AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129660 MtrunA17_Chr1g0190291 68.954 612 143 7 11 603 1 584 0.0 854
Msa1129660 MtrunA17_Chr7g0274501 93.293 328 15 2 11 338 1 321 0.0 629
Msa1129660 MtrunA17_Chr7g0274511 90.977 266 2 1 338 603 4 247 2.76e-177 501
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129660 AT5G28910.2 58.603 587 189 8 18 603 2 535 0.0 686
Msa1129660 AT5G28960.1 55.877 587 206 7 18 603 2 536 0.0 648
Msa1129660 AT5G28910.1 66.832 404 107 4 200 603 32 408 0.0 574

Find 134 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTATTGTTTCTTTGATTT+TGG 0.061596 7_3:+81628334 Msa1129660:CDS
TTCTATTTCTTTAGGTTTAA+AGG 0.141301 7_3:-81629572 None:intergenic
GTAGTAGACCTTTGATTTAA+TGG 0.224978 7_3:-81628221 None:intergenic
GTTAATCTTTCTATTTCTTT+AGG 0.231940 7_3:-81629580 None:intergenic
ATTATACGTCGAAGCATATA+TGG 0.264313 7_3:+81630788 Msa1129660:CDS
ACTTGGTGCTTCCTTATAGA+TGG 0.275894 7_3:+81632513 Msa1129660:CDS
ACCAAATGTTATTGAGGTTT+GGG 0.282915 7_3:-81632190 None:intergenic
ACATTATCTATCACTCTATT+AGG 0.287865 7_3:+81632609 Msa1129660:three_prime_UTR
AACCAAATGTTATTGAGGTT+TGG 0.296113 7_3:-81632191 None:intergenic
CTGAGAGAAGTAAGTGCTTA+TGG 0.301437 7_3:+81629692 Msa1129660:CDS
ATCTCTCCCAGTCAGCTAAA+AGG 0.322499 7_3:-81630421 None:intergenic
TGGGACCCAGGGCTTGTGAT+TGG 0.323573 7_3:-81632060 None:intergenic
TTGTCACTAACTTCTACAAT+AGG 0.327883 7_3:+81630522 Msa1129660:CDS
TATTTCTCATTCCATCTATA+AGG 0.328056 7_3:-81632524 None:intergenic
CTTGCCTAATGCTCCACATT+TGG 0.333008 7_3:+81629738 Msa1129660:CDS
GGCATTGGAGCTCAAATTGC+TGG 0.341476 7_3:+81630455 Msa1129660:CDS
TGTCTTACACAAAGTGCTTA+TGG 0.342584 7_3:+81627765 Msa1129660:five_prime_UTR
AAACCAAAGAGTATTCTTCT+AGG 0.346609 7_3:+81632331 Msa1129660:CDS
CACAAGACTTCCGTTTATAT+CGG 0.347880 7_3:-81630983 None:intergenic
TGGGAGAGATTACCTGGATT+TGG 0.353736 7_3:+81630434 Msa1129660:CDS
CCACCTAGAAGAATACTCTT+TGG 0.354022 7_3:-81632334 None:intergenic
TGCAGCTTGCTGATAGAATT+AGG 0.358510 7_3:+81632159 Msa1129660:CDS
CAAAGGTAAGAAGGCAAGAT+AGG 0.362541 7_3:+81632370 Msa1129660:CDS
GCGTCAACAAGGACAGATTT+TGG 0.366429 7_3:+81632577 Msa1129660:CDS
TCCCAAACCTCAATAACATT+TGG 0.374339 7_3:+81632189 Msa1129660:CDS
TTCGGGTCGCTACAGTTTGA+TGG 0.388599 7_3:-81630389 None:intergenic
CTCTTCTAAGCATGCATGTA+AGG 0.389151 7_3:+81632087 Msa1129660:CDS
GAGGAGCGCCATGCTGCCTT+TGG 0.390042 7_3:+81631298 Msa1129660:CDS
ATATATATTGACATGAATAT+AGG 0.401990 7_3:-81628122 None:intergenic
TTGGCTATTCTTGGTAACTT+TGG 0.403485 7_3:+81628353 Msa1129660:CDS
ATAGATGGAATGAGAAATAC+TGG 0.404491 7_3:+81632528 Msa1129660:CDS
GGCTGAGTATGAAGCTAGCC+TGG 0.415295 7_3:+81632407 Msa1129660:CDS
TATCTTTGCTTTACTCAGCT+TGG 0.415647 7_3:+81629644 Msa1129660:CDS
GAAAAGTTCAACGCGACATA+TGG 0.418048 7_3:+81630354 Msa1129660:CDS
CTTCCGTTTATATCGGTTGT+TGG 0.424746 7_3:-81630976 None:intergenic
CTTGCTATTGCAATCAATGA+AGG 0.433637 7_3:+81630491 Msa1129660:CDS
AATTTATCAATATCAGACTT+TGG 0.436340 7_3:-81632029 None:intergenic
TGCATGCTTAGAAGAGGTCT+TGG 0.446515 7_3:-81632080 None:intergenic
TGAGAGAGTGGTTTCTCAAA+GGG 0.446705 7_3:+81628250 Msa1129660:CDS
TCCAACGTGCGACATTTAGC+TGG 0.446728 7_3:+81631573 Msa1129660:CDS
TAAAGAAAAGGAGAGTGAAA+TGG 0.447951 7_3:+81628196 Msa1129660:CDS
TTCATTATACAAAGGTAAGA+AGG 0.458461 7_3:+81632361 Msa1129660:CDS
GCTAAAAGGAACTTGACATT+CGG 0.460601 7_3:-81630407 None:intergenic
CTGATATTGATAAATTTGTA+TGG 0.463456 7_3:+81632036 Msa1129660:CDS
TAGTGCTTCTCTCCCTTCCC+AGG 0.463552 7_3:-81632425 None:intergenic
AAGAGATTAATCAAGATGAA+AGG 0.465185 7_3:+81629620 Msa1129660:CDS
TATGGTCCAATCACAAGCCC+TGG 0.466147 7_3:+81632054 Msa1129660:CDS
AACCGTCTCGACACACGTAT+AGG 0.466328 7_3:+81629790 Msa1129660:CDS
TAGACAACCAAATGTTATTG+AGG 0.467328 7_3:-81632196 None:intergenic
CATGTTCATGCATAAAGAAA+AGG 0.467559 7_3:+81628184 Msa1129660:exon
AGTAGCAATTCCAGCTAGAT+CGG 0.470188 7_3:-81630669 None:intergenic
GCTGACTGGGAGAGATTACC+TGG 0.471329 7_3:+81630428 Msa1129660:CDS
CTAAAAGGAACTTGACATTC+GGG 0.474877 7_3:-81630406 None:intergenic
AGATTACCTGGATTTGGCAT+TGG 0.484786 7_3:+81630440 Msa1129660:CDS
AGGCTGTACGTTACTTAATG+AGG 0.485431 7_3:+81631242 Msa1129660:intron
TCTAAGCATGCATGTAAGGA+TGG 0.488615 7_3:+81632091 Msa1129660:CDS
ATGGCCCACAAGTTTCTTTG+AGG 0.489548 7_3:+81628090 Msa1129660:five_prime_UTR
CAACCAACAACCGATATAAA+CGG 0.491670 7_3:+81630973 Msa1129660:CDS
GCCACCTCAAAGAAACTTGT+GGG 0.493147 7_3:-81628094 None:intergenic
TGTCACTAACTTCTACAATA+GGG 0.493395 7_3:+81630523 Msa1129660:CDS
ACTGGTGGAAAGGTCATGTC+TGG 0.496474 7_3:+81632546 Msa1129660:CDS
CAGGGCTGTCCCGATCTAGC+TGG 0.497278 7_3:+81630659 Msa1129660:intron
AGAGATTAATCAAGATGAAA+GGG 0.498406 7_3:+81629621 Msa1129660:CDS
