AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0335860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335860 MtrunA17_Chr2g0321131 88.252 349 29 3 168 504 46 394 0.0 627
Msa0335860 MtrunA17_Chr2g0321131 95.495 111 4 1 1 111 1 110 8.46e-67 220
Msa0335860 MtrunA17_Chr3g0095421 24.930 357 202 17 171 491 33 359 3.83e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335860 AT2G27680.1 77.077 349 68 3 166 503 36 383 0.0 567
Msa0335860 AT2G27680.1 76.923 65 15 0 47 111 36 100 8.20e-28 115
Msa0335860 AT1G06690.1 26.351 296 167 12 180 443 49 325 1.72e-14 75.5
Msa0335860 AT5G53580.1 23.019 265 162 10 203 441 63 311 2.12e-11 65.9

Find 120 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTACTGAGACAAAAT+TGG 0.233783 2_4:+55060943 None:intergenic
GAAATATGTAGAGTTCTTAA+TGG 0.252504 2_4:-55065125 Msa0335860:CDS
GCAGAGCTTTGTCAGCTTAC+AGG 0.253188 2_4:-55061890 Msa0335860:CDS
TAAAGACAAAAGAAACAAAA+AGG 0.317670 2_4:-55060881 Msa0335860:three_prime_UTR
GTTGCAATTCCTGTTCTTGT+TGG 0.329248 2_4:+55063629 None:intergenic
GTGGATGCTTGGGGAGGATG+GGG 0.330296 2_4:-55061464 Msa0335860:CDS
ATTCTACCCCTCTTGTTGTT+TGG 0.340565 2_4:-55062601 Msa0335860:CDS
ATGGCAGATGGTGGATGCTT+GGG 0.345508 2_4:-55061474 Msa0335860:intron
TATGCGTCCCCAACAGAAAA+TGG 0.349887 2_4:-55061912 Msa0335860:CDS
GCGGATGGGGCAAAATTGAT+AGG 0.358296 2_4:-55063475 Msa0335860:CDS
AAGCTACTTGTCATCTTAAC+TGG 0.362897 2_4:+55062704 None:intergenic
GGTGGATGCTTGGGGAGGAT+GGG 0.363054 2_4:-55061465 Msa0335860:CDS
GTGGCAGACAAGTGGTGGTT+GGG 0.363851 2_4:-55065099 Msa0335860:CDS
GGGCCAGCTGAAGATCTATA+TGG 0.364721 2_4:-55062983 Msa0335860:CDS
TGGTGGATGCTTGGGGAGGA+TGG 0.377292 2_4:-55061466 Msa0335860:CDS
AAGAAGATGTAAACAGCATA+AGG 0.390321 2_4:-55061131 Msa0335860:CDS
AAGGATCTTCTTAAAGTGAT+TGG 0.395916 2_4:-55061090 Msa0335860:CDS
CATCCCTCTCAAAATACAAA+AGG 0.396975 2_4:-55061652 Msa0335860:CDS
AGGGATGGAGTATTTATTGC+AGG 0.412390 2_4:+55061668 None:intergenic
CAGTAATGGGAAGGATTCAT+TGG 0.414164 2_4:-55063537 Msa0335860:CDS
CGGCGCATTGTGGTCAGTAA+TGG 0.422536 2_4:-55063551 Msa0335860:CDS
TTTATTGCAGGTCCAGCAAA+AGG 0.427415 2_4:+55061680 None:intergenic
CATGGCAGATGGTGGATGCT+TGG 0.430168 2_4:-55061475 Msa0335860:intron
CAATGCGCCGATTATCCTCC+TGG 0.430412 2_4:+55063564 None:intergenic
GAGAATGGACGTGGAATCCT+TGG 0.433488 2_4:-55062651 Msa0335860:CDS
GGTTCTCTGTGAGTGGGGAT+TGG 0.441664 2_4:+55065259 None:intergenic
GTTGTTGAAGCGAGTGAAAG+TGG 0.443100 2_4:+55065292 None:intergenic
ATGCTCCGGTATGCTGATTC+CGG 0.449274 2_4:-55065044 Msa0335860:CDS
AACAGAACACCAACAAGAAC+AGG 0.449611 2_4:-55063638 Msa0335860:CDS
TGACTACCCAGGAGGATAAT+CGG 0.450628 2_4:-55063571 Msa0335860:CDS
AAGAATAATTTGTAATCTCT+CGG 0.452147 2_4:+55062073 None:intergenic
TCGAATCAATCTTGCGCTGT+TGG 0.455461 2_4:+55065238 None:intergenic
GGCGCATTGTGGTCAGTAAT+GGG 0.456036 2_4:-55063550 Msa0335860:CDS
GGAGGATGGGGTTTGTTCCA+AGG 0.459555 2_4:-55061452 Msa0335860:CDS
TGCAGGTATGGGACAGTAAT+GGG 0.460926 2_4:-55061746 Msa0335860:intron
AACCTGCAGCCTGCTGTAGC+AGG 0.462590 2_4:-55061231 Msa0335860:intron
CCTTCTACTGAGACAAAATT+GGG 0.465236 2_4:+55060944 None:intergenic
CGCTGTTGGTTCTCTGTGAG+TGG 0.468927 2_4:+55065252 None:intergenic
TAAGAGTTCGAAGAAGTCCT+TGG 0.474989 2_4:+55061435 None:intergenic
TGGCAAACGAGTGGCGGATG+GGG 0.475308 2_4:-55063488 Msa0335860:CDS
ATGCTTAAATACGCTGATGC+TGG 0.478840 2_4:-55063434 Msa0335860:CDS
TGGATATGCTTCAGTTCCAC+TGG 0.481674 2_4:-55062631 Msa0335860:CDS
AGCGAGTGAAAGTGGAGAAT+AGG 0.486717 2_4:+55065300 None:intergenic
GATATAACTCGGGTTGTGAA+TGG 0.486800 2_4:-55063515 Msa0335860:CDS
TGTGGCAGACAAGTGGTGGT+TGG 0.493594 2_4:-55065100 Msa0335860:CDS
GCTGTTGGTTCTCTGTGAGT+GGG 0.496090 2_4:+55065253 None:intergenic
GTGGCAAACGAGTGGCGGAT+GGG 0.497300 2_4:-55063489 Msa0335860:CDS
TGTGGCAAACGAGTGGCGGA+TGG 0.498373 2_4:-55063490 Msa0335860:CDS
GATTCCCATTGTGAGCAATC+AGG 0.502650 2_4:-55062042 Msa0335860:intron
GAGTAACGGAAACGATTCAT+TGG 0.507063 2_4:-55065147 Msa0335860:CDS
TCTACCTGATTGCTCACAAT+GGG 0.509738 2_4:+55062038 None:intergenic
TGGCAGACAAGTGGTGGTTG+GGG 0.516858 2_4:-55065098 Msa0335860:CDS
ATCCCTCTCAAAATACAAAA+GGG 0.521470 2_4:-55061651 Msa0335860:intron
TATATCAGCCATATCAAAAG+TGG 0.522765 2_4:+55063406 None:intergenic
CTTAAAGTGATTGGTGATTG+TGG 0.523513 2_4:-55061081 Msa0335860:CDS
GGCCAGCTGAAGATCTATAT+GGG 0.529176 2_4:-55062982 Msa0335860:CDS
TAATGTGTCAAGGAAGAGAA+TGG 0.530921 2_4:-55062666 Msa0335860:CDS
TTTGATACAGTCTCACTAAG+TGG 0.532426 2_4:-55062736 Msa0335860:intron
ACCATTGATCCTGCTACAGC+AGG 0.539745 2_4:+55061222 None:intergenic
