Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386440 | XP_003609889.1 | 94.521 | 584 | 21 | 5 | 1 | 583 | 1 | 574 | 0.0 | 1011 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386440 | sp|Q9LI74|CHUP1_ARATH | 48.106 | 264 | 136 | 1 | 303 | 565 | 718 | 981 | 7.20e-81 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386440 | G7JR19 | 94.521 | 584 | 21 | 5 | 1 | 583 | 1 | 574 | 0.0 | 1011 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021710 | Msa1386440 | 0.808168 | 3.535427e-50 | -8.615850e-47 |
| Msa0116950 | Msa1386440 | 0.805678 | 1.188528e-49 | -8.615850e-47 |
| Msa1386440 | Msa1401000 | 0.803069 | 4.156790e-49 | -8.615850e-47 |
| Msa1386440 | Msa1465410 | 0.802725 | 4.895980e-49 | -8.615850e-47 |
| Msa0612880 | Msa1386440 | 0.812750 | 3.622528e-51 | -8.615850e-47 |
| Msa0756440 | Msa1386440 | 0.805211 | 1.489274e-49 | -8.615850e-47 |
| Msa0791920 | Msa1386440 | 0.970759 | 4.154229e-132 | -8.615850e-47 |
| Msa0160470 | Msa1386440 | 0.804560 | 2.037276e-49 | -8.615850e-47 |
| Msa0178440 | Msa1386440 | 0.800850 | 1.187884e-48 | -8.615850e-47 |
| Msa0193270 | Msa1386440 | 0.800848 | 1.188586e-48 | -8.615850e-47 |
| Msa0385870 | Msa1386440 | 0.803789 | 2.947598e-49 | -8.615850e-47 |
| Msa1022660 | Msa1386440 | 0.800206 | 1.606600e-48 | -8.615850e-47 |
| Msa1073140 | Msa1386440 | 0.803545 | 3.312615e-49 | -8.615850e-47 |
| Msa0272990 | Msa1386440 | 0.841463 | 4.679860e-58 | -8.615850e-47 |
| Msa0335860 | Msa1386440 | 0.805645 | 1.207847e-49 | -8.615850e-47 |
| Msa1129660 | Msa1386440 | 0.805651 | 1.204553e-49 | -8.615850e-47 |
| Msa1199690 | Msa1386440 | 0.800293 | 1.542342e-48 | -8.615850e-47 |
| Msa1209650 | Msa1386440 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
| Msa1219440 | Msa1386440 | 0.970789 | 3.732615e-132 | -8.615850e-47 |
| Msa0500490 | Msa1386440 | 0.802515 | 5.409738e-49 | -8.615850e-47 |
| Msa0591260 | Msa1386440 | 0.801526 | 8.636868e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386440 | MtrunA17_Chr4g0069431 | 94.521 | 584 | 21 | 5 | 1 | 583 | 1 | 574 | 0.0 | 1011 |
| Msa1386440 | MtrunA17_Chr1g0151531 | 42.857 | 406 | 210 | 6 | 168 | 563 | 352 | 745 | 6.43e-92 | 298 |
| Msa1386440 | MtrunA17_Chr5g0422391 | 46.591 | 264 | 141 | 0 | 303 | 566 | 716 | 979 | 4.33e-81 | 274 |
| Msa1386440 | MtrunA17_Chr4g0045981 | 46.816 | 267 | 136 | 3 | 301 | 565 | 345 | 607 | 3.04e-79 | 262 |
| Msa1386440 | MtrunA17_Chr1g0198861 | 44.867 | 263 | 144 | 1 | 304 | 566 | 706 | 967 | 1.13e-76 | 262 |
| Msa1386440 | MtrunA17_Chr5g0430701 | 44.361 | 266 | 143 | 3 | 300 | 564 | 157 | 418 | 1.43e-71 | 236 |
| Msa1386440 | MtrunA17_Chr4g0047791 | 27.727 | 220 | 133 | 7 | 344 | 552 | 543 | 747 | 2.25e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386440 | AT1G48280.1 | 53.565 | 519 | 219 | 7 | 77 | 578 | 41 | 554 | 7.74e-155 | 456 |
| Msa1386440 | AT3G25690.3 | 48.106 | 264 | 136 | 1 | 303 | 565 | 577 | 840 | 7.32e-83 | 277 |
| Msa1386440 | AT3G25690.1 | 48.106 | 264 | 136 | 1 | 303 | 565 | 718 | 981 | 7.32e-82 | 277 |
| Msa1386440 | AT3G25690.2 | 48.106 | 264 | 136 | 1 | 303 | 565 | 718 | 981 | 7.32e-82 | 277 |
| Msa1386440 | AT3G25690.6 | 48.106 | 264 | 136 | 1 | 303 | 565 | 718 | 981 | 7.32e-82 | 277 |
| Msa1386440 | AT3G25690.4 | 48.106 | 264 | 136 | 1 | 303 | 565 | 718 | 981 | 7.32e-82 | 277 |
| Msa1386440 | AT3G25690.5 | 48.106 | 264 | 136 | 1 | 303 | 565 | 720 | 983 | 8.22e-82 | 276 |
| Msa1386440 | AT4G18570.1 | 46.296 | 270 | 138 | 3 | 301 | 565 | 351 | 618 | 3.45e-77 | 257 |
| Msa1386440 | AT1G07120.1 | 39.630 | 270 | 156 | 3 | 304 | 572 | 129 | 392 | 6.40e-63 | 212 |
| Msa1386440 | AT4G18570.2 | 43.256 | 215 | 115 | 3 | 301 | 510 | 351 | 563 | 8.58e-54 | 193 |
| Msa1386440 | AT1G07120.2 | 38.071 | 197 | 119 | 2 | 304 | 499 | 129 | 323 | 9.49e-41 | 150 |
| Msa1386440 | AT4G04980.1 | 24.549 | 277 | 177 | 8 | 304 | 557 | 591 | 858 | 1.12e-12 | 71.6 |
| Msa1386440 | AT4G04980.3 | 24.549 | 277 | 177 | 8 | 304 | 557 | 435 | 702 | 3.46e-12 | 69.7 |
Find 154 sgRNAs with CRISPR-Local
Find 571 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTGTCCTGATTCTTTA+AGG | 0.088834 | tig0020816:+59511 | None:intergenic |
| GAGACTCTATTAACAATTTC+TGG | 0.171556 | tig0020816:+60560 | None:intergenic |
| CTCTCGGCCTATGGCAAAAT+TGG | 0.210477 | tig0020816:-59576 | Msa1386440:CDS |
| CATTAATGGCCTTATAAATA+AGG | 0.231153 | tig0020816:-59263 | Msa1386440:CDS |
| AATTGGTACCTTGGCTTTCA+TGG | 0.247273 | tig0020816:+67781 | None:intergenic |
| CACCATTCACAAATGAATTT+AGG | 0.252788 | tig0020816:+67812 | None:intergenic |
| CATGGTTATGATTCTGAAAA+TGG | 0.253385 | tig0020816:+60757 | None:intergenic |
| CGTCAACAACCTTATTTATA+AGG | 0.256299 | tig0020816:+59254 | None:intergenic |
| ATTGGTGGTGGCGGAGGTGG+TGG | 0.265734 | tig0020816:+59602 | None:intergenic |
| AGGTGGCATGAGGCAGTGGC+TGG | 0.266132 | tig0020816:+59625 | None:intergenic |
| AGGAATACTTAAAATATATT+AGG | 0.267972 | tig0020816:+67983 | None:intergenic |
| AATAATCTTACTTGTCTAAT+AGG | 0.277303 | tig0020816:+58702 | None:intergenic |
| GGAATTGGTGGTGGCGGAGG+TGG | 0.301235 | tig0020816:+59599 | None:intergenic |
| TTTGAATTGTTCTTCATGTC+TGG | 0.303138 | tig0020816:+60497 | None:intergenic |
| ATTCGTGAAATTACAAGTTT+AGG | 0.304601 | tig0020816:-59662 | Msa1386440:CDS |
| TATATTGATAATTGATAATT+CGG | 0.309935 | tig0020816:-57176 | Msa1386440:three_prime_UTR |
| CCTGCACAAACAAAGAAAAT+TGG | 0.312860 | tig0020816:+67764 | None:intergenic |
| AAGAGTAAAAGCTTCTTCTA+AGG | 0.327104 | tig0020816:-60606 | Msa1386440:CDS |
| GGTGGTGGCGGAGGTGGTGG+AGG | 0.332939 | tig0020816:+59605 | None:intergenic |
| GTTTCATTCCTTAAAGAATC+AGG | 0.333152 | tig0020816:-59519 | Msa1386440:CDS |
| AAGTTTGTTGATTGGCTTGA+TGG | 0.337776 | tig0020816:-59202 | Msa1386440:CDS |
| TAAGCTACTAACTTCCCTTT+TGG | 0.338096 | tig0020816:+57144 | None:intergenic |
| ACAAAAGGGGAGTTCATTAA+TGG | 0.342658 | tig0020816:-59277 | Msa1386440:CDS |
| TGATGTTTCAACACACTTCT+TGG | 0.345150 | tig0020816:+60698 | None:intergenic |
| TTGATTCAATTCATCCTTCA+AGG | 0.346025 | tig0020816:+60244 | None:intergenic |
| GTTGGAGTTGGAGCTGGAGC+TGG | 0.350119 | tig0020816:+59701 | None:intergenic |
| ACTGCGTGGATGCTTGATTC+AGG | 0.355659 | tig0020816:-58522 | Msa1386440:CDS |
| GAAGGAGAAGAAAGAGTTGC+TGG | 0.360740 | tig0020816:-60321 | Msa1386440:CDS |
| AAACGTGTTGTTGCTGTTTG+TGG | 0.362608 | tig0020816:+60629 | None:intergenic |
| GTGGAGGTGGCATGAGGCAG+TGG | 0.364724 | tig0020816:+59621 | None:intergenic |
| GGTGGCGGAGGTGGTGGAGG+TGG | 0.364902 | tig0020816:+59608 | None:intergenic |
| AGAGTATACATCAAGTTCTT+AGG | 0.367159 | tig0020816:-67591 | Msa1386440:five_prime_UTR |
| TGACAAATTGGAAATGTCTA+AGG | 0.368724 | tig0020816:-59771 | Msa1386440:CDS |
| ATGGCTTGGAAAGGATTTCT+TGG | 0.371200 | tig0020816:-67627 | Msa1386440:five_prime_UTR |
| GAAGCTAAGATATCAGCTTT+TGG | 0.374043 | tig0020816:-60155 | Msa1386440:CDS |
| ACTTTCAACCTCTTCTTCAA+TGG | 0.375273 | tig0020816:+60436 | None:intergenic |
| ATTCGGTACTTTAATCCAAA+AGG | 0.375913 | tig0020816:-57159 | Msa1386440:three_prime_UTR |
| GGACTTTGGCGTTCTCCAAT+TGG | 0.376486 | tig0020816:+59824 | None:intergenic |
| CTGTCTCACAATCTAGGAAT+AGG | 0.388636 | tig0020816:-57379 | Msa1386440:three_prime_UTR |
| TCTTTCTTCTCCTTCACATC+AGG | 0.396842 | tig0020816:+60329 | None:intergenic |
| TGTCTTTAAATTTAGGACTT+TGG | 0.399296 | tig0020816:+59810 | None:intergenic |
| TGAGAGTTGGAAATGTATAA+TGG | 0.399847 | tig0020816:+67889 | None:intergenic |
| TTTGTAGTTTGCTGGAGGTT+TGG | 0.400853 | tig0020816:-57686 | Msa1386440:intron |
| TAGAGAAGGTGAAGTGGCTA+AGG | 0.401408 | tig0020816:-60399 | Msa1386440:CDS |
| AGTGCACACAATAGCATTGT+AGG | 0.404091 | tig0020816:-59443 | Msa1386440:CDS |
| AAGTTTGCAGTCTGAGGTTA+AGG | 0.405435 | tig0020816:-60267 | Msa1386440:CDS |
| CTAGCTACACATGGAATGTC+AGG | 0.416729 | tig0020816:+58743 | None:intergenic |
| TTGTTGCTCCTCCGCGGCGA+AGG | 0.418429 | tig0020816:-60370 | Msa1386440:CDS |
| TGAAACAGTTGGACAATTGC+AGG | 0.418639 | tig0020816:+59536 | None:intergenic |
| GCCATAGGCCGAGAGGGAAT+TGG | 0.418891 | tig0020816:+59584 | None:intergenic |
| ATCGCATCAGCTTTCTTCTC+AGG | 0.420283 | tig0020816:+58836 | None:intergenic |
| GTCTGAGGTTAAGGCCTTGA+AGG | 0.428726 | tig0020816:-60258 | Msa1386440:CDS |
| ACCAATTCCCTCTCGGCCTA+TGG | 0.432303 | tig0020816:-59585 | Msa1386440:CDS |
| GGGAGGACATTCAAACAAAA+GGG | 0.432637 | tig0020816:-59291 | Msa1386440:CDS |
| GTGGTTGTAGTTGTTGATGT+TGG | 0.441751 | tig0020816:+60722 | None:intergenic |
| AGGGAGGACATTCAAACAAA+AGG | 0.445457 | tig0020816:-59292 | Msa1386440:CDS |
| GAGGGAATTGGTGGTGGCGG+AGG | 0.446478 | tig0020816:+59596 | None:intergenic |
| CGAGACCCTGCTAGGTGTCC+TGG | 0.447818 | tig0020816:+57619 | None:intergenic |
| TCAAGATTCTCTTCTACTAC+AGG | 0.451119 | tig0020816:-58279 | Msa1386440:CDS |
