AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1022660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022660 MtrunA17_Chr7g0239511 91.729 266 22 0 42 307 1 266 0.0 510
Msa1022660 MtrunA17_Chr7g0239501 86.466 266 36 0 42 307 1 266 1.19e-173 481
Msa1022660 MtrunA17_Chr7g0239451 78.113 265 58 0 42 306 1 265 1.03e-154 433
Msa1022660 MtrunA17_Chr7g0239491 74.340 265 66 2 42 306 1 263 4.87e-145 408
Msa1022660 MtrunA17_Chr7g0239481 74.436 266 67 1 42 307 1 265 4.57e-142 401
Msa1022660 MtrunA17_Chr7g0239461 61.509 265 52 3 42 306 1 215 1.02e-110 320
Msa1022660 MtrunA17_Chr3g0112151 57.463 268 110 1 40 307 69 332 3.39e-104 308
Msa1022660 MtrunA17_Chr4g0032141 57.031 256 106 1 52 307 51 302 3.96e-103 304
Msa1022660 MtrunA17_Chr3g0112261 56.923 260 108 1 48 307 10 265 5.92e-101 297
Msa1022660 MtrunA17_Chr3g0112271 55.849 265 113 1 43 307 3 263 2.61e-100 295
Msa1022660 MtrunA17_Chr3g0112171 57.769 251 102 1 57 307 15 261 6.07e-98 289
Msa1022660 MtrunA17_Chr3g0112141 56.000 250 106 1 57 306 17 262 3.74e-92 275
Msa1022660 MtrunA17_Chr4g0032181 54.043 235 104 1 73 307 17 247 6.37e-86 258
Msa1022660 MtrunA17_Chr7g0259521 31.641 256 161 7 57 305 6 254 7.69e-26 103
Msa1022660 MtrunA17_Chr7g0259531 31.939 263 159 6 53 305 7 259 7.92e-25 100
Msa1022660 MtrunA17_Chr4g0075531 31.783 258 151 7 57 305 7 248 1.45e-24 99.8
Msa1022660 MtrunA17_Chr3g0122901 30.000 250 160 6 63 307 81 320 2.24e-24 100
Msa1022660 MtrunA17_Chr0c30g0494101 30.566 265 156 8 57 307 40 290 2.72e-21 91.7
Msa1022660 MtrunA17_Chr4g0026001 30.435 253 167 6 57 307 14 259 3.62e-21 90.9
Msa1022660 MtrunA17_Chr4g0074511 30.566 265 158 8 57 307 40 292 1.16e-20 90.1
Msa1022660 MtrunA17_Chr8g0357481 27.237 257 174 5 57 305 14 265 2.41e-20 89.4
Msa1022660 MtrunA17_Chr1g0182511 30.769 260 159 6 57 305 14 263 2.65e-20 88.6
Msa1022660 MtrunA17_Chr4g0028911 29.457 258 171 8 57 307 11 264 6.98e-20 87.4
Msa1022660 MtrunA17_Chr4g0028921 29.344 259 170 7 57 307 11 264 2.02e-19 86.3
Msa1022660 MtrunA17_Chr7g0249571 29.756 205 138 4 45 244 26 229 2.29e-19 86.7
Msa1022660 MtrunA17_Chr3g0112321 48.544 103 33 3 189 288 2 87 3.55e-19 80.9
Msa1022660 MtrunA17_Chr4g0025971 28.740 254 170 6 57 307 14 259 1.22e-18 84.0
Msa1022660 MtrunA17_Chr1g0191751 27.907 258 167 8 57 304 101 349 1.95e-17 81.6
Msa1022660 MtrunA17_Chr7g0266981 29.670 273 164 7 48 307 4 261 2.41e-17 80.5
Msa1022660 MtrunA17_Chr7g0272961 28.846 260 162 8 57 304 40 288 2.51e-17 80.5
Msa1022660 MtrunA17_Chr4g0044111 29.670 273 164 7 48 307 4 261 2.64e-17 80.1
Msa1022660 MtrunA17_Chr4g0025981 28.063 253 171 6 58 307 42 286 4.21e-17 80.5
Msa1022660 MtrunA17_Chr4g0044131 27.734 256 171 7 57 306 8 255 6.20e-17 79.3
Msa1022660 MtrunA17_Chr6g0459301 29.710 276 168 10 42 305 1 262 7.71e-17 79.0
Msa1022660 MtrunA17_Chr6g0459261 28.058 278 175 8 39 305 10 273 2.21e-16 77.8
Msa1022660 MtrunA17_Chr6g0459281 28.148 270 179 8 42 305 1 261 6.03e-16 76.3
Msa1022660 MtrunA17_Chr7g0252031 30.651 261 162 9 57 306 35 287 1.25e-15 75.9
Msa1022660 MtrunA17_Chr8g0355281 30.049 203 126 7 57 247 69 267 2.87e-15 75.1
Msa1022660 MtrunA17_Chr7g0266891 28.030 264 162 6 57 307 7 255 5.82e-14 70.5
Msa1022660 MtrunA17_Chr4g0040371 27.481 262 169 7 57 306 19 271 6.34e-14 70.9
Msa1022660 MtrunA17_Chr6g0459271 28.235 255 171 7 57 305 13 261 3.65e-13 68.2
Msa1022660 MtrunA17_Chr8g0386201 29.075 227 151 7 56 275 44 267 8.54e-13 68.2
Msa1022660 MtrunA17_Chr1g0171831 25.397 252 174 7 57 297 14 262 1.41e-12 66.6