GGATGTTTATGTTGGTGTCA+AGG 0.543246 2_4:+55061702 None:intergenic
TTGATACAGTCTCACTAAGT+GGG 0.547124 2_4:-55062735 Msa0335860:intron
AGGATTCATTGGATATAACT+CGG 0.549335 2_4:-55063526 Msa0335860:CDS
AGAAGATGTAAACAGCATAA+GGG 0.550057 2_4:-55061130 Msa0335860:CDS
TGGCAGATGGTGGATGCTTG+GGG 0.552987 2_4:-55061473 Msa0335860:intron
AGCAAAAGGGATGTTTATGT+TGG 0.553357 2_4:+55061694 None:intergenic
TCAATGGTTGGTGTAAGACT+TGG 0.555070 2_4:-55061207 Msa0335860:CDS
GCCTGCTGTAGCAGGATCAA+TGG 0.555540 2_4:-55061223 Msa0335860:CDS
CATGTCGAAGGTAGATAAGC+CGG 0.559207 2_4:+55065025 None:intergenic
CGGCTTATCTACCTTCGACA+TGG 0.566100 2_4:-55065024 Msa0335860:CDS
ATCCCATATAGATCTTCAGC+TGG 0.568807 2_4:+55062980 None:intergenic
CTTGTCATCTTAACTGGCGG+TGG 0.574343 2_4:+55062710 None:intergenic
GGATTCATTGGATATAACTC+GGG 0.575840 2_4:-55063525 Msa0335860:CDS
GAGACAACATTAATGTGTCA+AGG 0.581488 2_4:-55062676 Msa0335860:CDS
AAACAAGTATCTACTAAGCA+TGG 0.581998 2_4:-55061413 Msa0335860:CDS
GCTGTAGCAGGATCAATGGT+TGG 0.583139 2_4:-55061219 Msa0335860:CDS
ATGCAGGTATGGGACAGTAA+TGG 0.585251 2_4:-55061747 Msa0335860:intron
AACAGCATAAGGGAAGCAGC+AGG 0.585347 2_4:-55061120 Msa0335860:CDS
AGCATACACCAAACAACAAG+AGG 0.587468 2_4:+55062593 None:intergenic
ATATACTTCACAGCAACAGT+TGG 0.588134 2_4:+55061380 None:intergenic
GTCAAGGAAGAGAATGGACG+TGG 0.589441 2_4:-55062660 Msa0335860:CDS
GGGCAAAATTGATAGGGATG+AGG 0.592842 2_4:-55063468 Msa0335860:CDS
ATACCGGAGCATAGCTTCAA+CGG 0.594485 2_4:+55065055 None:intergenic
ATAAGGGAAGCAGCAGGGAA+AGG 0.597100 2_4:-55061114 Msa0335860:CDS
GTCTACCTGATTGCTCACAA+TGG 0.599622 2_4:+55062037 None:intergenic
TTGATTCGAATTCGATGCAG+TGG 0.601417 2_4:-55065224 Msa0335860:CDS
TGAAAGTGGAGAATAGGTTG+TGG 0.603049 2_4:+55065306 None:intergenic
TTATTGCAGGTCCAGCAAAA+GGG 0.606364 2_4:+55061681 None:intergenic
ATAAGCCGGAATCAGCATAC+CGG 0.610129 2_4:+55065039 None:intergenic
CAGATGGTGGATGCTTGGGG+AGG 0.612252 2_4:-55061470 Msa0335860:CDS
GTAGAGTTCTTAATGGAATG+TGG 0.613884 2_4:-55065118 Msa0335860:CDS
CGGATGGGGCAAAATTGATA+GGG 0.614424 2_4:-55063474 Msa0335860:CDS
GTGATTGTGGAGATGAGTAC+AGG 0.615695 2_4:-55061068 Msa0335860:CDS
AATGCGCCGATTATCCTCCT+GGG 0.616469 2_4:+55063565 None:intergenic
CATTGTGGTCAGTAATGGGA+AGG 0.617606 2_4:-55063546 Msa0335860:CDS
GTATTTAAGCATAGAGTCAA+CGG 0.619191 2_4:+55063445 None:intergenic
GCATACACCAAACAACAAGA+GGG 0.619495 2_4:+55062594 None:intergenic
TGGGTAGTCACACACTGACA+TGG 0.621295 2_4:+55063584 None:intergenic
ACGCCGTTGAAGCTATGCTC+CGG 0.621896 2_4:-55065058 Msa0335860:CDS
GGAGGATAATCGGCGCATTG+TGG 0.623021 2_4:-55063561 Msa0335860:CDS
GCTTGAAGATACCACTGCCA+TGG 0.626100 2_4:+55065328 None:intergenic
CTGTTGGTTCTCTGTGAGTG+GGG 0.634903 2_4:+55065254 None:intergenic
TCAATCGAGTTCGTCGTGAG+CGG 0.637046 2_4:-55062952 Msa0335860:CDS
GGGTAGAATTTAAATACCAG+TGG 0.638181 2_4:+55062615 None:intergenic
GGAAGCAGCAGGGAAAGGCA+AGG 0.645795 2_4:-55061109 Msa0335860:CDS
GTGGAACTGAAGCATATCCA+AGG 0.649456 2_4:+55062634 None:intergenic
GGCAGACAAGTGGTGGTTGG+GGG 0.649705 2_4:-55065097 Msa0335860:CDS
ACAGCATAAGGGAAGCAGCA+GGG 0.652098 2_4:-55061119 Msa0335860:CDS
CAGCGAGTGAAACTGAGTAA+CGG 0.654769 2_4:-55065161 Msa0335860:CDS
GGAATGTGGCAAACGAGTGG+CGG 0.659714 2_4:-55063494 Msa0335860:CDS
TGTGAAGTATATACTAGACC+AGG 0.663396 2_4:-55061369 Msa0335860:intron
ATGTCAGTGTGTGACTACCC+AGG 0.665991 2_4:-55063582 Msa0335860:CDS
CTACTTGTCATCTTAACTGG+CGG 0.666369 2_4:+55062707 None:intergenic
ACAGTGATCAGCCATGTCGA+AGG 0.668855 2_4:+55065013 None:intergenic
CTCGGGTTGTGAATGGAATG+TGG 0.682270 2_4:-55063508 Msa0335860:CDS
GGAATGTGGCAGACAAGTGG+TGG 0.686815 2_4:-55065104 Msa0335860:CDS
AATGGAATGTGGCAAACGAG+TGG 0.701010 2_4:-55063497 Msa0335860:CDS
AATGGAATGTGGCAGACAAG+TGG 0.706632 2_4:-55065107 Msa0335860:CDS
CATACACCAAACAACAAGAG+GGG 0.726941 2_4:+55062595 None:intergenic
AGGTATGGGACAGTAATGGG+TGG 0.729235 2_4:-55061743 Msa0335860:CDS
TCAGTGTGTGACTACCCAGG+AGG 0.784654 2_4:-55063579 Msa0335860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGTTACAAAAA+TGG - chr2_4:55061463-55061482 Msa0335860:CDS 10.0%
!!! TTTTTTTTTGTTACAAAAAT+GGG - chr2_4:55061464-55061483 Msa0335860:CDS 10.0%
!!! AACTTTTAAAGAATAAAATA+TGG + chr2_4:55062088-55062107 None:intergenic 10.0%
!! TCATATATATTTCATATATA+TGG - chr2_4:55062266-55062285 Msa0335860:intron 10.0%
!!! ATGAAATTATTTTTTAAATG+GGG + chr2_4:55064286-55064305 None:intergenic 10.0%
!!! GATGAAATTATTTTTTAAAT+GGG + chr2_4:55064287-55064306 None:intergenic 10.0%
!!! TGATGAAATTATTTTTTAAA+TGG + chr2_4:55064288-55064307 None:intergenic 10.0%
!!! TTTTTTTTGTTACAAAAATG+GGG - chr2_4:55061465-55061484 Msa0335860:CDS 15.0%
