AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073140 MtrunA17_Chr7g0256311 99.755 408 1 0 1 408 1205 1612 0.0 838
Msa1073140 MtrunA17_Chr1g0157851 41.753 388 215 6 2 382 883 1266 9.08e-92 302
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073140 AT5G04140.1 84.314 408 64 0 1 408 1215 1622 0.0 726
Msa1073140 AT5G04140.2 84.314 408 64 0 1 408 1241 1648 0.0 726
Msa1073140 AT2G41220.1 82.108 408 68 2 1 404 1217 1623 0.0 708
Msa1073140 AT5G53460.1 41.237 388 217 6 2 382 1243 1626 4.80e-90 298
Msa1073140 AT5G53460.2 41.237 388 217 6 2 382 1243 1626 4.80e-90 298
Msa1073140 AT5G53460.3 41.237 388 217 6 2 382 1243 1626 4.80e-90 298

Find 156 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACGTTGTATATCTTTA+TGG 0.166652 7_2:-70498322 None:intergenic
GAAAATTACTAACCAAAATA+TGG 0.196843 7_2:+70500301 Msa1073140:three_prime_UTR
GGAAGTTTGATCCCATATTT+TGG 0.197343 7_2:-70500313 None:intergenic
ATTTCTGTACTGCTCAATTT+AGG 0.231571 7_2:-70497120 None:intergenic
AGAGAAGGCTAATGCTTAAC+AGG 0.275984 7_2:-70500417 None:intergenic
TGGTGGCTGTGTGGTTATCC+TGG 0.285906 7_2:+70499448 Msa1073140:CDS
ACAAGTATTTATCACTGTTT+TGG 0.308588 7_2:+70500086 Msa1073140:CDS
ACCTGACTGGCAACACCAAC+TGG 0.314928 7_2:-70496523 None:intergenic
GACTGTTGTCAGGGCATTGC+TGG 0.322748 7_2:+70499224 Msa1073140:intron
CTTCAATTAGTTTCTTTAGC+TGG 0.334182 7_2:-70499870 None:intergenic
TGTCATGATGGCAGCAATAA+TGG 0.336542 7_2:+70496417 Msa1073140:exon
TCCAGTTGGTGTTGCCAGTC+AGG 0.337152 7_2:+70496522 Msa1073140:CDS
CACGATATCACTTGATGAAA+TGG 0.339951 7_2:+70500568 Msa1073140:three_prime_UTR
GGAAGTGCTGGGCAGTCATT+TGG 0.343860 7_2:+70498520 Msa1073140:CDS
GGCCTCTTACATCTGCAAAA+TGG 0.359671 7_2:-70500381 None:intergenic
CAAGTGATATCGTGATGAAC+AGG 0.361445 7_2:-70500559 None:intergenic
GTGGGGAACACTTGCTTGTA+CGG 0.362955 7_2:+70499308 Msa1073140:CDS
GGTCACTTTGCAGTCTGCTT+AGG 0.365472 7_2:+70500180 Msa1073140:CDS
CTTCGTTGCACTCATTCAAA+TGG 0.369275 7_2:+70500626 Msa1073140:three_prime_UTR
GCAGTTTATTCAAATCTGAT+TGG 0.380302 7_2:+70500492 Msa1073140:three_prime_UTR
CACCACGCGTCCAGATTTAC+AGG 0.385389 7_2:+70498499 Msa1073140:intron
GTCACTTTGCAGTCTGCTTA+GGG 0.387520 7_2:+70500181 Msa1073140:CDS
GAGAAGTTAGATGATATAAT+TGG 0.389565 7_2:+70496902 Msa1073140:CDS
GTCACTCCAGTTGACAAGAT+AGG 0.396187 7_2:+70499260 Msa1073140:CDS
CTTGCTGAGGCTGTAGTTGA+AGG 0.398380 7_2:+70499395 Msa1073140:CDS
GTCTGTTTGAAATTTAGTTC+AGG 0.400834 7_2:+70500775 Msa1073140:three_prime_UTR
GGAGGGCAGGTCTTTGTTAG+AGG 0.405109 7_2:+70499338 Msa1073140:CDS
ATAATGGGTGCTGATGAATA+TGG 0.406394 7_2:+70496433 Msa1073140:CDS
AGAGGCACTTTGGCACAGTT+GGG 0.406810 7_2:+70496875 Msa1073140:CDS
CGTTGCAGTTATGTCATACT+TGG 0.412809 7_2:-70500152 None:intergenic
AGAGTTATTCTCAGAGTTGA+TGG 0.414517 7_2:+70496373 Msa1073140:five_prime_UTR
TTTAGCTGGATCTGCCCTAC+AGG 0.417092 7_2:-70499856 None:intergenic
TCTTCTATAAGACTCTCTAA+TGG 0.419307 7_2:+70500677 Msa1073140:three_prime_UTR
GGGCATTGCTGGAGGTGAAT+TGG 0.427539 7_2:+70499235 Msa1073140:intron
CAGTACAGAAATCAGGAATC+AGG 0.433061 7_2:+70497131 Msa1073140:CDS
GTCTTTGTTAGAGGGAAAGC+TGG 0.433097 7_2:+70499347 Msa1073140:CDS
ACAAGGCGAATATTCATTCC+TGG 0.437889 7_2:-70498556 None:intergenic
TCTGCCTGTGGGCGTATAGC+TGG 0.439931 7_2:+70498348 Msa1073140:CDS
GGAATGAATATTCGCCTTGT+AGG 0.440809 7_2:+70498559 Msa1073140:CDS
TGGGGAACACTTGCTTGTAC+GGG 0.442529 7_2:+70499309 Msa1073140:CDS
TCATACTTGGCATTAGCCTC+AGG 0.442910 7_2:-70500139 None:intergenic
TTATTACTTGACCAGGTAAG+AGG 0.446303 7_2:+70496857 Msa1073140:intron
GATGAATTGTTAATAGCTTA+CGG 0.448249 7_2:+70500726 Msa1073140:three_prime_UTR
TTGATTGCGCCAGGCTATGA+AGG 0.449284 7_2:+70500221 Msa1073140:three_prime_UTR
CCTGAGGATGCAGCTATTGT+GGG 0.450482 7_2:+70499290 Msa1073140:CDS
TCCAGATTTACAGGAAGTGC+TGG 0.451595 7_2:+70498508 Msa1073140:intron
AATTGAGCAGTACAGAAATC+AGG 0.451815 7_2:+70497124 Msa1073140:CDS
AACGTAGCTGCTGGAATGAC+AGG 0.453768 7_2:+70499608 Msa1073140:CDS
GATTGCTACTGGATGTGTTA+TGG 0.454271 7_2:+70496474 Msa1073140:CDS
GAGAGGCAAATGATTATGTT+GGG 0.457351 7_2:+70498581 Msa1073140:CDS
TTCACAAGAGATACGTCTCT+TGG 0.458507 7_2:-70496944 None:intergenic
GGAGAGGCAAATGATTATGT+TGG 0.459837 7_2:+70498580 Msa1073140:CDS
GAAGTGCTGGGCAGTCATTT+GGG 0.464463 7_2:+70498521 Msa1073140:CDS
AGCTAGTTGCTGAATACAAC+AGG 0.465073 7_2:+70500849 Msa1073140:three_prime_UTR
AAGAGGCACTTTGGCACAGT+TGG 0.467275 7_2:+70496874 Msa1073140:CDS
AAAATTACTAACCAAAATAT+GGG 0.468201 7_2:+70500302 Msa1073140:three_prime_UTR
GTGAGGCTATTCTGAAGGAC+TGG 0.472980 7_2:+70500062 Msa1073140:CDS
ACATACCAACGGTCCTGTCC+TGG 0.475630 7_2:+70497158 Msa1073140:CDS
TTGGTCTCAATAATTCTGTT+CGG 0.479274 7_2:-70496925 None:intergenic
ACCTGAGGATGCAGCTATTG+TGG 0.482350 7_2:+70499289 Msa1073140:CDS
TGAAACCCTATCTTGTCAAC+TGG 0.484059 7_2:-70499266 None:intergenic
TCACTCCAGTTGACAAGATA+GGG 0.492235 7_2:+70499261 Msa1073140:CDS
GTCATGATGGCAGCAATAAT+GGG 0.493273 7_2:+70496418 Msa1073140:exon
AACGTTGATCGTTCTGCCTG+TGG 0.497004 7_2:+70498336 Msa1073140:CDS
ATGTGGTTCCCTTCATAGCC+TGG 0.498023 7_2:-70500230 None:intergenic
GGTGCTGATGAATATGGGTT+TGG 0.498429 7_2:+70496439 Msa1073140:CDS
GTTGATGGTGGATTTAGAAG+TGG 0.501814 7_2:+70496388 Msa1073140:five_prime_UTR