Msa1022660 MtrunA17_Chr7g0267011 27.513 189 130 5 57 242 8 192 2.28e-12 64.7
Msa1022660 MtrunA17_Chr6g0459331 27.451 255 173 7 57 305 13 261 3.84e-12 65.5
Msa1022660 MtrunA17_Chr3g0084871 30.739 257 169 6 57 306 16 270 5.11e-12 65.1
Msa1022660 MtrunA17_Chr4g0045061 32.057 209 124 8 59 254 6 209 5.19e-12 66.2
Msa1022660 MtrunA17_Chr7g0267001 26.378 254 159 9 57 306 8 237 6.76e-12 64.7
Msa1022660 MtrunA17_Chr3g0124471 28.571 210 140 6 34 242 6 206 3.72e-11 62.8
Msa1022660 MtrunA17_Chr3g0131521 33.108 148 96 3 53 199 28 173 9.78e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022660 AT5G06060.1 58.203 256 103 1 52 307 4 255 2.59e-108 316
Msa1022660 AT1G07440.1 55.253 257 110 1 51 307 6 257 4.60e-101 297
Msa1022660 AT2G29260.1 54.510 255 112 1 53 307 64 314 1.81e-98 293
Msa1022660 AT2G29290.2 54.688 256 112 1 52 307 2 253 7.80e-98 289
Msa1022660 AT2G29360.1 54.511 266 117 1 42 307 1 262 1.25e-97 289
Msa1022660 AT2G30670.1 53.906 256 114 2 52 307 2 253 3.12e-97 287
Msa1022660 AT2G29340.2 53.516 256 115 2 52 307 2 253 9.07e-97 286
Msa1022660 AT2G29340.1 53.516 256 115 2 52 307 2 253 2.43e-96 287
Msa1022660 AT2G29320.1 55.212 259 108 4 52 307 7 260 4.19e-96 285
Msa1022660 AT2G29300.1 54.264 258 111 3 52 307 2 254 6.25e-96 284
Msa1022660 AT2G29310.1 54.688 256 112 2 52 307 2 253 1.34e-95 283
Msa1022660 AT2G29300.2 54.475 257 110 3 52 306 2 253 3.24e-95 283
Msa1022660 AT2G29330.1 54.297 256 113 2 52 307 2 253 6.44e-95 281
Msa1022660 AT2G29150.1 53.759 266 118 3 42 307 1 261 1.69e-94 281
Msa1022660 AT2G29350.1 54.086 257 113 1 51 307 9 260 1.03e-92 276
Msa1022660 AT2G29370.1 54.406 261 112 3 49 307 7 262 2.15e-92 275
Msa1022660 AT1G07450.1 52.941 255 113 3 54 307 5 253 2.57e-91 272
Msa1022660 AT2G29320.2 53.165 237 104 3 73 307 11 242 8.60e-84 253
Msa1022660 AT2G29290.1 52.137 234 108 1 74 307 7 236 4.45e-83 251
Msa1022660 AT2G29310.2 52.340 235 108 2 73 307 21 251 4.24e-81 246
Msa1022660 AT2G29340.3 54.000 200 92 0 52 251 2 201 3.70e-76 232
Msa1022660 AT2G29340.4 54.000 200 92 0 52 251 2 201 3.70e-76 232
Msa1022660 AT2G29320.3 58.462 195 79 2 52 244 7 201 3.91e-76 232
Msa1022660 AT2G29350.3 51.770 226 104 1 82 307 2 222 1.66e-75 231
Msa1022660 AT2G29310.3 55.000 200 90 0 52 251 2 201 1.28e-74 228
Msa1022660 AT2G29350.2 57.143 196 84 0 51 246 9 204 2.47e-74 228
Msa1022660 AT1G07440.2 57.317 164 70 0 51 214 6 169 9.02e-65 202
Msa1022660 AT2G29310.4 51.955 179 86 0 73 251 21 199 9.14e-60 190
Msa1022660 AT2G29170.1 63.918 97 34 1 48 143 6 102 5.88e-39 133
Msa1022660 AT3G03980.1 33.704 270 162 4 48 305 5 269 4.75e-33 123
Msa1022660 AT5G18210.1 33.977 259 156 6 56 305 7 259 1.96e-30 115
Msa1022660 AT4G13180.1 33.721 258 157 6 57 307 13 263 3.23e-28 110
Msa1022660 AT5G18210.2 32.950 261 147 7 56 307 7 248 1.02e-26 106
Msa1022660 AT4G05530.1 32.400 250 160 5 57 305 9 250 3.14e-25 102
Msa1022660 AT1G24360.1 32.271 251 153 8 63 307 80 319 4.81e-25 102
Msa1022660 AT3G05260.1 32.576 264 152 8 57 307 37 287 4.06e-24 99.8
Msa1022660 AT1G54870.2 29.231 260 167 7 57 307 84 335 1.53e-23 99.0
Msa1022660 AT1G54870.1 29.572 257 164 7 57 304 82 330 1.95e-23 98.6
Msa1022660 AT3G04000.1 34.559 272 156 8 48 304 5 269 2.42e-23 97.4
Msa1022660 AT3G12800.1 26.996 263 168 7 57 305 10 262 1.25e-20 90.5
Msa1022660 AT3G55290.2 29.434 265 162 9 57 307 17 270 1.39e-19 87.0
Msa1022660 AT3G55290.1 29.434 265 162 9 57 307 18 271 1.45e-19 87.0
Msa1022660 AT3G03330.1 30.457 197 132 3 53 244 37 233 5.59e-19 86.3