!!! AGTCAAATTCTTAAATTTTA+TGG - chr2_4:55061917-55061936 Msa0335860:CDS 15.0%
!!! AGCAATTTGATTTTTATTTT+TGG - chr2_4:55062217-55062236 Msa0335860:intron 15.0%
!!! AACAAAGACAATTTTTTTAT+GGG + chr2_4:55062812-55062831 None:intergenic 15.0%
!!! AAACAAAGACAATTTTTTTA+TGG + chr2_4:55062813-55062832 None:intergenic 15.0%
!!! TGAAATTATTTTTTAAATGG+GGG + chr2_4:55064285-55064304 None:intergenic 15.0%
!! ATCTCATATTGATATTAAAT+TGG - chr2_4:55064833-55064852 Msa0335860:intron 15.0%
!!! AAACTTTTTTGTTTTTTGAG+AGG - chr2_4:55061666-55061685 Msa0335860:CDS 20.0%
!!! AACAATTGAATCCTAAATTT+TGG + chr2_4:55061701-55061720 None:intergenic 20.0%
!! ACTTATAAAACCAACATATA+GGG + chr2_4:55061732-55061751 None:intergenic 20.0%
!! AACTTATAAAACCAACATAT+AGG + chr2_4:55061733-55061752 None:intergenic 20.0%
!!! TGAATTTTGTTAAACTGTTT+GGG + chr2_4:55061828-55061847 None:intergenic 20.0%
!! TTAGCAAAACTAATTCAAAA+TGG + chr2_4:55062049-55062068 None:intergenic 20.0%
!!! ATTTTGAATTAGTTTTGCTA+AGG - chr2_4:55062048-55062067 Msa0335860:CDS 20.0%
!! ATGAAAAAATCAAAACAGAA+CGG + chr2_4:55062180-55062199 None:intergenic 20.0%
!! ATATATATGGAAAATAAGAG+TGG - chr2_4:55062279-55062298 Msa0335860:intron 20.0%
!! AATGGATATCATTAACTAAA+TGG + chr2_4:55062950-55062969 None:intergenic 20.0%
!! ATTTAGTTAATGATATCCAT+TGG - chr2_4:55062949-55062968 Msa0335860:CDS 20.0%
!!! TTTTAGTCTGCATAATAAAA+AGG - chr2_4:55063067-55063086 Msa0335860:intron 20.0%
!! ACAATCAAGAATTGTATTAT+CGG + chr2_4:55063322-55063341 None:intergenic 20.0%
!!! TTTTACAATTCTTCATAACA+TGG - chr2_4:55063563-55063582 Msa0335860:CDS 20.0%
!! ATTTATTTCAGTAACATACT+AGG + chr2_4:55063608-55063627 None:intergenic 20.0%
!!! TATGTAGTTGATTTACTTAT+TGG - chr2_4:55063645-55063664 Msa0335860:CDS 20.0%
!!! AAGAATAATTTGTAATCTCT+CGG + chr2_4:55064058-55064077 None:intergenic 20.0%
!! ATTTCACTTTAATCTCATTT+CGG + chr2_4:55064323-55064342 None:intergenic 20.0%
!! TAACTTCAGAAAATTAATGA+TGG + chr2_4:55064516-55064535 None:intergenic 20.0%
!!! TATTTGTTTGATTTTGGTTA+TGG - chr2_4:55064871-55064890 Msa0335860:intron 20.0%
!! AAGATGAAAACATAAAAAGA+AGG - chr2_4:55065148-55065167 Msa0335860:CDS 20.0%
!! AGATGAAAACATAAAAAGAA+GGG - chr2_4:55065149-55065168 Msa0335860:CDS 20.0%
!!! TGTTTCTTTTGTCTTTAAAT+CGG + chr2_4:55065244-55065263 None:intergenic 20.0%
!! TAAAGACAAAAGAAACAAAA+AGG - chr2_4:55065247-55065266 Msa0335860:CDS 20.0%
! GAAATATGTAGAGTTCTTAA+TGG - chr2_4:55061003-55061022 Msa0335860:three_prime_UTR 25.0%
! TCATCAAAGAGAAAAATCTA+AGG + chr2_4:55061217-55061236 None:intergenic 25.0%
! TGATGACTGAAAATTCAATT+TGG - chr2_4:55061281-55061300 Msa0335860:intron 25.0%
!!! GGATTTTTTGTCCAAAATTT+AGG - chr2_4:55061687-55061706 Msa0335860:CDS 25.0%
!! TTTTTGTATACCCTATATGT+TGG - chr2_4:55061719-55061738 Msa0335860:CDS 25.0%
!! CTGAATTTTGTTAAACTGTT+TGG + chr2_4:55061829-55061848 None:intergenic 25.0%
! CAAACAGTTTAACAAAATTC+AGG - chr2_4:55061827-55061846 Msa0335860:intron 25.0%
!!! CTTTAAAGTAAAGAGTCTAA+TGG + chr2_4:55061896-55061915 None:intergenic 25.0%
! ATTTGACAGCAAATATTATG+TGG - chr2_4:55062143-55062162 Msa0335860:intron 25.0%
! CCATATATTTATACTTTACG+TGG + chr2_4:55062307-55062326 None:intergenic 25.0%
! CCACGTAAAGTATAAATATA+TGG - chr2_4:55062304-55062323 Msa0335860:intron 25.0%
! CGTAAAGTATAAATATATGG+TGG - chr2_4:55062307-55062326 Msa0335860:intron 25.0%
!!! AAGACAATTTTTTTATGGGA+AGG + chr2_4:55062808-55062827 None:intergenic 25.0%
!!! ACATCTTTTTCAAGTAGAAA+AGG + chr2_4:55063265-55063284 None:intergenic 25.0%
! AAATTACCATAGAACATAGA+AGG - chr2_4:55063347-55063366 Msa0335860:intron 25.0%
! GACTGTATCAAATAATACAA+TGG + chr2_4:55063384-55063403 None:intergenic 25.0%
!!! CCTAAATTTGTTACAGATAA+AGG + chr2_4:55063716-55063735 None:intergenic 25.0%
! CCTTTATCTGTAACAAATTT+AGG - chr2_4:55063713-55063732 Msa0335860:CDS 25.0%
! TTATCTGTAACAAATTTAGG+TGG - chr2_4:55063716-55063735 Msa0335860:CDS 25.0%
! TATCTGTAACAAATTTAGGT+GGG - chr2_4:55063717-55063736 Msa0335860:CDS 25.0%
! GTTTGCTTAAATCAAGAAAT+GGG + chr2_4:55063977-55063996 None:intergenic 25.0%
!! AGTTTGCTTAAATCAAGAAA+TGG + chr2_4:55063978-55063997 None:intergenic 25.0%
! AGTTTATTTAAACTTACTGC+TGG - chr2_4:55064140-55064159 Msa0335860:intron 25.0%
! AATCAAACAAATATCCAACA+GGG + chr2_4:55064864-55064883 None:intergenic 25.0%
! AAATCAAACAAATATCCAAC+AGG + chr2_4:55064865-55064884 None:intergenic 25.0%
!!! GTTGGATATTTGTTTGATTT+TGG - chr2_4:55064865-55064884 Msa0335860:intron 25.0%
ATGAATACAGAGAAAATGAG+TGG + chr2_4:55061153-55061172 None:intergenic 30.0%
CCAGAGATAAATTAGTTCAT+CGG + chr2_4:55061340-55061359 None:intergenic 30.0%
