AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166980 MtrunA17_Chr1g0182541 98.142 323 6 0 1 323 1 323 0.0 659
Msa0166980 MtrunA17_Chr7g0262941 82.716 324 55 1 1 323 1 324 0.0 573
Msa0166980 MtrunA17_Chr1g0202931 58.033 305 128 0 13 317 8 312 8.24e-129 370
Msa0166980 MtrunA17_Chr8g0386971 56.452 310 135 0 10 319 5 314 1.77e-127 367
Msa0166980 MtrunA17_Chr1g0202861 57.377 305 130 0 13 317 49 353 1.78e-127 368
Msa0166980 MtrunA17_Chr1g0202891 58.033 305 128 0 13 317 8 312 2.07e-127 366
Msa0166980 MtrunA17_Chr1g0202871 58.033 305 128 0 13 317 8 312 4.44e-127 365
Msa0166980 MtrunA17_Chr6g0470321 55.700 307 133 1 14 317 17 323 3.07e-119 346
Msa0166980 MtrunA17_Chr6g0470501 55.882 306 132 1 15 317 37 342 2.64e-116 339
Msa0166980 MtrunA17_Chr8g0388831 49.091 330 158 5 1 323 1 327 1.24e-99 296
Msa0166980 MtrunA17_Chr4g0058731 47.302 315 162 2 8 318 19 333 2.79e-97 291
Msa0166980 MtrunA17_Chr3g0117251 44.048 168 93 1 152 318 1 168 4.15e-45 151
Msa0166980 MtrunA17_Chr3g0117241 50.649 154 73 1 1 151 1 154 2.09e-44 149
Msa0166980 MtrunA17_Chr2g0317921 33.758 314 171 12 36 317 88 396 2.95e-27 110
Msa0166980 MtrunA17_Chr6g0481311 31.518 257 160 7 33 280 60 309 7.81e-25 103
Msa0166980 MtrunA17_Chr6g0466681 28.622 283 183 7 38 320 70 333 3.79e-23 98.2
Msa0166980 MtrunA17_Chr6g0469251 26.780 295 192 9 42 318 14 302 1.67e-17 81.6
Msa0166980 MtrunA17_Chr3g0079561 25.882 255 165 9 82 318 10 258 2.85e-14 71.6
Msa0166980 MtrunA17_Chr1g0202911 48.485 66 34 0 38 103 4 69 4.49e-14 67.0
Msa0166980 MtrunA17_Chr7g0247011 26.277 274 157 7 37 278 9 269 9.96e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166980 AT5G02540.1 70.093 321 96 0 2 322 1 321 4.40e-168 470
Msa0166980 AT2G37540.1 67.913 321 103 0 2 322 1 321 1.23e-167 469
Msa0166980 AT2G37540.2 68.000 250 80 0 2 251 1 250 1.38e-128 368
Msa0166980 AT4G23430.2 56.230 313 136 1 10 321 5 317 3.39e-128 369
Msa0166980 AT4G23420.1 56.592 311 134 1 10 319 5 315 2.18e-127 367
Msa0166980 AT4G23420.2 56.592 311 134 1 10 319 5 315 2.18e-127 367
Msa0166980 AT4G23420.3 56.863 306 131 1 15 319 27 332 2.41e-126 365
Msa0166980 AT4G11410.1 55.921 304 134 0 13 316 8 311 1.94e-125 362
Msa0166980 AT4G23430.1 55.911 313 135 2 10 321 5 315 3.33e-125 361
Msa0166980 AT4G23430.4 53.355 313 135 2 10 321 5 307 3.25e-118 343
Msa0166980 AT4G23430.3 53.035 313 134 3 10 321 5 305 2.34e-115 336
Msa0166980 AT4G24050.1 50.789 317 153 2 10 323 10 326 8.35e-104 307
Msa0166980 AT4G23420.5 56.589 258 111 1 10 266 5 262 3.00e-103 303
Msa0166980 AT4G11410.2 57.312 253 107 1 13 265 8 259 4.83e-103 303
Msa0166980 AT4G23420.4 59.657 233 94 0 10 242 5 237 5.80e-101 298
Msa0166980 AT5G50130.1 47.826 322 164 3 1 318 1 322 1.80e-96 289
Msa0166980 AT1G64590.1 49.013 304 144 3 22 318 22 321 1.36e-85 261
Msa0166980 AT5G50130.8 46.975 281 148 1 39 318 8 288 7.91e-84 255
Msa0166980 AT5G50130.7 46.809 282 148 2 39 318 8 289 2.84e-82 251
Msa0166980 AT4G24050.2 50.187 267 128 3 10 273 10 274 4.17e-82 250
Msa0166980 AT5G50130.2 46.931 277 143 3 1 273 1 277 1.94e-80 248
Msa0166980 AT5G50130.9 48.649 259 130 2 1 256 1 259 1.58e-79 243
Msa0166980 AT5G50130.4 46.763 278 143 4 1 273 1 278 7.14e-79 243
Msa0166980 AT5G50130.3 48.462 260 130 3 1 256 1 260 5.33e-78 239
Msa0166980 AT5G50130.6 45.570 237 127 2 39 273 8 244 3.09e-66 210