Msa1022660 AT3G55310.1 27.099 262 172 8 57 307 17 270 1.88e-17 81.3
Msa1022660 AT1G63380.2 26.538 260 177 7 57 307 22 276 3.69e-17 80.5
Msa1022660 AT1G63380.3 26.538 260 177 7 57 307 15 269 3.99e-17 80.1
Msa1022660 AT1G63380.1 26.538 260 177 7 57 307 17 271 4.05e-17 80.1
Msa1022660 AT1G63380.4 26.538 260 177 7 57 307 19 273 4.12e-17 80.1
Msa1022660 AT5G04900.1 28.016 257 165 11 6 247 23 274 1.85e-16 79.3
Msa1022660 AT5G50590.2 29.101 189 123 6 57 240 45 227 4.18e-16 77.0
Msa1022660 AT5G50690.2 29.101 189 123 6 57 240 45 227 4.18e-16 77.0
Msa1022660 AT5G50590.1 29.101 189 123 6 57 240 45 227 1.30e-15 76.3
Msa1022660 AT5G50690.1 29.101 189 123 6 57 240 45 227 1.30e-15 76.3
Msa1022660 AT1G62610.4 26.744 258 179 8 57 307 19 273 1.62e-15 75.9
Msa1022660 AT1G62610.3 26.744 258 179 8 57 307 15 269 1.67e-15 75.5
Msa1022660 AT3G26760.1 28.413 271 171 8 50 306 29 290 1.76e-15 75.9
Msa1022660 AT1G62610.2 26.744 258 179 8 57 307 13 267 2.04e-15 75.5
Msa1022660 AT1G62610.1 26.744 258 179 8 57 307 14 268 2.15e-15 75.1
Msa1022660 AT3G51680.1 27.758 281 182 7 42 306 20 295 3.15e-15 75.1
Msa1022660 AT3G42960.1 30.350 257 159 8 62 306 13 261 3.63e-15 74.7
Msa1022660 AT4G03140.1 27.734 256 175 7 57 306 78 329 4.45e-15 75.1
Msa1022660 AT3G06060.1 27.179 195 133 3 62 252 42 231 3.82e-14 72.4
Msa1022660 AT5G65205.1 30.726 179 117 4 63 240 12 184 4.60e-14 71.6
Msa1022660 AT3G06060.2 27.179 195 133 3 62 252 59 248 5.60e-14 72.0
Msa1022660 AT3G26770.1 28.897 263 164 9 57 306 41 293 7.33e-14 71.2
Msa1022660 AT3G47350.2 28.241 216 140 8 59 267 46 253 9.25e-14 71.2
Msa1022660 AT3G47350.1 27.854 219 143 8 56 267 43 253 9.36e-14 70.9
Msa1022660 AT4G13250.1 28.293 205 126 4 63 247 165 368 1.38e-13 71.2
Msa1022660 AT2G17845.1 23.282 262 185 7 57 307 47 303 1.83e-13 70.1
Msa1022660 AT3G03350.2 31.847 157 94 3 92 245 207 353 2.14e-13 70.5
Msa1022660 AT1G52340.1 29.323 266 164 10 57 306 18 275 4.05e-13 68.9
Msa1022660 AT1G49670.2 31.222 221 134 9 59 266 6 221 5.98e-13 69.7
Msa1022660 AT1G49670.1 31.222 221 134 9 59 266 6 221 6.22e-13 69.7
Msa1022660 AT5G10050.1 28.962 183 123 4 63 244 11 187 6.85e-13 68.2
Msa1022660 AT2G47140.1 26.336 262 169 7 57 307 6 254 8.26e-12 64.7
Msa1022660 AT3G29260.1 27.444 266 160 9 57 307 6 253 5.87e-11 62.4
Msa1022660 AT5G50700.1 29.146 199 128 8 56 248 44 235 7.80e-11 62.8
Msa1022660 AT5G50600.1 29.146 199 128 8 56 248 44 235 7.80e-11 62.8

Find 65 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAGAGTTAGCAGAATT+TGG 0.185342 7_1:+49283513 Msa1022660:CDS
ATAATTAAAATTACCTTTAG+AGG 0.208184 7_1:-49284774 None:intergenic
CCATTCCAATGCTAAGTTCT+TGG 0.213276 7_1:-49284905 None:intergenic
GTTAGGTGATGGTCGAATTT+AGG 0.261318 7_1:+49286081 Msa1022660:three_prime_UTR
GTATACATATCCTCAATTTC+AGG 0.273951 7_1:+49284716 Msa1022660:CDS
ACCTGTGATGACCTTACTTT+TGG 0.297664 7_1:+49284966 Msa1022660:CDS
ACCAATGCTGATATATCTTT+AGG 0.318330 7_1:-49285794 None:intergenic
TTAACAAATGTTTGAAAGAA+TGG 0.322643 7_1:+49283574 Msa1022660:CDS
GTTCTTGGTGCATTGATTCA+TGG 0.329472 7_1:-49284890 None:intergenic
GTATTATCTAAGATGGGTTT+AGG 0.353458 7_1:-49284590 None:intergenic
TTCATCAGTATTATCTAAGA+TGG 0.370033 7_1:-49284597 None:intergenic
CGTGCTAATGTTGTGGCTCC+TGG 0.373198 7_1:+49284943 Msa1022660:CDS
AACTGTTAGGTAAACAATGC+TGG 0.396239 7_1:+49284557 Msa1022660:intron
TTTAGGTAACTGTACTAAAT+CGG 0.401940 7_1:+49286098 Msa1022660:three_prime_UTR
TTTCATGTGAAGAATATTGC+TGG 0.411479 7_1:-49283109 None:intergenic