TTTAGTCACTCACTATAGAT+TGG - chr2_4:55061426-55061445 Msa0335860:CDS 30.0%
TTTGTTACAAAAATGGGGAA+TGG - chr2_4:55061470-55061489 Msa0335860:CDS 30.0%
GGAAAAATAAATTCGCTAGA+AGG - chr2_4:55061491-55061510 Msa0335860:intron 30.0%
AAAATAAATTCGCTAGAAGG+AGG - chr2_4:55061494-55061513 Msa0335860:intron 30.0%
AAATAAATTCGCTAGAAGGA+GGG - chr2_4:55061495-55061514 Msa0335860:intron 30.0%
ATAACTAAAAACAGAGCAGT+TGG + chr2_4:55061629-55061648 None:intergenic 30.0%
AGGATTCATTGGATATAACT+CGG - chr2_4:55062602-55062621 Msa0335860:CDS 30.0%
GTATTTAAGCATAGAGTCAA+CGG + chr2_4:55062686-55062705 None:intergenic 30.0%
!! TGGATTAACCACTTTTGATA+TGG - chr2_4:55062714-55062733 Msa0335860:CDS 30.0%
TATATCAGCCATATCAAAAG+TGG + chr2_4:55062725-55062744 None:intergenic 30.0%
TAGTTAATGATATCCATTGG+AGG - chr2_4:55062952-55062971 Msa0335860:CDS 30.0%
!!! TCTCATTTGTTGTGTTCTTT+TGG - chr2_4:55063112-55063131 Msa0335860:intron 30.0%
!! AATTTTTGGAAAAGGTCAGA+GGG - chr2_4:55063206-55063225 Msa0335860:intron 30.0%
! TATTTCTGTTAACCTTGTAC+AGG - chr2_4:55063997-55064016 Msa0335860:intron 30.0%
!!! GTTTTGATTTTACCTGTACA+AGG + chr2_4:55064012-55064031 None:intergenic 30.0%
! GAAGAGAAATTAAAGCACTT+GGG + chr2_4:55064116-55064135 None:intergenic 30.0%
! AGAAGAGAAATTAAAGCACT+TGG + chr2_4:55064117-55064136 None:intergenic 30.0%
! TATAAAGTATCTTCACTGTC+AGG - chr2_4:55064174-55064193 Msa0335860:intron 30.0%
ATCCCTCTCAAAATACAAAA+GGG - chr2_4:55064477-55064496 Msa0335860:intron 30.0%
!! TACCCTTTTGTATTTTGAGA+GGG + chr2_4:55064482-55064501 None:intergenic 30.0%
!! TTACCCTTTTGTATTTTGAG+AGG + chr2_4:55064483-55064502 None:intergenic 30.0%
AAACAAGTATCTACTAAGCA+TGG - chr2_4:55064715-55064734 Msa0335860:intron 30.0%
AAGAAGATGTAAACAGCATA+AGG - chr2_4:55064997-55065016 Msa0335860:intron 30.0%
AGAAGATGTAAACAGCATAA+GGG - chr2_4:55064998-55065017 Msa0335860:intron 30.0%
AAGGATCTTCTTAAAGTGAT+TGG - chr2_4:55065038-55065057 Msa0335860:CDS 30.0%
! GTGATTGTTTTCACTTATAC+AGG - chr2_4:55065118-55065137 Msa0335860:CDS 30.0%
! TTTTCACTTATACAGGACAA+GGG - chr2_4:55065125-55065144 Msa0335860:CDS 30.0%
GTAGAGTTCTTAATGGAATG+TGG - chr2_4:55061010-55061029 Msa0335860:three_prime_UTR 35.0%
!!! GATTTTTCTCTTTGATGACG+TGG - chr2_4:55061219-55061238 Msa0335860:CDS 35.0%
! ATTTTCTTGCCCAACTTAGT+TGG - chr2_4:55061312-55061331 Msa0335860:intron 35.0%
! TTTTCTTGCCCAACTTAGTT+GGG - chr2_4:55061313-55061332 Msa0335860:intron 35.0%
CCGATGAACTAATTTATCTC+TGG - chr2_4:55061337-55061356 Msa0335860:intron 35.0%
AATGTCAAACCAGTTTGAGT+CGG - chr2_4:55061367-55061386 Msa0335860:intron 35.0%
!!! CACTCACTATAGATTGGTTT+TGG - chr2_4:55061432-55061451 Msa0335860:CDS 35.0%
AATAAATTCGCTAGAAGGAG+GGG - chr2_4:55061496-55061515 Msa0335860:intron 35.0%
CAACTTGAGAAGTTGCATTA+AGG - chr2_4:55062353-55062372 Msa0335860:intron 35.0%
GGATTCATTGGATATAACTC+GGG - chr2_4:55062603-55062622 Msa0335860:CDS 35.0%
!! TTTATGGGAAGGTGTTTACA+TGG + chr2_4:55062797-55062816 None:intergenic 35.0%
TGACACGAATCTAGTACTTT+AGG - chr2_4:55062864-55062883 Msa0335860:intron 35.0%
ACGAATCTAGTACTTTAGGT+CGG - chr2_4:55062868-55062887 Msa0335860:intron 35.0%
!!! AGGTTTTGTCGAGTTGATTT+AGG - chr2_4:55062898-55062917 Msa0335860:intron 35.0%
!!! GGCAGTCAAGTTTTAGAATT+TGG + chr2_4:55062929-55062948 None:intergenic 35.0%
TCTAAACTCTAATCCTCCAA+TGG + chr2_4:55062968-55062987 None:intergenic 35.0%
AACATCCTGCATACTCAAAT+GGG + chr2_4:55063012-55063031 None:intergenic 35.0%
TAACATCCTGCATACTCAAA+TGG + chr2_4:55063013-55063032 None:intergenic 35.0%
TATGCAGGATGTTATAGATG+TGG - chr2_4:55063019-55063038 Msa0335860:intron 35.0%
! ACCTTTTCCAAAAATTCTGG+TGG + chr2_4:55063202-55063221 None:intergenic 35.0%
! CTGACCTTTTCCAAAAATTC+TGG + chr2_4:55063205-55063224 None:intergenic 35.0%
!! GAATTTTTGGAAAAGGTCAG+AGG - chr2_4:55063205-55063224 Msa0335860:intron 35.0%
! AGAGTACCTTCTATGTTCTA+TGG + chr2_4:55063356-55063375 None:intergenic 35.0%
TTTGATACAGTCTCACTAAG+TGG - chr2_4:55063392-55063411 Msa0335860:intron 35.0%
TTGATACAGTCTCACTAAGT+GGG - chr2_4:55063393-55063412 Msa0335860:intron 35.0%
AAGCTACTTGTCATCTTAAC+TGG + chr2_4:55063427-55063446 None:intergenic 35.0%
GAGACAACATTAATGTGTCA+AGG - chr2_4:55063452-55063471 Msa0335860:CDS 35.0%
TAATGTGTCAAGGAAGAGAA+TGG - chr2_4:55063462-55063481 Msa0335860:CDS 35.0%
GGGTAGAATTTAAATACCAG+TGG + chr2_4:55063516-55063535 None:intergenic 35.0%
AGGTGGGATTATTCAAATTC+AGG - chr2_4:55063733-55063752 Msa0335860:CDS 35.0%
TTCCTGATTAAGCATGTGTT+TGG - chr2_4:55063810-55063829 Msa0335860:intron 35.0%
TTCCAAACACATGCTTAATC+AGG + chr2_4:55063815-55063834 None:intergenic 35.0%