Msa0166980 AT5G50130.5 45.378 238 127 3 39 273 8 245 9.95e-65 206
Msa0166980 AT1G03630.2 34.505 313 169 12 36 317 89 396 4.93e-30 118
Msa0166980 AT1G03630.1 34.505 313 169 12 36 317 91 398 5.07e-30 118
Msa0166980 AT5G54190.1 33.441 311 172 12 38 317 96 402 6.83e-30 117
Msa0166980 AT4G27440.2 33.234 334 184 12 19 317 69 398 6.33e-28 112
Msa0166980 AT4G27440.1 33.234 334 184 12 19 317 69 398 6.33e-28 112
Msa0166980 AT4G09750.1 30.116 259 163 6 38 293 47 290 7.38e-27 108
Msa0166980 AT4G27760.1 29.934 304 184 7 34 317 57 351 7.92e-27 108
Msa0166980 AT5G53090.1 28.904 301 191 5 34 317 56 350 7.93e-23 97.8
Msa0166980 AT5G54190.2 31.228 285 162 10 63 317 1 281 7.01e-22 94.0
Msa0166980 AT5G04070.1 26.797 306 196 9 37 323 61 357 3.55e-21 93.2
Msa0166980 AT5G15940.1 26.852 324 211 9 17 320 40 357 1.99e-20 90.9
Msa0166980 AT5G53100.1 31.068 309 179 11 33 317 43 341 2.33e-20 90.9
Msa0166980 AT5G15940.3 26.852 324 211 9 17 320 41 358 2.47e-20 90.9
Msa0166980 AT5G15940.2 26.852 324 211 9 17 320 41 358 2.47e-20 90.9
Msa0166980 AT5G15940.4 28.689 244 155 6 17 245 41 280 1.52e-18 85.1
Msa0166980 AT5G61830.1 28.053 303 144 12 37 293 39 313 1.05e-12 68.2
Msa0166980 AT5G61830.2 28.053 303 144 12 37 293 39 313 1.05e-12 68.2

Find 98 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAACTACGAATATGATTT+TGG 0.114163 1_4:+48609765 None:intergenic
GATAATATCAATGATCAAAT+TGG 0.192674 1_4:-48611097 Msa0166980:CDS
AAGTTTGTAAAATTAATTAA+AGG 0.255004 1_4:+48609556 None:intergenic
ATGAGGCTAGCAAGGAAATT+TGG 0.265842 1_4:+48613778 None:intergenic
CCAAGCTTGAAAGGGGTAAC+TGG 0.269808 1_4:-48609989 Msa0166980:CDS
AAAAGCATGAATGAATAGTT+TGG 0.293971 1_4:+48613812 None:intergenic
TCCTTCTCTGTTGTTTGAAC+CGG 0.317005 1_4:-48609581 Msa0166980:three_prime_UTR
TTTGCGTCAAATGGACTCTT+AGG 0.333139 1_4:-48609926 Msa0166980:CDS
TATTCATTTGATTATTTCCT+TGG 0.335332 1_4:-48613559 Msa0166980:five_prime_UTR
TACTCTGACAAGAAGGCTTA+TGG 0.335582 1_4:-48610983 Msa0166980:CDS
TCTTTGGTCACGGGCATGGC+TGG 0.344132 1_4:-48613496 Msa0166980:CDS
CCAGTTACCCCTTTCAAGCT+TGG 0.348372 1_4:+48609989 None:intergenic
ATGGCTGGACCAAGTGGATT+TGG 0.357934 1_4:-48613481 Msa0166980:CDS
ATTTAACAAATTAAAGCTTA+AGG 0.358427 1_4:+48609493 None:intergenic
TTATCGAATATTATCTTTCA+AGG 0.362573 1_4:-48609688 Msa0166980:three_prime_UTR
ATTCATGTTGTTTGAACTAA+AGG 0.370111 1_4:+48609527 None:intergenic
CAATTCCATCTTGTGTTAGT+TGG 0.380080 1_4:+48611388 None:intergenic
TGCTTTCTCTAGAATCAAAA+TGG 0.393015 1_4:-48613530 Msa0166980:exon
GCAGGAGGAGCAAGTGGTAT+AGG 0.393987 1_4:-48611921 Msa0166980:intron
GACTCTTAGGAAGAAAACTT+TGG 0.399753 1_4:-48609913 Msa0166980:CDS
CAAGTAGAAGGTTTGTCAAA+AGG 0.414777 1_4:+48611221 None:intergenic
CTCTTCATCCAAGCTTGAAA+GGG 0.423486 1_4:-48609997 Msa0166980:CDS
ACTCTTAGGAAGAAAACTTT+GGG 0.424071 1_4:-48609912 Msa0166980:CDS
CCAAGTGCATTTGCGTCAAA+TGG 0.424836 1_4:-48609935 Msa0166980:CDS
AAAGCATGAATGAATAGTTT+GGG 0.424969 1_4:+48613813 None:intergenic
TGAGCTTTCTCGTCGCTTGA+AGG 0.425790 1_4:-48610927 Msa0166980:intron
GTAAAATTAATTAAAGGATC+CGG 0.438752 1_4:+48609562 None:intergenic
ATGTAGTATGTTGGCTAACT+TGG 0.439546 1_4:+48610955 None:intergenic
TTTCTCTTTGGTCACGGGCA+TGG 0.440154 1_4:-48613500 Msa0166980:CDS
CGCAAAAGCCACTGGAATTG+AGG 0.440184 1_4:-48611182 Msa0166980:CDS
AAAGAAGAGTGTCTCATAAG+AGG 0.446043 1_4:+48610459 None:intergenic