GTGAAAGCTTGCCTAGGAGT+TGG 0.499983 7_3:-81630817 None:intergenic
TCGACGGTGGTGGCGAGCAC+AGG 0.504855 7_3:+81631026 Msa1129660:CDS
AGTAAGTGCTTATGGAAACT+TGG 0.512305 7_3:+81629700 Msa1129660:CDS
CAATGTATGATGCAGGATAT+GGG 0.512609 7_3:+81630930 Msa1129660:intron
GCCCACAAGTTTCTTTGAGG+TGG 0.514528 7_3:+81628093 Msa1129660:five_prime_UTR
TACTACTCCTCTTGAGAGAG+TGG 0.522344 7_3:+81628238 Msa1129660:CDS
CCTTTCCACCATGGACAAGT+AGG 0.522455 7_3:+81629821 Msa1129660:CDS
ATTGAGGATGCATTGAGTAA+AGG 0.523240 7_3:+81630745 Msa1129660:CDS
TAGAAGAGGTCTTGGGACCC+AGG 0.525104 7_3:-81632072 None:intergenic
TTGGAGCTTTGGGTTCAACT+TGG 0.526444 7_3:+81632496 Msa1129660:CDS
AGATAGGAGTAATGTTTCAA+TGG 0.527576 7_3:+81632386 Msa1129660:CDS
TTCCTATACGTGTGTCGAGA+CGG 0.527916 7_3:-81629792 None:intergenic
TTGAGAGAGTGGTTTCTCAA+AGG 0.528985 7_3:+81628249 Msa1129660:CDS
AAGTTGCATGTGTATTCAGT+CGG 0.532185 7_3:-81631268 None:intergenic
TTATACGTCGAAGCATATAT+GGG 0.535262 7_3:+81630789 Msa1129660:CDS
CCTACTTGTCCATGGTGGAA+AGG 0.537449 7_3:-81629821 None:intergenic
GGAAAATAACTTACTGATGG+TGG 0.537841 7_3:-81628435 None:intergenic
GGCTGATCATGATGGCTGCA+AGG 0.539239 7_3:+81630544 Msa1129660:CDS
TTGGTTGTCTACAGAGATGC+AGG 0.539391 7_3:+81632208 Msa1129660:CDS
GTAGCAATTCCAGCTAGATC+GGG 0.539518 7_3:-81630668 None:intergenic
TATGGGCAGGACCAACTCCT+AGG 0.541882 7_3:+81630806 Msa1129660:CDS
AGTTGCATGTGTATTCAGTC+GGG 0.544098 7_3:-81631267 None:intergenic
AGAATGTCGCCAACGTGCGT+TGG 0.549164 7_3:+81630711 Msa1129660:CDS
GCTGATCATGATGGCTGCAA+GGG 0.549566 7_3:+81630545 Msa1129660:CDS
TACAATAGGGCTGATCATGA+TGG 0.551411 7_3:+81630536 Msa1129660:CDS
GCATGCTTAGAAGAGGTCTT+GGG 0.551947 7_3:-81632079 None:intergenic
CACATGCAACTTATTGAATG+AGG 0.554044 7_3:+81631279 Msa1129660:CDS
GCCATAAGAAAATTAACAAG+TGG 0.555432 7_3:-81632453 None:intergenic
ACGTCGAAGCATATATGGGC+AGG 0.555903 7_3:+81630793 Msa1129660:CDS
TGCCACCTCAAAGAAACTTG+TGG 0.556895 7_3:-81628095 None:intergenic
AAATGGAGCCATTAAATCAA+AGG 0.561729 7_3:+81628213 Msa1129660:CDS
TGAGCTCCAATGCCAAATCC+AGG 0.562206 7_3:-81630446 None:intergenic
ATGTGGAGCATTAGGCAAGT+TGG 0.563992 7_3:-81629734 None:intergenic
AATCCTTTCCTACTTGTCCA+TGG 0.564954 7_3:-81629829 None:intergenic
AGTATGAAGCTAGCCTGGGA+AGG 0.565186 7_3:+81632412 Msa1129660:CDS
CGATATAAACGGAAGTCTTG+TGG 0.565369 7_3:+81630984 Msa1129660:CDS
GCAGGATATGGGGCGATCCG+TGG 0.570632 7_3:+81630941 Msa1129660:intron
GTTGGTTGCAAATAATTCCA+CGG 0.574159 7_3:-81630958 None:intergenic
GCTCAAATTGCTGGAATGTG+TGG 0.578209 7_3:+81630464 Msa1129660:CDS
CTAAGCATGCATGTAAGGAT+GGG 0.579310 7_3:+81632092 Msa1129660:CDS
AATGAGAAATACTGGTGGAA+AGG 0.580618 7_3:+81632536 Msa1129660:CDS
CTGAGGGTAATCATCCACCC+TGG 0.583025 7_3:+81629878 Msa1129660:CDS
AGAAGAGGTCTTGGGACCCA+GGG 0.585539 7_3:-81632071 None:intergenic
GAGATGCCTCAGGAGGAGAA+TGG 0.586610 7_3:+81631999 Msa1129660:intron
TGAGAAACCACTCTCTCAAG+AGG 0.586656 7_3:-81628245 None:intergenic
GTATGAAGCTAGCCTGGGAA+GGG 0.593330 7_3:+81632413 Msa1129660:CDS
CTTACATGCATGCTTAGAAG+AGG 0.593796 7_3:-81632086 None:intergenic
GCTGAGTATGAAGCTAGCCT+GGG 0.604368 7_3:+81632408 Msa1129660:CDS
CCACCATGGACAAGTAGGAA+AGG 0.607649 7_3:+81629826 Msa1129660:CDS
TACCCTCAGATACAGCAAGA+GGG 0.609496 7_3:-81629864 None:intergenic
TGAGGGTAATCATCCACCCT+GGG 0.609901 7_3:+81629879 Msa1129660:CDS
ATGGTCCAATCACAAGCCCT+GGG 0.610228 7_3:+81632055 Msa1129660:CDS
GTGGAACTTTCATTATACAA+AGG 0.616580 7_3:+81632353 Msa1129660:CDS
GAAATGATTCCTTTCCACCA+TGG 0.616729 7_3:+81629812 Msa1129660:CDS
CCTTTCCTACTTGTCCATGG+TGG 0.617827 7_3:-81629826 None:intergenic
CCAAAGAGTATTCTTCTAGG+TGG 0.628449 7_3:+81632334 Msa1129660:CDS
TGGCTACTTGAGCGTCAACA+AGG 0.630833 7_3:+81632566 Msa1129660:CDS
TCCAGCTAAATGTCGCACGT+TGG 0.638382 7_3:-81631574 None:intergenic
ACCCTCAGATACAGCAAGAG+GGG 0.639224 7_3:-81629863 None:intergenic
GTTGGAACTCGTGAAAATTG+AGG 0.646555 7_3:+81630729 Msa1129660:CDS
ATTTAGCTGGAGAAGCTAGA+CGG 0.647194 7_3:+81631586 Msa1129660:CDS
TAAAGCATGTGAAATGAGAG+TGG 0.647417 7_3:+81632118 Msa1129660:CDS
GCAACAGCACATATCTGACA+TGG 0.647774 7_3:-81628296 None:intergenic
CCCTCAGATACAGCAAGAGG+GGG 0.652389 7_3:-81629862 None:intergenic
TCTTATTGGAGAATGGCCAA+AGG 0.652636 7_3:+81631351 Msa1129660:CDS
ATTAAGAAACATACCCAGGG+TGG 0.662468 7_3:-81629892 None:intergenic
GATGGAATGAGAAATACTGG+TGG 0.667101 7_3:+81632531 Msa1129660:CDS
TTACCCTCAGATACAGCAAG+AGG 0.671672 7_3:-81629865 None:intergenic
AATGTATGATGCAGGATATG+GGG 0.675541 7_3:+81630931 Msa1129660:intron
TATTGTAGAAGTTAGTGACA+AGG 0.707557 7_3:-81630520 None:intergenic
TCACGAGTTCCAACGCACGT+TGG 0.722369 7_3:-81630720 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTACAATAATTTTTTTTTTT+AGG + chr7_3:81628849-81628868 Msa1129660:intron 10.0%