| CACCTAAATTCATTTGTGAA+TGG | 0.451445 | tig0020816:-67814 | Msa1386440:five_prime_UTR |
| TTGGAGTTGGAGCTGGAGCT+GGG | 0.452806 | tig0020816:+59702 | None:intergenic |
| TAGCAGACTTATCCATGGAT+TGG | 0.458930 | tig0020816:+57417 | None:intergenic |
| CAATCTAGGAATAGGATCTT+CGG | 0.459623 | tig0020816:-57371 | Msa1386440:three_prime_UTR |
| GGTGGCATGAGGCAGTGGCT+GGG | 0.460676 | tig0020816:+59626 | None:intergenic |
| AACAAAGAAAATTGGTACCT+TGG | 0.461509 | tig0020816:+67772 | None:intergenic |
| TATAATGGAGGAGAAGGCTA+TGG | 0.463155 | tig0020816:+67904 | None:intergenic |
| CTATTCCTAGATTGTGAGAC+AGG | 0.465500 | tig0020816:+57380 | None:intergenic |
| ACGTCCTCAAGTTTGTTGAT+TGG | 0.467193 | tig0020816:-59210 | Msa1386440:CDS |
| GAGAATCTTGACTAGATTCT+CGG | 0.472953 | tig0020816:+58291 | None:intergenic |
| GCATGACTCGGTGTTGGAGT+TGG | 0.476882 | tig0020816:+59689 | None:intergenic |
| TACAGCCTGTCTCACAATCT+AGG | 0.480676 | tig0020816:-57385 | Msa1386440:three_prime_UTR |
| TTCGGTACTTTAATCCAAAA+GGG | 0.488365 | tig0020816:-57158 | Msa1386440:three_prime_UTR |
| CTCGGTGTTGGAGTTGGAGC+TGG | 0.490223 | tig0020816:+59695 | None:intergenic |
| ACAACAAACAAGTGAAAACT+TGG | 0.494418 | tig0020816:-68013 | Msa1386440:five_prime_UTR |
| TTGTGTGCACTGTTAGCTAT+CGG | 0.496979 | tig0020816:+59455 | None:intergenic |
| TGGCACTAGTAGTACTAGAA+AGG | 0.500083 | tig0020816:-60135 | Msa1386440:intron |
| AAAATTGGCCAACACTCAAA+AGG | 0.501078 | tig0020816:-59561 | Msa1386440:CDS |
| CGAGAGGGAATTGGTGGTGG+CGG | 0.501878 | tig0020816:+59593 | None:intergenic |
| TTCTCGGTCTGAATTTCGAA+TGG | 0.502669 | tig0020816:+58307 | None:intergenic |
| AAATAAGTGATTCCCTTTGA+AGG | 0.502778 | tig0020816:+67963 | None:intergenic |
| TAAACTTGTAATTTCACGAA+TGG | 0.508116 | tig0020816:+59664 | None:intergenic |
| GGCCGAGAGGGAATTGGTGG+TGG | 0.508843 | tig0020816:+59590 | None:intergenic |
| TACTAATGGTTACAAAATGT+TGG | 0.514691 | tig0020816:-57541 | Msa1386440:three_prime_UTR |
| CGTGTACCAGGACACCTAGC+AGG | 0.519130 | tig0020816:-57625 | Msa1386440:CDS |
| TCTTGTTGATGATGATGAAA+TGG | 0.519904 | tig0020816:+60535 | None:intergenic |
| ACCATTTATGCAGATAAAGC+AGG | 0.520291 | tig0020816:-58384 | Msa1386440:intron |
| CATTCACAAATGAATTTAGG+TGG | 0.520837 | tig0020816:+67815 | None:intergenic |
| AAATATTTGATCATGAGAGT+TGG | 0.521188 | tig0020816:+67876 | None:intergenic |
| TGAATGAAGAAGGAGCCAAT+TGG | 0.521786 | tig0020816:-59839 | Msa1386440:intron |
| ACAAGAGATTTCATCTTACA+AGG | 0.523079 | tig0020816:-58771 | Msa1386440:CDS |
| TCTTTAAGGAATGAAACAGT+TGG | 0.523899 | tig0020816:+59525 | None:intergenic |
| GAATTGTTCTTCATGTCTGG+AGG | 0.525161 | tig0020816:+60500 | None:intergenic |
| TAAATTCATTTGTGAATGGT+GGG | 0.525379 | tig0020816:-67810 | Msa1386440:five_prime_UTR |
| GAAATGTATAATGGAGGAGA+AGG | 0.526603 | tig0020816:+67898 | None:intergenic |
| TGTTAAATCCATTGAAGAAG+AGG | 0.527490 | tig0020816:-60444 | Msa1386440:CDS |
| CGCCACCACCAATTCCCTCT+CGG | 0.529784 | tig0020816:-59592 | Msa1386440:CDS |
| TCTCACAAGGGTAGTAGAGA+AGG | 0.531436 | tig0020816:-60413 | Msa1386440:CDS |
| TCCGCGGCGAAGGAGGATTG+AGG | 0.532951 | tig0020816:-60360 | Msa1386440:CDS |
| CTAAATTCATTTGTGAATGG+TGG | 0.536021 | tig0020816:-67811 | Msa1386440:five_prime_UTR |
| GTTTGCTGGAGGTTTGGACT+CGG | 0.537152 | tig0020816:-57680 | Msa1386440:CDS |
| TCACAAAATCCTCTGAGTGA+GGG | 0.540222 | tig0020816:+57452 | None:intergenic |
| TCACGAATGGCCGCATGACT+CGG | 0.541366 | tig0020816:+59677 | None:intergenic |
| TGATGGTGAACTATCCACTT+TGG | 0.546580 | tig0020816:-59185 | Msa1386440:intron |
| TTCACAAAATCCTCTGAGTG+AGG | 0.546846 | tig0020816:+57451 | None:intergenic |
| TATACATCAAGTTCTTAGGC+AGG | 0.550183 | tig0020816:-67587 | Msa1386440:intron |
| AGAAAGTAAACTCCAATCCA+TGG | 0.551083 | tig0020816:-57429 | Msa1386440:three_prime_UTR |
| GAGATAAGACAACGTGTACC+AGG | 0.551315 | tig0020816:-57637 | Msa1386440:CDS |
| GAATCAAGCATCCACGCAGT+TGG | 0.551515 | tig0020816:+58525 | None:intergenic |
| TTTGTTGGCATGGCTTGGAA+AGG | 0.552024 | tig0020816:-67636 | Msa1386440:five_prime_UTR |
| ATAATGGAGGAGAAGGCTAT+GGG | 0.552920 | tig0020816:+67905 | None:intergenic |
| GGTTGTTGACGCGTCCTATG+TGG | 0.553927 | tig0020816:-59242 | Msa1386440:CDS |
| TTTCATAGCAGACTTATCCA+TGG | 0.554882 | tig0020816:+57412 | None:intergenic |
| GAGGTGGTGGAGGTGGCATG+AGG | 0.568430 | tig0020816:+59615 | None:intergenic |
| CAAGATTCTCTTCTACTACA+GGG | 0.570485 | tig0020816:-58278 | Msa1386440:CDS |
| TTTCAACACACTTCTTGGTG+TGG | 0.571663 | tig0020816:+60703 | None:intergenic |
| TCAATCCTCCTTCGCCGCGG+AGG | 0.576166 | tig0020816:+60362 | None:intergenic |
| CTGCTAAAAGATGAGCCGAT+CGG | 0.580631 | tig0020816:+59408 | None:intergenic |
| GATCAAAAGTTTGCAGTCTG+AGG | 0.581358 | tig0020816:-60273 | Msa1386440:CDS |
| AAAGTTCTCGAGACCCTGCT+AGG | 0.581934 | tig0020816:+57611 | None:intergenic |
| GGCATGAGGCAGTGGCTGGG+TGG | 0.585654 | tig0020816:+59629 | None:intergenic |
| TCTTAGCTTCAGCAGAGGCA+AGG | 0.585870 | tig0020816:+60168 | None:intergenic |
| TTGGCAGAAACTTACCAAAG+TGG | 0.589687 | tig0020816:+59171 | None:intergenic |
| GACACAAAGAAAGACTTGAA+AGG | 0.597706 | tig0020816:-59497 | Msa1386440:CDS |
| GGGTAGTAGAGAAGGTGAAG+TGG | 0.599882 | tig0020816:-60405 | Msa1386440:CDS |
| ATGGCCGCATGACTCGGTGT+TGG | 0.600205 | tig0020816:+59683 | None:intergenic |
| ATAGGCCGAGAGGGAATTGG+TGG | 0.604197 | tig0020816:+59587 | None:intergenic |
| AGACATGAAGAACAATTCAA+AGG | 0.607109 | tig0020816:-60495 | Msa1386440:CDS |
| GTACATGAAAAGATTGACAA+TGG | 0.611795 | tig0020816:-58339 | Msa1386440:CDS |
| CCATTATTTCCAGATTAGGG+AGG | 0.612869 | tig0020816:-59308 | Msa1386440:intron |
| AACTCCAACACCGAGTCATG+CGG | 0.613679 | tig0020816:-59687 | Msa1386440:CDS |
| AGAGGTTGAAAGTTCTCACA+AGG | 0.614576 | tig0020816:-60426 | Msa1386440:CDS |
| ATTCACAAATGAATTTAGGT+GGG | 0.617133 | tig0020816:+67816 | None:intergenic |
| GAGTTGGAAATGTATAATGG+AGG | 0.635185 | tig0020816:+67892 | None:intergenic |
| GCGGCGAAGGAGGATTGAGG+AGG | 0.642553 | tig0020816:-60357 | Msa1386440:CDS |
| AGGAGAAATTCAAAACCGAT+CGG | 0.644632 | tig0020816:-59423 | Msa1386440:CDS |
| TCCTCAATCCTCCTTCGCCG+CGG | 0.645515 | tig0020816:+60359 | None:intergenic |
| TGATTCAGGAATATCAAGCA+AGG | 0.648011 | tig0020816:-58508 | Msa1386440:intron |
| GTGTACCAGGACACCTAGCA+GGG | 0.652467 | tig0020816:-57624 | Msa1386440:CDS |
| GGACTAATCCATGAAAGCCA+AGG | 0.655987 | tig0020816:-67789 | Msa1386440:five_prime_UTR |
| ACTCTATTAACAATTTCTGG+TGG | 0.657904 | tig0020816:+60563 | None:intergenic |
| GGAGGATGATCCTGATGTGA+AGG | 0.659226 | tig0020816:-60339 | Msa1386440:CDS |
| TTGTTGTTGTTGCTCCTCCG+CGG | 0.661878 | tig0020816:-60376 | Msa1386440:CDS |
| GAGGTTGAAAGTTCTCACAA+GGG | 0.663825 | tig0020816:-60425 | Msa1386440:CDS |
| GGAGGACATTCAAACAAAAG+GGG | 0.668018 | tig0020816:-59290 | Msa1386440:CDS |
| AGAGTTGCTGGAGAAGCTTG+AGG | 0.669222 | tig0020816:-60309 | Msa1386440:CDS |
| CAAGCCAATCAACAAACTTG+AGG | 0.672914 | tig0020816:+59206 | None:intergenic |
| TAGCTACACATGGAATGTCA+GGG | 0.673873 | tig0020816:+58744 | None:intergenic |
| TGATATCTTAGCTTCAGCAG+AGG | 0.675148 | tig0020816:+60163 | None:intergenic |
| TGTACAACATTCCAACTGCG+TGG | 0.679840 | tig0020816:-58536 | Msa1386440:CDS |
| GACGTCTTCAATGTCCACAT+AGG | 0.698223 | tig0020816:+59228 | None:intergenic |
| GAAAGCTGATGCGATGCGTG+AGG | 0.701618 | tig0020816:-58828 | Msa1386440:CDS |
| TAATGGAGGAGAAGGCTATG+GGG | 0.702499 | tig0020816:+67906 | None:intergenic |
| ATCGTTGTGATAGGTCTGAG+CGG | 0.705998 | tig0020816:-58611 | Msa1386440:intron |
| AGTATGAAACCCTCACTCAG+AGG | 0.713316 | tig0020816:-57461 | Msa1386440:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATTTAAA+TGG | - | tig0020816:63018-63037 | Msa1386440:intron | 0.0% |
| !! | TACAATCAAATTATTAAAAT+TGG | - | tig0020816:58439-58458 | Msa1386440:intron | 10.0% |
| !!! | AAATATTTAAAATAAAGAAG+AGG | - | tig0020816:58845-58864 | Msa1386440:CDS | 10.0% |
| !!! | AAATATTTAAAATAAAGAAG+AGG | - | tig0020816:58845-58864 | Msa1386440:CDS | 10.0% |
| !!! | AGTTTTATAGTTTTTTTTAA+TGG | + | tig0020816:59056-59075 | None:intergenic | 10.0% |
| !! | TTAAAAAAATCATTTGAAAA+TGG | + | tig0020816:59170-59189 | None:intergenic | 10.0% |
| !! | GATATTAAAAAAATTGATAA+AGG | - | tig0020816:59344-59363 | Msa1386440:intron | 10.0% |
| !!! | ATTGATCATTTAAATTATTT+TGG | + | tig0020816:59382-59401 | None:intergenic | 10.0% |
| !!! | TAAATCATTTTGATAAATAT+TGG | - | tig0020816:59476-59495 | Msa1386440:CDS | 10.0% |
| !! | TGATATATTAATATGATATT+AGG | - | tig0020816:59841-59860 | Msa1386440:intron | 10.0% |
| !!! | ATATAATTATTTTTTTGACA+AGG | - | tig0020816:60719-60738 | Msa1386440:CDS | 10.0% |
| !! | AAAATCAAATTTATAAAAGT+CGG | + | tig0020816:61015-61034 | None:intergenic | 10.0% |