! TAAGCATGTGTTTGGAATAC+CGG - chr2_4:55063818-55063837 Msa0335860:intron 35.0%
! AAGCCACAAAAACCATGTTT+TGG - chr2_4:55063845-55063864 Msa0335860:intron 35.0%
! TTGCCAAAACATGGTTTTTG+TGG + chr2_4:55063851-55063870 None:intergenic 35.0%
TTTCCAGCTTCACAAAATCA+CGG - chr2_4:55063880-55063899 Msa0335860:intron 35.0%
AATCACGGTGAAAATGACAT+TGG - chr2_4:55063895-55063914 Msa0335860:intron 35.0%
ATCACGGTGAAAATGACATT+GGG - chr2_4:55063896-55063915 Msa0335860:intron 35.0%
CAGATGAGTTATAGTGTGTT+TGG + chr2_4:55063950-55063969 None:intergenic 35.0%
AGCAAAAGGGATGTTTATGT+TGG + chr2_4:55064437-55064456 None:intergenic 35.0%
! AACATAAACATCCCTTTTGC+TGG - chr2_4:55064436-55064455 Msa0335860:intron 35.0%
!! CTTTTGTATTTTGAGAGGGA+TGG + chr2_4:55064478-55064497 None:intergenic 35.0%
CATCCCTCTCAAAATACAAA+AGG - chr2_4:55064476-55064495 Msa0335860:intron 35.0%
ATATACTTCACAGCAACAGT+TGG + chr2_4:55064751-55064770 None:intergenic 35.0%
TGTGAAGTATATACTAGACC+AGG - chr2_4:55064759-55064778 Msa0335860:intron 35.0%
!! AGTTGATTTGCTTTCAATGC+AGG - chr2_4:55064785-55064804 Msa0335860:intron 35.0%
! CTTAAAGTGATTGGTGATTG+TGG - chr2_4:55065047-55065066 Msa0335860:CDS 35.0%
! GTTTTCACTTATACAGGACA+AGG - chr2_4:55065124-55065143 Msa0335860:CDS 35.0%
CCTTCTACTGAGACAAAATT+GGG + chr2_4:55065187-55065206 None:intergenic 35.0%
TCCTTCTACTGAGACAAAAT+TGG + chr2_4:55065188-55065207 None:intergenic 35.0%
TGAAAGTGGAGAATAGGTTG+TGG + chr2_4:55060825-55060844 None:intergenic 40.0%
! TTGATTCGAATTCGATGCAG+TGG - chr2_4:55060904-55060923 Msa0335860:three_prime_UTR 40.0%
! GAGTAACGGAAACGATTCAT+TGG - chr2_4:55060981-55061000 Msa0335860:three_prime_UTR 40.0%
! ACAGAGAAAATGAGTGGACT+AGG + chr2_4:55061147-55061166 None:intergenic 40.0%
! CATTCTGTTCTATGATGACG+TGG - chr2_4:55061180-55061199 Msa0335860:CDS 40.0%
!!! TTTTCTCTTTGATGACGTGG+AGG - chr2_4:55061222-55061241 Msa0335860:CDS 40.0%
ATGTCAAACCAGTTTGAGTC+GGG - chr2_4:55061368-55061387 Msa0335860:intron 40.0%
AATTTAGTCCCGACTCAAAC+TGG + chr2_4:55061379-55061398 None:intergenic 40.0%
AGTTTGAGTCGGGACTAAAT+TGG - chr2_4:55061378-55061397 Msa0335860:CDS 40.0%
GTTTGAGTCGGGACTAAATT+GGG - chr2_4:55061379-55061398 Msa0335860:CDS 40.0%
CCAAACTAAAGTGTACAAGC+TGG + chr2_4:55061576-55061595 None:intergenic 40.0%
CCAGCTTGTACACTTTAGTT+TGG - chr2_4:55061573-55061592 Msa0335860:intron 40.0%
ATCATGCGAACAAAACTCCA+GGG + chr2_4:55061957-55061976 None:intergenic 40.0%
CAACAGCAGAAACTCTTGAA+AGG + chr2_4:55062384-55062403 None:intergenic 40.0%
AACAGAACACCAACAAGAAC+AGG - chr2_4:55062490-55062509 Msa0335860:intron 40.0%
GTTGCAATTCCTGTTCTTGT+TGG + chr2_4:55062502-55062521 None:intergenic 40.0%
! CAGTAATGGGAAGGATTCAT+TGG - chr2_4:55062591-55062610 Msa0335860:intron 40.0%
! GATATAACTCGGGTTGTGAA+TGG - chr2_4:55062613-55062632 Msa0335860:CDS 40.0%
ATGCTTAAATACGCTGATGC+TGG - chr2_4:55062694-55062713 Msa0335860:CDS 40.0%
! TACTTTAGGTCGGCTTTATG+AGG - chr2_4:55062878-55062897 Msa0335860:intron 40.0%
!!! TGTTCTTTTGGCTTTGCAGA+TGG - chr2_4:55063124-55063143 Msa0335860:intron 40.0%
!!! GTTCTTTTGGCTTTGCAGAT+GGG - chr2_4:55063125-55063144 Msa0335860:intron 40.0%
ATCCCATATAGATCTTCAGC+TGG + chr2_4:55063151-55063170 None:intergenic 40.0%
!! GCCACCAGAATTTTTGGAAA+AGG - chr2_4:55063198-55063217 Msa0335860:intron 40.0%
CTACTTGTCATCTTAACTGG+CGG + chr2_4:55063424-55063443 None:intergenic 40.0%
!! ATTCTACCCCTCTTGTTGTT+TGG - chr2_4:55063527-55063546 Msa0335860:CDS 40.0%
CATACACCAAACAACAAGAG+GGG + chr2_4:55063536-55063555 None:intergenic 40.0%
GCATACACCAAACAACAAGA+GGG + chr2_4:55063537-55063556 None:intergenic 40.0%
AGCATACACCAAACAACAAG+AGG + chr2_4:55063538-55063557 None:intergenic 40.0%
!!! TGAGGTGTTTTAGTGCATCA+AGG + chr2_4:55063762-55063781 None:intergenic 40.0%
AAACACCTCACAGACTTGAA+AGG - chr2_4:55063772-55063791 Msa0335860:intron 40.0%
!!! AACCATGTTTTGGCAAAAGC+TGG - chr2_4:55063855-55063874 Msa0335860:intron 40.0%
! TTCCAGCTTTTGCCAAAACA+TGG + chr2_4:55063860-55063879 None:intergenic 40.0%
TCTACCTGATTGCTCACAAT+GGG + chr2_4:55064093-55064112 None:intergenic 40.0%
!!! AAGCTCTGCCATTTTCTGTT+GGG + chr2_4:55064227-55064246 None:intergenic 40.0%
!!! AAAGCTCTGCCATTTTCTGT+TGG + chr2_4:55064228-55064247 None:intergenic 40.0%
ATACCTGCATCACAATTTGG+GGG + chr2_4:55064371-55064390 None:intergenic 40.0%
CATACCTGCATCACAATTTG+GGG + chr2_4:55064372-55064391 None:intergenic 40.0%
CCATACCTGCATCACAATTT+GGG + chr2_4:55064373-55064392 None:intergenic 40.0%
CCAAATTGTGATGCAGGTAT+GGG - chr2_4:55064371-55064390 Msa0335860:intron 40.0%
!! GGATGTTTATGTTGGTGTCA+AGG + chr2_4:55064429-55064448 None:intergenic 40.0%