!!! AATAATTTTAAAAAAACAGT+AGG - chr7_3:81629148-81629167 None:intergenic 10.0%
!!! AATTTGTTATTTAGTAATTT+TGG + chr7_3:81630012-81630031 Msa1129660:intron 10.0%
!! ATATATATTGACATGAATAT+AGG - chr7_3:81628125-81628144 None:intergenic 15.0%
!! AAAACAAGAAAATCATAAAT+GGG - chr7_3:81628595-81628614 None:intergenic 15.0%
!!! GATTCATTTTTTTTTTTTGA+GGG - chr7_3:81628685-81628704 None:intergenic 15.0%
!!! GATTCATTTTTTTTTTTTGA+GGG - chr7_3:81628685-81628704 None:intergenic 15.0%
!!! ATTAATTTTAGAAAAACAGT+AGG - chr7_3:81628744-81628763 None:intergenic 15.0%
!!! ACTATCAATAAGTAATTTTT+TGG - chr7_3:81628767-81628786 None:intergenic 15.0%
!! AAAAGAAGAAAATAATAAAG+GGG - chr7_3:81629106-81629125 None:intergenic 15.0%
!! CAAAAGAAGAAAATAATAAA+GGG - chr7_3:81629107-81629126 None:intergenic 15.0%
!! ACAAAAGAAGAAAATAATAA+AGG - chr7_3:81629108-81629127 None:intergenic 15.0%
!!! AGCATACTATAATTAATTTT+TGG + chr7_3:81629294-81629313 Msa1129660:intron 15.0%
!!! TTTGGATTTTGTATTTAATA+AGG + chr7_3:81630115-81630134 Msa1129660:intron 15.0%
!!! TCATTTTCTATAATCTAATA+AGG - chr7_3:81630276-81630295 None:intergenic 15.0%
!!! AAATATGATGAATTTTTTAC+TGG - chr7_3:81632745-81632764 None:intergenic 15.0%
!!! CAAGAATTCATTTTATTTAG+AGG + chr7_3:81627809-81627828 Msa1129660:five_prime_UTR 20.0%
!! CTAGTTATTAAGAGAAAATT+GGG + chr7_3:81628511-81628530 Msa1129660:intron 20.0%
!! CAAAACAAGAAAATCATAAA+TGG - chr7_3:81628596-81628615 None:intergenic 20.0%
!! CATATTATTGGATTAATGTT+AGG - chr7_3:81628644-81628663 None:intergenic 20.0%
!!! GGATTCATTTTTTTTTTTTG+AGG - chr7_3:81628686-81628705 None:intergenic 20.0%
!!! GGATTCATTTTTTTTTTTTG+AGG - chr7_3:81628686-81628705 None:intergenic 20.0%
!! TACAAGATAACATTACATTA+GGG + chr7_3:81629342-81629361 Msa1129660:intron 20.0%
!!! TTCTATTTCTTTAGGTTTAA+AGG - chr7_3:81629575-81629594 None:intergenic 20.0%
!!! GTTAATCTTTCTATTTCTTT+AGG - chr7_3:81629583-81629602 None:intergenic 20.0%
!! TGGATTAATAAACAGAAATA+AGG - chr7_3:81631056-81631075 None:intergenic 20.0%
!! ATATATATGTGTATTGGATA+CGG + chr7_3:81631694-81631713 Msa1129660:intron 20.0%
!! AATATCAAAGCATGTAAAAA+TGG - chr7_3:81631959-81631978 None:intergenic 20.0%
!! AATTTATCAATATCAGACTT+TGG - chr7_3:81632032-81632051 None:intergenic 20.0%
!! CTGATATTGATAAATTTGTA+TGG + chr7_3:81632036-81632055 Msa1129660:CDS 20.0%
! AATATACATAGAACGAGAAA+AGG - chr7_3:81628021-81628040 None:intergenic 25.0%
!!! TTGCATTTATTTTTTGCAGT+TGG + chr7_3:81628052-81628071 Msa1129660:five_prime_UTR 25.0%
!!! CTGTATTGTTTCTTTGATTT+TGG + chr7_3:81628334-81628353 Msa1129660:CDS 25.0%
! TAAGGAAAATAACTTACTGA+TGG - chr7_3:81628441-81628460 None:intergenic 25.0%
! GTAGTAAATGAAAGTGATTA+AGG - chr7_3:81628459-81628478 None:intergenic 25.0%
!! CCAATTTTCTCTTAATAACT+AGG - chr7_3:81628513-81628532 None:intergenic 25.0%
! CCTAGTTATTAAGAGAAAAT+TGG + chr7_3:81628510-81628529 Msa1129660:intron 25.0%
! AACAGTAGGATTCATATTAT+TGG - chr7_3:81628656-81628675 None:intergenic 25.0%
! GATATTTAATATGAGACACA+TGG + chr7_3:81628959-81628978 Msa1129660:intron 25.0%
! TTCTTCATATAGCAGTTAAA+AGG - chr7_3:81629040-81629059 None:intergenic 25.0%
! TGAAATACAGTTGAAACTTT+AGG + chr7_3:81629179-81629198 Msa1129660:intron 25.0%
! GAAATACAGTTGAAACTTTA+GGG + chr7_3:81629180-81629199 Msa1129660:intron 25.0%
!! CTTGATGAGTATGAAATTTT+AGG + chr7_3:81629223-81629242 Msa1129660:intron 25.0%
! CTACAAGATAACATTACATT+AGG + chr7_3:81629341-81629360 Msa1129660:intron 25.0%
! TACTATAAAAAGTTGGAAAG+TGG - chr7_3:81629453-81629472 None:intergenic 25.0%
! AAGAGATTAATCAAGATGAA+AGG + chr7_3:81629620-81629639 Msa1129660:CDS 25.0%
! AGAGATTAATCAAGATGAAA+GGG + chr7_3:81629621-81629640 Msa1129660:CDS 25.0%
!!! TCTAATGTCTTGTTTGTTTT+AGG + chr7_3:81630078-81630097 Msa1129660:intron 25.0%
! TAGGAAACTACTATCATATT+TGG + chr7_3:81630097-81630116 Msa1129660:intron 25.0%
! CATTACATAATAATGCACTT+AGG - chr7_3:81630152-81630171 None:intergenic 25.0%
!!! ACTGTGAAGTTTTGTTAAAA+TGG - chr7_3:81630607-81630626 None:intergenic 25.0%
! GACATAAGAATAAGAAGAAT+AGG - chr7_3:81630911-81630930 None:intergenic 25.0%
! TTAATCCATGATATCATTGA+TGG + chr7_3:81631068-81631087 Msa1129660:intron 25.0%
! AAAACATTGGTAGAATATGA+TGG - chr7_3:81631125-81631144 None:intergenic 25.0%
! CATCATTAAATCACTATTCA+TGG - chr7_3:81631202-81631221 None:intergenic 25.0%
!! TTGCCATAATTATCATTTTC+AGG + chr7_3:81631222-81631241 Msa1129660:intron 25.0%
!!! ATGGTTCTAAAAAGTCTTAT+TGG + chr7_3:81631337-81631356 Msa1129660:CDS 25.0%
!!! TAAAAAGTCTTATTGGAGAA+TGG + chr7_3:81631344-81631363 Msa1129660:CDS 25.0%
! ATACCAAATAGGAAAATTAG+TGG - chr7_3:81631385-81631404 None:intergenic 25.0%