| !!! | TTAGTAAAACATAAATTTTA+TGG | + | tig0020816:61998-62017 | None:intergenic | 10.0% |
| !! | ACTAAAAAAAAAAAACAAAA+AGG | + | tig0020816:62638-62657 | None:intergenic | 10.0% |
| !!! | TTGTTTTTTTTTTTTAGTTT+TGG | - | tig0020816:62640-62659 | Msa1386440:intron | 10.0% |
| !! | AACATAATATGAATATATAA+AGG | - | tig0020816:62705-62724 | Msa1386440:intron | 10.0% |
| !!! | AACATTCTATTTTATTTTTT+AGG | - | tig0020816:62852-62871 | Msa1386440:intron | 10.0% |
| !!! | ACATTCTATTTTATTTTTTA+GGG | - | tig0020816:62853-62872 | Msa1386440:intron | 10.0% |
| !!! | TAAATAAGTATTTTGTAATA+AGG | + | tig0020816:62894-62913 | None:intergenic | 10.0% |
| !! | AGAAAAATATATAAATAAAG+GGG | - | tig0020816:63545-63564 | Msa1386440:intron | 10.0% |
| !!! | ATTTTTTTTAGTAACTTTTA+AGG | - | tig0020816:66941-66960 | Msa1386440:intron | 10.0% |
| !!! | TATTAGACTTAAATTTTTAA+TGG | + | tig0020816:67115-67134 | None:intergenic | 10.0% |
| !! | ATAACAATAATTTAAGAAAA+TGG | + | tig0020816:67231-67250 | None:intergenic | 10.0% |
| !!! | TATATTGATAATTGATAATT+CGG | - | tig0020816:67990-68009 | Msa1386440:five_prime_UTR | 10.0% |
| !! | AGGAATACTTAAAATATATT+AGG | + | tig0020816:57186-57205 | None:intergenic | 15.0% |
| !! | TATAGATGAATTATTATGAA+TGG | + | tig0020816:57436-57455 | None:intergenic | 15.0% |
| !!! | TCAAATGATTTTTTTAATCA+CGG | - | tig0020816:59173-59192 | Msa1386440:intron | 15.0% |
| !! | CGATTGAAAAATAATAATTA+AGG | + | tig0020816:59248-59267 | None:intergenic | 15.0% |
| !! | AACTTATAAAAATTGTAAGT+GGG | - | tig0020816:60002-60021 | Msa1386440:intron | 15.0% |
| !! | AAATAACATCATAGTAATTA+AGG | + | tig0020816:60863-60882 | None:intergenic | 15.0% |
| !!! | CAATTTTATACAAAAGTAAT+CGG | + | tig0020816:61550-61569 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTGAACTTTT+TGG | - | tig0020816:62017-62036 | Msa1386440:intron | 15.0% |
| !! | AATAAGACACAAAAATAAAA+TGG | - | tig0020816:62260-62279 | Msa1386440:intron | 15.0% |
| !!! | TATCATTTTTTTTTGTAAGA+GGG | + | tig0020816:62349-62368 | None:intergenic | 15.0% |
| !!! | ATATCATTTTTTTTTGTAAG+AGG | + | tig0020816:62350-62369 | None:intergenic | 15.0% |
| !!! | TATCATTAATTTTGAACAAA+GGG | + | tig0020816:62378-62397 | None:intergenic | 15.0% |
| !!! | ATATCATTAATTTTGAACAA+AGG | + | tig0020816:62379-62398 | None:intergenic | 15.0% |
| !! | TATCAAAATTATATCCATTA+GGG | + | tig0020816:62667-62686 | None:intergenic | 15.0% |
| !! | ATATCAAAATTATATCCATT+AGG | + | tig0020816:62668-62687 | None:intergenic | 15.0% |
| !!! | TTTGTGTTTTTTCTTTAAAA+TGG | + | tig0020816:62955-62974 | None:intergenic | 15.0% |
| !!! | GATCTATAATTTTAAACAAA+GGG | - | tig0020816:63207-63226 | Msa1386440:intron | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | tig0020816:63508-63527 | None:intergenic | 15.0% |
| !!! | GACACTTTTTTTTATAAAAT+GGG | - | tig0020816:63678-63697 | Msa1386440:intron | 15.0% |
| !!! | ATACATATATTGATCTTTTA+CGG | - | tig0020816:63745-63764 | Msa1386440:intron | 15.0% |
| !! | TAAGAATAAAGATTTCAAAA+TGG | - | tig0020816:64021-64040 | Msa1386440:intron | 15.0% |
| !!! | TTTTGTATGTCTTTAAATTT+AGG | + | tig0020816:65366-65385 | None:intergenic | 15.0% |
| !!! | GATCTTTTTAAAATATTGTT+TGG | - | tig0020816:66148-66167 | Msa1386440:intron | 15.0% |
| !!! | TATTTTAAGTATTCCTTCAA+AGG | - | tig0020816:57190-57209 | Msa1386440:three_prime_UTR | 20.0% |
| !!! | ATTTTAAGTATTCCTTCAAA+GGG | - | tig0020816:57191-57210 | Msa1386440:three_prime_UTR | 20.0% |
| !!! | TGTATGGTTTTTAGTTATAA+TGG | + | tig0020816:57829-57848 | None:intergenic | 20.0% |
| !! | TCAAAACATAAATGTATGTA+TGG | + | tig0020816:57845-57864 | None:intergenic | 20.0% |
| !! | TTCTTCATATCTTTCAAAAA+TGG | + | tig0020816:57934-57953 | None:intergenic | 20.0% |
| !! | AATACAATAATACCTACAAT+TGG | - | tig0020816:58057-58076 | Msa1386440:intron | 20.0% |
| !!! | AAATTATGCATGTTAATTTG+TGG | + | tig0020816:58466-58485 | None:intergenic | 20.0% |
| !! | AAATAGTTATGTTTCTCTAT+CGG | + | tig0020816:58711-58730 | None:intergenic | 20.0% |
| !! | ATAATAGAAAAAAATGCACA+AGG | - | tig0020816:59088-59107 | Msa1386440:intron | 20.0% |
| !! | TATTGATAAAGTGATTCTTA+TGG | - | tig0020816:59558-59577 | Msa1386440:CDS | 20.0% |
| !! | ATTGATAAAGTGATTCTTAT+GGG | - | tig0020816:59559-59578 | Msa1386440:CDS | 20.0% |
| !!! | TGATTGATAACTATAGTTAA+AGG | - | tig0020816:59746-59765 | Msa1386440:CDS | 20.0% |
| !!! | GATTGATAACTATAGTTAAA+GGG | - | tig0020816:59747-59766 | Msa1386440:CDS | 20.0% |
| !! | GATTGTTAAACAAAATTAAG+AGG | - | tig0020816:59937-59956 | Msa1386440:intron | 20.0% |
| !! | CAACTTATAAAAATTGTAAG+TGG | - | tig0020816:60001-60020 | Msa1386440:intron | 20.0% |
| !! | ACTTATAAAAATTGTAAGTG+GGG | - | tig0020816:60003-60022 | Msa1386440:intron | 20.0% |
| !! | TGCAAACTAATATTTAGTTA+TGG | + | tig0020816:60118-60137 | None:intergenic | 20.0% |
| !! | TATTTGGATGCATATATATT+TGG | + | tig0020816:60838-60857 | None:intergenic | 20.0% |
| !! | CATAGTAATTAAGGAATATT+TGG | + | tig0020816:60854-60873 | None:intergenic | 20.0% |
| !! | AAAACAAAATGAAAACATTC+AGG | + | tig0020816:60887-60906 | None:intergenic | 20.0% |
| !! | CTTCATTGAAATAACAAAAA+TGG | - | tig0020816:61389-61408 | Msa1386440:intron | 20.0% |
| !! | AAGTTTCTATTCTAGTATTT+AGG | + | tig0020816:61445-61464 | None:intergenic | 20.0% |
| !! | TATATGCACTATATACTAAT+TGG | - | tig0020816:61746-61765 | Msa1386440:intron | 20.0% |
| !!! | AATATAGTATTTCCTTTTCT+CGG | + | tig0020816:61970-61989 | None:intergenic | 20.0% |
| !!! | ATCATTTTTTTTTGTAAGAG+GGG | + | tig0020816:62348-62367 | None:intergenic | 20.0% |
| !! | CATAATAAAAATACGTGATA+TGG | - | tig0020816:62733-62752 | Msa1386440:intron | 20.0% |
| !! | ACATTCATTTGAACATAAAT+TGG | - | tig0020816:62789-62808 | Msa1386440:intron | 20.0% |
| !! | AAAACGGAAAAAAAATTATG+AGG | - | tig0020816:62824-62843 | Msa1386440:intron | 20.0% |
| !! | TTAACCCAAAAAAAACTTTA+AGG | - | tig0020816:62911-62930 | Msa1386440:intron | 20.0% |
| !!! | TTCTTTAAAATGGTTTCAAA+TGG | + | tig0020816:62945-62964 | None:intergenic | 20.0% |
| !!! | GGATCTATAATTTTAAACAA+AGG | - | tig0020816:63206-63225 | Msa1386440:intron | 20.0% |
| !! | TTGTACTTAACTATAACAAA+AGG | - | tig0020816:63389-63408 | Msa1386440:intron | 20.0% |
| !! | ATCTAATCTAGATTTAATTG+CGG | - | tig0020816:63414-63433 | Msa1386440:intron | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | tig0020816:63509-63528 | None:intergenic | 20.0% |
| !!! | GGACACTTTTTTTTATAAAA+TGG | - | tig0020816:63677-63696 | Msa1386440:intron | 20.0% |
| !! | AAAAAAGTTGGATATTGAAA+AGG | - | tig0020816:63978-63997 | Msa1386440:intron | 20.0% |
| !! | TTAATCAATCATTGTTTGAT+TGG | - | tig0020816:65173-65192 | Msa1386440:intron | 20.0% |
| !!! | TTTGAGATAGATACAATTTT+AGG | + | tig0020816:65270-65289 | None:intergenic | 20.0% |
| !! | AAAGTGTACATAAAACAAAA+TGG | - | tig0020816:66235-66254 | Msa1386440:intron | 20.0% |
| !! | AATAATCTTACTTGTCTAAT+AGG | + | tig0020816:66467-66486 | None:intergenic | 20.0% |
| !! | TACTAAAAAAAATACCTGAT+GGG | + | tig0020816:66934-66953 | None:intergenic | 20.0% |
| !! | TTACTAAAAAAAATACCTGA+TGG | + | tig0020816:66935-66954 | None:intergenic | 20.0% |
| !!! | AGACTTAAATTTTTAATGGA+TGG | + | tig0020816:67111-67130 | None:intergenic | 20.0% |
| !! | GATAATAAGTGAAAATGAAA+TGG | - | tig0020816:67305-67324 | Msa1386440:intron | 20.0% |
| !! | TACAAAAAATACAAAGAAAG+AGG | + | tig0020816:67416-67435 | None:intergenic | 20.0% |
| !!! | ATTTTTAATACTGCTACTAA+TGG | - | tig0020816:67611-67630 | Msa1386440:five_prime_UTR | 20.0% |
| ! | AAATATTTGATCATGAGAGT+TGG | + | tig0020816:57293-57312 | None:intergenic | 25.0% |
| !!! | ATATGTAGCTTTTTTCTTTG+TGG | + | tig0020816:57320-57339 | None:intergenic | 25.0% |
| ! | ATTCACAAATGAATTTAGGT+GGG | + | tig0020816:57353-57372 | None:intergenic | 25.0% |
| ! | TAAATTCATTTGTGAATGGT+GGG | - | tig0020816:57356-57375 | Msa1386440:three_prime_UTR | 25.0% |
| !!! | GTTTTTAGTTATAATGGACA+TGG | + | tig0020816:57823-57842 | None:intergenic | 25.0% |
| ! | TATGAAGAAGATGAACAAAA+AGG | - | tig0020816:57945-57964 | Msa1386440:intron | 25.0% |
| ! | ATGAAGAAGATGAACAAAAA+GGG | - | tig0020816:57946-57965 | Msa1386440:intron | 25.0% |
| ! | TAATAACTAGACCCAATTTA+AGG | + | tig0020816:57979-57998 | None:intergenic | 25.0% |
| ! | GCACATTTCTTTGTTAAAAT+TGG | + | tig0020816:58084-58103 | None:intergenic | 25.0% |
| !!! | TATTGTTTTGATCAGAAATG+TGG | + | tig0020816:58117-58136 | None:intergenic | 25.0% |
| ! | TCATGTATACCAAATGTATA+GGG | + | tig0020816:58548-58567 | None:intergenic | 25.0% |
| !!! | ATGTATTTGCTATATAGACT+TGG | + | tig0020816:58965-58984 | None:intergenic | 25.0% |
| !! | ATTTTATTCTTTACATCCAC+CGG | - | tig0020816:59307-59326 | Msa1386440:intron | 25.0% |
| !!! | ATATCGGTTAATTTTCATTC+CGG | + | tig0020816:59329-59348 | None:intergenic | 25.0% |
| !!! | TCATTTTGATAAATATTGGC+AGG | - | tig0020816:59480-59499 | Msa1386440:CDS | 25.0% |