GGAATGACAGCTCTAGTAAC+TGG 0.411724 7_1:+49283359 Msa1022660:CDS
TGCATCAGTCCGCAACAAAT+AGG 0.417025 7_1:-49286046 None:intergenic
ATGGTAACCAGACACAAAAT+TGG 0.420948 7_1:-49284642 None:intergenic
GGTGTGCAAGTTGGCACAAA+TGG 0.434463 7_1:-49284661 None:intergenic
CCAGCTTCTTCACACATAAC+CGG 0.436902 7_1:+49285833 Msa1022660:CDS
ATCTGCTGCTATAATTTGTC+CGG 0.440485 7_1:-49285852 None:intergenic
ATGCATGTATGTTTAATGTT+AGG 0.442001 7_1:+49286064 Msa1022660:three_prime_UTR
TTACTAGAGCTGTCATTCCT+TGG 0.449411 7_1:-49283355 None:intergenic
GAAGATATAACAACTACAAT+TGG 0.449713 7_1:+49284617 Msa1022660:CDS
ACAGTAGCTTCAATCTTTCA+AGG 0.454086 7_1:+49283672 Msa1022660:CDS
TCTGTCTATGCAGCCTCTAA+AGG 0.472464 7_1:+49284761 Msa1022660:CDS
CATAGTTGTCTCCAAAAGTA+AGG 0.480973 7_1:-49284977 None:intergenic
ATCAATCAGGTATGCAATTG+TGG 0.492239 7_1:+49283494 Msa1022660:intron
CGGAGTGGATAATGCTATCA+AGG 0.492998 7_1:+49285733 Msa1022660:CDS
ACTGGTGGAACCCGAGGCAT+AGG 0.498705 7_1:+49283377 Msa1022660:CDS
TGTTCCTAGTCAGTGTGACT+TGG 0.501940 7_1:-49283280 None:intergenic
ATGTGTTCTCCTATTTGTTG+CGG 0.511382 7_1:+49286037 Msa1022660:three_prime_UTR
GGCTTTGAGACCTGAAATTG+AGG 0.516922 7_1:-49284726 None:intergenic
CCAAGAACTTAGCATTGGAA+TGG 0.520563 7_1:+49284905 Msa1022660:CDS
CAAGAACTTAGCATTGGAAT+GGG 0.525445 7_1:+49284906 Msa1022660:CDS
AGTAAGGTCATCACAGGTCC+AGG 0.529196 7_1:-49284961 None:intergenic
GAGAACTGACCCTATGCCTC+GGG 0.531174 7_1:-49283387 None:intergenic
TCATCAGTATTATCTAAGAT+GGG 0.531379 7_1:-49284596 None:intergenic
CAAACACCTAGTGGTCGGAT+TGG 0.531397 7_1:+49285767 Msa1022660:CDS
ACCTAAAGATATATCAGCAT+TGG 0.531601 7_1:+49285793 Msa1022660:CDS
ACTGTTAGGTAAACAATGCT+GGG 0.538511 7_1:+49284558 Msa1022660:intron
CCGGTTATGTGTGAAGAAGC+TGG 0.541993 7_1:-49285833 None:intergenic
GGTTCTCCAATCCGACCACT+AGG 0.544965 7_1:-49285773 None:intergenic
ATGCACCAAGAACTTAGCAT+TGG 0.554507 7_1:+49284900 Msa1022660:CDS
TTGAAAGAATGGAAAGGCAA+AGG 0.557601 7_1:+49283585 Msa1022660:CDS
TCCAAAAGTAAGGTCATCAC+AGG 0.566176 7_1:-49284967 None:intergenic
CTTAGCATTGGAATGGGCAA+AGG 0.572011 7_1:+49284912 Msa1022660:CDS
AGAGAACTGACCCTATGCCT+CGG 0.576626 7_1:-49283388 None:intergenic
GCAGCTTCAAAGATCAAAGA+TGG 0.579135 7_1:+49283327 Msa1022660:CDS
TAATATTCGTGCTAATGTTG+TGG 0.584061 7_1:+49284936 Msa1022660:CDS
ACAACCAAGTCACACTGACT+AGG 0.587408 7_1:+49283276 Msa1022660:CDS
GCTGCATAGACAGAAACAAA+AGG 0.589616 7_1:-49284752 None:intergenic
GATCAAAGATGGTCACTCCA+AGG 0.595452 7_1:+49283338 Msa1022660:CDS
GGACAAATTATAGCAGCAGA+TGG 0.598661 7_1:+49285854 Msa1022660:CDS
CTGGTGGAACCCGAGGCATA+GGG 0.613722 7_1:+49283378 Msa1022660:CDS
CAAATTATAGCAGCAGATGG+AGG 0.615495 7_1:+49285857 Msa1022660:CDS
GTATGTTTAATGTTAGGTGA+TGG 0.622006 7_1:+49286070 Msa1022660:three_prime_UTR
CTTGATAGCATTATCCACTC+CGG 0.625119 7_1:-49285732 None:intergenic
CTAGTAACTGGTGGAACCCG+AGG 0.629591 7_1:+49283371 Msa1022660:CDS
ATAGACAGAAACAAAAGGCA+AGG 0.644062 7_1:-49284747 None:intergenic
AAATGTTTGAAAGAATGGAA+AGG 0.648117 7_1:+49283579 Msa1022660:CDS
TGTCTCAAACACCTAGTGGT+CGG 0.653560 7_1:+49285762 Msa1022660:CDS
ATAGTGTCTCAAACACCTAG+TGG 0.659894 7_1:+49285758 Msa1022660:CDS
ATAGAAATTAGATGCCGGAG+TGG 0.664921 7_1:+49285718 Msa1022660:intron
ATGACAGCTCTAGTAACTGG+TGG 0.670365 7_1:+49283362 Msa1022660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTATTTTTTAAAAT+AGG - chr7_1:49285301-49285320 None:intergenic 0.0%
!! ATTAGACAAAAAAAAAAAAA+AGG - chr7_1:49283939-49283958 None:intergenic 10.0%