CATTGTTGTTTATAGGAAGA+AGG 0.448332 1_4:-48610528 Msa0166980:intron
AGAGGAGTCATTATTACTCC+TGG 0.451331 1_4:+48610477 None:intergenic
CCATTTGACGCAAATGCACT+TGG 0.458408 1_4:+48609935 None:intergenic
TTTCAAAGTCTTGATTGTCT+TGG 0.471804 1_4:-48609862 Msa0166980:exon
GAAAGAAAATTTAATGAGGA+AGG 0.473569 1_4:+48613749 None:intergenic
ATAATATCAATGATCAAATT+GGG 0.478493 1_4:-48611096 Msa0166980:intron
AGGAGCAAGTGGTATAGGCT+TGG 0.478994 1_4:-48611916 Msa0166980:CDS
CCATCTTGTGTTAGTTGGAA+GGG 0.480813 1_4:+48611393 None:intergenic
CTCATTTGCATGTAGTATGT+TGG 0.487271 1_4:+48610946 None:intergenic
GCTCTTCATCCAAGCTTGAA+AGG 0.487681 1_4:-48609998 Msa0166980:CDS
TCCATCTTGTGTTAGTTGGA+AGG 0.500774 1_4:+48611392 None:intergenic
GATGTGTATATATGCATGTT+GGG 0.503280 1_4:+48613654 None:intergenic
CTTGGAGACAGCACGAGTCT+TGG 0.504599 1_4:-48611898 Msa0166980:CDS
CAGTTTGCAACAAATCATCT+TGG 0.507918 1_4:-48611360 Msa0166980:intron
TACTCCTGGGTGTACTGAGT+TGG 0.511760 1_4:+48610491 None:intergenic
AAACAATCCGCAAAAGCCAC+TGG 0.513469 1_4:-48611190 Msa0166980:CDS
GCAAAAGCCACTGGAATTGA+GGG 0.513952 1_4:-48611181 Msa0166980:CDS
CATCATCGCCGCAAGAAACA+TGG 0.516344 1_4:-48611856 Msa0166980:CDS
TTTCAGTTACTCTGACAAGA+AGG 0.517957 1_4:-48610990 Msa0166980:intron
AATGAGGAAGGTATAGTATG+AGG 0.518267 1_4:+48613761 None:intergenic
GGGTTATTTAAATGGAAAAG+TGG 0.518296 1_4:-48609431 Msa0166980:three_prime_UTR
AATCTCACTGCAATTATCAC+AGG 0.520699 1_4:-48613412 Msa0166980:intron
ATATTATCTTTCAAGGTTAG+CGG 0.525494 1_4:-48609681 Msa0166980:intron
CTTAAATGAACAAGTAGTAA+TGG 0.525923 1_4:+48613621 None:intergenic
CAAGCTTGAAAGGGGTAACT+GGG 0.526253 1_4:-48609988 Msa0166980:CDS
CATACCTACACTTATGAAGA+AGG 0.526398 1_4:-48611130 Msa0166980:CDS
TTATGAAGAAGGCATTCGAT+TGG 0.541423 1_4:-48611119 Msa0166980:CDS
CATCTTGTGTTAGTTGGAAG+GGG 0.544361 1_4:+48611394 None:intergenic
TGAATAGTTTGGGAAATAGC+AGG 0.547133 1_4:+48613823 None:intergenic
TTCTCTAGAATCAAAATGGT+GGG 0.548364 1_4:-48613526 Msa0166980:exon
TGCAGACTCCATGTTTCTTG+CGG 0.551159 1_4:+48611848 None:intergenic
CTTATAGCTTATAAGTTGAG+TGG 0.552980 1_4:+48609809 None:intergenic
ACGAGTCTTGGCTCTTCGAA+AGG 0.553010 1_4:-48611886 Msa0166980:CDS
CCCTTCCAACTAACACAAGA+TGG 0.556997 1_4:-48611393 Msa0166980:CDS
GGTATAGTATGAGGCTAGCA+AGG 0.558716 1_4:+48613770 None:intergenic
AGCAAGGAAATTTGGAAAGA+GGG 0.563961 1_4:+48613786 None:intergenic
TAGCAAGGAAATTTGGAAAG+AGG 0.565469 1_4:+48613785 None:intergenic
AACTTGTTCAGCTGTTGTAG+AGG 0.569993 1_4:+48613456 None:intergenic
ATTCAAATAAAGATAACGTG+TGG 0.570775 1_4:+48613706 None:intergenic
TGATGTGTATATATGCATGT+TGG 0.571262 1_4:+48613653 None:intergenic
TTATAGCTTATAAGTTGAGT+GGG 0.572501 1_4:+48609810 None:intergenic
GAGGAGTCATTATTACTCCT+GGG 0.575669 1_4:+48610478 None:intergenic
GTGGAGTATTAATTAAATGT+TGG 0.576785 1_4:-48609630 Msa0166980:intron
TTCAAATAAAGATAACGTGT+GGG 0.583217 1_4:+48613707 None:intergenic
TTTCTCTAGAATCAAAATGG+TGG 0.588043 1_4:-48613527 Msa0166980:exon
GGACAACAAGTCTGCTCGAG+TGG 0.588369 1_4:-48611799 Msa0166980:CDS
AAAGCACACACAAAAGAAGA+AGG 0.588560 1_4:+48609709 None:intergenic
ATAAGAAAGAAAATTTAATG+AGG 0.591681 1_4:+48613745 None:intergenic
GATTCTACCCTCAATTCCAG+TGG 0.595130 1_4:+48611174 None:intergenic
ACAAATGCAGGAGGAGCAAG+TGG 0.598604 1_4:-48611927 Msa0166980:intron
TCCGGTTCAAACAACAGAGA+AGG 0.600230 1_4:+48609580 None:intergenic