| ! | TTGATAAAGTGATTCTTATG+GGG | - | tig0020816:59560-59579 | Msa1386440:CDS | 25.0% |
| !! | TCTAAATTCTTGCTATAAGA+AGG | + | tig0020816:59591-59610 | None:intergenic | 25.0% |
| ! | GTTATCAATCATTAACAAGA+GGG | + | tig0020816:59737-59756 | None:intergenic | 25.0% |
| ! | AGTTATCAATCATTAACAAG+AGG | + | tig0020816:59738-59757 | None:intergenic | 25.0% |
| ! | ATAACTATAGTTAAAGGGTA+AGG | - | tig0020816:59752-59771 | Msa1386440:CDS | 25.0% |
| ! | AGGGTAAGGAAAATAATTTA+CGG | - | tig0020816:59766-59785 | Msa1386440:CDS | 25.0% |
| !!! | CTACAAAGATTTTTTTTGAG+AGG | - | tig0020816:59807-59826 | Msa1386440:CDS | 25.0% |
| !!! | AATTTTGTTTAACAATCGAG+AGG | + | tig0020816:59934-59953 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAGAAAGTTATG+CGG | + | tig0020816:60056-60075 | None:intergenic | 25.0% |
| ! | AGTTATGGCTAATGATATTT+GGG | + | tig0020816:60103-60122 | None:intergenic | 25.0% |
| ! | TAGTTATGGCTAATGATATT+TGG | + | tig0020816:60104-60123 | None:intergenic | 25.0% |
| ! | CTTACTTAGTTATATACTTG+AGG | - | tig0020816:60139-60158 | Msa1386440:CDS | 25.0% |
| ! | TTTGTAAAAGATTATCTTCC+TGG | - | tig0020816:60269-60288 | Msa1386440:CDS | 25.0% |
| ! | TAAGACTATTACATAACATG+CGG | + | tig0020816:60936-60955 | None:intergenic | 25.0% |
| !! | TTTTTACCTAACTAATCTCT+TGG | + | tig0020816:61132-61151 | None:intergenic | 25.0% |
| !!! | TTTTCAAGACATTCTAATGA+TGG | + | tig0020816:61252-61271 | None:intergenic | 25.0% |
| ! | TTCTTAGGTGAAACTATTAA+TGG | + | tig0020816:61353-61372 | None:intergenic | 25.0% |
| ! | AGTCATATGAAATTTAGGAA+TGG | + | tig0020816:61599-61618 | None:intergenic | 25.0% |
| ! | GAGGAGAAATTTCAATTATT+GGG | + | tig0020816:61641-61660 | None:intergenic | 25.0% |
| ! | TGAGGAGAAATTTCAATTAT+TGG | + | tig0020816:61642-61661 | None:intergenic | 25.0% |
| !! | TTTGCATTGAGAAACAATTT+TGG | - | tig0020816:61662-61681 | Msa1386440:intron | 25.0% |
| ! | TATATAGTGCATATACATAG+AGG | + | tig0020816:61741-61760 | None:intergenic | 25.0% |
| ! | AAATATATATGTGCCAAAGT+TGG | - | tig0020816:61883-61902 | Msa1386440:intron | 25.0% |
| ! | ACCAATAAAATATCCAACTT+TGG | + | tig0020816:61899-61918 | None:intergenic | 25.0% |
| !! | TTATTGGTTGTATAGTATGA+AGG | - | tig0020816:61911-61930 | Msa1386440:intron | 25.0% |
| !! | TATTGGTTGTATAGTATGAA+GGG | - | tig0020816:61912-61931 | Msa1386440:intron | 25.0% |
| ! | CCAAATCAAATAAAGAACAA+GGG | + | tig0020816:62407-62426 | None:intergenic | 25.0% |
| ! | TGAACATAAATTGGTCATTA+AGG | - | tig0020816:62798-62817 | Msa1386440:intron | 25.0% |
| !!! | CATGCCTTAAAGTTTTTTTT+GGG | + | tig0020816:62918-62937 | None:intergenic | 25.0% |
| !!! | ACATGCCTTAAAGTTTTTTT+TGG | + | tig0020816:62919-62938 | None:intergenic | 25.0% |
| !!! | TTTGTGTTGTTTCTTTCTAA+TGG | + | tig0020816:63052-63071 | None:intergenic | 25.0% |
| ! | CCAATTTAAATAGAGAACAA+GGG | - | tig0020816:63178-63197 | Msa1386440:intron | 25.0% |
| !!! | ATATCAATTTTTTTGGTGAG+AGG | - | tig0020816:63235-63254 | Msa1386440:intron | 25.0% |
| !!! | TATCAATTTTTTTGGTGAGA+GGG | - | tig0020816:63236-63255 | Msa1386440:intron | 25.0% |
| !! | CTCTTATTTGTACTTGTTTA+CGG | - | tig0020816:63445-63464 | Msa1386440:intron | 25.0% |
| ! | TATATAAATAAAGGGGAAAG+TGG | - | tig0020816:63552-63571 | Msa1386440:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | tig0020816:63655-63674 | Msa1386440:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | tig0020816:63656-63675 | Msa1386440:intron | 25.0% |
| !! | TCTTTATTCTTATTTGCTCA+TGG | + | tig0020816:64013-64032 | None:intergenic | 25.0% |
| ! | AAGTCAATGATACACATATT+AGG | + | tig0020816:64063-64082 | None:intergenic | 25.0% |
| !!! | TTTTATTTATTCTACGTGTC+AGG | - | tig0020816:64290-64309 | Msa1386440:intron | 25.0% |
| !! | GTTCGTAAAAATACTTCTTT+TGG | + | tig0020816:64697-64716 | None:intergenic | 25.0% |
| !!! | AAGAAGTATTTTTACGAACA+AGG | - | tig0020816:64698-64717 | Msa1386440:intron | 25.0% |
| ! | AAAAATCAGATTCATTGCTA+AGG | + | tig0020816:65299-65318 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTTGAATGAAGA+AGG | - | tig0020816:65317-65336 | Msa1386440:intron | 25.0% |
| !! | TGTCTTTAAATTTAGGACTT+TGG | + | tig0020816:65359-65378 | None:intergenic | 25.0% |
| ! | AAAAATCATTGCTGACAAAT+TGG | - | tig0020816:65383-65402 | Msa1386440:intron | 25.0% |
| ! | TAAACTTGTAATTTCACGAA+TGG | + | tig0020816:65505-65524 | None:intergenic | 25.0% |
| ! | ATTCGTGAAATTACAAGTTT+AGG | - | tig0020816:65504-65523 | Msa1386440:intron | 25.0% |
| !!! | CATTAATGGCCTTATAAATA+AGG | - | tig0020816:65903-65922 | Msa1386440:intron | 25.0% |
| ! | TTTCTGCCAAAGTTATTTAT+TGG | - | tig0020816:66008-66027 | Msa1386440:intron | 25.0% |
| ! | CTATTTATGAACTACTGATA+TGG | - | tig0020816:66499-66518 | Msa1386440:intron | 25.0% |
| !! | AGTTCTAATAAGCATTTCAA+AGG | + | tig0020816:66744-66763 | None:intergenic | 25.0% |
| ! | TTATCTATGAAACATTGACA+TGG | + | tig0020816:67290-67309 | None:intergenic | 25.0% |
| ! | TGAAATGGTTGTAAAAGTTT+CGG | - | tig0020816:67320-67339 | Msa1386440:intron | 25.0% |
| !!! | ATACAAAGAAAGAGGTATTT+CGG | + | tig0020816:67408-67427 | None:intergenic | 25.0% |
| !!! | TTTTTTGTATCTTTTGAACC+AGG | - | tig0020816:67427-67446 | Msa1386440:intron | 25.0% |
| !!! | TTTATTGTTTTGTAGTTTGC+TGG | - | tig0020816:67472-67491 | Msa1386440:intron | 25.0% |
| ! | TACTAATGGTTACAAAATGT+TGG | - | tig0020816:67625-67644 | Msa1386440:five_prime_UTR | 25.0% |
| !! | CATGACTTTTACATTATTAG+AGG | + | tig0020816:67911-67930 | None:intergenic | 25.0% |
| ACAACAAACAAGTGAAAACT+TGG | - | tig0020816:57153-57172 | Msa1386440:three_prime_UTR | 30.0% | |
| AAATAAGTGATTCCCTTTGA+AGG | + | tig0020816:57206-57225 | None:intergenic | 30.0% | |
| TGAGAGTTGGAAATGTATAA+TGG | + | tig0020816:57280-57299 | None:intergenic | 30.0% | |
| CATTCACAAATGAATTTAGG+TGG | + | tig0020816:57354-57373 | None:intergenic | 30.0% | |
| CACCTAAATTCATTTGTGAA+TGG | - | tig0020816:57352-57371 | Msa1386440:three_prime_UTR | 30.0% | |
| CACCATTCACAAATGAATTT+AGG | + | tig0020816:57357-57376 | None:intergenic | 30.0% | |
| CTAAATTCATTTGTGAATGG+TGG | - | tig0020816:57355-57374 | Msa1386440:three_prime_UTR | 30.0% | |
| AACAAAGAAAATTGGTACCT+TGG | + | tig0020816:57397-57416 | None:intergenic | 30.0% | |
| ! | TGACATCAAAGAGATTTTGT+TGG | - | tig0020816:57515-57534 | Msa1386440:three_prime_UTR | 30.0% |
| AGAGTATACATCAAGTTCTT+AGG | - | tig0020816:57575-57594 | Msa1386440:exon | 30.0% | |
| TGGTGTTCACATATCTTTAT+AGG | - | tig0020816:57673-57692 | Msa1386440:CDS | 30.0% | |
| GCAAATATTAGTAAGTTAGC+TGG | - | tig0020816:57695-57714 | Msa1386440:intron | 30.0% | |
| !! | CTTCTTAGCAATTTTGCTAT+TGG | + | tig0020816:57908-57927 | None:intergenic | 30.0% |
| CAATAGCAAAATTGCTAAGA+AGG | - | tig0020816:57906-57925 | Msa1386440:intron | 30.0% | |
| ATTGGGTCTAGTTATTAGTT+AGG | - | tig0020816:57982-58001 | Msa1386440:intron | 30.0% | |
| GTTAAAATTGGTCCAATTGT+AGG | + | tig0020816:58072-58091 | None:intergenic | 30.0% | |
| ACAAAGAAATGTGCTAAATG+CGG | - | tig0020816:58090-58109 | Msa1386440:intron | 30.0% | |
| AAGTTTAACGTATATGCCAA+AGG | + | tig0020816:58371-58390 | None:intergenic | 30.0% | |
| GTACGTAGCATTACTTAAAT+GGG | + | tig0020816:58413-58432 | None:intergenic | 30.0% | |
| TGTACGTAGCATTACTTAAA+TGG | + | tig0020816:58414-58433 | None:intergenic | 30.0% | |
| CATGCATTTCTTATGAGTTA+TGG | - | tig0020816:58521-58540 | Msa1386440:CDS | 30.0% | |
| CATGTATACCAAATGTATAG+GGG | + | tig0020816:58547-58566 | None:intergenic | 30.0% | |
| GTCATGTATACCAAATGTAT+AGG | + | tig0020816:58549-58568 | None:intergenic | 30.0% | |
| TATGCTCAGATAAACGAAAA+AGG | + | tig0020816:58656-58675 | None:intergenic | 30.0% | |
| ACAAAAGGGGTCATTATTTA+GGG | + | tig0020816:58683-58702 | None:intergenic | 30.0% | |
| AACAAAAGGGGTCATTATTT+AGG | + | tig0020816:58684-58703 | None:intergenic | 30.0% | |
| ! | GCTTTTTACAGCATTAAGTA+AGG | - | tig0020816:58740-58759 | Msa1386440:CDS | 30.0% |
| !! | TAAGGAATTTGTTGTGACTA+TGG | - | tig0020816:58758-58777 | Msa1386440:CDS | 30.0% |
| !! | AAGGAATTTGTTGTGACTAT+GGG | - | tig0020816:58759-58778 | Msa1386440:CDS | 30.0% |
| !! | CTTTATCTTGAAGCTTTGTT+TGG | - | tig0020816:58992-59011 | Msa1386440:intron | 30.0% |
| ATTGCAAACCTCAAACTTAA+AGG | - | tig0020816:59404-59423 | Msa1386440:intron | 30.0% | |
| ATAAATATTGGCAGGAAAAG+TGG | - | tig0020816:59488-59507 | Msa1386440:CDS | 30.0% | |
| ACAAAATTCTCAAATCCGAT+AGG | + | tig0020816:59536-59555 | None:intergenic | 30.0% | |
| TGATAAAGTGATTCTTATGG+GGG | - | tig0020816:59561-59580 | Msa1386440:CDS | 30.0% | |
| ! | TAGATTCATCTTTTTGTGAG+TGG | - | tig0020816:59607-59626 | Msa1386440:CDS | 30.0% |
| ! | TGCACTTTTGCTTTATAAAG+TGG | - | tig0020816:59633-59652 | Msa1386440:CDS | 30.0% |
| ! | GCACTTTTGCTTTATAAAGT+GGG | - | tig0020816:59634-59653 | Msa1386440:CDS | 30.0% |