! TTGTGCTTTACATCTATAAA+TGG + chr7_3:81631435-81631454 Msa1129660:intron 25.0%
! TAACACAAAGAAGAATAAGA+AGG - chr7_3:81632272-81632291 None:intergenic 25.0%
! TTCATTATACAAAGGTAAGA+AGG + chr7_3:81632361-81632380 Msa1129660:CDS 25.0%
!!! TCCACTTGTTAATTTTCTTA+TGG + chr7_3:81632452-81632471 Msa1129660:CDS 25.0%
!! TGTTAATTTTCTTATGGCTA+CGG + chr7_3:81632458-81632477 Msa1129660:CDS 25.0%
! TATTTCTCATTCCATCTATA+AGG - chr7_3:81632527-81632546 None:intergenic 25.0%
! ACATTATCTATCACTCTATT+AGG + chr7_3:81632609-81632628 Msa1129660:three_prime_UTR 25.0%
ACAAACAAAGAACAAGAAGA+AGG - chr7_3:81627864-81627883 None:intergenic 30.0%
GAAGGAAAGAAAGAAATTCA+CGG - chr7_3:81627925-81627944 None:intergenic 30.0%
TTCTTTCCTTCTTTCTTGTT+TGG + chr7_3:81627934-81627953 Msa1129660:intron 30.0%
TTTGCAGTTGGAAAAATCAT+AGG + chr7_3:81628064-81628083 Msa1129660:five_prime_UTR 30.0%
TTGCAGTTGGAAAAATCATA+GGG + chr7_3:81628065-81628084 Msa1129660:five_prime_UTR 30.0%
TTGGAAAAATCATAGGGATA+TGG + chr7_3:81628071-81628090 Msa1129660:five_prime_UTR 30.0%
! CTTTTCTTTATGCATGAACA+TGG - chr7_3:81628186-81628205 None:intergenic 30.0%
CATGTTCATGCATAAAGAAA+AGG + chr7_3:81628184-81628203 Msa1129660:exon 30.0%
TAAAGAAAAGGAGAGTGAAA+TGG + chr7_3:81628196-81628215 Msa1129660:CDS 30.0%
AAATGGAGCCATTAAATCAA+AGG + chr7_3:81628213-81628232 Msa1129660:CDS 30.0%
! GTAGTAGACCTTTGATTTAA+TGG - chr7_3:81628224-81628243 None:intergenic 30.0%
!!! TCTTTGATTTTGGCTATTCT+TGG + chr7_3:81628344-81628363 Msa1129660:CDS 30.0%
CTTAATAACTAGGCTAGAAA+CGG - chr7_3:81628503-81628522 None:intergenic 30.0%
ATTAATGTTAGGAAGACAGT+AGG - chr7_3:81628633-81628652 None:intergenic 30.0%
ACACGTGTACTATAAAAAGT+TGG - chr7_3:81629460-81629479 None:intergenic 30.0%
ATGATTAAGAAACATACCCA+GGG - chr7_3:81629898-81629917 None:intergenic 30.0%
AATGATTAAGAAACATACCC+AGG - chr7_3:81629899-81629918 None:intergenic 30.0%
TGGGTATGTTTCTTAATCAT+TGG + chr7_3:81629898-81629917 Msa1129660:intron 30.0%
TCTACTACATTATAGAGTCT+TGG + chr7_3:81629956-81629975 Msa1129660:intron 30.0%
ATTGTGTCAAAAATGCACTT+AGG - chr7_3:81630199-81630218 None:intergenic 30.0%
TATTGTAGAAGTTAGTGACA+AGG - chr7_3:81630523-81630542 None:intergenic 30.0%
TTGTCACTAACTTCTACAAT+AGG + chr7_3:81630522-81630541 Msa1129660:CDS 30.0%
TGTCACTAACTTCTACAATA+GGG + chr7_3:81630523-81630542 Msa1129660:CDS 30.0%
ATTATACGTCGAAGCATATA+TGG + chr7_3:81630788-81630807 Msa1129660:CDS 30.0%
TTATACGTCGAAGCATATAT+GGG + chr7_3:81630789-81630808 Msa1129660:CDS 30.0%
AGAAGAATAGGTTTATGTTC+AGG - chr7_3:81630899-81630918 None:intergenic 30.0%
! CTTTTCCATCAATGATATCA+TGG - chr7_3:81631076-81631095 None:intergenic 30.0%
TCTCTCATGAAACAAAACAT+TGG - chr7_3:81631138-81631157 None:intergenic 30.0%
CAGCCTGAAAATGATAATTA+TGG - chr7_3:81631228-81631247 None:intergenic 30.0%
! TCTCCACTAATTTTCCTATT+TGG + chr7_3:81631379-81631398 Msa1129660:intron 30.0%
! CTTAGTCTTCTATACCAAAT+AGG - chr7_3:81631396-81631415 None:intergenic 30.0%
ATTTGGTATAGAAGACTAAG+TGG + chr7_3:81631396-81631415 Msa1129660:intron 30.0%
! TTACTTATGTTTTGTGAGCT+TGG + chr7_3:81631486-81631505 Msa1129660:intron 30.0%
!! TAGAATCCAAGTTCACTTTT+TGG + chr7_3:81631614-81631633 Msa1129660:intron 30.0%
TCAAGTGCACAAACATAAAT+AGG - chr7_3:81631640-81631659 None:intergenic 30.0%
ACCAGCATATATATGTGTAT+TGG + chr7_3:81631688-81631707 Msa1129660:intron 30.0%
TCCAATACACATATATATGC+TGG - chr7_3:81631692-81631711 None:intergenic 30.0%
!! ATCATCTGGTCTTAATATGA+TGG - chr7_3:81631800-81631819 None:intergenic 30.0%
GCATTCTAACTTGGTATATT+GGG + chr7_3:81631821-81631840 Msa1129660:intron 30.0%
CACATTCTGACTTTATACTT+TGG - chr7_3:81631848-81631867 None:intergenic 30.0%
TAAAAATGGACCATAGGATT+TGG - chr7_3:81631945-81631964 None:intergenic 30.0%
ACCAAATGTTATTGAGGTTT+GGG - chr7_3:81632193-81632212 None:intergenic 30.0%
AACCAAATGTTATTGAGGTT+TGG - chr7_3:81632194-81632213 None:intergenic 30.0%
TAGACAACCAAATGTTATTG+AGG - chr7_3:81632199-81632218 None:intergenic 30.0%
TCATTGAGTTCATTTGATTC+AGG + chr7_3:81632296-81632315 Msa1129660:intron 30.0%
!! AAACCAAAGAGTATTCTTCT+AGG + chr7_3:81632331-81632350 Msa1129660:CDS 30.0%
GTGGAACTTTCATTATACAA+AGG + chr7_3:81632353-81632372 Msa1129660:CDS 30.0%
AGATAGGAGTAATGTTTCAA+TGG + chr7_3:81632386-81632405 Msa1129660:CDS 30.0%
GCCATAAGAAAATTAACAAG+TGG - chr7_3:81632456-81632475 None:intergenic 30.0%
!!! TGATTTTTTTGTTGGAGCTT+TGG + chr7_3:81632485-81632504 Msa1129660:CDS 30.0%
!!! GATTTTTTTGTTGGAGCTTT+GGG + chr7_3:81632486-81632505 Msa1129660:CDS 30.0%
ATAGATGGAATGAGAAATAC+TGG + chr7_3:81632528-81632547 Msa1129660:CDS 30.0%
!!! TTTTTTACTGGCATGTACAA+TGG - chr7_3:81632733-81632752 None:intergenic 30.0%
ACCAAAGAAAAAACAGGAAA+GGG - chr7_3:81632783-81632802 None:intergenic 30.0%