CATATGGAAGAATGTCCCAC+AGG 0.604912 1_4:-48610285 Msa0166980:intron
TAGAGAAAGCACACAAACCA+AGG 0.609162 1_4:+48613542 None:intergenic
ACGGGCATGGCTGGACCAAG+TGG 0.612486 1_4:-48613487 Msa0166980:CDS
AAGAAACATGGAGTCTGCAA+AGG 0.621142 1_4:-48611844 Msa0166980:CDS
AGCTAAACAAATTATACTAG+AGG 0.622644 1_4:-48611820 Msa0166980:CDS
AAAGTGGATGATTTCACACA+AGG 0.625176 1_4:-48609415 Msa0166980:three_prime_UTR
AAATGAACAAGTAGTAATGG+TGG 0.633497 1_4:+48613624 None:intergenic
TCTTCATCCAAGCTTGAAAG+GGG 0.636952 1_4:-48609996 Msa0166980:CDS
ACAGCTGAACAAGTTACTGA+AGG 0.640485 1_4:-48613448 Msa0166980:CDS
TGAGAGGAAGATCGAGAGCG+AGG 0.641279 1_4:+48611718 None:intergenic
TTGTTCATTTAAGCTCACAA+AGG 0.643235 1_4:-48613611 Msa0166980:five_prime_UTR
AATGCCTTCTTCATAAGTGT+AGG 0.646281 1_4:+48611126 None:intergenic
ACATACATTAAGATGTTGAG+AGG 0.647403 1_4:+48611702 None:intergenic
GTAGAGGATCCAAATCCACT+TGG 0.663839 1_4:+48613472 None:intergenic
TAACAGACTTCACTGAACAA+AGG 0.665475 1_4:+48611760 None:intergenic
ACAGCCAACTCAGTACACCC+AGG 0.731735 1_4:-48610495 Msa0166980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATATTTTTTTTTTA+AGG - chr1_4:48610992-48611011 Msa0166980:intron 0.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr1_4:48610664-48610683 Msa0166980:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr1_4:48610665-48610684 Msa0166980:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG + chr1_4:48610713-48610732 None:intergenic 10.0%
!!! TACTATATAGTTTTAAAATA+CGG + chr1_4:48611574-48611593 None:intergenic 10.0%
!!! ATTTTTAAAAATAATGAGAA+AGG - chr1_4:48611602-48611621 Msa0166980:intron 10.0%
!! AAAAATTAAAACAACAAATA+TGG + chr1_4:48613163-48613182 None:intergenic 10.0%
!! AAGTTTGTAAAATTAATTAA+AGG + chr1_4:48613671-48613690 None:intergenic 10.0%
!!! AATTTGTTAAATATTTTATG+AGG - chr1_4:48613742-48613761 Msa0166980:five_prime_UTR 10.0%
!!! ATTTGTTAAATATTTTATGA+GGG - chr1_4:48613743-48613762 Msa0166980:five_prime_UTR 10.0%
!! ATAAGAAAGAAAATTTAATG+AGG + chr1_4:48609482-48609501 None:intergenic 15.0%
!!! TTAAGCAATGAATTTTTTTT+AGG + chr1_4:48610165-48610184 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr1_4:48610741-48610760 Msa0166980:intron 15.0%
!!! AAACTCTTTAATTTAATACT+CGG + chr1_4:48610817-48610836 None:intergenic 15.0%
!! CTAATGATTATAATTCTTAA+CGG - chr1_4:48610939-48610958 Msa0166980:CDS 15.0%
!! CATTAATTAACTAATACTAA+AGG - chr1_4:48611634-48611653 Msa0166980:intron 15.0%
!! ATAATATCAATGATCAAATT+GGG - chr1_4:48612128-48612147 Msa0166980:intron 15.0%
!! GAAAAATTTATGGAAATATT+GGG + chr1_4:48612218-48612237 None:intergenic 15.0%
!! TGAAAAATTTATGGAAATAT+TGG + chr1_4:48612219-48612238 None:intergenic 15.0%
!! ATACTATCAAAATATACTAT+TGG - chr1_4:48612362-48612381 Msa0166980:intron 15.0%
!! CTATTGTAATAAATAAATCT+TGG - chr1_4:48612410-48612429 Msa0166980:intron 15.0%
!! ACTTAGACATATAATAAATA+AGG + chr1_4:48612867-48612886 None:intergenic 15.0%
!!! TTTGTTAATTTTAAAATTGC+AGG - chr1_4:48613180-48613199 Msa0166980:intron 15.0%
!!! TTGTTAATTTTAAAATTGCA+GGG - chr1_4:48613181-48613200 Msa0166980:intron 15.0%
!!! AATTTTTTTTTTTTTTGACG+TGG - chr1_4:48613575-48613594 Msa0166980:five_prime_UTR 15.0%
!! ATTTAACAAATTAAAGCTTA+AGG + chr1_4:48613734-48613753 None:intergenic 15.0%
!! TATTCATTTGATTATTTCCT+TGG - chr1_4:48609665-48609684 Msa0166980:intron 20.0%
!!! ATTCTAATTCCATATTCTTT+TGG + chr1_4:48609909-48609928 None:intergenic 20.0%