!!! TAAATTTTTTATATTTTTGG+TGG + chr7_1:49284325-49284344 Msa1022660:intron 10.0%
!! TATTTGAACAAATAAAAAGT+TGG - chr7_1:49283235-49283254 None:intergenic 15.0%
!!! TAATCATTCAAATTTGATTT+TGG + chr7_1:49283719-49283738 Msa1022660:intron 15.0%
!!! TTATTAACGTTTTTTTTGAA+AGG + chr7_1:49283868-49283887 Msa1022660:intron 15.0%
!! ATAATTAAAATTACCTTTAG+AGG - chr7_1:49284777-49284796 None:intergenic 15.0%
!!! CTTAAAAGTGATTTTTTTTA+AGG - chr7_1:49285091-49285110 None:intergenic 15.0%
!!! CAAAAAATATTTTTTTGTAG+AGG + chr7_1:49285190-49285209 Msa1022660:intron 15.0%
!!! AATAGGTAATTTAGTTTTTT+TGG - chr7_1:49285284-49285303 None:intergenic 15.0%
!! CATAATTTAGAAATTATGTT+TGG - chr7_1:49285378-49285397 None:intergenic 15.0%
!! TTTCTCTTAAAAAAATTAGT+CGG + chr7_1:49285560-49285579 Msa1022660:intron 15.0%
!! TTAACAAATGTTTGAAAGAA+TGG + chr7_1:49283574-49283593 Msa1022660:CDS 20.0%
!!! AAATTTTTAAAAACCCACAA+TGG + chr7_1:49283841-49283860 Msa1022660:intron 20.0%
!!! CAGTTGACTTTATTATAAAA+TGG - chr7_1:49284154-49284173 None:intergenic 20.0%
!!! TTTTTTTTTTAGAGGATAGT+AGG - chr7_1:49284295-49284314 None:intergenic 20.0%
!!! TAGCAAGATTTTTTTTTTAG+AGG - chr7_1:49284303-49284322 None:intergenic 20.0%
!! TTCTCTTAAAAAAATTAGTC+GGG + chr7_1:49285561-49285580 Msa1022660:intron 20.0%
!!! TTTTTATAGAAATTAGATGC+CGG + chr7_1:49285713-49285732 Msa1022660:intron 20.0%
!!! TTTTTCTTTTCAAAGAGTTT+AGG + chr7_1:49285977-49285996 Msa1022660:three_prime_UTR 20.0%
! AATTCAAAGTTATGATTGTG+TGG - chr7_1:49283202-49283221 None:intergenic 25.0%
!! TCTTTTGTGAATAATCAATC+AGG + chr7_1:49283481-49283500 Msa1022660:intron 25.0%
! AAATGTTTGAAAGAATGGAA+AGG + chr7_1:49283579-49283598 Msa1022660:CDS 25.0%
! TTATACAATCAAAACAAAGC+AGG + chr7_1:49283787-49283806 Msa1022660:intron 25.0%
! TATACAATCAAAACAAAGCA+GGG + chr7_1:49283788-49283807 Msa1022660:intron 25.0%
! CGTTAATAAAATACCATTGT+GGG - chr7_1:49283857-49283876 None:intergenic 25.0%
! ACGTTAATAAAATACCATTG+TGG - chr7_1:49283858-49283877 None:intergenic 25.0%
! ACAATCATTGTAATATGCAT+TGG - chr7_1:49284033-49284052 None:intergenic 25.0%
! AATGCTAATAAATGTCCTTA+AGG - chr7_1:49284213-49284232 None:intergenic 25.0%
!!! TACAATTAAAAAGAGCACTA+AGG - chr7_1:49284384-49284403 None:intergenic 25.0%
!!! CTCTTTTTAATTGTACCATT+GGG + chr7_1:49284389-49284408 Msa1022660:intron 25.0%
! ATTGAATTTCTCAAACTGTT+AGG + chr7_1:49284544-49284563 Msa1022660:intron 25.0%
!! TCATCAGTATTATCTAAGAT+GGG - chr7_1:49284599-49284618 None:intergenic 25.0%
! TTCATCAGTATTATCTAAGA+TGG - chr7_1:49284600-49284619 None:intergenic 25.0%
! GAAGATATAACAACTACAAT+TGG + chr7_1:49284617-49284636 Msa1022660:CDS 25.0%
!!! ATCGAGATGCTTTTAAAAAA+GGG - chr7_1:49284685-49284704 None:intergenic 25.0%
!!! TATCGAGATGCTTTTAAAAA+AGG - chr7_1:49284686-49284705 None:intergenic 25.0%
!!! TTTTTAAAAGCATCTCGATA+TGG + chr7_1:49284686-49284705 Msa1022660:CDS 25.0%
!!! ATTCCTATTTCTATCTATGT+AGG + chr7_1:49284865-49284884 Msa1022660:intron 25.0%
! AGGATACAAAAGTTCAAATT+AGG - chr7_1:49285648-49285667 None:intergenic 25.0%
! CATTATAGCTAAAGCATAAA+AGG - chr7_1:49285668-49285687 None:intergenic 25.0%
! ATGCATGTATGTTTAATGTT+AGG + chr7_1:49286064-49286083 Msa1022660:three_prime_UTR 25.0%
! TTTAGGTAACTGTACTAAAT+CGG + chr7_1:49286098-49286117 Msa1022660:three_prime_UTR 25.0%
TTTCATGTGAAGAATATTGC+TGG - chr7_1:49283112-49283131 None:intergenic 30.0%
ACTGACTAGGAACAAAAATA+TGG + chr7_1:49283289-49283308 Msa1022660:CDS 30.0%
TCTCTAATGAGAACATGTAA+TGG + chr7_1:49283426-49283445 Msa1022660:intron 30.0%