TTATTGCAGGTCCAGCAAAA+GGG + chr2_4:55064450-55064469 None:intergenic 40.0%
TTTATTGCAGGTCCAGCAAA+AGG + chr2_4:55064451-55064470 None:intergenic 40.0%
! AGGGATGGAGTATTTATTGC+AGG + chr2_4:55064463-55064482 None:intergenic 40.0%
TAGTGTTCTTAAGCGGGTAA+AGG + chr2_4:55064559-55064578 None:intergenic 40.0%
TTTACCCGCTTAAGAACACT+AGG - chr2_4:55064558-55064577 Msa0335860:intron 40.0%
ATCCTCCTAGTGTTCTTAAG+CGG + chr2_4:55064566-55064585 None:intergenic 40.0%
TAAGAGTTCGAAGAAGTCCT+TGG + chr2_4:55064696-55064715 None:intergenic 40.0%
GAAAGCAAATCAACTTCACC+TGG + chr2_4:55064780-55064799 None:intergenic 40.0%
TTAAATTGGACAAGCCCTGT+TGG - chr2_4:55064847-55064866 Msa0335860:intron 40.0%
! TCAATGGTTGGTGTAAGACT+TGG - chr2_4:55064921-55064940 Msa0335860:intron 40.0%
! CCCAATTTTGTCTCAGTAGA+AGG - chr2_4:55065184-55065203 Msa0335860:CDS 40.0%
AGCGAGTGAAAGTGGAGAAT+AGG + chr2_4:55060831-55060850 None:intergenic 45.0%
GTTGTTGAAGCGAGTGAAAG+TGG + chr2_4:55060839-55060858 None:intergenic 45.0%
TCGAATCAATCTTGCGCTGT+TGG + chr2_4:55060893-55060912 None:intergenic 45.0%
CAGCGAGTGAAACTGAGTAA+CGG - chr2_4:55060967-55060986 Msa0335860:three_prime_UTR 45.0%
AATGGAATGTGGCAGACAAG+TGG - chr2_4:55061021-55061040 Msa0335860:three_prime_UTR 45.0%
ATACCGGAGCATAGCTTCAA+CGG + chr2_4:55061076-55061095 None:intergenic 45.0%
ATAAGCCGGAATCAGCATAC+CGG + chr2_4:55061092-55061111 None:intergenic 45.0%
CATGTCGAAGGTAGATAAGC+CGG + chr2_4:55061106-55061125 None:intergenic 45.0%
! TCTGTTCTATGATGACGTGG+AGG - chr2_4:55061183-55061202 Msa0335860:CDS 45.0%
TCATCGGACCCAACTAAGTT+GGG + chr2_4:55061324-55061343 None:intergenic 45.0%
TTCATCGGACCCAACTAAGT+TGG + chr2_4:55061325-55061344 None:intergenic 45.0%
ACAAGCTGGAATAGCTCAGT+TGG + chr2_4:55061562-55061581 None:intergenic 45.0%
GATCATGCGAACAAAACTCC+AGG + chr2_4:55061958-55061977 None:intergenic 45.0%
TGACTACCCAGGAGGATAAT+CGG - chr2_4:55062557-55062576 Msa0335860:intron 45.0%
! CATTGTGGTCAGTAATGGGA+AGG - chr2_4:55062582-55062601 Msa0335860:intron 45.0%
AATGGAATGTGGCAAACGAG+TGG - chr2_4:55062631-55062650 Msa0335860:CDS 45.0%
CGGATGGGGCAAAATTGATA+GGG - chr2_4:55062654-55062673 Msa0335860:CDS 45.0%
GGGCAAAATTGATAGGGATG+AGG - chr2_4:55062660-55062679 Msa0335860:CDS 45.0%
TCAAATGGGACCAGTCTCTT+GGG + chr2_4:55062998-55063017 None:intergenic 45.0%
GGCCAGCTGAAGATCTATAT+GGG - chr2_4:55063146-55063165 Msa0335860:intron 45.0%
GTGGAACTGAAGCATATCCA+AGG + chr2_4:55063497-55063516 None:intergenic 45.0%
TGGATATGCTTCAGTTCCAC+TGG - chr2_4:55063497-55063516 Msa0335860:CDS 45.0%
! CTTCTCCTTTCAAGTCTGTG+AGG + chr2_4:55063780-55063799 None:intergenic 45.0%
CTCACAGACTTGAAAGGAGA+AGG - chr2_4:55063778-55063797 Msa0335860:intron 45.0%
! TGGTTTTTGTGGCTTTCCAC+CGG + chr2_4:55063840-55063859 None:intergenic 45.0%
! TCACCGTGATTTTGTGAAGC+TGG + chr2_4:55063886-55063905 None:intergenic 45.0%
GATTCCCATTGTGAGCAATC+AGG - chr2_4:55064086-55064105 Msa0335860:intron 45.0%
GTCTACCTGATTGCTCACAA+TGG + chr2_4:55064094-55064113 None:intergenic 45.0%
TATGCGTCCCCAACAGAAAA+TGG - chr2_4:55064216-55064235 Msa0335860:intron 45.0%
!!! AGCTCTGCCATTTTCTGTTG+GGG + chr2_4:55064226-55064245 None:intergenic 45.0%
TTTCCCCCAAATTGTGATGC+AGG - chr2_4:55064365-55064384 Msa0335860:intron 45.0%
CCCAAATTGTGATGCAGGTA+TGG - chr2_4:55064370-55064389 Msa0335860:intron 45.0%
CCCATACCTGCATCACAATT+TGG + chr2_4:55064374-55064393 None:intergenic 45.0%
ATGCAGGTATGGGACAGTAA+TGG - chr2_4:55064381-55064400 Msa0335860:intron 45.0%
TGCAGGTATGGGACAGTAAT+GGG - chr2_4:55064382-55064401 Msa0335860:intron 45.0%
TCCTCCTAGTGTTCTTAAGC+GGG + chr2_4:55064565-55064584 None:intergenic 45.0%
TTGCTGTACTTCGCATCACA+TGG - chr2_4:55064635-55064654 Msa0335860:intron 45.0%
GTGATTGTGGAGATGAGTAC+AGG - chr2_4:55065060-55065079 Msa0335860:CDS 45.0%
!! ATAACATAAAATTAAATAAT+TGG + chr2_4:55061980-55061999 None:intergenic 5.0%
!!! AAAAAAATAACATTTTTTTA+GGG + chr2_4:55062016-55062035 None:intergenic 5.0%
!!! TAAAAAAATAACATTTTTTT+AGG + chr2_4:55062017-55062036 None:intergenic 5.0%
!! CTGTTGGTTCTCTGTGAGTG+GGG + chr2_4:55060877-55060896 None:intergenic 50.0%
!! GCTGTTGGTTCTCTGTGAGT+GGG + chr2_4:55060878-55060897 None:intergenic 50.0%
!! ATGCTCCGGTATGCTGATTC+CGG - chr2_4:55061084-55061103 Msa0335860:CDS 50.0%
CGGCTTATCTACCTTCGACA+TGG - chr2_4:55061104-55061123 Msa0335860:CDS 50.0%
ACAGTGATCAGCCATGTCGA+AGG + chr2_4:55061118-55061137 None:intergenic 50.0%
GTGGCTGTTAACCACAAGGT+CGG + chr2_4:55061530-55061549 None:intergenic 50.0%
! TCAAGTTGCCCTATCCTGTG+CGG + chr2_4:55062341-55062360 None:intergenic 50.0%
TGGGTAGTCACACACTGACA+TGG + chr2_4:55062547-55062566 None:intergenic 50.0%