AACCAAAGAAAAAACAGGAA+AGG - chr7_3:81632784-81632803 None:intergenic 30.0%
! TGTCTTACACAAAGTGCTTA+TGG + chr7_3:81627765-81627784 Msa1129660:five_prime_UTR 35.0%
! TTCCTTCTTTCTTGTTTGGT+TGG + chr7_3:81627938-81627957 Msa1129660:intron 35.0%
! TTGGCTATTCTTGGTAACTT+TGG + chr7_3:81628353-81628372 Msa1129660:CDS 35.0%
GCATAGAAAAATGAGCAAAC+TGG - chr7_3:81628385-81628404 None:intergenic 35.0%
GGAAAATAACTTACTGATGG+TGG - chr7_3:81628438-81628457 None:intergenic 35.0%
TTTGAGGGAAGAAAAACAGT+AGG - chr7_3:81628670-81628689 None:intergenic 35.0%
TTTGAGGGAAGAAAAACAGT+AGG - chr7_3:81628670-81628689 None:intergenic 35.0%
! ATACAGTTGAAACTTTAGGG+AGG + chr7_3:81629183-81629202 Msa1129660:intron 35.0%
ATGTTATCTTGTAGCAAGTG+CGG - chr7_3:81629335-81629354 None:intergenic 35.0%
TATCTTTGCTTTACTCAGCT+TGG + chr7_3:81629644-81629663 Msa1129660:CDS 35.0%
! CACTTACTTCTCTCAGTTTT+AGG - chr7_3:81629688-81629707 None:intergenic 35.0%
AGTAAGTGCTTATGGAAACT+TGG + chr7_3:81629700-81629719 Msa1129660:CDS 35.0%
!! TTTTCCAAATGTGGAGCATT+AGG - chr7_3:81629745-81629764 None:intergenic 35.0%
CTAAAAGGAACTTGACATTC+GGG - chr7_3:81630409-81630428 None:intergenic 35.0%
GCTAAAAGGAACTTGACATT+CGG - chr7_3:81630410-81630429 None:intergenic 35.0%
!! CTTGCTATTGCAATCAATGA+AGG + chr7_3:81630491-81630510 Msa1129660:CDS 35.0%
GGATATGCAGATTCATAGAA+TGG - chr7_3:81630586-81630605 None:intergenic 35.0%
ATTGAGGATGCATTGAGTAA+AGG + chr7_3:81630745-81630764 Msa1129660:CDS 35.0%
! GATTGATTGATTCCGTAACA+AGG + chr7_3:81630872-81630891 Msa1129660:intron 35.0%
TTATGTTCAGGACCTTGTTA+CGG - chr7_3:81630887-81630906 None:intergenic 35.0%
CTTATGTCAATGTATGATGC+AGG + chr7_3:81630923-81630942 Msa1129660:intron 35.0%
TCAATGTATGATGCAGGATA+TGG + chr7_3:81630929-81630948 Msa1129660:intron 35.0%
CAATGTATGATGCAGGATAT+GGG + chr7_3:81630930-81630949 Msa1129660:intron 35.0%
AATGTATGATGCAGGATATG+GGG + chr7_3:81630931-81630950 Msa1129660:intron 35.0%
GTTGGTTGCAAATAATTCCA+CGG - chr7_3:81630961-81630980 None:intergenic 35.0%
CAACCAACAACCGATATAAA+CGG + chr7_3:81630973-81630992 Msa1129660:CDS 35.0%
CACAAGACTTCCGTTTATAT+CGG - chr7_3:81630986-81631005 None:intergenic 35.0%
AAGTTGCATGTGTATTCAGT+CGG - chr7_3:81631271-81631290 None:intergenic 35.0%
CACATGCAACTTATTGAATG+AGG + chr7_3:81631279-81631298 Msa1129660:CDS 35.0%
ATTAGTGGAGAGTTAACCTT+TGG - chr7_3:81631370-81631389 None:intergenic 35.0%
AATAGGCCAAAAAGTGAACT+TGG - chr7_3:81631623-81631642 None:intergenic 35.0%
AAGCAATTACGCATTTGACA+CGG + chr7_3:81631760-81631779 Msa1129660:intron 35.0%
CGCATTCTAACTTGGTATAT+TGG + chr7_3:81631820-81631839 Msa1129660:intron 35.0%
AGCATGTAAAAATGGACCAT+AGG - chr7_3:81631951-81631970 None:intergenic 35.0%
!!! TTGTCATGTATTTTGACCTC+TGG + chr7_3:81631977-81631996 Msa1129660:intron 35.0%
TAAAGCATGTGAAATGAGAG+TGG + chr7_3:81632118-81632137 Msa1129660:CDS 35.0%
TCCCAAACCTCAATAACATT+TGG + chr7_3:81632189-81632208 Msa1129660:CDS 35.0%
!!! ACGGACTCTGATTTTTTTGT+TGG + chr7_3:81632477-81632496 Msa1129660:CDS 35.0%
AATGAGAAATACTGGTGGAA+AGG + chr7_3:81632536-81632555 Msa1129660:CDS 35.0%
!! AACAAGGACAGATTTTGGTA+GGG + chr7_3:81632582-81632601 Msa1129660:CDS 35.0%
!!! TCCCTTTCCTGTTTTTTCTT+TGG + chr7_3:81632779-81632798 Msa1129660:three_prime_UTR 35.0%
AGCCAACCAAACAAGAAAGA+AGG - chr7_3:81627943-81627962 None:intergenic 40.0%
TTGAGAGAGTGGTTTCTCAA+AGG + chr7_3:81628249-81628268 Msa1129660:CDS 40.0%
TGAGAGAGTGGTTTCTCAAA+GGG + chr7_3:81628250-81628269 Msa1129660:CDS 40.0%
!!! TGTGCTGTTGCACTTTTTTG+TGG + chr7_3:81628308-81628327 Msa1129660:CDS 40.0%
CTGAGAGAAGTAAGTGCTTA+TGG + chr7_3:81629692-81629711 Msa1129660:CDS 40.0%
! GCGTTGCAATTTTCCAAATG+TGG - chr7_3:81629754-81629773 None:intergenic 40.0%
GAAATGATTCCTTTCCACCA+TGG + chr7_3:81629812-81629831 Msa1129660:CDS 40.0%
AATCCTTTCCTACTTGTCCA+TGG - chr7_3:81629832-81629851 None:intergenic 40.0%
ATTAAGAAACATACCCAGGG+TGG - chr7_3:81629895-81629914 None:intergenic 40.0%
! TAGAAGCTTTTGCAGATTGC+AGG + chr7_3:81630302-81630321 Msa1129660:intron 40.0%
! AGAAGCTTTTGCAGATTGCA+GGG + chr7_3:81630303-81630322 Msa1129660:intron 40.0%
!! CGTTGAACTTTTCTAGTCAG+AGG - chr7_3:81630347-81630366 None:intergenic 40.0%
GAAAAGTTCAACGCGACATA+TGG + chr7_3:81630354-81630373 Msa1129660:CDS 40.0%
!! TCAAGTTCCTTTTAGCTGAC+TGG + chr7_3:81630414-81630433 Msa1129660:CDS 40.0%
!! CAAGTTCCTTTTAGCTGACT+GGG + chr7_3:81630415-81630434 Msa1129660:CDS 40.0%
AGATTACCTGGATTTGGCAT+TGG + chr7_3:81630440-81630459 Msa1129660:CDS 40.0%
TACAATAGGGCTGATCATGA+TGG + chr7_3:81630536-81630555 Msa1129660:CDS 40.0%
CAGTATTGCGAACATCTACT+TGG + chr7_3:81630623-81630642 Msa1129660:intron 40.0%
AGTAGCAATTCCAGCTAGAT+CGG - chr7_3:81630672-81630691 None:intergenic 40.0%