! TTTCCATCAATTTTTCACGT+TGG - chr7_1:49283653-49283672 None:intergenic 30.0%
ATACAATCAAAACAAAGCAG+GGG + chr7_1:49283789-49283808 Msa1022660:intron 30.0%
ACCCTTAAAGGTGAATAAAT+AGG + chr7_1:49283985-49284004 Msa1022660:intron 30.0%
CCCTATTTATTCACCTTTAA+GGG - chr7_1:49283989-49284008 None:intergenic 30.0%
CCCTTAAAGGTGAATAAATA+GGG + chr7_1:49283986-49284005 Msa1022660:intron 30.0%
TCCCTATTTATTCACCTTTA+AGG - chr7_1:49283990-49284009 None:intergenic 30.0%
ATCAATTGAGTTATGCTCAA+AGG + chr7_1:49284057-49284076 Msa1022660:intron 30.0%
TCAATTGAGTTATGCTCAAA+GGG + chr7_1:49284058-49284077 Msa1022660:intron 30.0%
!!! GATTTAGTTTTGTTGAGACA+TGG + chr7_1:49284173-49284192 Msa1022660:intron 30.0%
!! GCTCTTTTTAATTGTACCAT+TGG + chr7_1:49284388-49284407 Msa1022660:intron 30.0%
! GTATTATCTAAGATGGGTTT+AGG - chr7_1:49284593-49284612 None:intergenic 30.0%
GTATACATATCCTCAATTTC+AGG + chr7_1:49284716-49284735 Msa1022660:CDS 30.0%
TAATATTCGTGCTAATGTTG+TGG + chr7_1:49284936-49284955 Msa1022660:CDS 30.0%
TTACGTTAAACAAACGCAAA+AGG + chr7_1:49285321-49285340 Msa1022660:intron 30.0%
AGTTCAAATTAGGCCAAATT+AGG - chr7_1:49285638-49285657 None:intergenic 30.0%
ACCTAAAGATATATCAGCAT+TGG + chr7_1:49285793-49285812 Msa1022660:CDS 30.0%
ACCAATGCTGATATATCTTT+AGG - chr7_1:49285797-49285816 None:intergenic 30.0%
GTATGTTTAATGTTAGGTGA+TGG + chr7_1:49286070-49286089 Msa1022660:three_prime_UTR 30.0%
CAAAGTTATGATTGTGTGGT+TGG - chr7_1:49283198-49283217 None:intergenic 35.0%
ATCAATCAGGTATGCAATTG+TGG + chr7_1:49283494-49283513 Msa1022660:intron 35.0%
TTGAAAGAATGGAAAGGCAA+AGG + chr7_1:49283585-49283604 Msa1022660:CDS 35.0%
TGACCAACGTGAAAAATTGA+TGG + chr7_1:49283647-49283666 Msa1022660:CDS 35.0%
ACAGTAGCTTCAATCTTTCA+AGG + chr7_1:49283672-49283691 Msa1022660:CDS 35.0%
!! ACCTTTAAGGGTTGATTTTC+CGG - chr7_1:49283977-49283996 None:intergenic 35.0%
!! AAAGTTGCAACATTTTGACG+GGG - chr7_1:49284419-49284438 None:intergenic 35.0%
!! CAAAGTTGCAACATTTTGAC+GGG - chr7_1:49284420-49284439 None:intergenic 35.0%
! GCAAAGTTGCAACATTTTGA+CGG - chr7_1:49284421-49284440 None:intergenic 35.0%
AACTGTTAGGTAAACAATGC+TGG + chr7_1:49284557-49284576 Msa1022660:intron 35.0%
ACTGTTAGGTAAACAATGCT+GGG + chr7_1:49284558-49284577 Msa1022660:intron 35.0%
! ATTGGTACCAATTTTGTGTC+TGG + chr7_1:49284635-49284654 Msa1022660:CDS 35.0%
ATGGTAACCAGACACAAAAT+TGG - chr7_1:49284645-49284664 None:intergenic 35.0%
! TTAAAAAAGGGTGTGCAAGT+TGG - chr7_1:49284673-49284692 None:intergenic 35.0%
ATAGACAGAAACAAAAGGCA+AGG - chr7_1:49284750-49284769 None:intergenic 35.0%
TCTGCAAAGTTGCAAGTTAA+AGG - chr7_1:49284817-49284836 None:intergenic 35.0%
GCTCCTACATAGATAGAAAT+AGG - chr7_1:49284871-49284890 None:intergenic 35.0%
! CAAGAACTTAGCATTGGAAT+GGG + chr7_1:49284906-49284925 Msa1022660:CDS 35.0%
CATAGTTGTCTCCAAAAGTA+AGG - chr7_1:49284980-49284999 None:intergenic 35.0%
!! CTTACTTTTGGAGACAACTA+TGG + chr7_1:49284978-49284997 Msa1022660:CDS 35.0%
ATATGTAACAAACACGCTCT+TGG + chr7_1:49285423-49285442 Msa1022660:intron 35.0%
AAGTGTTCACGTATTGAGAA+GGG + chr7_1:49285464-49285483 Msa1022660:intron 35.0%
CTAAATTGCCATGCCTAATT+TGG + chr7_1:49285622-49285641 Msa1022660:intron 35.0%
AAATTAGGCCAAATTAGGCA+TGG - chr7_1:49285633-49285652 None:intergenic 35.0%
! ATCTGCTGCTATAATTTGTC+CGG - chr7_1:49285855-49285874 None:intergenic 35.0%
! ATGTGTTCTCCTATTTGTTG+CGG + chr7_1:49286037-49286056 Msa1022660:three_prime_UTR 35.0%
GCAGCTTCAAAGATCAAAGA+TGG + chr7_1:49283327-49283346 Msa1022660:CDS 40.0%