ATGTCAGTGTGTGACTACCC+AGG - chr2_4:55062546-55062565 Msa0335860:intron 50.0%
!! AATGCGCCGATTATCCTCCT+GGG + chr2_4:55062566-55062585 None:intergenic 50.0%
GGCGCATTGTGGTCAGTAAT+GGG - chr2_4:55062578-55062597 Msa0335860:intron 50.0%
! CTCGGGTTGTGAATGGAATG+TGG - chr2_4:55062620-55062639 Msa0335860:CDS 50.0%
GCGGATGGGGCAAAATTGAT+AGG - chr2_4:55062653-55062672 Msa0335860:CDS 50.0%
AGAGACAGTTCCCAAGAGAC+TGG - chr2_4:55062985-55063004 Msa0335860:CDS 50.0%
CTCAAATGGGACCAGTCTCT+TGG + chr2_4:55062999-55063018 None:intergenic 50.0%
CTGGTCCCATTTGAGTATGC+AGG - chr2_4:55063004-55063023 Msa0335860:intron 50.0%
GGGCCAGCTGAAGATCTATA+TGG - chr2_4:55063145-55063164 Msa0335860:intron 50.0%
TCAATCGAGTTCGTCGTGAG+CGG - chr2_4:55063176-55063195 Msa0335860:intron 50.0%
! TGAGCGGCCACCAGAATTTT+TGG - chr2_4:55063192-55063211 Msa0335860:intron 50.0%
CTTGTCATCTTAACTGGCGG+TGG + chr2_4:55063421-55063440 None:intergenic 50.0%
GTCAAGGAAGAGAATGGACG+TGG - chr2_4:55063468-55063487 Msa0335860:CDS 50.0%
GAGAATGGACGTGGAATCCT+TGG - chr2_4:55063477-55063496 Msa0335860:CDS 50.0%
! GCATGTGTTTGGAATACCGG+TGG - chr2_4:55063821-55063840 Msa0335860:intron 50.0%
! GCAGAGCTTTGTCAGCTTAC+AGG - chr2_4:55064238-55064257 Msa0335860:intron 50.0%
! AGGTATGGGACAGTAATGGG+TGG - chr2_4:55064385-55064404 Msa0335860:intron 50.0%
ACCCGCTTAAGAACACTAGG+AGG - chr2_4:55064561-55064580 Msa0335860:intron 50.0%
ACTTCGCATCACATGGCAGA+TGG - chr2_4:55064642-55064661 Msa0335860:intron 50.0%
!! ATGGCAGATGGTGGATGCTT+GGG - chr2_4:55064654-55064673 Msa0335860:intron 50.0%
ACCATTGATCCTGCTACAGC+AGG + chr2_4:55064909-55064928 None:intergenic 50.0%
GCTGTAGCAGGATCAATGGT+TGG - chr2_4:55064909-55064928 Msa0335860:intron 50.0%
AACAGCATAAGGGAAGCAGC+AGG - chr2_4:55065008-55065027 Msa0335860:intron 50.0%
ACAGCATAAGGGAAGCAGCA+GGG - chr2_4:55065009-55065028 Msa0335860:intron 50.0%
ATAAGGGAAGCAGCAGGGAA+AGG - chr2_4:55065014-55065033 Msa0335860:CDS 50.0%
GGTTCTCTGTGAGTGGGGAT+TGG + chr2_4:55060872-55060891 None:intergenic 55.0%
!! CGCTGTTGGTTCTCTGTGAG+TGG + chr2_4:55060879-55060898 None:intergenic 55.0%
GGAATGTGGCAGACAAGTGG+TGG - chr2_4:55061024-55061043 Msa0335860:three_prime_UTR 55.0%
TGTGGCAGACAAGTGGTGGT+TGG - chr2_4:55061028-55061047 Msa0335860:three_prime_UTR 55.0%
GTGGCAGACAAGTGGTGGTT+GGG - chr2_4:55061029-55061048 Msa0335860:three_prime_UTR 55.0%
TGGCAGACAAGTGGTGGTTG+GGG - chr2_4:55061030-55061049 Msa0335860:three_prime_UTR 55.0%
ACGCCGTTGAAGCTATGCTC+CGG - chr2_4:55061070-55061089 Msa0335860:CDS 55.0%
GCTGTTAACCACAAGGTCGG+AGG + chr2_4:55061527-55061546 None:intergenic 55.0%
GCGTGTGGCTGTTAACCACA+AGG + chr2_4:55061534-55061553 None:intergenic 55.0%
GCTCAGTTGGTTAGAGCGTG+TGG + chr2_4:55061549-55061568 None:intergenic 55.0%
TGGTGAGCACTTCTGTACCC+TGG - chr2_4:55061937-55061956 Msa0335860:intron 55.0%
AGAGTAGCCCGCACAGGATA+GGG - chr2_4:55062330-55062349 Msa0335860:intron 55.0%
CAAGTTGCCCTATCCTGTGC+GGG + chr2_4:55062340-55062359 None:intergenic 55.0%
TCAGTGTGTGACTACCCAGG+AGG - chr2_4:55062549-55062568 Msa0335860:intron 55.0%
!! CAATGCGCCGATTATCCTCC+TGG + chr2_4:55062567-55062586 None:intergenic 55.0%
GGAGGATAATCGGCGCATTG+TGG - chr2_4:55062567-55062586 Msa0335860:intron 55.0%
CGGCGCATTGTGGTCAGTAA+TGG - chr2_4:55062577-55062596 Msa0335860:intron 55.0%
GGAATGTGGCAAACGAGTGG+CGG - chr2_4:55062634-55062653 Msa0335860:CDS 55.0%
TCGCATCACATGGCAGATGG+TGG - chr2_4:55064645-55064664 Msa0335860:intron 55.0%
!! CATGGCAGATGGTGGATGCT+TGG - chr2_4:55064653-55064672 Msa0335860:intron 55.0%
!! TGGCAGATGGTGGATGCTTG+GGG - chr2_4:55064655-55064674 Msa0335860:intron 55.0%
! GGAGGATGGGGTTTGTTCCA+AGG - chr2_4:55064676-55064695 Msa0335860:intron 55.0%
GCCTGCTGTAGCAGGATCAA+TGG - chr2_4:55064905-55064924 Msa0335860:intron 55.0%
GGCAGACAAGTGGTGGTTGG+GGG - chr2_4:55061031-55061050 Msa0335860:three_prime_UTR 60.0%
AGACAAGTGGTGGTTGGGGG+AGG - chr2_4:55061034-55061053 Msa0335860:three_prime_UTR 60.0%
GGGTTGAACCTCCGACCTTG+TGG - chr2_4:55061516-55061535 Msa0335860:intron 60.0%
GAGAGTAGCCCGCACAGGAT+AGG - chr2_4:55062329-55062348 Msa0335860:intron 60.0%
! TGTGGCAAACGAGTGGCGGA+TGG - chr2_4:55062638-55062657 Msa0335860:CDS 60.0%
!! GTGGCAAACGAGTGGCGGAT+GGG - chr2_4:55062639-55062658 Msa0335860:CDS 60.0%
!! TGGCAAACGAGTGGCGGATG+GGG - chr2_4:55062640-55062659 Msa0335860:CDS 60.0%
!! CAGATGGTGGATGCTTGGGG+AGG - chr2_4:55064658-55064677 Msa0335860:intron 60.0%
! TGGTGGATGCTTGGGGAGGA+TGG - chr2_4:55064662-55064681 Msa0335860:intron 60.0%
GGTGGATGCTTGGGGAGGAT+GGG - chr2_4:55064663-55064682 Msa0335860:intron 60.0%