| ! | TCTTTGTAGAATGCGTATTT+TGG | + | tig0020816:59796-59815 | None:intergenic | 30.0% |
| ATCTCACCTTAATAATGCAT+CGG | - | tig0020816:59972-59991 | Msa1386440:intron | 30.0% | |
| TATAACCCGATGCATTATTA+AGG | + | tig0020816:59981-60000 | None:intergenic | 30.0% | |
| AAGACTATTACATAACATGC+GGG | + | tig0020816:60935-60954 | None:intergenic | 30.0% | |
| GAGACATTAAACATTATTCG+TGG | - | tig0020816:61064-61083 | Msa1386440:intron | 30.0% | |
| ACTAATCTCTTGGAAGTTTA+AGG | + | tig0020816:61122-61141 | None:intergenic | 30.0% | |
| ! | AAACTTCCAAGAGATTAGTT+AGG | - | tig0020816:61123-61142 | Msa1386440:intron | 30.0% |
| CAAGAATGCAAGACAAATTA+AGG | - | tig0020816:61226-61245 | Msa1386440:intron | 30.0% | |
| !!! | TGTGTCATTTGTGTTTTCTT+AGG | + | tig0020816:61368-61387 | None:intergenic | 30.0% |
| TGCGAAGTCATATGAAATTT+AGG | + | tig0020816:61604-61623 | None:intergenic | 30.0% | |
| ! | ATTGTTTCTCAATGCAAATG+AGG | + | tig0020816:61660-61679 | None:intergenic | 30.0% |
| TGATGACTATATGACTAAAG+TGG | + | tig0020816:61701-61720 | None:intergenic | 30.0% | |
| AGTCATATAGTCATCATCTA+TGG | - | tig0020816:61705-61724 | Msa1386440:intron | 30.0% | |
| ! | GCCAAAGTTGGATATTTTAT+TGG | - | tig0020816:61895-61914 | Msa1386440:intron | 30.0% |
| GGGAATCTGATATAAAACTA+AGG | - | tig0020816:61932-61951 | Msa1386440:intron | 30.0% | |
| !!! | TGTTACGCTTTTAGAATGAA+AGG | + | tig0020816:62045-62064 | None:intergenic | 30.0% |
| CTAAAGTCATGATCTGAATT+CGG | - | tig0020816:62162-62181 | Msa1386440:intron | 30.0% | |
| ACATGAACACAATATATCCT+AGG | + | tig0020816:62226-62245 | None:intergenic | 30.0% | |
| TAAGATGCTACTAGAGAAAA+CGG | + | tig0020816:62295-62314 | None:intergenic | 30.0% | |
| ! | CCCTTGTTCTTTATTTGATT+TGG | - | tig0020816:62404-62423 | Msa1386440:intron | 30.0% |
| GCCAAATCAAATAAAGAACA+AGG | + | tig0020816:62408-62427 | None:intergenic | 30.0% | |
| AACATGCCAGAAATTTGAAA+AGG | + | tig0020816:62442-62461 | None:intergenic | 30.0% | |
| ! | TAGATGTTTGCCACTTAAAA+CGG | - | tig0020816:62513-62532 | Msa1386440:intron | 30.0% |
| TATATGTTTGCCACTAGAAA+TGG | - | tig0020816:62570-62589 | Msa1386440:intron | 30.0% | |
| !!! | TTTTTAGTTTTGGTCCCTAA+TGG | - | tig0020816:62650-62669 | Msa1386440:intron | 30.0% |
| TTGGTCATTAAGGACAAAAA+CGG | - | tig0020816:62808-62827 | Msa1386440:intron | 30.0% | |
| GCCAATTTAAATAGAGAACA+AGG | - | tig0020816:63177-63196 | Msa1386440:intron | 30.0% | |
| CCCTTGTTCTCTATTTAAAT+TGG | + | tig0020816:63181-63200 | None:intergenic | 30.0% | |
| !!! | GGCAGACATATCAATTTTTT+TGG | - | tig0020816:63228-63247 | Msa1386440:intron | 30.0% |
| CGTAAACAAGTACAAATAAG+AGG | + | tig0020816:63447-63466 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | tig0020816:63504-63523 | None:intergenic | 30.0% | |
| GATGAAATCTATTGATCCAA+CGG | + | tig0020816:63837-63856 | None:intergenic | 30.0% | |
| !!! | ATCCAACTTTTTTAGACTTG+CGG | + | tig0020816:63971-63990 | None:intergenic | 30.0% |
| TGTATGAGTGTGAATATAGA+AGG | + | tig0020816:64241-64260 | None:intergenic | 30.0% | |
| ! | CATGGTTATGATTCTGAAAA+TGG | + | tig0020816:64412-64431 | None:intergenic | 30.0% |
| AAGAGTAAAAGCTTCTTCTA+AGG | - | tig0020816:64560-64579 | Msa1386440:intron | 30.0% | |
| ! | ACTCTATTAACAATTTCTGG+TGG | + | tig0020816:64606-64625 | None:intergenic | 30.0% |
| GAGACTCTATTAACAATTTC+TGG | + | tig0020816:64609-64628 | None:intergenic | 30.0% | |
| !! | TCTTGTTGATGATGATGAAA+TGG | + | tig0020816:64634-64653 | None:intergenic | 30.0% |
| TTTGAATTGTTCTTCATGTC+TGG | + | tig0020816:64672-64691 | None:intergenic | 30.0% | |
| AGACATGAAGAACAATTCAA+AGG | - | tig0020816:64671-64690 | Msa1386440:intron | 30.0% | |
| TGTTAAATCCATTGAAGAAG+AGG | - | tig0020816:64722-64741 | Msa1386440:intron | 30.0% | |
| TTGATTCAATTCATCCTTCA+AGG | + | tig0020816:64925-64944 | None:intergenic | 30.0% | |
| CAAGTTAACACTCTAAACTA+AGG | + | tig0020816:65204-65223 | None:intergenic | 30.0% | |
| !! | GTTTAGAGTGTTAACTTGTA+TGG | - | tig0020816:65206-65225 | Msa1386440:intron | 30.0% |
| TGACAAATTGGAAATGTCTA+AGG | - | tig0020816:65395-65414 | Msa1386440:intron | 30.0% | |
| AAAAAAAGAAGCTAATCCTG+AGG | - | tig0020816:65419-65438 | Msa1386440:intron | 30.0% | |
| GATTTAACAAAAATCACCTC+AGG | + | tig0020816:65438-65457 | None:intergenic | 30.0% | |
| ! | TCTTTAAGGAATGAAACAGT+TGG | + | tig0020816:65644-65663 | None:intergenic | 30.0% |
| GTTTCATTCCTTAAAGAATC+AGG | - | tig0020816:65647-65666 | Msa1386440:intron | 30.0% | |
| ! | CGTCAACAACCTTATTTATA+AGG | + | tig0020816:65915-65934 | None:intergenic | 30.0% |
| TGCCAAAGTTATTTATTGGT+GGG | - | tig0020816:66012-66031 | Msa1386440:intron | 30.0% | |
| CATATATATTAGCTGCATCA+AGG | + | tig0020816:66038-66057 | None:intergenic | 30.0% | |
| ! | TTTTCTCCTCAAAAGAAGTT+AGG | + | tig0020816:66174-66193 | None:intergenic | 30.0% |
| AGAAAATAAGTCAGACTAAG+CGG | - | tig0020816:66188-66207 | Msa1386440:intron | 30.0% | |
| ACAAGAGATTTCATCTTACA+AGG | - | tig0020816:66395-66414 | Msa1386440:intron | 30.0% | |
| !! | TTTTTCAAACTAGCTACACA+TGG | + | tig0020816:66435-66454 | None:intergenic | 30.0% |
| ! | TGTAGCTAGTTTGAAAAAGA+TGG | - | tig0020816:66437-66456 | Msa1386440:intron | 30.0% |
| GTACATGAAAAGATTGACAA+TGG | - | tig0020816:66827-66846 | Msa1386440:intron | 30.0% | |
| TTGCACATTAGGAGAATTTA+TGG | + | tig0020816:67035-67054 | None:intergenic | 30.0% | |
| ! | CTACTCATCATATGTTCTTT+TGG | + | tig0020816:67064-67083 | None:intergenic | 30.0% |
| CAAAAGAACATATGATGAGT+AGG | - | tig0020816:67062-67081 | Msa1386440:intron | 30.0% | |
| AAGTCTAATAAGCTAAGTAC+CGG | - | tig0020816:67125-67144 | Msa1386440:intron | 30.0% | |
| ACATCTTCAATTCAAAGTGT+TGG | + | tig0020816:67153-67172 | None:intergenic | 30.0% | |
| ATTCGGTACTTTAATCCAAA+AGG | - | tig0020816:68007-68026 | Msa1386440:five_prime_UTR | 30.0% | |
| TTCGGTACTTTAATCCAAAA+GGG | - | tig0020816:68008-68027 | Msa1386440:five_prime_UTR | 30.0% | |
| ! | GAAATGTATAATGGAGGAGA+AGG | + | tig0020816:57271-57290 | None:intergenic | 35.0% |
| GAGTTGGAAATGTATAATGG+AGG | + | tig0020816:57277-57296 | None:intergenic | 35.0% | |
| CCTGCACAAACAAAGAAAAT+TGG | + | tig0020816:57405-57424 | None:intergenic | 35.0% | |
| !! | CCAATTTTCTTTGTTTGTGC+AGG | - | tig0020816:57402-57421 | Msa1386440:three_prime_UTR | 35.0% |
| ! | TCAAAGAGATTTTGTTGGCA+TGG | - | tig0020816:57520-57539 | Msa1386440:three_prime_UTR | 35.0% |
| TATACATCAAGTTCTTAGGC+AGG | - | tig0020816:57579-57598 | Msa1386440:exon | 35.0% | |
| ! | TAAGTATCGCTGAATGAGTA+AGG | + | tig0020816:57746-57765 | None:intergenic | 35.0% |
| ! | AAGGGAATGTAGCCTTAAAT+TGG | - | tig0020816:57964-57983 | Msa1386440:intron | 35.0% |
| ! | AGGGAATGTAGCCTTAAATT+GGG | - | tig0020816:57965-57984 | Msa1386440:intron | 35.0% |
| TCATGCAATGCAATGATAGA+TGG | + | tig0020816:58009-58028 | None:intergenic | 35.0% | |
| TGCATGAAGCTAGAAATCAT+TGG | - | tig0020816:58022-58041 | Msa1386440:intron | 35.0% | |
| GTTGTTTGCATTTGCTCTTA+TGG | - | tig0020816:58164-58183 | Msa1386440:intron | 35.0% | |
| !! | ACAAAGTACTGAGTAGCAAA+CGG | - | tig0020816:58189-58208 | Msa1386440:intron | 35.0% |
| AATTTATGTCCTGTCACATG+TGG | - | tig0020816:58261-58280 | Msa1386440:CDS | 35.0% | |
| !! | TCTATCGGTTTCAACAAAAG+GGG | + | tig0020816:58696-58715 | None:intergenic | 35.0% |
| !! | CTCTATCGGTTTCAACAAAA+GGG | + | tig0020816:58697-58716 | None:intergenic | 35.0% |
| !! | TCTCTATCGGTTTCAACAAA+AGG | + | tig0020816:58698-58717 | None:intergenic | 35.0% |
| GACACAACAAATCATAGACT+TGG | + | tig0020816:58877-58896 | None:intergenic | 35.0% | |
| GAGTGACACACAATATTGAT+GGG | + | tig0020816:59277-59296 | None:intergenic | 35.0% | |
| AGAGTGACACACAATATTGA+TGG | + | tig0020816:59278-59297 | None:intergenic | 35.0% | |
| ! | ACTAGTGTCCTTTAAGTTTG+AGG | + | tig0020816:59415-59434 | None:intergenic | 35.0% |
| GAAAAGTGGTAAGCACTAAA+AGG | - | tig0020816:59502-59521 | Msa1386440:CDS | 35.0% | |
| AATGAAGTGTGTAATGAGTG+TGG | - | tig0020816:59878-59897 | Msa1386440:intron | 35.0% | |
| ATGAAGTGTGTAATGAGTGT+GGG | - | tig0020816:59879-59898 | Msa1386440:intron | 35.0% | |
| TCTCACCTTAATAATGCATC+GGG | - | tig0020816:59973-59992 | Msa1386440:intron | 35.0% | |
| TATGGCTAATGATATTTGGG+TGG | + | tig0020816:60100-60119 | None:intergenic | 35.0% | |
| ! | TTTTTCACTGGTCAATTACC+AGG | + | tig0020816:60290-60309 | None:intergenic | 35.0% |
| ! | ATGTGCTCAATGTTTTTCAC+TGG | + | tig0020816:60302-60321 | None:intergenic | 35.0% |
| AACACTTGTCATCAGATGAA+TGG | + | tig0020816:60416-60435 | None:intergenic | 35.0% | |
| CACTCACACAAATGGAAAAA+AGG | + | tig0020816:60534-60553 | None:intergenic | 35.0% | |
| TTTAGACACACTCACACAAA+TGG | + | tig0020816:60542-60561 | None:intergenic | 35.0% | |
| ! | TTCTTTTCATCCAGTGTTTC+AGG | - | tig0020816:60609-60628 | Msa1386440:CDS | 35.0% |
| GAGTTAATATCCTGAAACAC+TGG | + | tig0020816:60622-60641 | None:intergenic | 35.0% | |