!! TTAGTTATATATATGCACAA+AGG + chr1_4:48610266-48610285 None:intergenic 20.0%
!!! AATCAAGACATGTTTTATTA+TGG - chr1_4:48610285-48610304 Msa0166980:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG - chr1_4:48610353-48610372 Msa0166980:intron 20.0%
!! TAAATTAATAATGTCAGGAT+CGG - chr1_4:48610358-48610377 Msa0166980:intron 20.0%
!! TCTTTATTATACTGTATAGT+TGG - chr1_4:48611028-48611047 Msa0166980:intron 20.0%
!! TATTCTGTCAAAAATTTATG+AGG - chr1_4:48611098-48611117 Msa0166980:CDS 20.0%
!! ATTCTGTCAAAAATTTATGA+GGG - chr1_4:48611099-48611118 Msa0166980:CDS 20.0%
!! AGAACAAATAAAACATGATT+TGG + chr1_4:48611210-48611229 None:intergenic 20.0%
!!! TTTTATTTGTTCTTGATTAG+TGG - chr1_4:48611217-48611236 Msa0166980:CDS 20.0%
!! TTCTATAATGTATTTGTCTA+AGG + chr1_4:48611717-48611736 None:intergenic 20.0%
!! TATGTTATTAAGTAGCTATT+TGG + chr1_4:48611767-48611786 None:intergenic 20.0%
!! TAGCTACTTAATAACATAAT+TGG - chr1_4:48611769-48611788 Msa0166980:CDS 20.0%
!!! TAATTGGTTGTATTTTTTTC+AGG - chr1_4:48611974-48611993 Msa0166980:intron 20.0%
!! GATAATATCAATGATCAAAT+TGG - chr1_4:48612127-48612146 Msa0166980:intron 20.0%
!!! TTGGGAAATTTTTATTGTAA+AGG + chr1_4:48612200-48612219 None:intergenic 20.0%
!!! AAATTGAATGAATTCCTTTT+AGG + chr1_4:48612509-48612528 None:intergenic 20.0%
!!! TCATAAGAAACTTTTTTTTG+AGG - chr1_4:48612631-48612650 Msa0166980:intron 20.0%
!!! TGTTATTTAATGCACAAATT+TGG + chr1_4:48612660-48612679 None:intergenic 20.0%
!!! TTTTTGACATTGTTGTTTAT+AGG - chr1_4:48612689-48612708 Msa0166980:intron 20.0%
!! GAATTAAAATAAATACCTGT+GGG + chr1_4:48612957-48612976 None:intergenic 20.0%
!! TAAAACATTGTAGAATAAGA+AGG + chr1_4:48612979-48612998 None:intergenic 20.0%
!!! ATAACTACGAATATGATTTT+GGG + chr1_4:48613461-48613480 None:intergenic 20.0%
!!! TATAACTACGAATATGATTT+TGG + chr1_4:48613462-48613481 None:intergenic 20.0%
!! TTATCGAATATTATCTTTCA+AGG - chr1_4:48613536-48613555 Msa0166980:five_prime_UTR 20.0%
!! GTAAAATTAATTAAAGGATC+CGG + chr1_4:48613665-48613684 None:intergenic 20.0%
!!! TTTTTTGAGCAAATTTTATG+AGG - chr1_4:48613772-48613791 Msa0166980:five_prime_UTR 20.0%
!!! TTTTTGAGCAAATTTTATGA+GGG - chr1_4:48613773-48613792 Msa0166980:five_prime_UTR 20.0%
!!! TTTTATGAGGGTTATTTAAA+TGG - chr1_4:48613785-48613804 Msa0166980:five_prime_UTR 20.0%
! AAAGCATGAATGAATAGTTT+GGG + chr1_4:48609414-48609433 None:intergenic 25.0%
!! AAAAGCATGAATGAATAGTT+TGG + chr1_4:48609415-48609434 None:intergenic 25.0%
! GAAAGAAAATTTAATGAGGA+AGG + chr1_4:48609478-48609497 None:intergenic 25.0%
! TTCAAATAAAGATAACGTGT+GGG + chr1_4:48609520-48609539 None:intergenic 25.0%
! ATTCAAATAAAGATAACGTG+TGG + chr1_4:48609521-48609540 None:intergenic 25.0%
! CTTAAATGAACAAGTAGTAA+TGG + chr1_4:48609606-48609625 None:intergenic 25.0%
! AAAACAAACAAAAGAGGAAA+AGG + chr1_4:48609966-48609985 None:intergenic 25.0%
!!! TTTTCCTCTTTTGTTTGTTT+TGG - chr1_4:48609965-48609984 Msa0166980:CDS 25.0%
!!! TTTCCTCTTTTGTTTGTTTT+GGG - chr1_4:48609966-48609985 Msa0166980:CDS 25.0%
! TATAAGCCTAACTTTATTCA+TGG - chr1_4:48610128-48610147 Msa0166980:intron 25.0%
! ATTAAGCCATGAATAAAGTT+AGG + chr1_4:48610137-48610156 None:intergenic 25.0%
! ATCTATATCTATGACTTTAG+AGG - chr1_4:48610883-48610902 Msa0166980:intron 25.0%
!! TGGTCAAAGTATTATTTAGA+AGG - chr1_4:48611048-48611067 Msa0166980:intron 25.0%
! TGACAGAATATATAGTTAGA+TGG + chr1_4:48611088-48611107 None:intergenic 25.0%