GAAATATTACTCACTTTCCC+AGG 0.502489 7_2:-70499466 None:intergenic
GTGGGTAGAAACGTAGCTGC+TGG 0.507100 7_2:+70499599 Msa1073140:CDS
TTAGAGGGAAAGCTGGGGAA+AGG 0.507524 7_2:+70499354 Msa1073140:CDS
CCCACAATAGCTGCATCCTC+AGG 0.510040 7_2:-70499290 None:intergenic
TCAGGGGTGTCTTCTTCACT+AGG 0.510865 7_2:-70500121 None:intergenic
TCAGTGGCAATGATTGCTAC+TGG 0.512373 7_2:+70496463 Msa1073140:CDS
TTCGTTGCACTCATTCAAAT+GGG 0.513298 7_2:+70500627 Msa1073140:three_prime_UTR
ACTTGCTTGTACGGGGCCAC+AGG 0.514364 7_2:+70499317 Msa1073140:CDS
GGTGTTATTGCAAAGAAATA+CGG 0.517158 7_2:+70498369 Msa1073140:CDS
CTTCCCATTAAAACACCGCT+GGG 0.517187 7_2:+70500331 Msa1073140:three_prime_UTR
TGCTGGAATGACAGGAGGGT+TGG 0.519339 7_2:+70499616 Msa1073140:CDS
TGACATAACTGCAACGGAGC+AGG 0.523047 7_2:+70500159 Msa1073140:CDS
ACTTCCCATTAAAACACCGC+TGG 0.523435 7_2:+70500330 Msa1073140:three_prime_UTR
GTTTATTCAAATCTGATTGG+AGG 0.527701 7_2:+70500495 Msa1073140:three_prime_UTR
GGTGGCTGTGTGGTTATCCT+GGG 0.532578 7_2:+70499449 Msa1073140:CDS
TTGCTGAGGCTGTAGTTGAA+GGG 0.537011 7_2:+70499396 Msa1073140:CDS
TCTTTGTTAGAGGGAAAGCT+GGG 0.542766 7_2:+70499348 Msa1073140:CDS
TGACCAGGTAAGAGGCACTT+TGG 0.546244 7_2:+70496865 Msa1073140:intron
AATCATTTGCCTCTCCTACA+AGG 0.546997 7_2:-70498573 None:intergenic
AGCGAGTAACAGCACCTGTA+GGG 0.549865 7_2:+70499842 Msa1073140:CDS
AAGCTAATATTGATTGCGCC+AGG 0.550958 7_2:+70500212 Msa1073140:three_prime_UTR
TTTGGGTGCTTTCTGACACC+AGG 0.552265 7_2:+70498538 Msa1073140:CDS
TAATGGGTGCTGATGAATAT+GGG 0.553002 7_2:+70496434 Msa1073140:CDS
TGAACTAAATTTCAAACAGA+CGG 0.553100 7_2:-70500773 None:intergenic
AGGACAGGACCGTTGGTATG+TGG 0.557294 7_2:-70497156 None:intergenic
AACACCAACTGGACAATTGT+TGG 0.557955 7_2:-70496512 None:intergenic
GGCAAATGATTATGTTGGGA+AGG 0.559978 7_2:+70498585 Msa1073140:CDS
GCAAAGAAATACGGTGACAC+TGG 0.562419 7_2:+70498378 Msa1073140:CDS
CACACCAACAATTGTCCAGT+TGG 0.563724 7_2:+70496508 Msa1073140:CDS
GAACTAAATTTCAAACAGAC+GGG 0.569995 7_2:-70500772 None:intergenic
CATACTTGGCATTAGCCTCA+GGG 0.571181 7_2:-70500138 None:intergenic
GAGGGCAGGTCTTTGTTAGA+GGG 0.571600 7_2:+70499339 Msa1073140:CDS
CCTCTTCTTGTACGTAGCTG+AGG 0.574674 7_2:+70496675 Msa1073140:CDS
TGAATATGGGTTTGGTTCAG+TGG 0.575721 7_2:+70496447 Msa1073140:CDS
GAATATTCGCCTTGTAGGAG+AGG 0.576185 7_2:+70498564 Msa1073140:CDS
ACAAGATCACCAGGAACACC+AGG 0.576501 7_2:-70496649 None:intergenic
TGCTGAGGCTGTAGTTGAAG+GGG 0.577155 7_2:+70499397 Msa1073140:CDS
CAGCGAGTAACAGCACCTGT+AGG 0.586513 7_2:+70499841 Msa1073140:CDS
TGAGGCTATTCTGAAGGACT+GGG 0.589763 7_2:+70500063 Msa1073140:CDS
AACAAAGACCTGCCCTCCTG+TGG 0.590522 7_2:-70499333 None:intergenic
CCTCAGCTACGTACAAGAAG+AGG 0.590689 7_2:-70496675 None:intergenic
TGACTATACAAATGTGTCTG+AGG 0.593689 7_2:-70500442 None:intergenic
ACGTTGATCGTTCTGCCTGT+GGG 0.594095 7_2:+70498337 Msa1073140:CDS
ATCATCCAGGACAGGACCGT+TGG 0.595675 7_2:-70497163 None:intergenic
GAGGCACTTTGGCACAGTTG+GGG 0.596495 7_2:+70496876 Msa1073140:CDS
AACACCAGCTATACGCCCAC+AGG 0.598501 7_2:-70498352 None:intergenic
GATGGTGAAAATAAATTAGT+CGG 0.605719 7_2:+70500526 Msa1073140:three_prime_UTR
GTTATTCTCAGAGTTGATGG+TGG 0.605877 7_2:+70496376 Msa1073140:five_prime_UTR
ATGCTTAACAGGGATGTACA+AGG 0.606378 7_2:-70500406 None:intergenic
GAGGCTGTAGTTGAAGGGGC+AGG 0.606563 7_2:+70499401 Msa1073140:CDS
CAAAGGTGAGGCTATTCTGA+AGG 0.607108 7_2:+70500057 Msa1073140:CDS
AGTAAAACATCATCCAGGAC+AGG 0.610541 7_2:-70497171 None:intergenic
GGGGAACACTTGCTTGTACG+GGG 0.614555 7_2:+70499310 Msa1073140:CDS
CAAGATAGGGTTTCAACCTG+AGG 0.617150 7_2:+70499274 Msa1073140:CDS
TGATTGCGCCAGGCTATGAA+GGG 0.620270 7_2:+70500222 Msa1073140:three_prime_UTR
GCTTGTACGGGGCCACAGGA+GGG 0.622091 7_2:+70499321 Msa1073140:CDS
CCAGATTTACAGGAAGTGCT+GGG 0.622507 7_2:+70498509 Msa1073140:intron
CTGCTAGTAAAACATCATCC+AGG 0.624951 7_2:-70497176 None:intergenic
AACGGGTAGCAACAAAGGTG+AGG 0.627525 7_2:+70500045 Msa1073140:CDS
CATTGTTGTGAGTACATGAC+TGG 0.632668 7_2:+70499428 Msa1073140:CDS
CTTCTTGTACGTAGCTGAGG+AGG 0.636086 7_2:+70496678 Msa1073140:CDS
TGTTGTCAGGGCATTGCTGG+AGG 0.637672 7_2:+70499227 Msa1073140:intron
CAAGTATGACATAACTGCAA+CGG 0.639705 7_2:+70500153 Msa1073140:CDS
CAACTGGACAATTGTTGGTG+TGG 0.640712 7_2:-70496507 None:intergenic
AAGAGGTTAACAAGATCACC+AGG 0.642743 7_2:-70496658 None:intergenic
CATTTGAATGAGTGCAACGA+AGG 0.645203 7_2:-70500625 None:intergenic
GGGGTGTCTTCTTCACTAGG+TGG 0.645311 7_2:-70500118 None:intergenic
AAGTGGAGTTGATGTCATGA+TGG 0.647680 7_2:+70496405 Msa1073140:exon
ATACTTGGCATTAGCCTCAG+GGG 0.648159 7_2:-70500137 None:intergenic
GATAAGGAAGCTATCAACAA+GGG 0.648239 7_2:+70500277 Msa1073140:three_prime_UTR
GTAGCTGCTGGAATGACAGG+AGG 0.648399 7_2:+70499611 Msa1073140:CDS
TGTCAGAAACTCACTTGCTG+AGG 0.649624 7_2:+70499382 Msa1073140:CDS
CTGAGGATGCAGCTATTGTG+GGG 0.650622 7_2:+70499291 Msa1073140:CDS
GTACATGACTGGTGGCTGTG+TGG 0.653385 7_2:+70499439 Msa1073140:CDS
AAGTGATATCGTGATGAACA+GGG 0.659337 7_2:-70500558 None:intergenic
GAGAAGGCTAATGCTTAACA+GGG 0.662541 7_2:-70500416 None:intergenic
GGACAACACTCTCATTCCCA+AGG 0.666865 7_2:+70499655 Msa1073140:CDS
TTAACAGGGATGTACAAGGA+GGG 0.672882 7_2:-70500402 None:intergenic
AATCAGGAGCCACATACCAA+CGG 0.672907 7_2:+70497147 Msa1073140:CDS