| AGACTATTACATAACATGCG+GGG | + | tig0020816:60934-60953 | None:intergenic | 35.0% | |
| ! | ATAGTCTTAGCTTCAATTCG+TGG | - | tig0020816:60947-60966 | Msa1386440:intron | 35.0% |
| GTCAATTAGACGTGAAGATA+AGG | - | tig0020816:60971-60990 | Msa1386440:intron | 35.0% | |
| TTAGACGTGAAGATAAGGAA+AGG | - | tig0020816:60976-60995 | Msa1386440:intron | 35.0% | |
| ATCTCTTGGAAGTTTAAGGA+GGG | + | tig0020816:61118-61137 | None:intergenic | 35.0% | |
| AATCTCTTGGAAGTTTAAGG+AGG | + | tig0020816:61119-61138 | None:intergenic | 35.0% | |
| GTTCACTATGTTCTTATGGA+AGG | + | tig0020816:61416-61435 | None:intergenic | 35.0% | |
| TCTCGTTCACTATGTTCTTA+TGG | + | tig0020816:61420-61439 | None:intergenic | 35.0% | |
| TGACTTCGCAGTTAATATTG+AGG | - | tig0020816:61614-61633 | Msa1386440:intron | 35.0% | |
| GACTTCGCAGTTAATATTGA+GGG | - | tig0020816:61615-61634 | Msa1386440:intron | 35.0% | |
| CGAATTCAGATCATGACTTT+AGG | + | tig0020816:62164-62183 | None:intergenic | 35.0% | |
| ! | GTGTCTTATTCAACTTGTGT+TGG | + | tig0020816:62250-62269 | None:intergenic | 35.0% |
| TAGCATCTTACTGTACATGT+TGG | - | tig0020816:62305-62324 | Msa1386440:intron | 35.0% | |
| !!! | TTTTTTTTTGTAAGAGGGGC+AGG | + | tig0020816:62344-62363 | None:intergenic | 35.0% |
| ! | TGCACACCTTTTCAAATTTC+TGG | - | tig0020816:62433-62452 | Msa1386440:intron | 35.0% |
| !! | AAATAGAGAACAAGGGCATT+TGG | - | tig0020816:63185-63204 | Msa1386440:intron | 35.0% |
| ! | ACCTTACGTCACTTTCTATT+GGG | - | tig0020816:63304-63323 | Msa1386440:intron | 35.0% |
| GTTGAAGATGACATAGCTTA+AGG | - | tig0020816:63362-63381 | Msa1386440:intron | 35.0% | |
| !! | TATACAGTTGTTTTCACCGT+TGG | - | tig0020816:63818-63837 | Msa1386440:intron | 35.0% |
| CTATCAATCTCCTTTGTACA+TGG | - | tig0020816:64163-64182 | Msa1386440:intron | 35.0% | |
| ACAAGTATCACCATGTACAA+AGG | + | tig0020816:64176-64195 | None:intergenic | 35.0% | |
| GTGATACTTGTGTATCGTTT+AGG | - | tig0020816:64185-64204 | Msa1386440:intron | 35.0% | |
| AGGTTCTATGTGTTCATCTA+TGG | - | tig0020816:64205-64224 | Msa1386440:intron | 35.0% | |
| ACACTCATACATAACACACA+CGG | - | tig0020816:64250-64269 | Msa1386440:intron | 35.0% | |
| TGTATGTATGCTGTTGTAAC+AGG | + | tig0020816:64318-64337 | None:intergenic | 35.0% | |
| TGATGTTTCAACACACTTCT+TGG | + | tig0020816:64471-64490 | None:intergenic | 35.0% | |
| !!! | ACAATTTCTGGTGGTGTTTT+TGG | + | tig0020816:64597-64616 | None:intergenic | 35.0% |
| ACTTTCAACCTCTTCTTCAA+TGG | + | tig0020816:64733-64752 | None:intergenic | 35.0% | |
| ! | GAAGCTAAGATATCAGCTTT+TGG | - | tig0020816:65011-65030 | Msa1386440:intron | 35.0% |
| !! | TTGATTTGCTTCAAAGTGCA+TGG | - | tig0020816:65081-65100 | Msa1386440:intron | 35.0% |
| AAAATTGGCCAACACTCAAA+AGG | - | tig0020816:65605-65624 | Msa1386440:intron | 35.0% | |
| CTTTGTGTCCTGATTCTTTA+AGG | + | tig0020816:65658-65677 | None:intergenic | 35.0% | |
| GACACAAAGAAAGACTTGAA+AGG | - | tig0020816:65669-65688 | Msa1386440:intron | 35.0% | |
| AGGAGAAATTCAAAACCGAT+CGG | - | tig0020816:65743-65762 | Msa1386440:intron | 35.0% | |
| TGGCCATTATTTCCAGATTA+GGG | - | tig0020816:65855-65874 | Msa1386440:intron | 35.0% | |
| ACAAAAGGGGAGTTCATTAA+TGG | - | tig0020816:65889-65908 | Msa1386440:intron | 35.0% | |
| !! | AAGTTTGTTGATTGGCTTGA+TGG | - | tig0020816:65964-65983 | Msa1386440:intron | 35.0% |
| CTGCCAAAGTTATTTATTGG+TGG | - | tig0020816:66011-66030 | Msa1386440:intron | 35.0% | |
| CTTAGTAGCTTCTTATGATC+CGG | - | tig0020816:66261-66280 | Msa1386440:intron | 35.0% | |
| !! | CTGTCTTGAAGCATTTTAAG+TGG | - | tig0020816:66307-66326 | Msa1386440:intron | 35.0% |
| ! | TACTGATATGGCAGATTTTC+AGG | - | tig0020816:66511-66530 | Msa1386440:intron | 35.0% |
| ATTCTTTCCATCGTTGTGAT+AGG | - | tig0020816:66546-66565 | Msa1386440:intron | 35.0% | |
| TGATTCAGGAATATCAAGCA+AGG | - | tig0020816:66658-66677 | Msa1386440:intron | 35.0% | |
| AATGACTCTAATACCCCTAT+TGG | - | tig0020816:66718-66737 | Msa1386440:intron | 35.0% | |
| AAGCATTTCAAAGGCCAATA+GGG | + | tig0020816:66735-66754 | None:intergenic | 35.0% | |
| TAAGCATTTCAAAGGCCAAT+AGG | + | tig0020816:66736-66755 | None:intergenic | 35.0% | |
| ACCATTTATGCAGATAAAGC+AGG | - | tig0020816:66782-66801 | Msa1386440:intron | 35.0% | |
| GAGAATCTTGACTAGATTCT+CGG | + | tig0020816:66878-66897 | None:intergenic | 35.0% | |
| TCAAGATTCTCTTCTACTAC+AGG | - | tig0020816:66887-66906 | Msa1386440:intron | 35.0% | |
| CAAGATTCTCTTCTACTACA+GGG | - | tig0020816:66888-66907 | Msa1386440:intron | 35.0% | |
| ! | CTCATCATATGTTCTTTTGG+TGG | + | tig0020816:67061-67080 | None:intergenic | 35.0% |
| TGAGTAGGTTTACTACAATC+AGG | - | tig0020816:67077-67096 | Msa1386440:intron | 35.0% | |
| CTTTGAATTGAAGATGTGTG+TGG | - | tig0020816:67156-67175 | Msa1386440:intron | 35.0% | |
| !!! | ATTGTTTTGTAGTTTGCTGG+AGG | - | tig0020816:67475-67494 | Msa1386440:intron | 35.0% |
| AGAAAGTAAACTCCAATCCA+TGG | - | tig0020816:67737-67756 | Msa1386440:intron | 35.0% | |
| TTTCATAGCAGACTTATCCA+TGG | + | tig0020816:67757-67776 | None:intergenic | 35.0% | |
| CAATCTAGGAATAGGATCTT+CGG | - | tig0020816:67795-67814 | Msa1386440:five_prime_UTR | 35.0% | |
| TTGTAGGGGGTTGAGTATAT+AGG | + | tig0020816:57230-57249 | None:intergenic | 40.0% | |
| TGGGGAGAAAAAGAGTTGTA+GGG | + | tig0020816:57245-57264 | None:intergenic | 40.0% | |
| ATGGGGAGAAAAAGAGTTGT+AGG | + | tig0020816:57246-57265 | None:intergenic | 40.0% | |
| ! | ATAATGGAGGAGAAGGCTAT+GGG | + | tig0020816:57264-57283 | None:intergenic | 40.0% |
| ! | TATAATGGAGGAGAAGGCTA+TGG | + | tig0020816:57265-57284 | None:intergenic | 40.0% |
| ! | AATTGGTACCTTGGCTTTCA+TGG | + | tig0020816:57388-57407 | None:intergenic | 40.0% |
| ! | ATGGCTTGGAAAGGATTTCT+TGG | - | tig0020816:57539-57558 | Msa1386440:three_prime_UTR | 40.0% |
| !!! | AGCTGGTACGTTAGTTTTTC+AGG | - | tig0020816:57712-57731 | Msa1386440:intron | 40.0% |
| TCAGCGATACTTAACTTACC+AGG | - | tig0020816:57753-57772 | Msa1386440:intron | 40.0% | |
| GTTGTCTCAAGTGAGTAGTT+CGG | + | tig0020816:57783-57802 | None:intergenic | 40.0% | |
| GAACTACTCACTTGAGACAA+CGG | - | tig0020816:57782-57801 | Msa1386440:intron | 40.0% | |
| AACTACTCACTTGAGACAAC+GGG | - | tig0020816:57783-57802 | Msa1386440:intron | 40.0% | |
| TGCTTCTGCACTTTCTTTCA+CGG | - | tig0020816:58287-58306 | Msa1386440:CDS | 40.0% | |
| AACACCAACCAATTCACCTT+TGG | - | tig0020816:58352-58371 | Msa1386440:CDS | 40.0% | |
| TATGCCAAAGGTGAATTGGT+TGG | + | tig0020816:58359-58378 | None:intergenic | 40.0% | |
| CGTATATGCCAAAGGTGAAT+TGG | + | tig0020816:58363-58382 | None:intergenic | 40.0% | |
| AGTTATGGCCCCTATACATT+TGG | - | tig0020816:58536-58555 | Msa1386440:CDS | 40.0% | |
| GACACACAATATTGATGGGA+GGG | + | tig0020816:59273-59292 | None:intergenic | 40.0% | |
| TGACACACAATATTGATGGG+AGG | + | tig0020816:59274-59293 | None:intergenic | 40.0% | |
| ! | TCGGTTAATTTTCATTCCGG+TGG | + | tig0020816:59326-59345 | None:intergenic | 40.0% |
| ! | TGGTAAGCACTAAAAGGTGT+TGG | - | tig0020816:59508-59527 | Msa1386440:CDS | 40.0% |
| !! | GGTAAGCACTAAAAGGTGTT+GGG | - | tig0020816:59509-59528 | Msa1386440:CDS | 40.0% |
| !! | GTAAGCACTAAAAGGTGTTG+GGG | - | tig0020816:59510-59529 | Msa1386440:CDS | 40.0% |
| AAAGTAGCCACGCAAATCTA+AGG | + | tig0020816:59692-59711 | None:intergenic | 40.0% | |
| !!! | AGATTTGCGTGGCTACTTTT+TGG | - | tig0020816:59693-59712 | Msa1386440:CDS | 40.0% |
| !! | GGAGAAAGGTGTCCAAATAT+CGG | - | tig0020816:59900-59919 | Msa1386440:intron | 40.0% |
| AGGTGTCCAAATATCGGATT+TGG | - | tig0020816:59906-59925 | Msa1386440:intron | 40.0% | |
| GAGGATCCAAATCCGATATT+TGG | + | tig0020816:59915-59934 | None:intergenic | 40.0% | |
| GTGACTAAGCAAGTTGTTTG+TGG | - | tig0020816:60579-60598 | Msa1386440:CDS | 40.0% | |
| GACTATTACATAACATGCGG+GGG | + | tig0020816:60933-60952 | None:intergenic | 40.0% | |
| GATAAGGAAAGGAATGCGAT+AGG | - | tig0020816:60987-61006 | Msa1386440:intron | 40.0% | |
| TAACCAAACCAATCTACCCT+TGG | - | tig0020816:61295-61314 | Msa1386440:intron | 40.0% | |
| ACATCACACATGTCTTCCAA+GGG | + | tig0020816:61314-61333 | None:intergenic | 40.0% | |
| AACATCACACATGTCTTCCA+AGG | + | tig0020816:61315-61334 | None:intergenic | 40.0% | |
| TGAGCAACTAGAAGTGAGAA+AGG | - | tig0020816:61471-61490 | Msa1386440:intron | 40.0% | |
| GACTAAAGTGGTTGTGTTGT+GGG | + | tig0020816:61689-61708 | None:intergenic | 40.0% | |
| TGACTAAAGTGGTTGTGTTG+TGG | + | tig0020816:61690-61709 | None:intergenic | 40.0% | |
| AAGTCATGATCTGAATTCGG+TGG | - | tig0020816:62165-62184 | Msa1386440:intron | 40.0% | |
| AGAGACACATTGATAGACCT+AGG | - | tig0020816:62206-62225 | Msa1386440:intron | 40.0% | |
| GGCATGTTCTAACTGTGATT+TGG | - | tig0020816:62454-62473 | Msa1386440:intron | 40.0% | |
| !! | TTCATGTTCGCCGTTTTAAG+TGG | + | tig0020816:62526-62545 | None:intergenic | 40.0% |