GTGGATGCTTGGGGAGGATG+GGG - chr2_4:55064664-55064683 Msa0335860:intron 60.0%
AACCTGCAGCCTGCTGTAGC+AGG - chr2_4:55064897-55064916 Msa0335860:intron 60.0%
ATCCTGCTACAGCAGGCTGC+AGG + chr2_4:55064902-55064921 None:intergenic 60.0%
GGAAGCAGCAGGGAAAGGCA+AGG - chr2_4:55065019-55065038 Msa0335860:CDS 60.0%
TGGTGGAGAGTAGCCCGCAC+AGG - chr2_4:55062324-55062343 Msa0335860:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55060802 55065348 55060802 ID=Msa0335860;Name=Msa0335860
chr2_4 mRNA 55060802 55065348 55060802 ID=Msa0335860-mRNA-1;Parent=Msa0335860;Name=Msa0335860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.75|0.66|1|0.87|0.77|9|257|504
chr2_4 exon 55060802 55061244 55060802 ID=Msa0335860-mRNA-1:exon:16698;Parent=Msa0335860-mRNA-1
chr2_4 exon 55061370 55061489 55061370 ID=Msa0335860-mRNA-1:exon:16697;Parent=Msa0335860-mRNA-1
chr2_4 exon 55061652 55061763 55061652 ID=Msa0335860-mRNA-1:exon:16696;Parent=Msa0335860-mRNA-1
chr2_4 exon 55061875 55061954 55061875 ID=Msa0335860-mRNA-1:exon:16695;Parent=Msa0335860-mRNA-1
chr2_4 exon 55062043 55062131 55062043 ID=Msa0335860-mRNA-1:exon:16694;Parent=Msa0335860-mRNA-1
chr2_4 exon 55062600 55062748 55062600 ID=Msa0335860-mRNA-1:exon:16693;Parent=Msa0335860-mRNA-1
chr2_4 exon 55062923 55063007 55062923 ID=Msa0335860-mRNA-1:exon:16692;Parent=Msa0335860-mRNA-1
chr2_4 exon 55063405 55063760 55063405 ID=Msa0335860-mRNA-1:exon:16691;Parent=Msa0335860-mRNA-1
chr2_4 exon 55065011 55065348 55065011 ID=Msa0335860-mRNA-1:exon:16690;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55065011 55065348 55065011 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55063405 55063760 55063405 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55062923 55063007 55062923 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55062600 55062748 55062600 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55062043 55062131 55062043 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55061875 55061954 55061875 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55061652 55061763 55061652 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55061370 55061489 55061370 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 CDS 55061059 55061244 55061059 ID=Msa0335860-mRNA-1:cds;Parent=Msa0335860-mRNA-1
chr2_4 three_prime_UTR 55060802 55061058 55060802 ID=Msa0335860-mRNA-1:three_prime_utr;Parent=Msa0335860-mRNA-1
Gene Sequence

>Msa0335860

ATGGCAGTGGTATCTTCAAGCCACAACCTATTCTCCACTTTCACTCGCTTCAACAACTCATCAAGAACCAATCCCCACTCACAGAGAACCAACAGCGCAAGATTGATTCGAATTCGATGCAGTGGTGATTTGAGCACATGTGCTACAAACACAGTTGAGAATCAGCAGCGAGTGAAACTGAGTAACGGAAACGATTCATTGGAAATATGTAGAGTTCTTAATGGAATGTGGCAGACAAGTGGTGGTTGGGGGAGGATTGATAGAGACGACGCCGTTGAAGCTATGCTCCGGTATGCTGATTCCGGCTTATCTACCTTCGACATGGCTGATCACTGTATAGTTTCTGCTGTTGCTAAAGCTACTTTTCACACTTTGAGCAGTTTGAAAATGACTGAGTTATTACAGCATTCTTTGAGCAAATTCACTTATTACAGTTCGAACAGAACACCAACAAGAACAGGAATTGCAACAAGAGAATATAAGCATTTGAGACCATGTCAGTGTGTGACTACCCAGGAGGATAATCGGCGCATTGTGGTCAGTAATGGGAAGGATTCATTGGATATAACTCGGGTTGTGAATGGAATGTGGCAAACGAGTGGCGGATGGGGCAAAATTGATAGGGATGAGGCCGTTGACTCTATGCTTAAATACGCTGATGCTGGATTAACCACTTTTGATATGGCTGATATATATGGGCCAGCTGAAGATCTATATGGGATTTTCATCAATCGAGTTCGTCGTGAGCGGCCACCAGAATTTTTGGAAAAGGTCAGAGGTCTCACTAAGTGGGTGCCACCGCCAGTTAAGATGACAAGTAGCTTTGTAAGAGACAACATTAATGTGTCAAGGAAGAGAATGGACGTGGAATCCTTGGATATGCTTCAGTTCCACTGGTATTTAAATTCTACCCCTCTTGTTGTTTGGTGTAAAATCAAAACTATAGCTCTAACAAATTTTGATACCGAGAGATTACAAATTATTCTTGAAAATGAGATTCCCATTGTGAGCAATCAGGTACAACATTCACTTGTTGATATGCGTCCCCAACAGAAAATGGCAGAGCTTTGTCAGCTTACAGGAGTCAAACTGATAACGTATGGGACAGTAATGGGTGGTCTGTTGTCTGAGAAGTTCCTTGACACCAACATAAACATCCCTTTTGCTGGACCTGCAATAAATACTCCATCCCTCTCAAAATACAAAAGGATGGTGGATGCTTGGGGAGGATGGGGTTTGTTCCAAGGACTTCTTCGAACTCTTAAACAAGTATCTACTAAGCATGGCGTTTCAATTCCAACTGTTGCTGTGAAGTATATACTAGACCAGCCTGCTGTAGCAGGATCAATGGTTGGTGTAAGACTTGGCTTGTCAGAACATATTCAAGACTGCAATGCTATCTTTTCACTTCTTCTTGATGAAGAAGATGTAAACAGCATAAGGGAAGCAGCAGGGAAAGGCAAGGATCTTCTTAAAGTGATTGGTGATTGTGGAGATGAGTACAGGCGTGCATGA

Protein sequence

>Msa0335860

MAVVSSSHNLFSTFTRFNNSSRTNPHSQRTNSARLIRIRCSGDLSTCATNTVENQQRVKLSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVEAMLRYADSGLSTFDMADHCIVSAVAKATFHTLSSLKMTELLQHSLSKFTYYSSNRTPTRTGIATREYKHLRPCQCVTTQEDNRRIVVSNGKDSLDITRVVNGMWQTSGGWGKIDRDEAVDSMLKYADAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLEKVRGLTKWVPPPVKMTSSFVRDNINVSRKRMDVESLDMLQFHWYLNSTPLVVWCKIKTIALTNFDTERLQIILENEIPIVSNQVQHSLVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNINIPFAGPAINTPSLSKYKRMVDAWGGWGLFQGLLRTLKQVSTKHGVSIPTVAVKYILDQPAVAGSMVGVRLGLSEHIQDCNAIFSLLLDEEDVNSIREAAGKGKDLLKVIGDCGDEYRRA*