TCAACAATTTTAAGACAAAG+GGG | - | tig0005328:1506-1525 | Msa1342270:CDS | 25.0% |
| !! | ATTGTAGTTTTCATACTTAG+GGG | - | tig0005328:1535-1554 | Msa1342270:CDS | 25.0% |
| ! | CAAAACAGAAATGTGAAAAT+GGG | + | tig0005328:1791-1810 | Msa1342270:intergenic | 25.0% |
| ! | TCAGAAGAAGATAAAATTTC+CGG | - | tig0005328:401-420 | Msa1342270:CDS | 25.0% |
| ! | CAAAACCTAATGTAATGTTT+GGG | + | tig0005328:537-556 | Msa1342270:intergenic | 25.0% |
| ! | ACAAAACCTAATGTAATGTT+TGG | + | tig0005328:538-557 | Msa1342270:intergenic | 25.0% |
| ! | TTCTTTCTTCTTGTTAAACT+TGG | + | tig0005328:780-799 | Msa1342270:intergenic | 25.0% |
| !! | ATTTGTTTCTTATCACCAAA+CGG | + | tig0005328:1005-1024 | Msa1342270:intergenic | 25.0% |
| ! | AATGTTTGATACAATTTAGG+TGG | - | tig0005328:1133-1152 | Msa1342270:intron | 25.0% |
| ! | CATACATGAGAGTAAAAAAA+AGG | - | tig0005328:1283-1302 | Msa1342270:CDS | 25.0% |
| !! | ATTGTAGTTTTCATACTTAG+GGG | + | tig0005328:1535-1554 | Msa1342270:intergenic | 25.0% |
| !! | TTTTCAAAATGTTGCGATTA+TGG | - | tig0005328:1455-1474 | Msa1342270:intron | 25.0% |
| !!! | TCTCAACAATTTTAAGACAA+AGG | - | tig0005328:1504-1523 | Msa1342270:CDS | 25.0% |
| !!! | CTCAACAATTTTAAGACAAA+GGG | - | tig0005328:1505-1524 | Msa1342270:CDS | 25.0% |
| !!! | TCAACAATTTTAAGACAAAG+GGG | - | tig0005328:1506-1525 | Msa1342270:CDS | 25.0% |
| !! | ATTGTAGTTTTCATACTTAG+GGG | - | tig0005328:1535-1554 | Msa1342270:CDS | 25.0% |
| ! | CAAAACAGAAATGTGAAAAT+GGG | + | tig0005328:1791-1810 | Msa1342270:intergenic | 25.0% |
| GAAGAAGAAAAAACTGGAAA+AGG | - | tig0005328:718-737 | Msa1342270:intron | 30.0% | |
| AACTGGAAAAGGAAAAAGAA+AGG | - | tig0005328:729-748 | Msa1342270:intron | 30.0% | |
| ACTGGAAAAGGAAAAAGAAA+GGG | - | tig0005328:730-749 | Msa1342270:intron | 30.0% | |
| GTGATAAGAAACAAATGTCT+AGG | - | tig0005328:1009-1028 | Msa1342270:intron | 30.0% | |
| !! | GGAGAAATCAAAGTATTTTG+TGG | - | tig0005328:1167-1186 | Msa1342270:intron | 30.0% |
| AAGATACTCACAATCACAAA+AGG | + | tig0005328:1216-1235 | Msa1342270:intergenic | 30.0% | |
| !! | TCGCAACTTTTTGAAAGATA+GGG | + | tig0005328:1565-1584 | Msa1342270:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | + | tig0005328:1564-1583 | Msa1342270:intergenic | 30.0% |
| ! | TTGTAGTTTTCATACTTAGG+GGG | + | tig0005328:1536-1555 | Msa1342270:intergenic | 30.0% |
| !! | CGCAACATTTTGAAAAGATA+AGG | + | tig0005328:1451-1470 | Msa1342270:intergenic | 30.0% |
| ! | TTGTAGTTTTCATACTTAGG+GGG | - | tig0005328:1536-1555 | Msa1342270:CDS | 30.0% |
| CTTTCAAAAAGTTGCGATTT+CGG | + | tig0005328:1331-1350 | Msa1342270:intergenic | 30.0% | |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | - | tig0005328:1564-1583 | Msa1342270:CDS | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | - | tig0005328:1565-1584 | Msa1342270:CDS | 30.0% |
| ! | TCTGACTGTGCTATAATTTT+AGG | - | tig0005328:1687-1706 | Msa1342270:intron | 30.0% |
| GCAAAACAGAAATGTGAAAA+TGG | + | tig0005328:1792-1811 | Msa1342270:intergenic | 30.0% | |
| GAAGAAGAAAAAACTGGAAA+AGG | - | tig0005328:718-737 | Msa1342270:intron | 30.0% | |
| AACTGGAAAAGGAAAAAGAA+AGG | - | tig0005328:729-748 | Msa1342270:intron | 30.0% | |
| ACTGGAAAAGGAAAAAGAAA+GGG | - | tig0005328:730-749 | Msa1342270:intron | 30.0% | |