| !! | ACTTTTTCTGACGAACATGC+AGG | + | tig0020816:63138-63157 | None:intergenic | 40.0% |
| !!! | ATTTTTTTGGTGAGAGGGTC+AGG | - | tig0020816:63241-63260 | Msa1386440:intron | 40.0% |
| !!! | TTTTTTTGGTGAGAGGGTCA+GGG | - | tig0020816:63242-63261 | Msa1386440:intron | 40.0% |
| ! | CACCTTACGTCACTTTCTAT+TGG | - | tig0020816:63303-63322 | Msa1386440:intron | 40.0% |
| ! | CCTTACGTCACTTTCTATTG+GGG | - | tig0020816:63305-63324 | Msa1386440:intron | 40.0% |
| TGTCAATTAAATTGGGACGG+AGG | + | tig0020816:63501-63520 | None:intergenic | 40.0% | |
| TAAAATGGGTCAGTCATTCC+TGG | - | tig0020816:63692-63711 | Msa1386440:intron | 40.0% | |
| GGCTTATCAGATGAAGTCTA+TGG | - | tig0020816:63766-63785 | Msa1386440:intron | 40.0% | |
| TGCCGCAAGTCTAAAAAAGT+TGG | - | tig0020816:63966-63985 | Msa1386440:intron | 40.0% | |
| CACTCATACATAACACACAC+GGG | - | tig0020816:64251-64270 | Msa1386440:intron | 40.0% | |
| !! | TGTTGGTGTTTTCTGCTTCA+TGG | + | tig0020816:64430-64449 | None:intergenic | 40.0% |
| GTGGTTGTAGTTGTTGATGT+TGG | + | tig0020816:64447-64466 | None:intergenic | 40.0% | |
| TTTCAACACACTTCTTGGTG+TGG | + | tig0020816:64466-64485 | None:intergenic | 40.0% | |
| !! | AAACGTGTTGTTGCTGTTTG+TGG | + | tig0020816:64540-64559 | None:intergenic | 40.0% |
| GAATTGTTCTTCATGTCTGG+AGG | + | tig0020816:64669-64688 | None:intergenic | 40.0% | |
| AGAGGTTGAAAGTTCTCACA+AGG | - | tig0020816:64740-64759 | Msa1386440:intron | 40.0% | |
| GAGGTTGAAAGTTCTCACAA+GGG | - | tig0020816:64741-64760 | Msa1386440:intron | 40.0% | |
| TCTTTCTTCTCCTTCACATC+AGG | + | tig0020816:64840-64859 | None:intergenic | 40.0% | |
| GATCAAAAGTTTGCAGTCTG+AGG | - | tig0020816:64893-64912 | Msa1386440:intron | 40.0% | |
| ! | AAGTTTGCAGTCTGAGGTTA+AGG | - | tig0020816:64899-64918 | Msa1386440:intron | 40.0% |
| TGATATCTTAGCTTCAGCAG+AGG | + | tig0020816:65006-65025 | None:intergenic | 40.0% | |
| TGGCACTAGTAGTACTAGAA+AGG | - | tig0020816:65031-65050 | Msa1386440:intron | 40.0% | |
| TGAATGAAGAAGGAGCCAAT+TGG | - | tig0020816:65327-65346 | Msa1386440:intron | 40.0% | |
| TGAAACAGTTGGACAATTGC+AGG | + | tig0020816:65633-65652 | None:intergenic | 40.0% | |
| TTGTGTGCACTGTTAGCTAT+CGG | + | tig0020816:65714-65733 | None:intergenic | 40.0% | |
| AGTGCACACAATAGCATTGT+AGG | - | tig0020816:65723-65742 | Msa1386440:intron | 40.0% | |
| TGAGTGATGACTGATATGAC+TGG | - | tig0020816:65835-65854 | Msa1386440:intron | 40.0% | |
| CTGGCCATTATTTCCAGATT+AGG | - | tig0020816:65854-65873 | Msa1386440:intron | 40.0% | |
| CCTCCCTAATCTGGAAATAA+TGG | + | tig0020816:65861-65880 | None:intergenic | 40.0% | |
| CCATTATTTCCAGATTAGGG+AGG | - | tig0020816:65858-65877 | Msa1386440:intron | 40.0% | |
| TTTGAATGTCCTCCCTAATC+TGG | + | tig0020816:65870-65889 | None:intergenic | 40.0% | |
| AGGGAGGACATTCAAACAAA+AGG | - | tig0020816:65874-65893 | Msa1386440:intron | 40.0% | |
| GGGAGGACATTCAAACAAAA+GGG | - | tig0020816:65875-65894 | Msa1386440:intron | 40.0% | |
| GGAGGACATTCAAACAAAAG+GGG | - | tig0020816:65876-65895 | Msa1386440:intron | 40.0% | |
| !! | ACGTCCTCAAGTTTGTTGAT+TGG | - | tig0020816:65956-65975 | Msa1386440:intron | 40.0% |
| CAAGCCAATCAACAAACTTG+AGG | + | tig0020816:65963-65982 | None:intergenic | 40.0% | |
| ! | TGATGGTGAACTATCCACTT+TGG | - | tig0020816:65981-66000 | Msa1386440:intron | 40.0% |
| TTGGCAGAAACTTACCAAAG+TGG | + | tig0020816:65998-66017 | None:intergenic | 40.0% | |
| GGCCCACCAATAAATAACTT+TGG | + | tig0020816:66017-66036 | None:intergenic | 40.0% | |
| ! | GTTTGGCCTAACTTCTTTTG+AGG | - | tig0020816:66165-66184 | Msa1386440:intron | 40.0% |
| TAGCTACACATGGAATGTCA+GGG | + | tig0020816:66425-66444 | None:intergenic | 40.0% | |
| !! | TGATATGGCAGATTTTCAGG+TGG | - | tig0020816:66514-66533 | Msa1386440:intron | 40.0% |
| AGCATTTCAAAGGCCAATAG+GGG | + | tig0020816:66734-66753 | None:intergenic | 40.0% | |
| GCCTGCTTTATCTGCATAAA+TGG | + | tig0020816:66786-66805 | None:intergenic | 40.0% | |
| TTCTCGGTCTGAATTTCGAA+TGG | + | tig0020816:66862-66881 | None:intergenic | 40.0% | |
| TTGAAGATGTGTGTGGTGTA+CGG | - | tig0020816:67163-67182 | Msa1386440:intron | 40.0% | |
| TTGTGTGTCAATGTCATGTC+CGG | - | tig0020816:67255-67274 | Msa1386440:intron | 40.0% | |
| ACAATGTTAGAACAGCAACC+TGG | + | tig0020816:67448-67467 | None:intergenic | 40.0% | |
| !! | TTTGTAGTTTGCTGGAGGTT+TGG | - | tig0020816:67480-67499 | Msa1386440:intron | 40.0% |
| TCACAAAATCCTCTGAGTGA+GGG | + | tig0020816:67717-67736 | None:intergenic | 40.0% | |
| TTCACAAAATCCTCTGAGTG+AGG | + | tig0020816:67718-67737 | None:intergenic | 40.0% | |
| TAGCAGACTTATCCATGGAT+TGG | + | tig0020816:67752-67771 | None:intergenic | 40.0% | |
| CTATTCCTAGATTGTGAGAC+AGG | + | tig0020816:67789-67808 | None:intergenic | 40.0% | |
| CTGTCTCACAATCTAGGAAT+AGG | - | tig0020816:67787-67806 | Msa1386440:five_prime_UTR | 40.0% | |
| GGGAGAAAAAGAGTTGTAGG+GGG | + | tig0020816:57243-57262 | None:intergenic | 45.0% | |
| GGGGAGAAAAAGAGTTGTAG+GGG | + | tig0020816:57244-57263 | None:intergenic | 45.0% | |
| TAATGGAGGAGAAGGCTATG+GGG | + | tig0020816:57263-57282 | None:intergenic | 45.0% | |
| GGACTAATCCATGAAAGCCA+AGG | - | tig0020816:57377-57396 | Msa1386440:three_prime_UTR | 45.0% | |
| ! | GAGATTTTGTTGGCATGGCT+TGG | - | tig0020816:57525-57544 | Msa1386440:three_prime_UTR | 45.0% |
| ! | TTTGTTGGCATGGCTTGGAA+AGG | - | tig0020816:57530-57549 | Msa1386440:three_prime_UTR | 45.0% |
| TCTCAAGTGAGTAGTTCGGT+TGG | + | tig0020816:57779-57798 | None:intergenic | 45.0% | |
| !! | AAGTACTGAGTAGCAAACGG+TGG | - | tig0020816:58192-58211 | Msa1386440:intron | 45.0% |
| GAAGCATATCCACATGTGAC+AGG | + | tig0020816:58273-58292 | None:intergenic | 45.0% | |
| !! | TAAAAGGTGTTGGGGCCTAT+CGG | - | tig0020816:59518-59537 | Msa1386440:CDS | 45.0% |
| TCCTATGCCTTAGATTTGCG+TGG | - | tig0020816:59682-59701 | Msa1386440:CDS | 45.0% | |
| !!! | TTGCGTGGCTACTTTTTGGA+TGG | - | tig0020816:59697-59716 | Msa1386440:CDS | 45.0% |
| GTGTAATGAGTGTGGGAGAA+AGG | - | tig0020816:59886-59905 | Msa1386440:intron | 45.0% | |
| ! | CTTCCAAGGGTAGATTGGTT+TGG | + | tig0020816:61301-61320 | None:intergenic | 45.0% |
| CATGTCTTCCAAGGGTAGAT+TGG | + | tig0020816:61306-61325 | None:intergenic | 45.0% | |
| ! | CCTTTTCTCGGTTCAACACA+AGG | + | tig0020816:61958-61977 | None:intergenic | 45.0% |
| CCTTGTGTTGAACCGAGAAA+AGG | - | tig0020816:61955-61974 | Msa1386440:intron | 45.0% | |
| ! | AACATGCTCGCCATTTCTAG+TGG | + | tig0020816:62583-62602 | None:intergenic | 45.0% |
| ATGGATGCTCGCCATTTGAT+TGG | - | tig0020816:63086-63105 | Msa1386440:intron | 45.0% | |
| CCTGTGTTCTGCCAATCAAA+TGG | + | tig0020816:63100-63119 | None:intergenic | 45.0% | |
| CCATTTGATTGGCAGAACAC+AGG | - | tig0020816:63097-63116 | Msa1386440:intron | 45.0% | |
| ! | GAACATGCAGGCTTTTTGCA+GGG | + | tig0020816:63126-63145 | None:intergenic | 45.0% |
| GACACGAGGATCAACATGTA+CGG | + | tig0020816:63279-63298 | None:intergenic | 45.0% | |
| CCCCAATAGAAAGTGACGTA+AGG | + | tig0020816:63308-63327 | None:intergenic | 45.0% | |
| ! | TACGTCACTTTCTATTGGGG+TGG | - | tig0020816:63308-63327 | Msa1386440:intron | 45.0% |
| !! | TGGCTGGCTTTAAATCGTCA+AGG | - | tig0020816:63328-63347 | Msa1386440:intron | 45.0% |
| TCTCACAAGGGTAGTAGAGA+AGG | - | tig0020816:64753-64772 | Msa1386440:intron | 45.0% | |
| TAGAGAAGGTGAAGTGGCTA+AGG | - | tig0020816:64767-64786 | Msa1386440:intron | 45.0% | |
| GAAGGAGAAGAAAGAGTTGC+TGG | - | tig0020816:64845-64864 | Msa1386440:intron | 45.0% | |
| ! | AATTTTGCCATAGGCCGAGA+GGG | + | tig0020816:65591-65610 | None:intergenic | 45.0% |
| !! | GTGTTGGCCAATTTTGCCAT+AGG | + | tig0020816:65600-65619 | None:intergenic | 45.0% |
| CTGCTAAAAGATGAGCCGAT+CGG | + | tig0020816:65761-65780 | None:intergenic | 45.0% | |
| GACGTCTTCAATGTCCACAT+AGG | + | tig0020816:65941-65960 | None:intergenic | 45.0% | |
| CTTATGATCCGGTATTGTGC+AGG | - | tig0020816:66272-66291 | Msa1386440:intron | 45.0% | |
| ATCGCATCAGCTTTCTTCTC+AGG | + | tig0020816:66333-66352 | None:intergenic | 45.0% | |
| CTAGCTACACATGGAATGTC+AGG | + | tig0020816:66426-66445 | None:intergenic | 45.0% | |
| ATCGTTGTGATAGGTCTGAG+CGG | - | tig0020816:66555-66574 | Msa1386440:intron | 45.0% | |
| TGTACAACATTCCAACTGCG+TGG | - | tig0020816:66630-66649 | Msa1386440:intron | 45.0% | |
| ! | TTTTGCATACAGAGCCCATC+AGG | - | tig0020816:66917-66936 | Msa1386440:intron | 45.0% |
| ! | TTTGGTGGCACTTGCACATT+AGG | + | tig0020816:67046-67065 | None:intergenic | 45.0% |
| ATTGACATGGATACAGACGC+CGG | + | tig0020816:67277-67296 | None:intergenic | 45.0% | |
| GAGATAAGACAACGTGTACC+AGG | - | tig0020816:67529-67548 | Msa1386440:intron | 45.0% | |
| AGTATGAAACCCTCACTCAG+AGG | - | tig0020816:67705-67724 | Msa1386440:intron | 45.0% | |
| TACAGCCTGTCTCACAATCT+AGG | - | tig0020816:67781-67800 | Msa1386440:five_prime_UTR | 45.0% | |