TAGCTGCTGGAATGACAGGA+GGG 0.673815 7_2:+70499612 Msa1073140:CDS
GTTGGCTTACATTCTTGACG+AGG 0.678880 7_2:+70499634 Msa1073140:CDS
GGATAAGGAAGCTATCAACA+AGG 0.679171 7_2:+70500276 Msa1073140:three_prime_UTR
TGTTGTGAGTACATGACTGG+TGG 0.681763 7_2:+70499431 Msa1073140:CDS
AATGTGTCTGAGGAAAGAGA+AGG 0.697823 7_2:-70500432 None:intergenic
CTTAACAGGGATGTACAAGG+AGG 0.705343 7_2:-70500403 None:intergenic
CTTTGTTAGAGGGAAAGCTG+GGG 0.719524 7_2:+70499349 Msa1073140:CDS
TGATATGAATGATAGCAATG+TGG 0.753667 7_2:+70500826 Msa1073140:three_prime_UTR
TGAGATTGAATGAAGCCCAG+CGG 0.755743 7_2:-70500346 None:intergenic
TAGTGAAGAAGACACCCCTG+AGG 0.778604 7_2:+70500123 Msa1073140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGTTATATTTATTTC+GGG - chr7_2:70496823-70496842 None:intergenic 10.0%
!! TAAGAAAATTTATTGTAAAA+GGG - chr7_2:70497261-70497280 None:intergenic 10.0%
!! TTAAGAAAATTTATTGTAAA+AGG - chr7_2:70497262-70497281 None:intergenic 10.0%
!! TATATTATAATTTAGACTTT+GGG + chr7_2:70497614-70497633 Msa1073140:intron 10.0%
!! AGTAATTCAATTTATATAAA+TGG + chr7_2:70498052-70498071 Msa1073140:intron 10.0%
!! ATATATGTTAATAATCATAA+TGG + chr7_2:70499986-70500005 Msa1073140:intron 10.0%
!!! ATATTTTGAAATTACCTTAT+TGG + chr7_2:70496744-70496763 Msa1073140:intron 15.0%
!! CATAAAAATTAAAACCAATA+AGG - chr7_2:70496761-70496780 None:intergenic 15.0%
!! TTAGCAATAAAAAAAACTAT+CGG + chr7_2:70497232-70497251 Msa1073140:intron 15.0%
!! CTATATTATAATTTAGACTT+TGG + chr7_2:70497613-70497632 Msa1073140:intron 15.0%
!!! ATATTTAACCTTATTCTTTT+TGG - chr7_2:70497780-70497799 None:intergenic 15.0%
!!! TAGTTTAAGTGTTTTTTAAT+GGG - chr7_2:70498017-70498036 None:intergenic 15.0%
!!! TTAGTTTAAGTGTTTTTTAA+TGG - chr7_2:70498018-70498037 None:intergenic 15.0%
!! ATTTATATAAATGGTTACAA+AGG + chr7_2:70498061-70498080 Msa1073140:intron 15.0%
!! ATTCATTATGGTAATTTAAA+AGG - chr7_2:70499115-70499134 None:intergenic 15.0%
!! AATTATAGTGATTGTATATT+GGG - chr7_2:70499911-70499930 None:intergenic 15.0%
!! AAATTATAGTGATTGTATAT+TGG - chr7_2:70499912-70499931 None:intergenic 15.0%
!! AAAATTACTAACCAAAATAT+GGG + chr7_2:70500302-70500321 Msa1073140:three_prime_UTR 15.0%
!! CAATAATCTAAATTTCAAAG+TGG - chr7_2:70496786-70496805 None:intergenic 20.0%
!!! AATTATCATTTTCAGAATGT+TGG + chr7_2:70497093-70497112 Msa1073140:intron 20.0%
!!! ATTATCATTTTCAGAATGTT+GGG + chr7_2:70497094-70497113 Msa1073140:intron 20.0%
!!! AACACTTATTGTTGTTTATA+AGG - chr7_2:70497214-70497233 None:intergenic 20.0%
!! ATTCTTCAATTCTTTATTGT+GGG - chr7_2:70497340-70497359 None:intergenic 20.0%
!! TATTCTTCAATTCTTTATTG+TGG - chr7_2:70497341-70497360 None:intergenic 20.0%
!! TGAAGAATATAATATGAGAT+AGG + chr7_2:70497352-70497371 Msa1073140:intron 20.0%
!! CACAAACTTAAATTCTTATA+TGG - chr7_2:70497398-70497417 None:intergenic 20.0%
!!! AAAATAAGCAAATTTGGTTT+TGG + chr7_2:70497814-70497833 Msa1073140:intron 20.0%
!!! CTACTTTATTTTTCAGATTA+TGG - chr7_2:70497869-70497888 None:intergenic 20.0%
!! ACTAATTCTCAACATTTATT+AGG - chr7_2:70497905-70497924 None:intergenic 20.0%
!!! ATTTTTTATCCAACATTTCA+TGG - chr7_2:70498097-70498116 None:intergenic 20.0%
!!! GTTTAGCTTTCAATTAAATA+CGG - chr7_2:70498471-70498490 None:intergenic 20.0%
!! AACATGAATTTCATTCATTA+TGG - chr7_2:70499127-70499146 None:intergenic 20.0%
!! ATTATAGTGATTGTATATTG+GGG - chr7_2:70499910-70499929 None:intergenic 20.0%
!! GAAAATTACTAACCAAAATA+TGG + chr7_2:70500301-70500320 Msa1073140:three_prime_UTR 20.0%
! TGTAATGGCAAATTAGATAA+AGG - chr7_2:70496599-70496618 None:intergenic 25.0%
!! TAGTTATATTTATTTCGGGT+AGG - chr7_2:70496819-70496838 None:intergenic 25.0%
! GAGAAGTTAGATGATATAAT+TGG + chr7_2:70496902-70496921 Msa1073140:CDS 25.0%
! CAGAAACTTATTAAACTCAA+AGG - chr7_2:70497050-70497069 None:intergenic 25.0%
! GACTATGATTCATATACAAA+TGG - chr7_2:70497287-70497306 None:intergenic 25.0%
! GTCATATTACTATTCAATGT+TGG + chr7_2:70497482-70497501 Msa1073140:intron 25.0%
! TAGACTTTATAAGCTATGTT+TGG + chr7_2:70497683-70497702 Msa1073140:intron 25.0%
! AAATAGAACATGACCAAAAA+AGG + chr7_2:70497722-70497741 Msa1073140:intron 25.0%
! ACCAAAAAAGGTGATAAATT+TGG + chr7_2:70497734-70497753 Msa1073140:intron 25.0%
!!! ACCAAATTTATCACCTTTTT+TGG - chr7_2:70497738-70497757 None:intergenic 25.0%
!!! CCAAATTTGCTTATTTTACA+AGG - chr7_2:70497811-70497830 None:intergenic 25.0%
! CCTTGTAAAATAAGCAAATT+TGG + chr7_2:70497808-70497827 Msa1073140:intron 25.0%
!!! CTTTATTTTTCAGATTATGG+AGG - chr7_2:70497866-70497885 None:intergenic 25.0%
!!! TAGTGTTTTTTTAGATCTAG+TGG + chr7_2:70497921-70497940 Msa1073140:intron 25.0%
! TATAAATTGAATTACTCACC+AGG - chr7_2:70498048-70498067 None:intergenic 25.0%
!!! AACAGCTTTTTCATTTTCAA+TGG - chr7_2:70498295-70498314 None:intergenic 25.0%
! ATCAACGTTGTATATCTTTA+TGG - chr7_2:70498325-70498344 None:intergenic 25.0%
! ATTAAATTTCGAGAGTAGTT+AGG + chr7_2:70498711-70498730 Msa1073140:intron 25.0%
! TTAAATTTCGAGAGTAGTTA+GGG + chr7_2:70498712-70498731 Msa1073140:intron 25.0%
! ACAATGAATCTAAACTACTT+GGG - chr7_2:70498868-70498887 None:intergenic 25.0%
! TACAATGAATCTAAACTACT+TGG - chr7_2:70498869-70498888 None:intergenic 25.0%
! ATTAAATTTCGAGAGTAGTT+AGG + chr7_2:70498711-70498730 Msa1073140:intron 25.0%
! TTAAATTTCGAGAGTAGTTA+GGG + chr7_2:70498712-70498731 Msa1073140:intron 25.0%