! TTCTGTCAAAAATTTATGAG+GGG - chr1_4:48611100-48611119 Msa0166980:CDS 25.0%
! TTGAATGTGTTTGAATATTG+AGG - chr1_4:48611179-48611198 Msa0166980:CDS 25.0%
! TACTAATACTAAACAAATGC+AGG - chr1_4:48611285-48611304 Msa0166980:intron 25.0%
! AGCTAAACAAATTATACTAG+AGG - chr1_4:48611404-48611423 Msa0166980:CDS 25.0%
! TGTGCATATCATCATTTATT+TGG - chr1_4:48611913-48611932 Msa0166980:CDS 25.0%
!!! TTTTGTGTATTCTAGCTAAT+TGG - chr1_4:48611958-48611977 Msa0166980:intron 25.0%
! CAGAGTAACTGAAAAATTTA+TGG + chr1_4:48612228-48612247 None:intergenic 25.0%
!!! TTGTTTTAACTCTTGTTGTA+CGG + chr1_4:48612820-48612839 None:intergenic 25.0%
!! AGATGTTCACATTTTACATA+TGG - chr1_4:48612923-48612942 Msa0166980:intron 25.0%
! GGAATTAAAATAAATACCTG+TGG + chr1_4:48612958-48612977 None:intergenic 25.0%
!! TTATAGCTTATAAGTTGAGT+GGG + chr1_4:48613417-48613436 None:intergenic 25.0%
! ATATTATCTTTCAAGGTTAG+CGG - chr1_4:48613543-48613562 Msa0166980:five_prime_UTR 25.0%
!! GTGGAGTATTAATTAAATGT+TGG - chr1_4:48613594-48613613 Msa0166980:five_prime_UTR 25.0%
!! ATTCATGTTGTTTGAACTAA+AGG + chr1_4:48613700-48613719 None:intergenic 25.0%
GATGTGTATATATGCATGTT+GGG + chr1_4:48609573-48609592 None:intergenic 30.0%
TGATGTGTATATATGCATGT+TGG + chr1_4:48609574-48609593 None:intergenic 30.0%
AAATGAACAAGTAGTAATGG+TGG + chr1_4:48609603-48609622 None:intergenic 30.0%
TTGTTCATTTAAGCTCACAA+AGG - chr1_4:48609613-48609632 Msa0166980:three_prime_UTR 30.0%
!! TGCTTTCTCTAGAATCAAAA+TGG - chr1_4:48609694-48609713 Msa0166980:three_prime_UTR 30.0%
!! TTTCTCTAGAATCAAAATGG+TGG - chr1_4:48609697-48609716 Msa0166980:three_prime_UTR 30.0%
!! TTCTCTAGAATCAAAATGGT+GGG - chr1_4:48609698-48609717 Msa0166980:three_prime_UTR 30.0%
TTTCTGACACCAAAAGAATA+TGG - chr1_4:48609897-48609916 Msa0166980:CDS 30.0%
!!! TTCCTCTTTTGTTTGTTTTG+GGG - chr1_4:48609967-48609986 Msa0166980:CDS 30.0%
TAAAACATCCACTGTGTATA+TGG + chr1_4:48610061-48610080 None:intergenic 30.0%
ATAGTGCCAAACATTAAGAA+AGG - chr1_4:48610231-48610250 Msa0166980:intron 30.0%
AAACATTAAGAAAGGAAGCA+GGG - chr1_4:48610239-48610258 Msa0166980:intron 30.0%
ACTGTACATACCAAACAAAA+AGG - chr1_4:48610460-48610479 Msa0166980:CDS 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr1_4:48610473-48610492 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG - chr1_4:48610591-48610610 Msa0166980:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr1_4:48610683-48610702 Msa0166980:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG + chr1_4:48610692-48610711 None:intergenic 30.0%
TAATACTAAACAAATGCAGG+AGG - chr1_4:48611288-48611307 Msa0166980:intron 30.0%
ACATACATTAAGATGTTGAG+AGG + chr1_4:48611525-48611544 None:intergenic 30.0%
ACGGTTAAAATGAAAAGAAG+AGG + chr1_4:48611555-48611574 None:intergenic 30.0%
! TTGATTTTCAGAAACAATGC+TGG - chr1_4:48611795-48611814 Msa0166980:CDS 30.0%
! GTTTCATTTTCTCAAGTAGA+AGG + chr1_4:48612018-48612037 None:intergenic 30.0%
! TGCCTACTAGTATTATGTTT+TGG - chr1_4:48612468-48612487 Msa0166980:intron 30.0%
! GCCTACTAGTATTATGTTTT+GGG - chr1_4:48612469-48612488 Msa0166980:intron 30.0%
! CCTACTAGTATTATGTTTTG+GGG - chr1_4:48612470-48612489 Msa0166980:intron 30.0%
!! CATTGTTGTTTATAGGAAGA+AGG - chr1_4:48612696-48612715 Msa0166980:intron 30.0%
TAACATTTGCAAACTTTCAC+CGG + chr1_4:48613060-48613079 None:intergenic 30.0%