| !!! | TTAATTAAATAATTTTTCTT+TGG | - | tig0020816:57653-57672 | Msa1386440:CDS | 5.0% |
| !!! | TAATTAAGTTAATTTTTTTA+AGG | + | tig0020816:58597-58616 | None:intergenic | 5.0% |
| !!! | TTTATCAATTTTTTTAATAT+CGG | + | tig0020816:59345-59364 | None:intergenic | 5.0% |
| !!! | ACATTTTATATTATAAAAAT+AGG | + | tig0020816:59447-59466 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTCATTTTTTTT+CGG | - | tig0020816:62607-62626 | Msa1386440:intron | 5.0% |
| !! | ACAAAAATAATAATTTAAAA+TGG | - | tig0020816:63067-63086 | Msa1386440:intron | 5.0% |
| !! | TAAGAAAAATATATAAATAA+AGG | - | tig0020816:63543-63562 | Msa1386440:intron | 5.0% |
| !! | AAGAAAAATATATAAATAAA+GGG | - | tig0020816:63544-63563 | Msa1386440:intron | 5.0% |
| ! | GCCACGCAAATCTAAGGCAT+AGG | + | tig0020816:59686-59705 | None:intergenic | 50.0% |
| ! | ATCTGAATTCGGTGGTCGAG+TGG | - | tig0020816:62173-62192 | Msa1386440:intron | 50.0% |
| ! | CGAACATGCAGGCTTTTTGC+AGG | + | tig0020816:63127-63146 | None:intergenic | 50.0% |
| ACGTAAGGTGAACAGACACG+AGG | + | tig0020816:63293-63312 | None:intergenic | 50.0% | |
| TCACTTTCTATTGGGGTGGC+TGG | - | tig0020816:63312-63331 | Msa1386440:intron | 50.0% | |
| ATGGGTCAGTCATTCCTGGA+CGG | - | tig0020816:63696-63715 | Msa1386440:intron | 50.0% | |
| GGGTAGTAGAGAAGGTGAAG+TGG | - | tig0020816:64761-64780 | Msa1386440:intron | 50.0% | |
| ! | TTGTTGTTGTTGCTCCTCCG+CGG | - | tig0020816:64790-64809 | Msa1386440:intron | 50.0% |
| GGAGGATGATCCTGATGTGA+AGG | - | tig0020816:64827-64846 | Msa1386440:intron | 50.0% | |
| AGAGTTGCTGGAGAAGCTTG+AGG | - | tig0020816:64857-64876 | Msa1386440:intron | 50.0% | |
| ! | GTCTGAGGTTAAGGCCTTGA+AGG | - | tig0020816:64908-64927 | Msa1386440:intron | 50.0% |
| TCTTAGCTTCAGCAGAGGCA+AGG | + | tig0020816:65001-65020 | None:intergenic | 50.0% | |
| GGACTTTGGCGTTCTCCAAT+TGG | + | tig0020816:65345-65364 | None:intergenic | 50.0% | |
| AACTCCAACACCGAGTCATG+CGG | - | tig0020816:65479-65498 | Msa1386440:intron | 50.0% | |
| ! | CAATTTTGCCATAGGCCGAG+AGG | + | tig0020816:65592-65611 | None:intergenic | 50.0% |
| CTCTCGGCCTATGGCAAAAT+TGG | - | tig0020816:65590-65609 | Msa1386440:intron | 50.0% | |
| !! | TGCAGGAGCCTTTTGAGTGT+TGG | + | tig0020816:65616-65635 | None:intergenic | 50.0% |
| CTCATCAGCCTGCACAATAC+CGG | + | tig0020816:66283-66302 | None:intergenic | 50.0% | |
| !!! | ATGGCAGATTTTCAGGTGGC+AGG | - | tig0020816:66518-66537 | Msa1386440:intron | 50.0% |
| !!! | TGGCAGATTTTCAGGTGGCA+GGG | - | tig0020816:66519-66538 | Msa1386440:intron | 50.0% |
| GCTCAGACCTATCACAACGA+TGG | + | tig0020816:66556-66575 | None:intergenic | 50.0% | |
| GAATCAAGCATCCACGCAGT+TGG | + | tig0020816:66644-66663 | None:intergenic | 50.0% | |
| ACTGCGTGGATGCTTGATTC+AGG | - | tig0020816:66644-66663 | Msa1386440:intron | 50.0% | |
| ! | GTTTGCTGGAGGTTTGGACT+CGG | - | tig0020816:67486-67505 | Msa1386440:intron | 50.0% |
| AAAGTTCTCGAGACCCTGCT+AGG | + | tig0020816:67558-67577 | None:intergenic | 50.0% | |
| ! | AGTGAGTAGTTCGGTTGGCC+TGG | + | tig0020816:57774-57793 | None:intergenic | 55.0% |
| GTCAGTCATTCCTGGACGGA+GGG | - | tig0020816:63700-63719 | Msa1386440:intron | 55.0% | |
| ATAACACACTCCCTCCGTCC+AGG | + | tig0020816:63713-63732 | None:intergenic | 55.0% | |
| TTGGAGTTGGAGCTGGAGCT+GGG | + | tig0020816:65467-65486 | None:intergenic | 55.0% | |
| !! | GCATGACTCGGTGTTGGAGT+TGG | + | tig0020816:65480-65499 | None:intergenic | 55.0% |
| TCACGAATGGCCGCATGACT+CGG | + | tig0020816:65492-65511 | None:intergenic | 55.0% | |
| ATAGGCCGAGAGGGAATTGG+TGG | + | tig0020816:65582-65601 | None:intergenic | 55.0% | |
| ACCAATTCCCTCTCGGCCTA+TGG | - | tig0020816:65581-65600 | Msa1386440:intron | 55.0% | |
| GGTTGTTGACGCGTCCTATG+TGG | - | tig0020816:65924-65943 | Msa1386440:intron | 55.0% | |
| GAAAGCTGATGCGATGCGTG+AGG | - | tig0020816:66338-66357 | Msa1386440:intron | 55.0% | |
| !!! | GGCAGATTTTCAGGTGGCAG+GGG | - | tig0020816:66520-66539 | Msa1386440:intron | 55.0% |
| GTGTACCAGGACACCTAGCA+GGG | - | tig0020816:67542-67561 | Msa1386440:intron | 55.0% | |
| GGTCAGTCATTCCTGGACGG+AGG | - | tig0020816:63699-63718 | Msa1386440:intron | 60.0% | |
| TCCTCAATCCTCCTTCGCCG+CGG | + | tig0020816:64810-64829 | None:intergenic | 60.0% | |
| GTTGGAGTTGGAGCTGGAGC+TGG | + | tig0020816:65468-65487 | None:intergenic | 60.0% | |
| !! | CTCGGTGTTGGAGTTGGAGC+TGG | + | tig0020816:65474-65493 | None:intergenic | 60.0% |
| !! | ATGGCCGCATGACTCGGTGT+TGG | + | tig0020816:65486-65505 | None:intergenic | 60.0% |
| !! | CGAGAGGGAATTGGTGGTGG+CGG | + | tig0020816:65576-65595 | None:intergenic | 60.0% |
| CGCCACCACCAATTCCCTCT+CGG | - | tig0020816:65574-65593 | Msa1386440:intron | 60.0% | |
| GCCATAGGCCGAGAGGGAAT+TGG | + | tig0020816:65585-65604 | None:intergenic | 60.0% | |
| CGTGTACCAGGACACCTAGC+AGG | - | tig0020816:67541-67560 | Msa1386440:intron | 60.0% | |
| TTGTTGCTCCTCCGCGGCGA+AGG | - | tig0020816:64796-64815 | Msa1386440:intron | 65.0% | |
| TCAATCCTCCTTCGCCGCGG+AGG | + | tig0020816:64807-64826 | None:intergenic | 65.0% | |
| TCCGCGGCGAAGGAGGATTG+AGG | - | tig0020816:64806-64825 | Msa1386440:intron | 65.0% | |
| GCGGCGAAGGAGGATTGAGG+AGG | - | tig0020816:64809-64828 | Msa1386440:intron | 65.0% | |
| GGTGGCATGAGGCAGTGGCT+GGG | + | tig0020816:65543-65562 | None:intergenic | 65.0% | |
| AGGTGGCATGAGGCAGTGGC+TGG | + | tig0020816:65544-65563 | None:intergenic | 65.0% | |
| GTGGAGGTGGCATGAGGCAG+TGG | + | tig0020816:65548-65567 | None:intergenic | 65.0% | |
| !! | GAGGTGGTGGAGGTGGCATG+AGG | + | tig0020816:65554-65573 | None:intergenic | 65.0% |
| !! | ATTGGTGGTGGCGGAGGTGG+TGG | + | tig0020816:65567-65586 | None:intergenic | 65.0% |
| !! | GGAATTGGTGGTGGCGGAGG+TGG | + | tig0020816:65570-65589 | None:intergenic | 65.0% |
| !! | GAGGGAATTGGTGGTGGCGG+AGG | + | tig0020816:65573-65592 | None:intergenic | 65.0% |
| GGCCGAGAGGGAATTGGTGG+TGG | + | tig0020816:65579-65598 | None:intergenic | 65.0% | |
| CGAGACCCTGCTAGGTGTCC+TGG | + | tig0020816:67550-67569 | None:intergenic | 65.0% | |
| TTGCTCCTCCGCGGCGAAGG+AGG | - | tig0020816:64799-64818 | Msa1386440:intron | 70.0% | |
| GGCATGAGGCAGTGGCTGGG+TGG | + | tig0020816:65540-65559 | None:intergenic | 70.0% | |
| !! | GGTGGCGGAGGTGGTGGAGG+TGG | + | tig0020816:65561-65580 | None:intergenic | 75.0% |
| !! | GGTGGTGGCGGAGGTGGTGG+AGG | + | tig0020816:65564-65583 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020816 | gene | 57150 | 68038 | 57150 | ID=Msa1386440;Name=Msa1386440 |
| tig0020816 | mRNA | 57150 | 68038 | 57150 | ID=Msa1386440-mRNA-1;Parent=Msa1386440;Name=Msa1386440-mRNA-1;_AED=0.19;_eAED=0.19;_QI=387|1|1|1|0.87|0.77|9|438|583 |
| tig0020816 | exon | 57150 | 57701 | 57150 | ID=Msa1386440-mRNA-1:exon:10188;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 58250 | 58393 | 58250 | ID=Msa1386440-mRNA-1:exon:10187;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 58509 | 58620 | 58509 | ID=Msa1386440-mRNA-1:exon:10186;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 58713 | 58894 | 58713 | ID=Msa1386440-mRNA-1:exon:10185;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 59186 | 59317 | 59186 | ID=Msa1386440-mRNA-1:exon:10184;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 59409 | 59852 | 59409 | ID=Msa1386440-mRNA-1:exon:10183;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 60136 | 60782 | 60136 | ID=Msa1386440-mRNA-1:exon:10182;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 67588 | 67677 | 67588 | ID=Msa1386440-mRNA-1:exon:10181;Parent=Msa1386440-mRNA-1 |
| tig0020816 | exon | 67765 | 68038 | 67765 | ID=Msa1386440-mRNA-1:exon:10180;Parent=Msa1386440-mRNA-1 |
| tig0020816 | five_prime_UTR | 67765 | 68038 | 67765 | ID=Msa1386440-mRNA-1:five_prime_utr;Parent=Msa1386440-mRNA-1 |
| tig0020816 | five_prime_UTR | 67588 | 67677 | 67588 | ID=Msa1386440-mRNA-1:five_prime_utr;Parent=Msa1386440-mRNA-1 |
| tig0020816 | five_prime_UTR | 60760 | 60782 | 60760 | ID=Msa1386440-mRNA-1:five_prime_utr;Parent=Msa1386440-mRNA-1 |
| tig0020816 | CDS | 60136 | 60759 | 60136 | ID=Msa1386440-mRNA-1:cds;Parent=Msa1386440-mRNA-1 |
| tig0020816 | CDS | 59409 | 59852 | 59409 | ID=Msa1386440-mRNA-1:cds;Parent=Msa1386440-mRNA-1 |
| tig0020816 | CDS | 59186 | 59317 | 59186 | ID=Msa1386440-mRNA-1:cds;Parent=Msa1386440-mRNA-1 |
| tig0020816 | CDS | 58713 | 58894 | 58713 | ID=Msa1386440-mRNA-1:cds;Parent=Msa1386440-mRNA-1 |
| tig0020816 | CDS | 58509 | 58620 | 58509 | ID=Msa1386440-mRNA-1:cds;Parent=Msa1386440-mRNA-1 |
| tig0020816 | CDS | 58250 | 58393 | 58250 | ID=Msa1386440-mRNA-1:cds;Parent=Msa1386440-mRNA-1 |
| tig0020816 | CDS | 57588 | 57701 | 57588 | ID=Msa1386440-mRNA-1:cds;Parent=Msa1386440-mRNA-1 |
| tig0020816 | three_prime_UTR | 57150 | 57587 | 57150 | ID=Msa1386440-mRNA-1:three_prime_utr;Parent=Msa1386440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