! ACAATGAATCTAAACTACTT+GGG - chr7_2:70498868-70498887 None:intergenic 25.0%
! TACAATGAATCTAAACTACT+TGG - chr7_2:70498869-70498888 None:intergenic 25.0%
! GAACTAAAATAATTCAGAAC+AGG - chr7_2:70499164-70499183 None:intergenic 25.0%
!! TTAGTTCGATAATTAAGTTG+AGG + chr7_2:70499177-70499196 Msa1073140:intron 25.0%
!! AAGTATTTGAAGTAAGCTAA+CGG + chr7_2:70499546-70499565 Msa1073140:intron 25.0%
!! ATTTTATACCTTAACAGTGT+GGG + chr7_2:70499581-70499600 Msa1073140:intron 25.0%
!!! TCTCCATTTTTCATTACAAA+TGG + chr7_2:70499709-70499728 Msa1073140:intron 25.0%
!!! CTCCATTTTTCATTACAAAT+GGG + chr7_2:70499710-70499729 Msa1073140:intron 25.0%
!! AACAAGAACAACAACTTTTA+AGG - chr7_2:70499751-70499770 None:intergenic 25.0%
! TTATAGTGATTGTATATTGG+GGG - chr7_2:70499909-70499928 None:intergenic 25.0%
!! ACAAGTATTTATCACTGTTT+TGG + chr7_2:70500086-70500105 Msa1073140:CDS 25.0%
! CTTATCCCTATAAAAAAACA+GGG - chr7_2:70500263-70500282 None:intergenic 25.0%
! GATGGTGAAAATAAATTAGT+CGG + chr7_2:70500526-70500545 Msa1073140:three_prime_UTR 25.0%
! GATGAATTGTTAATAGCTTA+CGG + chr7_2:70500726-70500745 Msa1073140:three_prime_UTR 25.0%
! TGAACTAAATTTCAAACAGA+CGG - chr7_2:70500776-70500795 None:intergenic 25.0%
AATTTGCCATTACATTTCAG+AGG + chr7_2:70496605-70496624 Msa1073140:intron 30.0%
ATTTGCCATTACATTTCAGA+GGG + chr7_2:70496606-70496625 Msa1073140:intron 30.0%
! TATTTATTTCGGGTAGGAAA+AGG - chr7_2:70496813-70496832 None:intergenic 30.0%
TTGGTCTCAATAATTCTGTT+CGG - chr7_2:70496928-70496947 None:intergenic 30.0%
ATAAGCTAATACATACAGAG+AGG - chr7_2:70496997-70497016 None:intergenic 30.0%
TTAAACTCAAAGGCAGAAAA+AGG - chr7_2:70497040-70497059 None:intergenic 30.0%
ATTTCTGTACTGCTCAATTT+AGG - chr7_2:70497123-70497142 None:intergenic 30.0%
TTGTTTATAAGGTTACCTCT+GGG - chr7_2:70497203-70497222 None:intergenic 30.0%
!! ACCTGATAGTGGTTATAAAT+GGG - chr7_2:70497464-70497483 None:intergenic 30.0%
ATAGTAATATGACCTGATAG+TGG - chr7_2:70497475-70497494 None:intergenic 30.0%
! TAAATTTGGTTCCACTGAAA+AGG + chr7_2:70497748-70497767 Msa1073140:intron 30.0%
! AAATTTGGTTCCACTGAAAA+GGG + chr7_2:70497749-70497768 Msa1073140:intron 30.0%
GGGTAAAACCAAAAAGAATA+AGG + chr7_2:70497769-70497788 Msa1073140:intron 30.0%
TAAATGTTGAGAACTATGCA+AGG - chr7_2:70497971-70497990 None:intergenic 30.0%
ACTTAAACTAATGTGTTTCC+TGG + chr7_2:70498027-70498046 Msa1073140:intron 30.0%
!! GGTGTTATTGCAAAGAAATA+CGG + chr7_2:70498369-70498388 Msa1073140:CDS 30.0%
TAGAGTTCAAACTGCATATT+AGG - chr7_2:70498437-70498456 None:intergenic 30.0%
!! TGTGCACGAGAATTTATTTT+TGG + chr7_2:70498629-70498648 Msa1073140:intron 30.0%
!! GTGCACGAGAATTTATTTTT+GGG + chr7_2:70498630-70498649 Msa1073140:intron 30.0%
AAGTGGAAAATTAAAACGGA+GGG - chr7_2:70498845-70498864 None:intergenic 30.0%
TGGGAAGTGGAAAATTAAAA+CGG - chr7_2:70498849-70498868 None:intergenic 30.0%
GATTCATTGTAAAACACGAT+CGG + chr7_2:70498878-70498897 Msa1073140:intron 30.0%
ATTCATTGTAAAACACGATC+GGG + chr7_2:70498879-70498898 Msa1073140:intron 30.0%
AAGTGGAAAATTAAAACGGA+GGG - chr7_2:70498845-70498864 None:intergenic 30.0%
TGGGAAGTGGAAAATTAAAA+CGG - chr7_2:70498849-70498868 None:intergenic 30.0%
GATTCATTGTAAAACACGAT+CGG + chr7_2:70498878-70498897 Msa1073140:intron 30.0%
ATTCATTGTAAAACACGATC+GGG + chr7_2:70498879-70498898 Msa1073140:intron 30.0%
TTTATTTGTGACTGTTGTCA+GGG + chr7_2:70499215-70499234 Msa1073140:intron 30.0%
! CATTTTATACCTTAACAGTG+TGG + chr7_2:70499580-70499599 Msa1073140:intron 30.0%
TGGAGAAAGAATAGTGAATT+GGG - chr7_2:70499695-70499714 None:intergenic 30.0%
ATGGAGAAAGAATAGTGAAT+TGG - chr7_2:70499696-70499715 None:intergenic 30.0%
CTCCCATTTGTAATGAAAAA+TGG - chr7_2:70499715-70499734 None:intergenic 30.0%
! CATTTTTCATTACAAATGGG+AGG + chr7_2:70499713-70499732 Msa1073140:intron 30.0%
! CTTCAATTAGTTTCTTTAGC+TGG - chr7_2:70499873-70499892 None:intergenic 30.0%
CATAAGCAGAAAATCATCTA+TGG + chr7_2:70499950-70499969 Msa1073140:intron 30.0%
! TTTTTAACCTCTTTGCATGA+AGG + chr7_2:70500018-70500037 Msa1073140:intron 30.0%
TCTTTGCATGAAGGAAAAAA+CGG + chr7_2:70500027-70500046 Msa1073140:intron 30.0%
!!! TTGTGTCCCTGTTTTTTTAT+AGG + chr7_2:70500254-70500273 Msa1073140:three_prime_UTR 30.0%
!!! TGTGTCCCTGTTTTTTTATA+GGG + chr7_2:70500255-70500274 Msa1073140:three_prime_UTR 30.0%
CCTTATCCCTATAAAAAAAC+AGG - chr7_2:70500264-70500283 None:intergenic 30.0%
!!! CCTGTTTTTTTATAGGGATA+AGG + chr7_2:70500261-70500280 Msa1073140:three_prime_UTR 30.0%
GCAGTTTATTCAAATCTGAT+TGG + chr7_2:70500492-70500511 Msa1073140:three_prime_UTR 30.0%
GTTTATTCAAATCTGATTGG+AGG + chr7_2:70500495-70500514 Msa1073140:three_prime_UTR 30.0%
TCTTCTATAAGACTCTCTAA+TGG + chr7_2:70500677-70500696 Msa1073140:three_prime_UTR 30.0%
GAACTAAATTTCAAACAGAC+GGG - chr7_2:70500775-70500794 None:intergenic 30.0%
! GTCTGTTTGAAATTTAGTTC+AGG + chr7_2:70500775-70500794 Msa1073140:three_prime_UTR 30.0%
TGATATGAATGATAGCAATG+TGG + chr7_2:70500826-70500845 Msa1073140:three_prime_UTR 30.0%
AGAGTTATTCTCAGAGTTGA+TGG + chr7_2:70496373-70496392 Msa1073140:five_prime_UTR 35.0%
!! ATAATGGGTGCTGATGAATA+TGG + chr7_2:70496433-70496452 Msa1073140:CDS 35.0%
!! TAATGGGTGCTGATGAATAT+GGG + chr7_2:70496434-70496453 Msa1073140:CDS 35.0%