| GTGATAAGAAACAAATGTCT+AGG | - | tig0005328:1009-1028 | Msa1342270:intron | 30.0% | |
| !! | GGAGAAATCAAAGTATTTTG+TGG | - | tig0005328:1167-1186 | Msa1342270:intron | 30.0% |
| AAGATACTCACAATCACAAA+AGG | + | tig0005328:1216-1235 | Msa1342270:intergenic | 30.0% | |
| !! | TCGCAACTTTTTGAAAGATA+GGG | + | tig0005328:1565-1584 | Msa1342270:intergenic | 30.0% |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | + | tig0005328:1564-1583 | Msa1342270:intergenic | 30.0% |
| ! | TTGTAGTTTTCATACTTAGG+GGG | + | tig0005328:1536-1555 | Msa1342270:intergenic | 30.0% |
| !! | CGCAACATTTTGAAAAGATA+AGG | + | tig0005328:1451-1470 | Msa1342270:intergenic | 30.0% |
| ! | TTGTAGTTTTCATACTTAGG+GGG | - | tig0005328:1536-1555 | Msa1342270:CDS | 30.0% |
| CTTTCAAAAAGTTGCGATTT+CGG | + | tig0005328:1331-1350 | Msa1342270:intergenic | 30.0% | |
| !! | ATCGCAACTTTTTGAAAGAT+AGG | - | tig0005328:1564-1583 | Msa1342270:CDS | 30.0% |
| !! | TCGCAACTTTTTGAAAGATA+GGG | - | tig0005328:1565-1584 | Msa1342270:CDS | 30.0% |
| ! | TCTGACTGTGCTATAATTTT+AGG | - | tig0005328:1687-1706 | Msa1342270:intron | 30.0% |
| GCAAAACAGAAATGTGAAAA+TGG | + | tig0005328:1792-1811 | Msa1342270:intergenic | 30.0% | |
| AAGATAAAATTTCCGGTGCT+CGG | - | tig0005328:408-427 | Msa1342270:CDS | 35.0% | |
| AGTTATAAACCGGATAGAAC+CGG | + | tig0005328:508-527 | Msa1342270:intergenic | 35.0% | |
| TTCTATCCGGTTTATAACTC+AGG | - | tig0005328:509-528 | Msa1342270:intron | 35.0% | |
| AGGTACCCAAACATTACATT+AGG | - | tig0005328:529-548 | Msa1342270:CDS | 35.0% | |
| AGTAAACCAGAGTTCAGAAA+CGG | + | tig0005328:565-584 | Msa1342270:intergenic | 35.0% | |
| !! | GGATTGCACGTTTTTGTTAT+CGG | + | tig0005328:672-691 | Msa1342270:intergenic | 35.0% |
| CGAGAAGAAGAAGAAAAAAC+TGG | - | tig0005328:712-731 | Msa1342270:intron | 35.0% | |
| AAAAGAAAGGGAAAGAGAGA+AGG | - | tig0005328:742-761 | Msa1342270:intron | 35.0% | |
| TAACAAGAAGAAAGAAGCTC+AGG | - | tig0005328:784-803 | Msa1342270:intron | 35.0% | |
| GAAACAAATGTCTAGGCAAT+TGG | - | tig0005328:1016-1035 | Msa1342270:intron | 35.0% | |
| ATACTCACAATCACAAAAGG+CGG | + | tig0005328:1213-1232 | Msa1342270:intergenic | 35.0% | |
| AAAAGGCTAAAGTGCAACTT+TGG | - | tig0005328:1300-1319 | Msa1342270:CDS | 35.0% | |
| !! | GCAACTTTTTGAAAGATAGG+GGG | + | tig0005328:1567-1586 | Msa1342270:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | + | tig0005328:1566-1585 | Msa1342270:intergenic | 35.0% |
| CTTATGTTAGGGGGTTAAAA+GGG | + | tig0005328:1409-1428 | Msa1342270:intergenic | 35.0% | |
| ! | CTTTTAACCCCCTAACATAA+GGG | - | tig0005328:1408-1427 | Msa1342270:intron | 35.0% |
| ! | TTTTAACCCCCTAACATAAG+GGG | - | tig0005328:1409-1428 | Msa1342270:intron | 35.0% |
| ACATATTCCCCTTATGTTAG+GGG | + | tig0005328:1419-1438 | Msa1342270:intergenic | 35.0% | |
| GACATATTCCCCTTATGTTA+GGG | + | tig0005328:1420-1439 | Msa1342270:intergenic | 35.0% | |
| AGACATATTCCCCTTATGTT+AGG | + | tig0005328:1421-1440 | Msa1342270:intergenic | 35.0% | |
| !! | CGCAACTTTTTGAAAGATAG+GGG | - | tig0005328:1566-1585 | Msa1342270:CDS | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | - | tig0005328:1567-1586 | Msa1342270:CDS | 35.0% |