GTTGGAACTCGTGAAAATTG+AGG + chr7_3:81630729-81630748 Msa1129660:CDS 40.0%
! CTTCCGTTTATATCGGTTGT+TGG - chr7_3:81630979-81630998 None:intergenic 40.0%
CGATATAAACGGAAGTCTTG+TGG + chr7_3:81630984-81631003 Msa1129660:CDS 40.0%
TGTGGCTTCACATCGAAAAA+TGG + chr7_3:81631002-81631021 Msa1129660:CDS 40.0%
CACATCGAAAAATGGATCGA+CGG + chr7_3:81631010-81631029 Msa1129660:CDS 40.0%
AGGCTGTACGTTACTTAATG+AGG + chr7_3:81631242-81631261 Msa1129660:intron 40.0%
AGTTGCATGTGTATTCAGTC+GGG - chr7_3:81631270-81631289 None:intergenic 40.0%
!!! TTTCGCAGCCATTTTTCCAA+AGG - chr7_3:81631317-81631336 None:intergenic 40.0%
TGGAAAAATGGCTGCGAAAA+TGG + chr7_3:81631318-81631337 Msa1129660:CDS 40.0%
TCTTATTGGAGAATGGCCAA+AGG + chr7_3:81631351-81631370 Msa1129660:CDS 40.0%
TTGGATTCTCTGTATCTGTC+CGG + chr7_3:81631505-81631524 Msa1129660:intron 40.0%
CAAGATTTAGTTGGACGAAC+CGG - chr7_3:81631527-81631546 None:intergenic 40.0%
TCCAACTAAATCTTGGCTGT+TGG + chr7_3:81631532-81631551 Msa1129660:intron 40.0%
CCAACTAAATCTTGGCTGTT+GGG + chr7_3:81631533-81631552 Msa1129660:intron 40.0%
ATTTAGCTGGAGAAGCTAGA+CGG + chr7_3:81631586-81631605 Msa1129660:CDS 40.0%
CAAGTTAGAATGCGATCATC+TGG - chr7_3:81631814-81631833 None:intergenic 40.0%
CAGATGATCGCATTCTAACT+TGG + chr7_3:81631812-81631831 Msa1129660:intron 40.0%
CAATCTAAACCACCTGATCA+AGG - chr7_3:81631876-81631895 None:intergenic 40.0%
CTTGATCAGGTGGTTTAGAT+TGG + chr7_3:81631874-81631893 Msa1129660:intron 40.0%
ACCAAGGAATCCAAATCCTA+TGG + chr7_3:81631932-81631951 Msa1129660:intron 40.0%
ACCATAGGATTTGGATTCCT+TGG - chr7_3:81631936-81631955 None:intergenic 40.0%
CTTACATGCATGCTTAGAAG+AGG - chr7_3:81632089-81632108 None:intergenic 40.0%
CTCTTCTAAGCATGCATGTA+AGG + chr7_3:81632087-81632106 Msa1129660:CDS 40.0%
TCTAAGCATGCATGTAAGGA+TGG + chr7_3:81632091-81632110 Msa1129660:CDS 40.0%
CTAAGCATGCATGTAAGGAT+GGG + chr7_3:81632092-81632111 Msa1129660:CDS 40.0%
!! TGCAGCTTGCTGATAGAATT+AGG + chr7_3:81632159-81632178 Msa1129660:CDS 40.0%
CCACCTAGAAGAATACTCTT+TGG - chr7_3:81632337-81632356 None:intergenic 40.0%
!! CCAAAGAGTATTCTTCTAGG+TGG + chr7_3:81632334-81632353 Msa1129660:CDS 40.0%
CAAAGGTAAGAAGGCAAGAT+AGG + chr7_3:81632370-81632389 Msa1129660:CDS 40.0%
!! ACTTGGTGCTTCCTTATAGA+TGG + chr7_3:81632513-81632532 Msa1129660:CDS 40.0%
GATGGAATGAGAAATACTGG+TGG + chr7_3:81632531-81632550 Msa1129660:CDS 40.0%
!! CAACAAGGACAGATTTTGGT+AGG + chr7_3:81632581-81632600 Msa1129660:CDS 40.0%
ATGGCCCACAAGTTTCTTTG+AGG + chr7_3:81628090-81628109 Msa1129660:five_prime_UTR 45.0%
GCCACCTCAAAGAAACTTGT+GGG - chr7_3:81628097-81628116 None:intergenic 45.0%
TGCCACCTCAAAGAAACTTG+TGG - chr7_3:81628098-81628117 None:intergenic 45.0%
TACTACTCCTCTTGAGAGAG+TGG + chr7_3:81628238-81628257 Msa1129660:CDS 45.0%
TGAGAAACCACTCTCTCAAG+AGG - chr7_3:81628248-81628267 None:intergenic 45.0%
GCAACAGCACATATCTGACA+TGG - chr7_3:81628299-81628318 None:intergenic 45.0%
AAGTGCGGTCTGAGTCAAAA+AGG - chr7_3:81629320-81629339 None:intergenic 45.0%
! ATGTGGAGCATTAGGCAAGT+TGG - chr7_3:81629737-81629756 None:intergenic 45.0%
CTTGCCTAATGCTCCACATT+TGG + chr7_3:81629738-81629757 Msa1129660:CDS 45.0%
TTCCTATACGTGTGTCGAGA+CGG - chr7_3:81629795-81629814 None:intergenic 45.0%
TACCCTCAGATACAGCAAGA+GGG - chr7_3:81629867-81629886 None:intergenic 45.0%
TTACCCTCAGATACAGCAAG+AGG - chr7_3:81629868-81629887 None:intergenic 45.0%
GCATGCAGAGTAGATACTTG+AGG + chr7_3:81630235-81630254 Msa1129660:intron 45.0%
ATCTCTCCCAGTCAGCTAAA+AGG - chr7_3:81630424-81630443 None:intergenic 45.0%
TGGGAGAGATTACCTGGATT+TGG + chr7_3:81630434-81630453 Msa1129660:CDS 45.0%
GCTCAAATTGCTGGAATGTG+TGG + chr7_3:81630464-81630483 Msa1129660:CDS 45.0%
ACTTGGAATGTTGCTCATGC+AGG + chr7_3:81630640-81630659 Msa1129660:intron 45.0%
CTTGGAATGTTGCTCATGCA+GGG + chr7_3:81630641-81630660 Msa1129660:intron 45.0%
GTAGCAATTCCAGCTAGATC+GGG - chr7_3:81630671-81630690 None:intergenic 45.0%
GTTCTTGTGAAAGCTTGCCT+AGG - chr7_3:81630826-81630845 None:intergenic 45.0%
ATCGAAAAATGGATCGACGG+TGG + chr7_3:81631013-81631032 Msa1129660:CDS 45.0%
!! CCATTTTTCCAAAGGCAGCA+TGG - chr7_3:81631309-81631328 None:intergenic 45.0%
! CCATGCTGCCTTTGGAAAAA+TGG + chr7_3:81631306-81631325 Msa1129660:CDS 45.0%
CGGTTCGTCCAACTAAATCT+TGG + chr7_3:81631525-81631544 Msa1129660:intron 45.0%
CCCAACAGCCAAGATTTAGT+TGG - chr7_3:81631536-81631555 None:intergenic 45.0%
AAATCTTGGCTGTTGGGTCT+AGG + chr7_3:81631539-81631558 Msa1129660:intron 45.0%
ATGCGTAATTGCTTGAGTGC+AGG - chr7_3:81631724-81631743 None:intergenic 45.0%
GAATGTGAACGACCTTGATC+AGG + chr7_3:81631861-81631880 Msa1129660:intron 45.0%
CCTTGGTACTCATGCAATCA+CGG - chr7_3:81631919-81631938 None:intergenic 45.0%