CCTGGTCAAGTAATAATGAT+AGG - chr7_2:70496853-70496872 None:intergenic 35.0%
CCTATCATTATTACTTGACC+AGG + chr7_2:70496850-70496869 Msa1073140:intron 35.0%
TTATTACTTGACCAGGTAAG+AGG + chr7_2:70496857-70496876 Msa1073140:intron 35.0%
AATTGAGCAGTACAGAAATC+AGG + chr7_2:70497124-70497143 Msa1073140:CDS 35.0%
GTTGTTTATAAGGTTACCTC+TGG - chr7_2:70497204-70497223 None:intergenic 35.0%
ATAGTCAGTGCTCAAATACT+AGG + chr7_2:70497301-70497320 Msa1073140:intron 35.0%
AACCACAAAAGCTAGAACAT+GGG + chr7_2:70497426-70497445 Msa1073140:intron 35.0%
ACCCATTTATAACCACTATC+AGG + chr7_2:70497460-70497479 Msa1073140:intron 35.0%
!! GACCTGATAGTGGTTATAAA+TGG - chr7_2:70497465-70497484 None:intergenic 35.0%
! TAGAAATCTGAAGCATGACT+TGG + chr7_2:70497533-70497552 Msa1073140:intron 35.0%
! AGAAATCTGAAGCATGACTT+GGG + chr7_2:70497534-70497553 Msa1073140:intron 35.0%
!!! TTTGGTTTTACCCTTTTCAG+TGG - chr7_2:70497762-70497781 None:intergenic 35.0%
GCAATCTAACCATGAAATGT+TGG + chr7_2:70498085-70498104 Msa1073140:intron 35.0%
GAGAGGCAAATGATTATGTT+GGG + chr7_2:70498581-70498600 Msa1073140:CDS 35.0%
ATCTAGTAATGCAGAGTATG+AGG + chr7_2:70498680-70498699 Msa1073140:intron 35.0%
! ATGAAGGTGTAAGAAAGTGA+AGG + chr7_2:70498740-70498759 Msa1073140:intron 35.0%
AAAGTGAAGGAAAATCTGAG+TGG + chr7_2:70498753-70498772 Msa1073140:intron 35.0%
GAAGTGGAAAATTAAAACGG+AGG - chr7_2:70498846-70498865 None:intergenic 35.0%
AATCTAAACTACTTGGGAAG+TGG - chr7_2:70498862-70498881 None:intergenic 35.0%
! ATGAAGGTGTAAGAAAGTGA+AGG + chr7_2:70498740-70498759 Msa1073140:intron 35.0%
AAAGTGAAGGAAAATCTGAG+TGG + chr7_2:70498753-70498772 Msa1073140:intron 35.0%
GAAGTGGAAAATTAAAACGG+AGG - chr7_2:70498846-70498865 None:intergenic 35.0%
AATCTAAACTACTTGGGAAG+TGG - chr7_2:70498862-70498881 None:intergenic 35.0%
GTTTATTTGTGACTGTTGTC+AGG + chr7_2:70499214-70499233 Msa1073140:intron 35.0%
GAAATATTACTCACTTTCCC+AGG - chr7_2:70499469-70499488 None:intergenic 35.0%
AAAAGCTAAGCGAAGAAAGA+GGG - chr7_2:70499521-70499540 None:intergenic 35.0%
! TATTTGAAGTAAGCTAACGG+AGG + chr7_2:70499549-70499568 Msa1073140:intron 35.0%
AGAATAGTGAATTGGGTTCT+GGG - chr7_2:70499688-70499707 None:intergenic 35.0%
AAGAATAGTGAATTGGGTTC+TGG - chr7_2:70499689-70499708 None:intergenic 35.0%
!!! GTTTTTTCCTTCATGCAAAG+AGG - chr7_2:70500028-70500047 None:intergenic 35.0%
CTTTGCATGAAGGAAAAAAC+GGG + chr7_2:70500028-70500047 Msa1073140:intron 35.0%
!!! TTTATCACTGTTTTGGCAGT+TGG + chr7_2:70500093-70500112 Msa1073140:CDS 35.0%
CAAGTATGACATAACTGCAA+CGG + chr7_2:70500153-70500172 Msa1073140:CDS 35.0%
AAAAACAGGGACACAATATG+TGG - chr7_2:70500250-70500269 None:intergenic 35.0%
GATAAGGAAGCTATCAACAA+GGG + chr7_2:70500277-70500296 Msa1073140:three_prime_UTR 35.0%
! GGAAGTTTGATCCCATATTT+TGG - chr7_2:70500316-70500335 None:intergenic 35.0%
! TTCCATTTTGCAGATGTAAG+AGG + chr7_2:70500379-70500398 Msa1073140:three_prime_UTR 35.0%
TGACTATACAAATGTGTCTG+AGG - chr7_2:70500445-70500464 None:intergenic 35.0%
! AATCTGATTGGAGGTTTTTG+TGG + chr7_2:70500504-70500523 Msa1073140:three_prime_UTR 35.0%
AAGTGATATCGTGATGAACA+GGG - chr7_2:70500561-70500580 None:intergenic 35.0%
CACGATATCACTTGATGAAA+TGG + chr7_2:70500568-70500587 Msa1073140:three_prime_UTR 35.0%
TTCGTTGCACTCATTCAAAT+GGG + chr7_2:70500627-70500646 Msa1073140:three_prime_UTR 35.0%
!! GTTATTCTCAGAGTTGATGG+TGG + chr7_2:70496376-70496395 Msa1073140:five_prime_UTR 40.0%
!! GTTGATGGTGGATTTAGAAG+TGG + chr7_2:70496388-70496407 Msa1073140:five_prime_UTR 40.0%
!! AAGTGGAGTTGATGTCATGA+TGG + chr7_2:70496405-70496424 Msa1073140:exon 40.0%
TGTCATGATGGCAGCAATAA+TGG + chr7_2:70496417-70496436 Msa1073140:exon 40.0%
GTCATGATGGCAGCAATAAT+GGG + chr7_2:70496418-70496437 Msa1073140:exon 40.0%
! TGAATATGGGTTTGGTTCAG+TGG + chr7_2:70496447-70496466 Msa1073140:CDS 40.0%
GATTGCTACTGGATGTGTTA+TGG + chr7_2:70496474-70496493 Msa1073140:CDS 40.0%
AACACCAACTGGACAATTGT+TGG - chr7_2:70496515-70496534 None:intergenic 40.0%
! CAGTTCTCTAAAAACCTGAC+TGG - chr7_2:70496539-70496558 None:intergenic 40.0%
!! CTCTTCCCTCTGAAATGTAA+TGG - chr7_2:70496614-70496633 None:intergenic 40.0%
AAGAGGTTAACAAGATCACC+AGG - chr7_2:70496661-70496680 None:intergenic 40.0%
!!! GTAGCTGAGGAGGTATTTTA+TGG + chr7_2:70496688-70496707 Msa1073140:intron 40.0%
TTCACAAGAGATACGTCTCT+TGG - chr7_2:70496947-70496966 None:intergenic 40.0%
CAGTACAGAAATCAGGAATC+AGG + chr7_2:70497131-70497150 Msa1073140:CDS 40.0%
AGTAAAACATCATCCAGGAC+AGG - chr7_2:70497174-70497193 None:intergenic 40.0%
CTGCTAGTAAAACATCATCC+AGG - chr7_2:70497179-70497198 None:intergenic 40.0%
CAACCACAAAAGCTAGAACA+TGG + chr7_2:70497425-70497444 Msa1073140:intron 40.0%
ACCACAAAAGCTAGAACATG+GGG + chr7_2:70497427-70497446 Msa1073140:intron 40.0%
!! TGCTTCAGATTTCTAGTCCT+AGG - chr7_2:70497528-70497547 None:intergenic 40.0%
GAAAATGGTTCGATAGCATG+TGG + chr7_2:70497563-70497582 Msa1073140:intron 40.0%
! ACCTTACAAGTTGGCATTAC+GGG - chr7_2:70497651-70497670 None:intergenic 40.0%
! CACCTTACAAGTTGGCATTA+CGG - chr7_2:70497652-70497671 None:intergenic 40.0%
AATCCTCACACCTTACAAGT+TGG - chr7_2:70497660-70497679 None:intergenic 40.0%
! CTTTGAGAGAGAGCAATCTA+GGG - chr7_2:70498120-70498139 None:intergenic 40.0%
TTTCAATGGCATCTGCAATC+TGG - chr7_2:70498281-70498300 None:intergenic 40.0%