| TTTAGGCTAAAGTGCAACTT+TGG | + | tig0005328:1593-1612 | Msa1342270:intergenic | 35.0% | |
| CTGCAAGCAATATATCACAT+TGG | + | tig0005328:1833-1852 | Msa1342270:intergenic | 35.0% | |
| CAATGTGATATATTGCTTGC+AGG | - | tig0005328:1831-1850 | Msa1342270:CDS | 35.0% | |
| TGTCTGGATACAATACTTTG+TGG | - | tig0005328:1878-1897 | Msa1342270:CDS | 35.0% | |
| GTCTGGATACAATACTTTGT+GGG | - | tig0005328:1879-1898 | Msa1342270:CDS | 35.0% | |
| AAGATAAAATTTCCGGTGCT+CGG | - | tig0005328:408-427 | Msa1342270:CDS | 35.0% | |
| AGTTATAAACCGGATAGAAC+CGG | + | tig0005328:508-527 | Msa1342270:intergenic | 35.0% | |
| TTCTATCCGGTTTATAACTC+AGG | - | tig0005328:509-528 | Msa1342270:intron | 35.0% | |
| AGGTACCCAAACATTACATT+AGG | - | tig0005328:529-548 | Msa1342270:CDS | 35.0% | |
| AGTAAACCAGAGTTCAGAAA+CGG | + | tig0005328:565-584 | Msa1342270:intergenic | 35.0% | |
| !! | GGATTGCACGTTTTTGTTAT+CGG | + | tig0005328:672-691 | Msa1342270:intergenic | 35.0% |
| CGAGAAGAAGAAGAAAAAAC+TGG | - | tig0005328:712-731 | Msa1342270:intron | 35.0% | |
| AAAAGAAAGGGAAAGAGAGA+AGG | - | tig0005328:742-761 | Msa1342270:intron | 35.0% | |
| TAACAAGAAGAAAGAAGCTC+AGG | - | tig0005328:784-803 | Msa1342270:intron | 35.0% | |
| GAAACAAATGTCTAGGCAAT+TGG | - | tig0005328:1016-1035 | Msa1342270:intron | 35.0% | |
| ATACTCACAATCACAAAAGG+CGG | + | tig0005328:1213-1232 | Msa1342270:intergenic | 35.0% | |
| AAAAGGCTAAAGTGCAACTT+TGG | - | tig0005328:1300-1319 | Msa1342270:CDS | 35.0% | |
| !! | GCAACTTTTTGAAAGATAGG+GGG | + | tig0005328:1567-1586 | Msa1342270:intergenic | 35.0% |
| !! | CGCAACTTTTTGAAAGATAG+GGG | + | tig0005328:1566-1585 | Msa1342270:intergenic | 35.0% |
| CTTATGTTAGGGGGTTAAAA+GGG | + | tig0005328:1409-1428 | Msa1342270:intergenic | 35.0% | |
| ! | CTTTTAACCCCCTAACATAA+GGG | - | tig0005328:1408-1427 | Msa1342270:intron | 35.0% |
| ! | TTTTAACCCCCTAACATAAG+GGG | - | tig0005328:1409-1428 | Msa1342270:intron | 35.0% |
| ACATATTCCCCTTATGTTAG+GGG | + | tig0005328:1419-1438 | Msa1342270:intergenic | 35.0% | |
| GACATATTCCCCTTATGTTA+GGG | + | tig0005328:1420-1439 | Msa1342270:intergenic | 35.0% | |
| AGACATATTCCCCTTATGTT+AGG | + | tig0005328:1421-1440 | Msa1342270:intergenic | 35.0% | |
| !! | CGCAACTTTTTGAAAGATAG+GGG | - | tig0005328:1566-1585 | Msa1342270:CDS | 35.0% |
| !! | GCAACTTTTTGAAAGATAGG+GGG | - | tig0005328:1567-1586 | Msa1342270:CDS | 35.0% |
| TTTAGGCTAAAGTGCAACTT+TGG | + | tig0005328:1593-1612 | Msa1342270:intergenic | 35.0% | |
| CTGCAAGCAATATATCACAT+TGG | + | tig0005328:1833-1852 | Msa1342270:intergenic | 35.0% | |
| CAATGTGATATATTGCTTGC+AGG | - | tig0005328:1831-1850 | Msa1342270:CDS | 35.0% | |
| TGTCTGGATACAATACTTTG+TGG | - | tig0005328:1878-1897 | Msa1342270:CDS | 35.0% | |
| GTCTGGATACAATACTTTGT+GGG | - | tig0005328:1879-1898 | Msa1342270:CDS | 35.0% | |
| TGGGTACCTGAGTTATAAAC+CGG | + | tig0005328:518-537 | Msa1342270:intergenic | 40.0% | |
| GAAGTAGTGAAGGGAAGTAA+CGG | + | tig0005328:613-632 | Msa1342270:intergenic | 40.0% | |
| !! | TTGCACGTTTTTGTTATCGG+AGG | + | tig0005328:669-688 | Msa1342270:intergenic | 40.0% |
| TTCTTCTTCTCGAGATCTTC+GGG | + | tig0005328:704-723 | Msa1342270:intergenic | 40.0% | |