TTTCTACCATTCTCCTCCTG+AGG - chr7_3:81632008-81632027 None:intergenic 45.0%
GCATGCTTAGAAGAGGTCTT+GGG - chr7_3:81632082-81632101 None:intergenic 45.0%
TGCATGCTTAGAAGAGGTCT+TGG - chr7_3:81632083-81632102 None:intergenic 45.0%
!! TTGGAGCTTTGGGTTCAACT+TGG + chr7_3:81632496-81632515 Msa1129660:CDS 45.0%
! GCGTCAACAAGGACAGATTT+TGG + chr7_3:81632577-81632596 Msa1129660:CDS 45.0%
!!! TACAATAATTTTTTTTTTTA+GGG + chr7_3:81628850-81628869 Msa1129660:intron 5.0%
! GCCCACAAGTTTCTTTGAGG+TGG + chr7_3:81628093-81628112 Msa1129660:five_prime_UTR 50.0%
AACCGTCTCGACACACGTAT+AGG + chr7_3:81629790-81629809 Msa1129660:CDS 50.0%
! CCTACTTGTCCATGGTGGAA+AGG - chr7_3:81629824-81629843 None:intergenic 50.0%
CCTTTCCACCATGGACAAGT+AGG + chr7_3:81629821-81629840 Msa1129660:CDS 50.0%
CCTTTCCTACTTGTCCATGG+TGG - chr7_3:81629829-81629848 None:intergenic 50.0%
CCACCATGGACAAGTAGGAA+AGG + chr7_3:81629826-81629845 Msa1129660:CDS 50.0%
ACCCTCAGATACAGCAAGAG+GGG - chr7_3:81629866-81629885 None:intergenic 50.0%
TGAGGGTAATCATCCACCCT+GGG + chr7_3:81629879-81629898 Msa1129660:CDS 50.0%
TTCGGGTCGCTACAGTTTGA+TGG - chr7_3:81630392-81630411 None:intergenic 50.0%
TGAGCTCCAATGCCAAATCC+AGG - chr7_3:81630449-81630468 None:intergenic 50.0%
! GGCATTGGAGCTCAAATTGC+TGG + chr7_3:81630455-81630474 Msa1129660:CDS 50.0%
GCTGATCATGATGGCTGCAA+GGG + chr7_3:81630545-81630564 Msa1129660:CDS 50.0%
ACGTCGAAGCATATATGGGC+AGG + chr7_3:81630793-81630812 Msa1129660:CDS 50.0%
GTGAAAGCTTGCCTAGGAGT+TGG - chr7_3:81630820-81630839 None:intergenic 50.0%
GAAAAATGGATCGACGGTGG+TGG + chr7_3:81631016-81631035 Msa1129660:CDS 50.0%
TCCAACGTGCGACATTTAGC+TGG + chr7_3:81631573-81631592 Msa1129660:CDS 50.0%
TCCAGCTAAATGTCGCACGT+TGG - chr7_3:81631577-81631596 None:intergenic 50.0%
TGTGAACGACCTTGATCAGG+TGG + chr7_3:81631864-81631883 Msa1129660:intron 50.0%
! ATTGGTGTCCCCGTGAATCA+CGG + chr7_3:81631892-81631911 Msa1129660:intron 50.0%
CCGTGATTGCATGAGTACCA+AGG + chr7_3:81631916-81631935 Msa1129660:intron 50.0%
TATGGTCCAATCACAAGCCC+TGG + chr7_3:81632054-81632073 Msa1129660:CDS 50.0%
ATGGTCCAATCACAAGCCCT+GGG + chr7_3:81632055-81632074 Msa1129660:CDS 50.0%
! GCTGAGTATGAAGCTAGCCT+GGG + chr7_3:81632408-81632427 Msa1129660:CDS 50.0%
! AGTATGAAGCTAGCCTGGGA+AGG + chr7_3:81632412-81632431 Msa1129660:CDS 50.0%
! GTATGAAGCTAGCCTGGGAA+GGG + chr7_3:81632413-81632432 Msa1129660:CDS 50.0%
ACTGGTGGAAAGGTCATGTC+TGG + chr7_3:81632546-81632565 Msa1129660:CDS 50.0%
TGGCTACTTGAGCGTCAACA+AGG + chr7_3:81632566-81632585 Msa1129660:CDS 50.0%
CCCTCAGATACAGCAAGAGG+GGG - chr7_3:81629865-81629884 None:intergenic 55.0%
! CCCCCTCTTGCTGTATCTGA+GGG + chr7_3:81629862-81629881 Msa1129660:CDS 55.0%
CTGAGGGTAATCATCCACCC+TGG + chr7_3:81629878-81629897 Msa1129660:CDS 55.0%
GCTGACTGGGAGAGATTACC+TGG + chr7_3:81630428-81630447 Msa1129660:CDS 55.0%
GGCTGATCATGATGGCTGCA+AGG + chr7_3:81630544-81630563 Msa1129660:CDS 55.0%
AGAATGTCGCCAACGTGCGT+TGG + chr7_3:81630711-81630730 Msa1129660:CDS 55.0%
TCACGAGTTCCAACGCACGT+TGG - chr7_3:81630723-81630742 None:intergenic 55.0%
TATGGGCAGGACCAACTCCT+AGG + chr7_3:81630806-81630825 Msa1129660:CDS 55.0%
! TTGGTGTCCCCGTGAATCAC+GGG + chr7_3:81631893-81631912 Msa1129660:intron 55.0%
AATCACGGCCCGTGATTCAC+GGG - chr7_3:81631904-81631923 None:intergenic 55.0%
CAATCACGGCCCGTGATTCA+CGG - chr7_3:81631905-81631924 None:intergenic 55.0%
! TTGACCTCTGGAGATGCCTC+AGG + chr7_3:81631989-81632008 Msa1129660:intron 55.0%
GAGATGCCTCAGGAGGAGAA+TGG + chr7_3:81631999-81632018 Msa1129660:intron 55.0%
AGAAGAGGTCTTGGGACCCA+GGG - chr7_3:81632074-81632093 None:intergenic 55.0%
TAGAAGAGGTCTTGGGACCC+AGG - chr7_3:81632075-81632094 None:intergenic 55.0%
GGCTGAGTATGAAGCTAGCC+TGG + chr7_3:81632407-81632426 Msa1129660:CDS 55.0%
TAGTGCTTCTCTCCCTTCCC+AGG - chr7_3:81632428-81632447 None:intergenic 55.0%
! GCCCCCTCTTGCTGTATCTG+AGG + chr7_3:81629861-81629880 Msa1129660:CDS 60.0%
ATCACGGCCCGTGATTCACG+GGG - chr7_3:81631903-81631922 None:intergenic 60.0%
! ACCTCTGGAGATGCCTCAGG+AGG + chr7_3:81631992-81632011 Msa1129660:intron 60.0%
! TCCTCCTGAGGCATCTCCAG+AGG - chr7_3:81631996-81632015 None:intergenic 60.0%
TGGGACCCAGGGCTTGTGAT+TGG - chr7_3:81632063-81632082 None:intergenic 60.0%
CAGGGCTGTCCCGATCTAGC+TGG + chr7_3:81630659-81630678 Msa1129660:intron 65.0%
GCAGGATATGGGGCGATCCG+TGG + chr7_3:81630941-81630960 Msa1129660:intron 65.0%
!! GAGGAGCGCCATGCTGCCTT+TGG + chr7_3:81631298-81631317 Msa1129660:CDS 65.0%
! TCGACGGTGGTGGCGAGCAC+AGG + chr7_3:81631026-81631045 Msa1129660:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81627728 81632803 81627728 ID=Msa1129660;Name=Msa1129660
chr7_3 mRNA 81627728 81632803 81627728 ID=Msa1129660-mRNA-1;Parent=Msa1129660;Name=Msa1129660-mRNA-1;_AED=0.26;_eAED=0.26;_QI=240|0.77|0.9|1|0.88|0.8|10|201|603