ACAAGGCGAATATTCATTCC+TGG - chr7_2:70498559-70498578 None:intergenic 40.0%
GGAATGAATATTCGCCTTGT+AGG + chr7_2:70498559-70498578 Msa1073140:CDS 40.0%
AATCATTTGCCTCTCCTACA+AGG - chr7_2:70498576-70498595 None:intergenic 40.0%
GGAGAGGCAAATGATTATGT+TGG + chr7_2:70498580-70498599 Msa1073140:CDS 40.0%
GGCAAATGATTATGTTGGGA+AGG + chr7_2:70498585-70498604 Msa1073140:CDS 40.0%
AGTAGTTAGGGAGTGAATGA+AGG + chr7_2:70498724-70498743 Msa1073140:intron 40.0%
AGTAGTTAGGGAGTGAATGA+AGG + chr7_2:70498724-70498743 Msa1073140:intron 40.0%
TCACTCCAGTTGACAAGATA+GGG + chr7_2:70499261-70499280 Msa1073140:CDS 40.0%
TGAAACCCTATCTTGTCAAC+TGG - chr7_2:70499269-70499288 None:intergenic 40.0%
TCTTTGTTAGAGGGAAAGCT+GGG + chr7_2:70499348-70499367 Msa1073140:CDS 40.0%
CATTGTTGTGAGTACATGAC+TGG + chr7_2:70499428-70499447 Msa1073140:CDS 40.0%
AAAGCTAAGCGAAGAAAGAG+GGG - chr7_2:70499520-70499539 None:intergenic 40.0%
GAAAAGCTAAGCGAAGAAAG+AGG - chr7_2:70499522-70499541 None:intergenic 40.0%
GAATAGTGAATTGGGTTCTG+GGG - chr7_2:70499687-70499706 None:intergenic 40.0%
ATATTGGGGGCTTACAACAT+GGG - chr7_2:70499896-70499915 None:intergenic 40.0%
TATATTGGGGGCTTACAACA+TGG - chr7_2:70499897-70499916 None:intergenic 40.0%
GAAAAAACGGGTAGCAACAA+AGG + chr7_2:70500040-70500059 Msa1073140:CDS 40.0%
CGTTGCAGTTATGTCATACT+TGG - chr7_2:70500155-70500174 None:intergenic 40.0%
! AAGCTAATATTGATTGCGCC+AGG + chr7_2:70500212-70500231 Msa1073140:three_prime_UTR 40.0%
GGATAAGGAAGCTATCAACA+AGG + chr7_2:70500276-70500295 Msa1073140:three_prime_UTR 40.0%
TTAACAGGGATGTACAAGGA+GGG - chr7_2:70500405-70500424 None:intergenic 40.0%
ATGCTTAACAGGGATGTACA+AGG - chr7_2:70500409-70500428 None:intergenic 40.0%
GAGAAGGCTAATGCTTAACA+GGG - chr7_2:70500419-70500438 None:intergenic 40.0%
AGAGAAGGCTAATGCTTAAC+AGG - chr7_2:70500420-70500439 None:intergenic 40.0%
AATGTGTCTGAGGAAAGAGA+AGG - chr7_2:70500435-70500454 None:intergenic 40.0%
! TGATTGGAGGTTTTTGTGGA+TGG + chr7_2:70500508-70500527 Msa1073140:three_prime_UTR 40.0%
CAAGTGATATCGTGATGAAC+AGG - chr7_2:70500562-70500581 None:intergenic 40.0%
CATTTGAATGAGTGCAACGA+AGG - chr7_2:70500628-70500647 None:intergenic 40.0%
CTTCGTTGCACTCATTCAAA+TGG + chr7_2:70500626-70500645 Msa1073140:three_prime_UTR 40.0%
!! GGTGCTGATGAATATGGGTT+TGG + chr7_2:70496439-70496458 Msa1073140:CDS 45.0%
TCAGTGGCAATGATTGCTAC+TGG + chr7_2:70496463-70496482 Msa1073140:CDS 45.0%
CAACTGGACAATTGTTGGTG+TGG - chr7_2:70496510-70496529 None:intergenic 45.0%
CACACCAACAATTGTCCAGT+TGG + chr7_2:70496508-70496527 Msa1073140:CDS 45.0%
AATCAGGAGCCACATACCAA+CGG + chr7_2:70497147-70497166 Msa1073140:CDS 45.0%
! TGTTTTACTAGCAGACCCAG+AGG + chr7_2:70497185-70497204 Msa1073140:CDS 45.0%
!!! ACCCCATGTTCTAGCTTTTG+TGG - chr7_2:70497431-70497450 None:intergenic 45.0%
! AATCTGAAGCATGACTTGGG+TGG + chr7_2:70497537-70497556 Msa1073140:intron 45.0%
! TGACTTGGGTGGTTCGAAAA+TGG + chr7_2:70497548-70497567 Msa1073140:intron 45.0%
! TGGCATTACGGGTTTGAGTT+AGG - chr7_2:70497640-70497659 None:intergenic 45.0%
ACCCGTAATGCCAACTTGTA+AGG + chr7_2:70497647-70497666 Msa1073140:intron 45.0%
ATGCCAACTTGTAAGGTGTG+AGG + chr7_2:70497654-70497673 Msa1073140:intron 45.0%
!! GCTTTGAGAGAGAGCAATCT+AGG - chr7_2:70498121-70498140 None:intergenic 45.0%
AGATTGCTCTCTCTCAAAGC+TGG + chr7_2:70498121-70498140 Msa1073140:intron 45.0%
GCAAAGAAATACGGTGACAC+TGG + chr7_2:70498378-70498397 Msa1073140:CDS 45.0%
! TCCAGATTTACAGGAAGTGC+TGG + chr7_2:70498508-70498527 Msa1073140:intron 45.0%
!! CCAGATTTACAGGAAGTGCT+GGG + chr7_2:70498509-70498528 Msa1073140:intron 45.0%
GAATATTCGCCTTGTAGGAG+AGG + chr7_2:70498564-70498583 Msa1073140:CDS 45.0%
GTCACTCCAGTTGACAAGAT+AGG + chr7_2:70499260-70499279 Msa1073140:CDS 45.0%
CAAGATAGGGTTTCAACCTG+AGG + chr7_2:70499274-70499293 Msa1073140:CDS 45.0%
GTCTTTGTTAGAGGGAAAGC+TGG + chr7_2:70499347-70499366 Msa1073140:CDS 45.0%
CTTTGTTAGAGGGAAAGCTG+GGG + chr7_2:70499349-70499368 Msa1073140:CDS 45.0%
! TGTCAGAAACTCACTTGCTG+AGG + chr7_2:70499382-70499401 Msa1073140:CDS 45.0%
TTGCTGAGGCTGTAGTTGAA+GGG + chr7_2:70499396-70499415 Msa1073140:CDS 45.0%
TGTTGTGAGTACATGACTGG+TGG + chr7_2:70499431-70499450 Msa1073140:CDS 45.0%
CGTTTCTACCCACACTGTTA+AGG - chr7_2:70499592-70499611 None:intergenic 45.0%
! GTTGGCTTACATTCTTGACG+AGG + chr7_2:70499634-70499653 Msa1073140:CDS 45.0%
!! GGTTCTGGGGTATATACCTT+GGG - chr7_2:70499674-70499693 None:intergenic 45.0%
CAAAGGTGAGGCTATTCTGA+AGG + chr7_2:70500057-70500076 Msa1073140:CDS 45.0%
! TGAGGCTATTCTGAAGGACT+GGG + chr7_2:70500063-70500082 Msa1073140:CDS 45.0%
! ATACTTGGCATTAGCCTCAG+GGG - chr7_2:70500140-70500159 None:intergenic 45.0%
! CATACTTGGCATTAGCCTCA+GGG - chr7_2:70500141-70500160 None:intergenic 45.0%
! TCATACTTGGCATTAGCCTC+AGG - chr7_2:70500142-70500161 None:intergenic 45.0%
! GTCACTTTGCAGTCTGCTTA+GGG + chr7_2:70500181-70500200 Msa1073140:CDS 45.0%
ACTTCCCATTAAAACACCGC+TGG + chr7_2:70500330-70500349 Msa1073140:three_prime_UTR 45.0%
CTTCCCATTAAAACACCGCT+GGG + chr7_2:70500331-70500350 Msa1073140:three_prime_UTR 45.0%
!!! AAGCCCAGCGGTGTTTTAAT+GGG - chr7_2:70500337-70500356 None:intergenic 45.0%
TGAGATTGAATGAAGCCCAG+CGG - chr7_2:70500349-70500368 None:intergenic 45.0%
GGCCTCTTACATCTGCAAAA+TGG - chr7_2:70500384-70500403 None:intergenic 45.0%