TTACTAGAGCTGTCATTCCT+TGG - chr7_1:49283358-49283377 None:intergenic 40.0%
GTGGAAGAGTTAGCAGAATT+TGG + chr7_1:49283513-49283532 Msa1022660:CDS 40.0%
!! TAATTGACTAGCTTAGTGCC+CGG + chr7_1:49283955-49283974 Msa1022660:intron 40.0%
!! CCTTTAAGGGTTGATTTTCC+GGG - chr7_1:49283976-49283995 None:intergenic 40.0%
GCTTCTTATCAAGTGCCTTA+AGG + chr7_1:49284195-49284214 Msa1022660:intron 40.0%
GCTGCATAGACAGAAACAAA+AGG - chr7_1:49284755-49284774 None:intergenic 40.0%
!! GTTCTTGGTGCATTGATTCA+TGG - chr7_1:49284893-49284912 None:intergenic 40.0%
ATGCACCAAGAACTTAGCAT+TGG + chr7_1:49284900-49284919 Msa1022660:CDS 40.0%
CCATTCCAATGCTAAGTTCT+TGG - chr7_1:49284908-49284927 None:intergenic 40.0%
! CCAAGAACTTAGCATTGGAA+TGG + chr7_1:49284905-49284924 Msa1022660:CDS 40.0%
! ACCTGTGATGACCTTACTTT+TGG + chr7_1:49284966-49284985 Msa1022660:CDS 40.0%
TCCAAAAGTAAGGTCATCAC+AGG - chr7_1:49284970-49284989 None:intergenic 40.0%
ACTTAGCGTCTGTCTGTTAT+AGG + chr7_1:49285046-49285065 Msa1022660:intron 40.0%
CTTCTCAATACGTGAACACT+TGG - chr7_1:49285465-49285484 None:intergenic 40.0%
CAAGTGTTCACGTATTGAGA+AGG + chr7_1:49285463-49285482 Msa1022660:intron 40.0%
ATAGAAATTAGATGCCGGAG+TGG + chr7_1:49285718-49285737 Msa1022660:intron 40.0%
! CTTGATAGCATTATCCACTC+CGG - chr7_1:49285735-49285754 None:intergenic 40.0%
ATAGTGTCTCAAACACCTAG+TGG + chr7_1:49285758-49285777 Msa1022660:CDS 40.0%
GGACAAATTATAGCAGCAGA+TGG + chr7_1:49285854-49285873 Msa1022660:CDS 40.0%
CAAATTATAGCAGCAGATGG+AGG + chr7_1:49285857-49285876 Msa1022660:CDS 40.0%
! GTTAGGTGATGGTCGAATTT+AGG + chr7_1:49286081-49286100 Msa1022660:three_prime_UTR 40.0%
! ACAACCAAGTCACACTGACT+AGG + chr7_1:49283276-49283295 Msa1022660:CDS 45.0%
TGTTCCTAGTCAGTGTGACT+TGG - chr7_1:49283283-49283302 None:intergenic 45.0%
GATCAAAGATGGTCACTCCA+AGG + chr7_1:49283338-49283357 Msa1022660:CDS 45.0%
! GGAATGACAGCTCTAGTAAC+TGG + chr7_1:49283359-49283378 Msa1022660:CDS 45.0%
! ATGACAGCTCTAGTAACTGG+TGG + chr7_1:49283362-49283381 Msa1022660:CDS 45.0%
! GGCAAAGGATTTTGTGTGAC+AGG + chr7_1:49283600-49283619 Msa1022660:CDS 45.0%
CCCGGAAAATCAACCCTTAA+AGG + chr7_1:49283973-49283992 Msa1022660:intron 45.0%
!! GGCTTTGAGACCTGAAATTG+AGG - chr7_1:49284729-49284748 None:intergenic 45.0%
TCTGTCTATGCAGCCTCTAA+AGG + chr7_1:49284761-49284780 Msa1022660:CDS 45.0%
! CTTAGCATTGGAATGGGCAA+AGG + chr7_1:49284912-49284931 Msa1022660:CDS 45.0%
TAACAAACACGCTCTTGGTG+TGG + chr7_1:49285428-49285447 Msa1022660:intron 45.0%
CGGAGTGGATAATGCTATCA+AGG + chr7_1:49285733-49285752 Msa1022660:CDS 45.0%
TGTCTCAAACACCTAGTGGT+CGG + chr7_1:49285762-49285781 Msa1022660:CDS 45.0%
CCAGCTTCTTCACACATAAC+CGG + chr7_1:49285833-49285852 Msa1022660:CDS 45.0%
TGCATCAGTCCGCAACAAAT+AGG - chr7_1:49286049-49286068 None:intergenic 45.0%
!!! AACTAAATTTTTTATATTTT+TGG + chr7_1:49284322-49284341 Msa1022660:intron 5.0%
AGAGAACTGACCCTATGCCT+CGG - chr7_1:49283391-49283410 None:intergenic 50.0%
!!! ACAAAGCAGGGGCTAGCTTT+TGG + chr7_1:49283800-49283819 Msa1022660:intron 50.0%
!! TTGCAACATTTTGACGGGGC+TGG - chr7_1:49284415-49284434 None:intergenic 50.0%
! GGTGTGCAAGTTGGCACAAA+TGG - chr7_1:49284664-49284683 None:intergenic 50.0%
AGTAAGGTCATCACAGGTCC+AGG - chr7_1:49284964-49284983 None:intergenic 50.0%
CAGACAGACGCTAAGTGAAG+AGG - chr7_1:49285042-49285061 None:intergenic 50.0%
CAAACACCTAGTGGTCGGAT+TGG + chr7_1:49285767-49285786 Msa1022660:CDS 50.0%
CCGGTTATGTGTGAAGAAGC+TGG - chr7_1:49285836-49285855 None:intergenic 50.0%