!!! AGAGTTTTAAATAACCGTCA+TGG + chr1_4:48613083-48613102 None:intergenic 30.0%
ACTCTTAGGAAGAAAACTTT+GGG - chr1_4:48613312-48613331 Msa0166980:intron 30.0%
TTTCAAAGTCTTGATTGTCT+TGG - chr1_4:48613362-48613381 Msa0166980:intron 30.0%
! CTTATAGCTTATAAGTTGAG+TGG + chr1_4:48613418-48613437 None:intergenic 30.0%
! AGAAGAAGGCTTCTATTTTA+GGG + chr1_4:48613504-48613523 None:intergenic 30.0%
! AAGAAGAAGGCTTCTATTTT+AGG + chr1_4:48613505-48613524 None:intergenic 30.0%
GGGTTATTTAAATGGAAAAG+TGG - chr1_4:48613793-48613812 Msa0166980:five_prime_UTR 30.0%
AGCAAGGAAATTTGGAAAGA+GGG + chr1_4:48609441-48609460 None:intergenic 35.0%
TAGCAAGGAAATTTGGAAAG+AGG + chr1_4:48609442-48609461 None:intergenic 35.0%
! AATGAGGAAGGTATAGTATG+AGG + chr1_4:48609466-48609485 None:intergenic 35.0%
!!! AATGGTGGGTATTTTCTCTT+TGG - chr1_4:48609712-48609731 Msa0166980:three_prime_UTR 35.0%
AATCTCACTGCAATTATCAC+AGG - chr1_4:48609812-48609831 Msa0166980:three_prime_UTR 35.0%
CAAACAAAAGAGGAAAAGGA+AGG + chr1_4:48609962-48609981 None:intergenic 35.0%
TACCCCAAAACAAACAAAAG+AGG + chr1_4:48609972-48609991 None:intergenic 35.0%
!!! CTTTTGTTTGTTTTGGGGTA+TGG - chr1_4:48609972-48609991 Msa0166980:CDS 35.0%
TCATTTGTCCATATACACAG+TGG - chr1_4:48610050-48610069 Msa0166980:intron 35.0%
CTGCTTCCTTTCTTAATGTT+TGG + chr1_4:48610240-48610259 None:intergenic 35.0%
CAAACATTAAGAAAGGAAGC+AGG - chr1_4:48610238-48610257 Msa0166980:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr1_4:48610682-48610701 Msa0166980:intron 35.0%
TCGAGTTTGCGATACATATA+GGG + chr1_4:48611144-48611163 None:intergenic 35.0%
TAACAGACTTCACTGAACAA+AGG + chr1_4:48611467-48611486 None:intergenic 35.0%
CAATTCCATCTTGTGTTAGT+TGG + chr1_4:48611839-48611858 None:intergenic 35.0%
CAGTTTGCAACAAATCATCT+TGG - chr1_4:48611864-48611883 Msa0166980:CDS 35.0%
TCATCTTGGTATGTACTATG+TGG - chr1_4:48611878-48611897 Msa0166980:CDS 35.0%
CAAGTAGAAGGTTTGTCAAA+AGG + chr1_4:48612006-48612025 None:intergenic 35.0%
CATACCTACACTTATGAAGA+AGG - chr1_4:48612094-48612113 Msa0166980:intron 35.0%
AATGCCTTCTTCATAAGTGT+AGG + chr1_4:48612101-48612120 None:intergenic 35.0%
!! TTATGAAGAAGGCATTCGAT+TGG - chr1_4:48612105-48612124 Msa0166980:intron 35.0%
ATTGTAAAGGTAGTAGTCAC+TGG + chr1_4:48612187-48612206 None:intergenic 35.0%
TTTCAGTTACTCTGACAAGA+AGG - chr1_4:48612234-48612253 Msa0166980:intron 35.0%
! ATGTAGTATGTTGGCTAACT+TGG + chr1_4:48612272-48612291 None:intergenic 35.0%
CTCATTTGCATGTAGTATGT+TGG + chr1_4:48612281-48612300 None:intergenic 35.0%
CCCCAAAACATAATACTAGT+AGG + chr1_4:48612473-48612492 None:intergenic 35.0%
!! AAAGAAGAGTGTCTCATAAG+AGG + chr1_4:48612768-48612787 None:intergenic 35.0%
GTTTGCAAATGTTACCATGA+CGG - chr1_4:48613066-48613085 Msa0166980:intron 35.0%
GACTCTTAGGAAGAAAACTT+TGG - chr1_4:48613311-48613330 Msa0166980:intron 35.0%
!! GAAGAAGGCTTCTATTTTAG+GGG + chr1_4:48613503-48613522 None:intergenic 35.0%
AAAGCACACACAAAAGAAGA+AGG + chr1_4:48613518-48613537 None:intergenic 35.0%
AAAGTGGATGATTTCACACA+AGG - chr1_4:48613809-48613828 Msa0166980:five_prime_UTR 35.0%
ATGAGGCTAGCAAGGAAATT+TGG + chr1_4:48609449-48609468 None:intergenic 40.0%
! TAGAGAAAGCACACAAACCA+AGG + chr1_4:48609685-48609704 None:intergenic 40.0%
! GGGTATTTTCTCTTTGGTCA+CGG - chr1_4:48609718-48609737 Msa0166980:three_prime_UTR 40.0%
! GGTATTTTCTCTTTGGTCAC+GGG - chr1_4:48609719-48609738 Msa0166980:three_prime_UTR 40.0%