CTTAACAGGGATGTACAAGG+AGG - chr7_2:70500406-70500425 None:intergenic 45.0%
!! AAAAATAGTTATATTTATTT+CGG - chr7_2:70496824-70496843 None:intergenic 5.0%
ACAAGATCACCAGGAACACC+AGG - chr7_2:70496652-70496671 None:intergenic 50.0%
CCTCAGCTACGTACAAGAAG+AGG - chr7_2:70496678-70496697 None:intergenic 50.0%
CCTCTTCTTGTACGTAGCTG+AGG + chr7_2:70496675-70496694 Msa1073140:CDS 50.0%
CTTCTTGTACGTAGCTGAGG+AGG + chr7_2:70496678-70496697 Msa1073140:CDS 50.0%
!! TGACCAGGTAAGAGGCACTT+TGG + chr7_2:70496865-70496884 Msa1073140:intron 50.0%
!! AAGAGGCACTTTGGCACAGT+TGG + chr7_2:70496874-70496893 Msa1073140:CDS 50.0%
!! AGAGGCACTTTGGCACAGTT+GGG + chr7_2:70496875-70496894 Msa1073140:CDS 50.0%
TTCTAGTCCTAGGCGTGAAG+AGG - chr7_2:70497518-70497537 None:intergenic 50.0%
AGAGCCTAACCCAATGTGTC+GGG - chr7_2:70497589-70497608 None:intergenic 50.0%
CAGAGCCTAACCCAATGTGT+CGG - chr7_2:70497590-70497609 None:intergenic 50.0%
AACGTTGATCGTTCTGCCTG+TGG + chr7_2:70498336-70498355 Msa1073140:CDS 50.0%
ACGTTGATCGTTCTGCCTGT+GGG + chr7_2:70498337-70498356 Msa1073140:CDS 50.0%
!!! TACGGTGACACTGGTTTTGC+TGG + chr7_2:70498387-70498406 Msa1073140:CDS 50.0%
TTCCTGTAAATCTGGACGCG+TGG - chr7_2:70498504-70498523 None:intergenic 50.0%
CCCAGCACTTCCTGTAAATC+TGG - chr7_2:70498512-70498531 None:intergenic 50.0%
!! GAAGTGCTGGGCAGTCATTT+GGG + chr7_2:70498521-70498540 Msa1073140:CDS 50.0%
TTTGGGTGCTTTCTGACACC+AGG + chr7_2:70498538-70498557 Msa1073140:CDS 50.0%
ACCTGAGGATGCAGCTATTG+TGG + chr7_2:70499289-70499308 Msa1073140:CDS 50.0%
CCTGAGGATGCAGCTATTGT+GGG + chr7_2:70499290-70499309 Msa1073140:CDS 50.0%
CTGAGGATGCAGCTATTGTG+GGG + chr7_2:70499291-70499310 Msa1073140:CDS 50.0%
GTGGGGAACACTTGCTTGTA+CGG + chr7_2:70499308-70499327 Msa1073140:CDS 50.0%
TGGGGAACACTTGCTTGTAC+GGG + chr7_2:70499309-70499328 Msa1073140:CDS 50.0%
GAGGGCAGGTCTTTGTTAGA+GGG + chr7_2:70499339-70499358 Msa1073140:CDS 50.0%
TTAGAGGGAAAGCTGGGGAA+AGG + chr7_2:70499354-70499373 Msa1073140:CDS 50.0%
CTTGCTGAGGCTGTAGTTGA+AGG + chr7_2:70499395-70499414 Msa1073140:CDS 50.0%
TGCTGAGGCTGTAGTTGAAG+GGG + chr7_2:70499397-70499416 Msa1073140:CDS 50.0%
AAGCGAAGAAAGAGGGGTTG+AGG - chr7_2:70499514-70499533 None:intergenic 50.0%
AACGTAGCTGCTGGAATGAC+AGG + chr7_2:70499608-70499627 Msa1073140:CDS 50.0%
TAGCTGCTGGAATGACAGGA+GGG + chr7_2:70499612-70499631 Msa1073140:CDS 50.0%
GGACAACACTCTCATTCCCA+AGG + chr7_2:70499655-70499674 Msa1073140:CDS 50.0%
!! GGGTTCTGGGGTATATACCT+TGG - chr7_2:70499675-70499694 None:intergenic 50.0%
AGCGAGTAACAGCACCTGTA+GGG + chr7_2:70499842-70499861 Msa1073140:CDS 50.0%
TTTAGCTGGATCTGCCCTAC+AGG - chr7_2:70499859-70499878 None:intergenic 50.0%
AACGGGTAGCAACAAAGGTG+AGG + chr7_2:70500045-70500064 Msa1073140:CDS 50.0%
! GTGAGGCTATTCTGAAGGAC+TGG + chr7_2:70500062-70500081 Msa1073140:CDS 50.0%
!! TCAGGGGTGTCTTCTTCACT+AGG - chr7_2:70500124-70500143 None:intergenic 50.0%
TAGTGAAGAAGACACCCCTG+AGG + chr7_2:70500123-70500142 Msa1073140:CDS 50.0%
TGACATAACTGCAACGGAGC+AGG + chr7_2:70500159-70500178 Msa1073140:CDS 50.0%
! GGTCACTTTGCAGTCTGCTT+AGG + chr7_2:70500180-70500199 Msa1073140:CDS 50.0%
TTGATTGCGCCAGGCTATGA+AGG + chr7_2:70500221-70500240 Msa1073140:three_prime_UTR 50.0%
TGATTGCGCCAGGCTATGAA+GGG + chr7_2:70500222-70500241 Msa1073140:three_prime_UTR 50.0%
ATGTGGTTCCCTTCATAGCC+TGG - chr7_2:70500233-70500252 None:intergenic 50.0%
!! GAAGCCCAGCGGTGTTTTAA+TGG - chr7_2:70500338-70500357 None:intergenic 50.0%
!! TCCAGTTGGTGTTGCCAGTC+AGG + chr7_2:70496522-70496541 Msa1073140:CDS 55.0%
ACCTGACTGGCAACACCAAC+TGG - chr7_2:70496526-70496545 None:intergenic 55.0%
! GAGTTGCGTGCACGTTTTCC+TGG + chr7_2:70496631-70496650 Msa1073140:CDS 55.0%
! GCACGTTTTCCTGGTGTTCC+TGG + chr7_2:70496640-70496659 Msa1073140:CDS 55.0%
! GTGCCAAAGTGCCTCTTACC+TGG - chr7_2:70496871-70496890 None:intergenic 55.0%
! GAGGCACTTTGGCACAGTTG+GGG + chr7_2:70496876-70496895 Msa1073140:CDS 55.0%
AGGACAGGACCGTTGGTATG+TGG - chr7_2:70497159-70497178 None:intergenic 55.0%
ACATACCAACGGTCCTGTCC+TGG + chr7_2:70497158-70497177 Msa1073140:CDS 55.0%
ATCATCCAGGACAGGACCGT+TGG - chr7_2:70497166-70497185 None:intergenic 55.0%
CTCATCACCTCTTCACGCCT+AGG + chr7_2:70497508-70497527 Msa1073140:intron 55.0%
TAGCATGTGGCCCGACACAT+TGG + chr7_2:70497576-70497595 Msa1073140:intron 55.0%
AGCATGTGGCCCGACACATT+GGG + chr7_2:70497577-70497596 Msa1073140:intron 55.0%
AACACCAGCTATACGCCCAC+AGG - chr7_2:70498355-70498374 None:intergenic 55.0%
CACCACGCGTCCAGATTTAC+AGG + chr7_2:70498499-70498518 Msa1073140:intron 55.0%
!! GGAAGTGCTGGGCAGTCATT+TGG + chr7_2:70498520-70498539 Msa1073140:CDS 55.0%
!! GACTGTTGTCAGGGCATTGC+TGG + chr7_2:70499224-70499243 Msa1073140:intron 55.0%
!! TGTTGTCAGGGCATTGCTGG+AGG + chr7_2:70499227-70499246 Msa1073140:intron 55.0%
! GGGCATTGCTGGAGGTGAAT+TGG + chr7_2:70499235-70499254 Msa1073140:intron 55.0%
CCCACAATAGCTGCATCCTC+AGG - chr7_2:70499293-70499312 None:intergenic 55.0%
GGGGAACACTTGCTTGTACG+GGG + chr7_2:70499310-70499329 Msa1073140:CDS 55.0%
AACAAAGACCTGCCCTCCTG+TGG - chr7_2:70499336-70499355 None:intergenic 55.0%
GGAGGGCAGGTCTTTGTTAG+AGG + chr7_2:70499338-70499357 Msa1073140:CDS 55.0%
GTACATGACTGGTGGCTGTG+TGG + chr7_2:70499439-70499458 Msa1073140:CDS 55.0%