CTAGTAACTGGTGGAACCCG+AGG + chr7_1:49283371-49283390 Msa1022660:CDS 55.0%
GAGAACTGACCCTATGCCTC+GGG - chr7_1:49283390-49283409 None:intergenic 55.0%
CGTGCTAATGTTGTGGCTCC+TGG + chr7_1:49284943-49284962 Msa1022660:CDS 55.0%
! ACACGCTCTTGGTGTGGCAA+AGG + chr7_1:49285434-49285453 Msa1022660:intron 55.0%
GGTTCTCCAATCCGACCACT+AGG - chr7_1:49285776-49285795 None:intergenic 55.0%
ACTGGTGGAACCCGAGGCAT+AGG + chr7_1:49283377-49283396 Msa1022660:CDS 60.0%
CTGGTGGAACCCGAGGCATA+GGG + chr7_1:49283378-49283397 Msa1022660:CDS 60.0%
!!! TTTTGACGGGGCTGGCCCAA+TGG - chr7_1:49284407-49284426 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 49283080 49286160 49283080 ID=Msa1022660;Name=Msa1022660
chr7_1 mRNA 49283080 49286160 49283080 ID=Msa1022660-mRNA-1;Parent=Msa1022660;Name=Msa1022660-mRNA-1;_AED=0.22;_eAED=0.22;_QI=16|1|1|1|0.8|0.66|6|268|307
chr7_1 exon 49283080 49283130 49283080 ID=Msa1022660-mRNA-1:exon:9619;Parent=Msa1022660-mRNA-1
chr7_1 exon 49283220 49283399 49283220 ID=Msa1022660-mRNA-1:exon:9620;Parent=Msa1022660-mRNA-1
chr7_1 exon 49283503 49283710 49283503 ID=Msa1022660-mRNA-1:exon:9621;Parent=Msa1022660-mRNA-1
chr7_1 exon 49284566 49284782 49284566 ID=Msa1022660-mRNA-1:exon:9622;Parent=Msa1022660-mRNA-1
chr7_1 exon 49284887 49284999 49284887 ID=Msa1022660-mRNA-1:exon:9623;Parent=Msa1022660-mRNA-1
chr7_1 exon 49285722 49286160 49285722 ID=Msa1022660-mRNA-1:exon:9624;Parent=Msa1022660-mRNA-1
chr7_1 five_prime_UTR 49283080 49283095 49283080 ID=Msa1022660-mRNA-1:five_prime_utr;Parent=Msa1022660-mRNA-1
chr7_1 CDS 49283096 49283130 49283096 ID=Msa1022660-mRNA-1:cds;Parent=Msa1022660-mRNA-1
chr7_1 CDS 49283220 49283399 49283220 ID=Msa1022660-mRNA-1:cds;Parent=Msa1022660-mRNA-1
chr7_1 CDS 49283503 49283710 49283503 ID=Msa1022660-mRNA-1:cds;Parent=Msa1022660-mRNA-1
chr7_1 CDS 49284566 49284782 49284566 ID=Msa1022660-mRNA-1:cds;Parent=Msa1022660-mRNA-1
chr7_1 CDS 49284887 49284999 49284887 ID=Msa1022660-mRNA-1:cds;Parent=Msa1022660-mRNA-1
chr7_1 CDS 49285722 49285892 49285722 ID=Msa1022660-mRNA-1:cds;Parent=Msa1022660-mRNA-1
chr7_1 three_prime_UTR 49285893 49286160 49285893 ID=Msa1022660-mRNA-1:three_prime_utr;Parent=Msa1022660-mRNA-1
Gene Sequence

>Msa1022660

ATGATAACAATATCCAGCAATATTCTTCACATGAATTTTGTTTGTATCCAACTTTTTATTTGTTCAAATATTTCAGCTATTTTTCAAATTCACAACCAAGTCACACTGACTAGGAACAAAAATATGGCAGAAACAAAGTTGAGCAGCTTCAAAGATCAAAGATGGTCACTCCAAGGAATGACAGCTCTAGTAACTGGTGGAACCCGAGGCATAGGGTATGCAATTGTGGAAGAGTTAGCAGAATTTGGAGCAAGTGTGCATATATGTTCACGAAATCAAGAAGATATTAACAAATGTTTGAAAGAATGGAAAGGCAAAGGATTTTGTGTGACAGGCTCAACTTGTGATTTATTGTTGCGTGACCAACGTGAAAAATTGATGGAAACAGTAGCTTCAATCTTTCAAGGAAAACTCAATATTCTAGTAAACAATGCTGGGATATTTGCTCCTAAACCCATCTTAGATAATACTGATGAAGATATAACAACTACAATTGGTACCAATTTTGTGTCTGGTTACCATTTGTGCCAACTTGCACACCCTTTTTTAAAAGCATCTCGATATGGAAGCATAGTATACATATCCTCAATTTCAGGTCTCAAAGCCTTGCCTTTTGTTTCTGTCTATGCAGCCTCTAAAGGAGCCATGAATCAATGCACCAAGAACTTAGCATTGGAATGGGCAAAGGATAATATTCGTGCTAATGTTGTGGCTCCTGGACCTGTGATGACCTTACTTTTGGAGACAACTATGAAATTAGATGCCGGAGTGGATAATGCTATCAAGGATATAGTGTCTCAAACACCTAGTGGTCGGATTGGAGAACCTAAAGATATATCAGCATTGGTTGCTTTTCTTTGTCTTCCAGCTTCTTCACACATAACCGGACAAATTATAGCAGCAGATGGAGGCTTCACTATTTAA

Protein sequence

>Msa1022660

MITISSNILHMNFVCIQLFICSNISAIFQIHNQVTLTRNKNMAETKLSSFKDQRWSLQGMTALVTGGTRGIGYAIVEELAEFGASVHICSRNQEDINKCLKEWKGKGFCVTGSTCDLLLRDQREKLMETVASIFQGKLNILVNNAGIFAPKPILDNTDEDITTTIGTNFVSGYHLCQLAHPFLKASRYGSIVYISSISGLKALPFVSVYAASKGAMNQCTKNLALEWAKDNIRANVVAPGPVMTLLLETTMKLDAGVDNAIKDIVSQTPSGRIGEPKDISALVAFLCLPASSHITGQIIAADGGFTI*