chr7_3 exon 81627728 81627830 81627728 ID=Msa1129660-mRNA-1:exon:23827;Parent=Msa1129660-mRNA-1
chr7_3 exon 81628048 81628443 81628048 ID=Msa1129660-mRNA-1:exon:23828;Parent=Msa1129660-mRNA-1
chr7_3 exon 81629563 81629900 81629563 ID=Msa1129660-mRNA-1:exon:23829;Parent=Msa1129660-mRNA-1
chr7_3 exon 81630317 81630566 81630317 ID=Msa1129660-mRNA-1:exon:23830;Parent=Msa1129660-mRNA-1
chr7_3 exon 81630662 81630827 81630662 ID=Msa1129660-mRNA-1:exon:23831;Parent=Msa1129660-mRNA-1
chr7_3 exon 81630945 81631047 81630945 ID=Msa1129660-mRNA-1:exon:23832;Parent=Msa1129660-mRNA-1
chr7_3 exon 81631244 81631372 81631244 ID=Msa1129660-mRNA-1:exon:23833;Parent=Msa1129660-mRNA-1
chr7_3 exon 81631561 81631623 81631561 ID=Msa1129660-mRNA-1:exon:23834;Parent=Msa1129660-mRNA-1
chr7_3 exon 81632011 81632229 81632011 ID=Msa1129660-mRNA-1:exon:23835;Parent=Msa1129660-mRNA-1
chr7_3 exon 81632318 81632803 81632318 ID=Msa1129660-mRNA-1:exon:23836;Parent=Msa1129660-mRNA-1
chr7_3 five_prime_UTR 81627728 81627830 81627728 ID=Msa1129660-mRNA-1:five_prime_utr;Parent=Msa1129660-mRNA-1
chr7_3 five_prime_UTR 81628048 81628184 81628048 ID=Msa1129660-mRNA-1:five_prime_utr;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81628185 81628443 81628185 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81629563 81629900 81629563 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81630317 81630566 81630317 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81630662 81630827 81630662 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81630945 81631047 81630945 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81631244 81631372 81631244 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81631561 81631623 81631561 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81632011 81632229 81632011 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 CDS 81632318 81632602 81632318 ID=Msa1129660-mRNA-1:cds;Parent=Msa1129660-mRNA-1
chr7_3 three_prime_UTR 81632603 81632803 81632603 ID=Msa1129660-mRNA-1:three_prime_utr;Parent=Msa1129660-mRNA-1
Gene Sequence

>Msa1129660

ATGTTCATGCATAAAGAAAAGGAGAGTGAAATGGAGCCATTAAATCAAAGGTCTACTACTCCTCTTGAGAGAGTGGTTTCTCAAAGGGCATTGCAAATGAGCAATTCATTTCCATGTCAGATATGTGCTGTTGCACTTTTTTGTGGACTCTGTATTGTTTCTTTGATTTTGGCTATTCTTGGTAACTTTGGTAACTTCCAGTTTGCTCATTTTTCTATGCTTAGTTTATCATTCAATTCAGATCTCAATACCACCATCACACAGTGCTCCTTTAAACCTAAAGAAATAGAAAGATTAACAGATTTGAAGAGCAGAAAAGAGATTAATCAAGATGAAAGGGTATCTTTGCTTTACTCAGCTTGGAGTTGTGTGTTAACTGAACCTAAAACTGAGAGAAGTAAGTGCTTATGGAAACTTGGTATTAGTGAGTCCAACTTGCCTAATGCTCCACATTTGGAAAATTGCAACGCGAAATCGCAGCTGCATAACCGTCTCGACACACGTATAGGAAATGATTCCTTTCCACCATGGACAAGTAGGAAAGGATTGTTGAACATGCCCCCTCTTGCTGTATCTGAGGGTAATCATCCACCCTGGATTGCAGGGTCTGATGAAGAAAACTATCCTCTGACTAGAAAAGTTCAACGCGACATATGGATTCATCAGCATCCATCAAACTGTAGCGACCCGAATGTCAAGTTCCTTTTAGCTGACTGGGAGAGATTACCTGGATTTGGCATTGGAGCTCAAATTGCTGGAATGTGTGGACTTCTTGCTATTGCAATCAATGAAGGAAGAGTCCTTGTCACTAACTTCTACAATAGGGCTGATCATGATGGCTGCAAGGGGCTGTCCCGATCTAGCTGGAATTGCTACTTCTTTGCAGAAACTTCTGTAGAATGTCGCCAACGTGCGTTGGAACTCGTGAAAATTGAGGATGCATTGAGTAAAGGAATTTTGACGACAAAAGAAAATTATACGTCGAAGCATATATGGGCAGGACCAACTCCTAGGATATGGGGCGATCCGTGGAATTATTTGCAACCAACAACCGATATAAACGGAAGTCTTGTGGCTTCACATCGAAAAATGGATCGACGGTGGTGGCGAGCACAGGCTGTACGTTACTTAATGAGGTTCCCGACTGAATACACATGCAACTTATTGAATGAGGAGCGCCATGCTGCCTTTGGAAAAATGGCTGCGAAAATGGTTCTAAAAAGTCTTATTGGAGAATGGCCAAAGGTTGCAGCTCGATCCAACGTGCGACATTTAGCTGGAGAAGCTAGACGGCTACGTAGAATCCAAGAGGAGAATGGTAGAAAGCCAAAGTCTGATATTGATAAATTTGTATGGTCCAATCACAAGCCCTGGGTCCCAAGACCTCTTCTAAGCATGCATGTAAGGATGGGAGATAAAGCATGTGAAATGAGAGTGGTTGAATTTGAAGAGTACATGCAGCTTGCTGATAGAATTAGGAGTCATTTCCCAAACCTCAATAACATTTGGTTGTCTACAGAGATGCAGGAAGTGATAGACAAAACCAAAGAGTATTCTTCTAGGTGGAACTTTCATTATACAAAGGTAAGAAGGCAAGATAGGAGTAATGTTTCAATGGCTGAGTATGAAGCTAGCCTGGGAAGGGAGAGAAGCACTAATTATCCACTTGTTAATTTTCTTATGGCTACGGACTCTGATTTTTTTGTTGGAGCTTTGGGTTCAACTTGGTGCTTCCTTATAGATGGAATGAGAAATACTGGTGGAAAGGTCATGTCTGGCTACTTGAGCGTCAACAAGGACAGATTTTGGTAG

Protein sequence

>Msa1129660

MFMHKEKESEMEPLNQRSTTPLERVVSQRALQMSNSFPCQICAVALFCGLCIVSLILAILGNFGNFQFAHFSMLSLSFNSDLNTTITQCSFKPKEIERLTDLKSRKEINQDERVSLLYSAWSCVLTEPKTERSKCLWKLGISESNLPNAPHLENCNAKSQLHNRLDTRIGNDSFPPWTSRKGLLNMPPLAVSEGNHPPWIAGSDEENYPLTRKVQRDIWIHQHPSNCSDPNVKFLLADWERLPGFGIGAQIAGMCGLLAIAINEGRVLVTNFYNRADHDGCKGLSRSSWNCYFFAETSVECRQRALELVKIEDALSKGILTTKENYTSKHIWAGPTPRIWGDPWNYLQPTTDINGSLVASHRKMDRRWWRAQAVRYLMRFPTEYTCNLLNEERHAAFGKMAAKMVLKSLIGEWPKVAARSNVRHLAGEARRLRRIQEENGRKPKSDIDKFVWSNHKPWVPRPLLSMHVRMGDKACEMRVVEFEEYMQLADRIRSHFPNLNNIWLSTEMQEVIDKTKEYSSRWNFHYTKVRRQDRSNVSMAEYEASLGRERSTNYPLVNFLMATDSDFFVGALGSTWCFLIDGMRNTGGKVMSGYLSVNKDRFW*