TGGTGGCTGTGTGGTTATCC+TGG + chr7_2:70499448-70499467 Msa1073140:CDS 55.0%
GGTGGCTGTGTGGTTATCCT+GGG + chr7_2:70499449-70499468 Msa1073140:CDS 55.0%
AGGGGTTGAGGATGAGCATG+AGG - chr7_2:70499502-70499521 None:intergenic 55.0%
GTGGGTAGAAACGTAGCTGC+TGG + chr7_2:70499599-70499618 Msa1073140:CDS 55.0%
GTAGCTGCTGGAATGACAGG+AGG + chr7_2:70499611-70499630 Msa1073140:CDS 55.0%
TGCTGGAATGACAGGAGGGT+TGG + chr7_2:70499616-70499635 Msa1073140:CDS 55.0%
CAGCGAGTAACAGCACCTGT+AGG + chr7_2:70499841-70499860 Msa1073140:CDS 55.0%
! GGGGTGTCTTCTTCACTAGG+TGG - chr7_2:70500121-70500140 None:intergenic 55.0%
GTGGCCCGACACATTGGGTT+AGG + chr7_2:70497582-70497601 Msa1073140:intron 60.0%
TCTGCCTGTGGGCGTATAGC+TGG + chr7_2:70498348-70498367 Msa1073140:CDS 60.0%
ACTTGCTTGTACGGGGCCAC+AGG + chr7_2:70499317-70499336 Msa1073140:CDS 60.0%
GAGGCTGTAGTTGAAGGGGC+AGG + chr7_2:70499401-70499420 Msa1073140:CDS 60.0%
TGCTTGTACGGGGCCACAGG+AGG + chr7_2:70499320-70499339 Msa1073140:CDS 65.0%
GCTTGTACGGGGCCACAGGA+GGG + chr7_2:70499321-70499340 Msa1073140:CDS 65.0%
GTACGGGGCCACAGGAGGGC+AGG + chr7_2:70499325-70499344 Msa1073140:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70496352 70500868 70496352 ID=Msa1073140;Name=Msa1073140
chr7_2 mRNA 70496352 70500868 70496352 ID=Msa1073140-mRNA-1;Parent=Msa1073140;Name=Msa1073140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=69|1|1|1|1|1|10|667|408
chr7_2 exon 70496352 70496543 70496352 ID=Msa1073140-mRNA-1:exon:15899;Parent=Msa1073140-mRNA-1
chr7_2 exon 70496625 70496699 70496625 ID=Msa1073140-mRNA-1:exon:15900;Parent=Msa1073140-mRNA-1
chr7_2 exon 70496872 70497000 70496872 ID=Msa1073140-mRNA-1:exon:15901;Parent=Msa1073140-mRNA-1
chr7_2 exon 70497108 70497206 70497108 ID=Msa1073140-mRNA-1:exon:15902;Parent=Msa1073140-mRNA-1
chr7_2 exon 70498282 70498424 70498282 ID=Msa1073140-mRNA-1:exon:15903;Parent=Msa1073140-mRNA-1
chr7_2 exon 70498513 70498606 70498513 ID=Msa1073140-mRNA-1:exon:15904;Parent=Msa1073140-mRNA-1
chr7_2 exon 70499236 70499474 70499236 ID=Msa1073140-mRNA-1:exon:15905;Parent=Msa1073140-mRNA-1
chr7_2 exon 70499598 70499676 70499598 ID=Msa1073140-mRNA-1:exon:15906;Parent=Msa1073140-mRNA-1
chr7_2 exon 70499817 70499900 70499817 ID=Msa1073140-mRNA-1:exon:15907;Parent=Msa1073140-mRNA-1
chr7_2 exon 70500040 70500868 70500040 ID=Msa1073140-mRNA-1:exon:15908;Parent=Msa1073140-mRNA-1
chr7_2 five_prime_UTR 70496352 70496420 70496352 ID=Msa1073140-mRNA-1:five_prime_utr;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70496421 70496543 70496421 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70496625 70496699 70496625 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70496872 70497000 70496872 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70497108 70497206 70497108 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70498282 70498424 70498282 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70498513 70498606 70498513 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70499236 70499474 70499236 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70499598 70499676 70499598 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70499817 70499900 70499817 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 CDS 70500040 70500201 70500040 ID=Msa1073140-mRNA-1:cds;Parent=Msa1073140-mRNA-1
chr7_2 three_prime_UTR 70500202 70500868 70500202 ID=Msa1073140-mRNA-1:three_prime_utr;Parent=Msa1073140-mRNA-1
Gene Sequence

>Msa1073140

ATGATGGCAGCAATAATGGGTGCTGATGAATATGGGTTTGGTTCAGTGGCAATGATTGCTACTGGATGTGTTATGGCTCGCATTTGCCACACCAACAATTGTCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGTTTTCCTGGTGTTCCTGGTGATCTTGTTAACCTCTTCTTGTACGTAGCTGAGGAGGTAAGAGGCACTTTGGCACAGTTGGGGTATGAGAAGTTAGATGATATAATTGGCCGAACAGAATTATTGAGACCAAGAGACGTATCTCTTGTGAAAACTCAGCATCTAGATCTGAGCTATATCCTCTCTAATGTTGGGTTACCTAAATTGAGCAGTACAGAAATCAGGAATCAGGAGCCACATACCAACGGTCCTGTCCTGGATGATGTTTTACTAGCAGACCCAGAGATTGCAGATGCCATTGAAAATGAAAAAGCTGTTAGCAAGACCATAAAGATATACAACGTTGATCGTTCTGCCTGTGGGCGTATAGCTGGTGTTATTGCAAAGAAATACGGTGACACTGGTTTTGCTGGACAGTTGAATATTACATTTACAGGAAGTGCTGGGCAGTCATTTGGGTGCTTTCTGACACCAGGAATGAATATTCGCCTTGTAGGAGAGGCAAATGATTATGTTGGGAAGGGCATTGCTGGAGGTGAATTGGTTGTCACTCCAGTTGACAAGATAGGGTTTCAACCTGAGGATGCAGCTATTGTGGGGAACACTTGCTTGTACGGGGCCACAGGAGGGCAGGTCTTTGTTAGAGGGAAAGCTGGGGAAAGGTTTGCTGTCAGAAACTCACTTGCTGAGGCTGTAGTTGAAGGGGCAGGAGATCATTGTTGTGAGTACATGACTGGTGGCTGTGTGGTTATCCTGGGAAATGTGGGTAGAAACGTAGCTGCTGGAATGACAGGAGGGTTGGCTTACATTCTTGACGAGGACAACACTCTCATTCCCAAGATAAACAGAGAAATTGTTAAAATTCAGCGAGTAACAGCACCTGTAGGGCAGATCCAGCTAAAGAAACTAATTGAAGCCCATGTTGAAAAAACGGGTAGCAACAAAGGTGAGGCTATTCTGAAGGACTGGGACAAGTATTTATCACTGTTTTGGCAGTTGGTTCCACCTAGTGAAGAAGACACCCCTGAGGCTAATGCCAAGTATGACATAACTGCAACGGAGCAGGTCACTTTGCAGTCTGCTTAG

Protein sequence

>Msa1073140

MMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNLFLYVAEEVRGTLAQLGYEKLDDIIGRTELLRPRDVSLVKTQHLDLSYILSNVGLPKLSSTEIRNQEPHTNGPVLDDVLLADPEIADAIENEKAVSKTIKIYNVDRSACGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFGCFLTPGMNIRLVGEANDYVGKGIAGGELVVTPVDKIGFQPEDAAIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAEAVVEGAGDHCCEYMTGGCVVILGNVGRNVAAGMTGGLAYILDEDNTLIPKINREIVKIQRVTAPVGQIQLKKLIEAHVEKTGSNKGEAILKDWDKYLSLFWQLVPPSEEDTPEANAKYDITATEQVTLQSA*