| CTTCTTCTTCTCGAGATCTT+CGG | + | tig0005328:705-724 | Msa1342270:intergenic | 40.0% | |
| ! | TTCGCTCTTCTTAGAAGCAT+TGG | + | tig0005328:919-938 | Msa1342270:intergenic | 40.0% |
| GAAAAGAAATCTGCCAAACG+CGG | - | tig0005328:936-955 | Msa1342270:intron | 40.0% | |
| TCGGGATCAATATAATCCTC+GGG | + | tig0005328:978-997 | Msa1342270:intergenic | 40.0% | |
| CTCGGGATCAATATAATCCT+CGG | + | tig0005328:979-998 | Msa1342270:intergenic | 40.0% | |
| TACAATTTAGGTGGTACGAG+TGG | - | tig0005328:1142-1161 | Msa1342270:intron | 40.0% | |
| GACACAACATCAGAATAAGC+TGG | + | tig0005328:1241-1260 | Msa1342270:intergenic | 40.0% | |
| CATATTTCCCTAAACATGGG+GGG | + | tig0005328:1386-1405 | Msa1342270:intergenic | 40.0% | |
| GCATATTTCCCTAAACATGG+GGG | + | tig0005328:1387-1406 | Msa1342270:intergenic | 40.0% | |
| GGCATATTTCCCTAAACATG+GGG | + | tig0005328:1388-1407 | Msa1342270:intergenic | 40.0% | |
| GGGCATATTTCCCTAAACAT+GGG | + | tig0005328:1389-1408 | Msa1342270:intergenic | 40.0% | |
| AGGGCATATTTCCCTAAACA+TGG | + | tig0005328:1390-1409 | Msa1342270:intergenic | 40.0% | |
| CCTTATGTTAGGGGGTTAAA+AGG | + | tig0005328:1410-1429 | Msa1342270:intergenic | 40.0% | |
| ! | CCTTTTAACCCCCTAACATA+AGG | - | tig0005328:1407-1426 | Msa1342270:intron | 40.0% |
| CATATTCCCCTTATGTTAGG+GGG | + | tig0005328:1418-1437 | Msa1342270:intergenic | 40.0% | |
| TGCAGGATACAATGATTCGT+TGG | - | tig0005328:1848-1867 | Msa1342270:CDS | 40.0% | |
| TGGGTACCTGAGTTATAAAC+CGG | + | tig0005328:518-537 | Msa1342270:intergenic | 40.0% | |
| GAAGTAGTGAAGGGAAGTAA+CGG | + | tig0005328:613-632 | Msa1342270:intergenic | 40.0% | |
| !! | TTGCACGTTTTTGTTATCGG+AGG | + | tig0005328:669-688 | Msa1342270:intergenic | 40.0% |
| TTCTTCTTCTCGAGATCTTC+GGG | + | tig0005328:704-723 | Msa1342270:intergenic | 40.0% | |
| CTTCTTCTTCTCGAGATCTT+CGG | + | tig0005328:705-724 | Msa1342270:intergenic | 40.0% | |
| ! | TTCGCTCTTCTTAGAAGCAT+TGG | + | tig0005328:919-938 | Msa1342270:intergenic | 40.0% |
| GAAAAGAAATCTGCCAAACG+CGG | - | tig0005328:936-955 | Msa1342270:intron | 40.0% | |
| TCGGGATCAATATAATCCTC+GGG | + | tig0005328:978-997 | Msa1342270:intergenic | 40.0% | |
| CTCGGGATCAATATAATCCT+CGG | + | tig0005328:979-998 | Msa1342270:intergenic | 40.0% | |
| TACAATTTAGGTGGTACGAG+TGG | - | tig0005328:1142-1161 | Msa1342270:intron | 40.0% | |
| GACACAACATCAGAATAAGC+TGG | + | tig0005328:1241-1260 | Msa1342270:intergenic | 40.0% | |
| CATATTTCCCTAAACATGGG+GGG | + | tig0005328:1386-1405 | Msa1342270:intergenic | 40.0% | |
| GCATATTTCCCTAAACATGG+GGG | + | tig0005328:1387-1406 | Msa1342270:intergenic | 40.0% | |
| GGCATATTTCCCTAAACATG+GGG | + | tig0005328:1388-1407 | Msa1342270:intergenic | 40.0% | |
| GGGCATATTTCCCTAAACAT+GGG | + | tig0005328:1389-1408 | Msa1342270:intergenic | 40.0% | |
| AGGGCATATTTCCCTAAACA+TGG | + | tig0005328:1390-1409 | Msa1342270:intergenic | 40.0% | |
| CCTTATGTTAGGGGGTTAAA+AGG | + | tig0005328:1410-1429 | Msa1342270:intergenic | 40.0% | |
| ! | CCTTTTAACCCCCTAACATA+AGG | - | tig0005328:1407-1426 | Msa1342270:intron | 40.0% |
| CATATTCCCCTTATGTTAGG+GGG | + | tig0005328:1418-1437 | Msa1342270:intergenic | 40.0% | |
| TGCAGGATACAATGATTCGT+TGG | - | tig0005328:1848-1867 | Msa1342270:CDS | 40.0% | |
| ! | CAATCTTGACCGGTTCTATC+CGG | - | tig0005328:496-515 | Msa1342270:intron | 45.0% |
| GTTGTTCCGTTTCTGAACTC+TGG | - | tig0005328:556-575 | Msa1342270:CDS | 45.0% | |
| AAGTAACGGCGCTATCAAGA+TGG | + | tig0005328:599-618 | Msa1342270:intergenic | 45.0% | |
| AGGAATCCATTGGTGAAGAG+TGG | + | tig0005328:643-662 | Msa1342270:intergenic | 45.0% | |
| !! | GTTTTTGTTATCGGAGGAGG+AGG | + | tig0005328:663-682 | Msa1342270:intergenic | 45.0% |
| !! | CACGTTTTTGTTATCGGAGG+AGG | + | tig0005328:666-685 | Msa1342270:intergenic | 45.0% |
| TTATCACCAAACGGAGTCTC+GGG | + | tig0005328:996-1015 | Msa1342270:intergenic | 45.0% | |
| CTTATCACCAAACGGAGTCT+CGG | + | tig0005328:997-1016 | Msa1342270:intergenic | 45.0% | |
| TGACACTCACGATTTCTCCA+CGG | + | tig0005328:1063-1082 | Msa1342270:intergenic | 45.0% | |
| AATTTAGGTGGTACGAGTGG+TGG | - | tig0005328:1145-1164 | Msa1342270:intron | 45.0% | |
| ATTTAGGTGGTACGAGTGGT+GGG | - | tig0005328:1146-1165 | Msa1342270:intron | 45.0% | |
| !! | AATTTTGGCCCCCCATGTTT+AGG | - | tig0005328:1375-1394 | Msa1342270:CDS | 45.0% |
| !! | ATTTTGGCCCCCCATGTTTA+GGG | - | tig0005328:1376-1395 | Msa1342270:CDS | 45.0% |
| !!! | TGCGATTATGGCCCCTTTTT+TGG | - | tig0005328:1467-1486 | Msa1342270:intron | 45.0% |
| !!! | GCGATTATGGCCCCTTTTTT+GGG | - | tig0005328:1468-1487 | Msa1342270:intron | 45.0% |
| TACAATACTTTGTGGGTGCC+CGG | - | tig0005328:1886-1905 | Msa1342270:CDS | 45.0% | |
| ! | CAATCTTGACCGGTTCTATC+CGG | - | tig0005328:496-515 | Msa1342270:intron | 45.0% |
| GTTGTTCCGTTTCTGAACTC+TGG | - | tig0005328:556-575 | Msa1342270:CDS | 45.0% | |
| AAGTAACGGCGCTATCAAGA+TGG | + | tig0005328:599-618 | Msa1342270:intergenic | 45.0% | |
| AGGAATCCATTGGTGAAGAG+TGG | + | tig0005328:643-662 | Msa1342270:intergenic | 45.0% | |
| !! | GTTTTTGTTATCGGAGGAGG+AGG | + | tig0005328:663-682 | Msa1342270:intergenic | 45.0% |
| !! | CACGTTTTTGTTATCGGAGG+AGG | + | tig0005328:666-685 | Msa1342270:intergenic | 45.0% |
| TTATCACCAAACGGAGTCTC+GGG | + | tig0005328:996-1015 | Msa1342270:intergenic | 45.0% | |
| CTTATCACCAAACGGAGTCT+CGG | + | tig0005328:997-1016 | Msa1342270:intergenic | 45.0% | |
| TGACACTCACGATTTCTCCA+CGG | + | tig0005328:1063-1082 | Msa1342270:intergenic | 45.0% | |
| AATTTAGGTGGTACGAGTGG+TGG | - | tig0005328:1145-1164 | Msa1342270:intron | 45.0% | |
| ATTTAGGTGGTACGAGTGGT+GGG | - | tig0005328:1146-1165 | Msa1342270:intron | 45.0% | |
| !! | AATTTTGGCCCCCCATGTTT+AGG | - | tig0005328:1375-1394 | Msa1342270:CDS | 45.0% |
| !! | ATTTTGGCCCCCCATGTTTA+GGG | - | tig0005328:1376-1395 | Msa1342270:CDS | 45.0% |
| !!! | TGCGATTATGGCCCCTTTTT+TGG | - | tig0005328:1467-1486 | Msa1342270:intron | 45.0% |
| !!! | GCGATTATGGCCCCTTTTTT+GGG | - | tig0005328:1468-1487 | Msa1342270:intron | 45.0% |
| TACAATACTTTGTGGGTGCC+CGG | - | tig0005328:1886-1905 | Msa1342270:CDS | 45.0% | |
| GAGAGAATATGACCGAGCAC+CGG | + | tig0005328:423-442 | Msa1342270:intergenic | 50.0% | |
| GATTGGATGACCCGTTGAAC+CGG | + | tig0005328:481-500 | Msa1342270:intergenic | 50.0% | |
| ACGGGTCATCCAATCTTGAC+CGG | - | tig0005328:486-505 | Msa1342270:intron | 50.0% | |
| CGGATAGAACCGGTCAAGAT+TGG | + | tig0005328:498-517 | Msa1342270:intergenic | 50.0% | |
| GGAGTGTGCGAAGTAGTGAA+GGG | + | tig0005328:622-641 | Msa1342270:intergenic | 50.0% | |
| TGGAGTGTGCGAAGTAGTGA+AGG | + | tig0005328:623-642 | Msa1342270:intergenic | 50.0% | |
| CACACTCCACTCTTCACCAA+TGG | - | tig0005328:634-653 | Msa1342270:intron | 50.0% | |
| TTCTCGAGATCTTCGGGAAG+GGG | + | tig0005328:698-717 | Msa1342270:intergenic | 50.0% | |
| CTTCTCGAGATCTTCGGGAA+GGG | + | tig0005328:699-718 | Msa1342270:intergenic | 50.0% | |
| TCTTCTCGAGATCTTCGGGA+AGG | + | tig0005328:700-719 | Msa1342270:intergenic | 50.0% | |
| ATTGATCCCGAGACTCCGTT+TGG | - | tig0005328:987-1006 | Msa1342270:intron | 50.0% | |
| GAAGTATAATCCAACCGCCG+TGG | - | tig0005328:1043-1062 | Msa1342270:intron | 50.0% | |
| ACGCCACGTGTCCCAAAAAA+GGG | + | tig0005328:1482-1501 | Msa1342270:intergenic | 50.0% | |
| TTGCCTCCACCAAATGTGAC+AGG | - | tig0005328:1712-1731 | Msa1342270:intron | 50.0% | |
| AGTGCACCTGTCACATTTGG+TGG | + | tig0005328:1721-1740 | Msa1342270:intergenic | 50.0% | |
| TGGAGTGCACCTGTCACATT+TGG | + | tig0005328:1724-1743 | Msa1342270:intergenic | 50.0% | |
| GTGACAGGTGCACTCCATAT+AGG | - | tig0005328:1727-1746 | Msa1342270:intron | 50.0% | |
| CTGTCAGAGCATGGCCTATA+TGG | + | tig0005328:1744-1763 | Msa1342270:intergenic | 50.0% | |
| ATTCGTTGGCGACGAATGTC+TGG | - | tig0005328:1862-1881 | Msa1342270:CDS | 50.0% | |
| ACAATACTTTGTGGGTGCCC+GGG | - | tig0005328:1887-1906 | Msa1342270:CDS | 50.0% | |
| AATTCCCGCATGATCCATCC+CGG | + | tig0005328:1908-1927 | Msa1342270:intergenic | 50.0% | |
| GAGAGAATATGACCGAGCAC+CGG | + | tig0005328:423-442 | Msa1342270:intergenic | 50.0% | |
| GATTGGATGACCCGTTGAAC+CGG | + | tig0005328:481-500 | Msa1342270:intergenic | 50.0% | |
| ACGGGTCATCCAATCTTGAC+CGG | - | tig0005328:486-505 | Msa1342270:intron | 50.0% | |
| CGGATAGAACCGGTCAAGAT+TGG | + | tig0005328:498-517 | Msa1342270:intergenic | 50.0% | |
| GGAGTGTGCGAAGTAGTGAA+GGG | + | tig0005328:622-641 | Msa1342270:intergenic | 50.0% | |
| TGGAGTGTGCGAAGTAGTGA+AGG | + | tig0005328:623-642 | Msa1342270:intergenic | 50.0% | |
| CACACTCCACTCTTCACCAA+TGG | - | tig0005328:634-653 | Msa1342270:intron | 50.0% | |
| TTCTCGAGATCTTCGGGAAG+GGG | + | tig0005328:698-717 | Msa1342270:intergenic | 50.0% | |
| CTTCTCGAGATCTTCGGGAA+GGG | + | tig0005328:699-718 | Msa1342270:intergenic | 50.0% | |
| TCTTCTCGAGATCTTCGGGA+AGG | + | tig0005328:700-719 | Msa1342270:intergenic | 50.0% | |
| ATTGATCCCGAGACTCCGTT+TGG | - | tig0005328:987-1006 | Msa1342270:intron | 50.0% | |
| GAAGTATAATCCAACCGCCG+TGG | - | tig0005328:1043-1062 | Msa1342270:intron | 50.0% | |
| ACGCCACGTGTCCCAAAAAA+GGG | + | tig0005328:1482-1501 | Msa1342270:intergenic | 50.0% | |
| TTGCCTCCACCAAATGTGAC+AGG | - | tig0005328:1712-1731 | Msa1342270:intron | 50.0% | |
| AGTGCACCTGTCACATTTGG+TGG | + | tig0005328:1721-1740 | Msa1342270:intergenic | 50.0% | |
| TGGAGTGCACCTGTCACATT+TGG | + | tig0005328:1724-1743 | Msa1342270:intergenic | 50.0% | |
| GTGACAGGTGCACTCCATAT+AGG | - | tig0005328:1727-1746 | Msa1342270:intron | 50.0% | |
| CTGTCAGAGCATGGCCTATA+TGG | + | tig0005328:1744-1763 | Msa1342270:intergenic | 50.0% | |
| ATTCGTTGGCGACGAATGTC+TGG | - | tig0005328:1862-1881 | Msa1342270:CDS | 50.0% | |
| ACAATACTTTGTGGGTGCCC+GGG | - | tig0005328:1887-1906 | Msa1342270:CDS | 50.0% | |
| AATTCCCGCATGATCCATCC+CGG | + | tig0005328:1908-1927 | Msa1342270:intergenic | 50.0% | |
| ! | GATCCGGGATGGTGTTTCTG+CGG | + | tig0005328:459-478 | Msa1342270:intergenic | 55.0% |
| CAGAAACACCATCCCGGATC+CGG | - | tig0005328:459-478 | Msa1342270:intron | 55.0% | |
| ATGACCCGTTGAACCGGATC+CGG | + | tig0005328:475-494 | Msa1342270:intergenic | 55.0% | |
| TCGGAGGAGGAGGAATCCAT+TGG | + | tig0005328:653-672 | Msa1342270:intergenic | 55.0% | |
| TGCAGTGGTTGAGAATCCCG+AGG | - | tig0005328:959-978 | Msa1342270:intron | 55.0% | |
| CACTCACGATTTCTCCACGG+CGG | + | tig0005328:1060-1079 | Msa1342270:intergenic | 55.0% | |
| CGCCACGTGTCCCAAAAAAG+GGG | + | tig0005328:1481-1500 | Msa1342270:intergenic | 55.0% | |
| GACGCCACGTGTCCCAAAAA+AGG | + | tig0005328:1483-1502 | Msa1342270:intergenic | 55.0% | |
| ! | GCACCTGTCACATTTGGTGG+AGG | + | tig0005328:1718-1737 | Msa1342270:intergenic | 55.0% |
| CAATCGCAGCTGTCAGAGCA+TGG | + | tig0005328:1753-1772 | Msa1342270:intergenic | 55.0% | |
| TGCTCTGACAGCTGCGATTG+AGG | - | tig0005328:1753-1772 | Msa1342270:intron | 55.0% | |
| ATTCCCGCATGATCCATCCC+GGG | + | tig0005328:1907-1926 | Msa1342270:intergenic | 55.0% | |
| ! | GATCCGGGATGGTGTTTCTG+CGG | + | tig0005328:459-478 | Msa1342270:intergenic | 55.0% |
| CAGAAACACCATCCCGGATC+CGG | - | tig0005328:459-478 | Msa1342270:intron | 55.0% | |
| ATGACCCGTTGAACCGGATC+CGG | + | tig0005328:475-494 | Msa1342270:intergenic | 55.0% | |
| TCGGAGGAGGAGGAATCCAT+TGG | + | tig0005328:653-672 | Msa1342270:intergenic | 55.0% | |
| TGCAGTGGTTGAGAATCCCG+AGG | - | tig0005328:959-978 | Msa1342270:intron | 55.0% | |
| CACTCACGATTTCTCCACGG+CGG | + | tig0005328:1060-1079 | Msa1342270:intergenic | 55.0% | |
| CGCCACGTGTCCCAAAAAAG+GGG | + | tig0005328:1481-1500 | Msa1342270:intergenic | 55.0% | |
| GACGCCACGTGTCCCAAAAA+AGG | + | tig0005328:1483-1502 | Msa1342270:intergenic | 55.0% | |
| ! | GCACCTGTCACATTTGGTGG+AGG | + | tig0005328:1718-1737 | Msa1342270:intergenic | 55.0% |
| CAATCGCAGCTGTCAGAGCA+TGG | + | tig0005328:1753-1772 | Msa1342270:intergenic | 55.0% | |
| TGCTCTGACAGCTGCGATTG+AGG | - | tig0005328:1753-1772 | Msa1342270:intron | 55.0% | |
| ATTCCCGCATGATCCATCCC+GGG | + | tig0005328:1907-1926 | Msa1342270:intergenic | 55.0% | |
| ! | TGGTGTTTCTGCGGCAGAGG+AGG | + | tig0005328:450-469 | Msa1342270:intergenic | 60.0% |
| ! | GGATGGTGTTTCTGCGGCAG+AGG | + | tig0005328:453-472 | Msa1342270:intergenic | 60.0% |
| CTGCCGCAGAAACACCATCC+CGG | - | tig0005328:453-472 | Msa1342270:intron | 60.0% | |
| CCATCCCGGATCCGGTTCAA+CGG | - | tig0005328:467-486 | Msa1342270:intron | 60.0% | |
| CATCCCGGATCCGGTTCAAC+GGG | - | tig0005328:468-487 | Msa1342270:intron | 60.0% | |
| TGACCCGTTGAACCGGATCC+GGG | + | tig0005328:474-493 | Msa1342270:intergenic | 60.0% | |
| ATCTGCCAAACGCGGTGCAG+TGG | - | tig0005328:944-963 | Msa1342270:intron | 60.0% | |
| CTCAACCACTGCACCGCGTT+TGG | + | tig0005328:952-971 | Msa1342270:intergenic | 60.0% | |
| CACGATTTCTCCACGGCGGT+TGG | + | tig0005328:1056-1075 | Msa1342270:intergenic | 60.0% | |
| !!! | GGCCCCTTTTTTGGGACACG+TGG | - | tig0005328:1476-1495 | Msa1342270:intron | 60.0% |
| TACTTTGTGGGTGCCCGGGA+TGG | - | tig0005328:1891-1910 | Msa1342270:CDS | 60.0% | |
| ! | TGGTGTTTCTGCGGCAGAGG+AGG | + | tig0005328:450-469 | Msa1342270:intergenic | 60.0% |
| ! | GGATGGTGTTTCTGCGGCAG+AGG | + | tig0005328:453-472 | Msa1342270:intergenic | 60.0% |
| CTGCCGCAGAAACACCATCC+CGG | - | tig0005328:453-472 | Msa1342270:intron | 60.0% | |
| CCATCCCGGATCCGGTTCAA+CGG | - | tig0005328:467-486 | Msa1342270:intron | 60.0% | |
| CATCCCGGATCCGGTTCAAC+GGG | - | tig0005328:468-487 | Msa1342270:intron | 60.0% | |
| TGACCCGTTGAACCGGATCC+GGG | + | tig0005328:474-493 | Msa1342270:intergenic | 60.0% | |
| ATCTGCCAAACGCGGTGCAG+TGG | - | tig0005328:944-963 | Msa1342270:intron | 60.0% | |
| CTCAACCACTGCACCGCGTT+TGG | + | tig0005328:952-971 | Msa1342270:intergenic | 60.0% | |
| CACGATTTCTCCACGGCGGT+TGG | + | tig0005328:1056-1075 | Msa1342270:intergenic | 60.0% | |
| !!! | GGCCCCTTTTTTGGGACACG+TGG | - | tig0005328:1476-1495 | Msa1342270:intron | 60.0% |
| TACTTTGTGGGTGCCCGGGA+TGG | - | tig0005328:1891-1910 | Msa1342270:CDS | 60.0% | |
| CCGTTGAACCGGATCCGGGA+TGG | + | tig0005328:470-489 | Msa1342270:intergenic | 65.0% | |
| GAGATCTTCGGGAAGGGGCG+AGG | + | tig0005328:693-712 | Msa1342270:intergenic | 65.0% | |
| GGTGCCCGGGATGGATCATG+CGG | - | tig0005328:1900-1919 | Msa1342270:CDS | 65.0% | |
| GTGCCCGGGATGGATCATGC+GGG | - | tig0005328:1901-1920 | Msa1342270:CDS | 65.0% | |
| CCGTTGAACCGGATCCGGGA+TGG | + | tig0005328:470-489 | Msa1342270:intergenic | 65.0% | |
| GAGATCTTCGGGAAGGGGCG+AGG | + | tig0005328:693-712 | Msa1342270:intergenic | 65.0% | |
| GGTGCCCGGGATGGATCATG+CGG | - | tig0005328:1900-1919 | Msa1342270:CDS | 65.0% | |
| GTGCCCGGGATGGATCATGC+GGG | - | tig0005328:1901-1920 | Msa1342270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0005328 | gene | 360 | 1936 | 360 | ID=Msa1342270;Name=Msa1342270 |
| tig0005328 | mRNA | 360 | 1936 | 360 | ID=Msa1342270-mRNA-1;Parent=Msa1342270;Name=Msa1342270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|6|0|256 |
| tig0005328 | exon | 360 | 443 | 360 | ID=Msa1342270-mRNA-1:exon:3536;Parent=Msa1342270-mRNA-1 |
| tig0005328 | exon | 522 | 587 | 522 | ID=Msa1342270-mRNA-1:exon:3535;Parent=Msa1342270-mRNA-1 |
| tig0005328 | exon | 1072 | 1144 | 1072 | ID=Msa1342270-mRNA-1:exon:3534;Parent=Msa1342270-mRNA-1 |
| tig0005328 | exon | 1224 | 1399 | 1224 | ID=Msa1342270-mRNA-1:exon:3533;Parent=Msa1342270-mRNA-1 |
| tig0005328 | exon | 1491 | 1688 | 1491 | ID=Msa1342270-mRNA-1:exon:3532;Parent=Msa1342270-mRNA-1 |
| tig0005328 | exon | 1766 | 1936 | 1766 | ID=Msa1342270-mRNA-1:exon:3531;Parent=Msa1342270-mRNA-1 |
| tig0005328 | CDS | 1766 | 1936 | 1766 | ID=Msa1342270-mRNA-1:cds;Parent=Msa1342270-mRNA-1 |
| tig0005328 | CDS | 1491 | 1688 | 1491 | ID=Msa1342270-mRNA-1:cds;Parent=Msa1342270-mRNA-1 |
| tig0005328 | CDS | 1224 | 1399 | 1224 | ID=Msa1342270-mRNA-1:cds;Parent=Msa1342270-mRNA-1 |
| tig0005328 | CDS | 1072 | 1144 | 1072 | ID=Msa1342270-mRNA-1:cds;Parent=Msa1342270-mRNA-1 |
| tig0005328 | CDS | 522 | 587 | 522 | ID=Msa1342270-mRNA-1:cds;Parent=Msa1342270-mRNA-1 |
| tig0005328 | CDS | 360 | 443 | 360 | ID=Msa1342270-mRNA-1:cds;Parent=Msa1342270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