! AACTTGTTCAGCTGTTGTAG+AGG + chr1_4:48609771-48609790 None:intergenic 40.0%
ACAGCTGAACAAGTTACTGA+AGG - chr1_4:48609776-48609795 Msa0166980:three_prime_UTR 40.0%
GAAACAGAAACCGACAGATA+GGG + chr1_4:48610000-48610019 None:intergenic 40.0%
AGAAACAGAAACCGACAGAT+AGG + chr1_4:48610001-48610020 None:intergenic 40.0%
TGCTGCAACGTAATTCTAAG+AGG + chr1_4:48610500-48610519 None:intergenic 40.0%
AATTACGTTGCAGCAAACCT+TGG - chr1_4:48610505-48610524 Msa0166980:CDS 40.0%
ATTACGTTGCAGCAAACCTT+GGG - chr1_4:48610506-48610525 Msa0166980:CDS 40.0%
CTAATTTACGTTGAGTCCCA+AGG + chr1_4:48610525-48610544 None:intergenic 40.0%
!!! TTTTTTACATTGGCCCGAGT+CGG - chr1_4:48610751-48610770 Msa0166980:intron 40.0%
AAATTTGTCTAGTCCCGACT+CGG + chr1_4:48610768-48610787 None:intergenic 40.0%
TATGAGGGGTCAAATAAGCA+TGG - chr1_4:48611114-48611133 Msa0166980:CDS 40.0%
GTCGAGTTTGCGATACATAT+AGG + chr1_4:48611145-48611164 None:intergenic 40.0%
AAGAAACATGGAGTCTGCAA+AGG - chr1_4:48611380-48611399 Msa0166980:CDS 40.0%
CATCTTGTGTTAGTTGGAAG+GGG + chr1_4:48611833-48611852 None:intergenic 40.0%
CCATCTTGTGTTAGTTGGAA+GGG + chr1_4:48611834-48611853 None:intergenic 40.0%
TCCATCTTGTGTTAGTTGGA+AGG + chr1_4:48611835-48611854 None:intergenic 40.0%
TACTCTGACAAGAAGGCTTA+TGG - chr1_4:48612241-48612260 Msa0166980:intron 40.0%
!!! AGTATTATGTTTTGGGGCCA+TGG - chr1_4:48612476-48612495 Msa0166980:intron 40.0%
!!! GTATTATGTTTTGGGGCCAT+GGG - chr1_4:48612477-48612496 Msa0166980:intron 40.0%
CGTGTAGTGTAGAGTTTAGA+TGG + chr1_4:48612538-48612557 None:intergenic 40.0%
GAGGAGTCATTATTACTCCT+GGG + chr1_4:48612749-48612768 None:intergenic 40.0%
AGAGGAGTCATTATTACTCC+TGG + chr1_4:48612750-48612769 None:intergenic 40.0%
CTCTTCATCCAAGCTTGAAA+GGG - chr1_4:48613227-48613246 Msa0166980:intron 40.0%
TCTTCATCCAAGCTTGAAAG+GGG - chr1_4:48613228-48613247 Msa0166980:intron 40.0%
!!! GGTAACTGGGAAGTACTTTT+TGG - chr1_4:48613249-48613268 Msa0166980:intron 40.0%
! TTTGCGTCAAATGGACTCTT+AGG - chr1_4:48613298-48613317 Msa0166980:intron 40.0%
! TCCTTCTCTGTTGTTTGAAC+CGG - chr1_4:48613643-48613662 Msa0166980:five_prime_UTR 40.0%
GGTATAGTATGAGGCTAGCA+AGG + chr1_4:48609457-48609476 None:intergenic 45.0%
GTAGAGGATCCAAATCCACT+TGG + chr1_4:48609755-48609774 None:intergenic 45.0%
! TTTTTACATTGGCCCGAGTC+GGG - chr1_4:48610752-48610771 Msa0166980:intron 45.0%
AATTTGTCTAGTCCCGACTC+GGG + chr1_4:48610767-48610786 None:intergenic 45.0%
TGCAGACTCCATGTTTCTTG+CGG + chr1_4:48611379-48611398 None:intergenic 45.0%
! TCTAAGGCGTATCAACTCAG+TGG + chr1_4:48611701-48611720 None:intergenic 45.0%
CCCTTCCAACTAACACAAGA+TGG - chr1_4:48611831-48611850 Msa0166980:CDS 45.0%
AAACAATCCGCAAAAGCCAC+TGG - chr1_4:48612034-48612053 Msa0166980:intron 45.0%
! CTCAATTCCAGTGGCTTTTG+CGG + chr1_4:48612044-48612063 None:intergenic 45.0%
GCAAAAGCCACTGGAATTGA+GGG - chr1_4:48612043-48612062 Msa0166980:intron 45.0%
GATTCTACCCTCAATTCCAG+TGG + chr1_4:48612053-48612072 None:intergenic 45.0%
CATATGGAAGAATGTCCCAC+AGG - chr1_4:48612939-48612958 Msa0166980:intron 45.0%
CCTCATACACTCTTATGTCG+CGG + chr1_4:48613037-48613056 None:intergenic 45.0%
! GACATAAGAGTGTATGAGGC+CGG - chr1_4:48613038-48613057 Msa0166980:intron 45.0%
GCTCTTCATCCAAGCTTGAA+AGG - chr1_4:48613226-48613245 Msa0166980:intron 45.0%
CAAGCTTGAAAGGGGTAACT+GGG - chr1_4:48613236-48613255 Msa0166980:intron 45.0%
CCATTTGACGCAAATGCACT+TGG + chr1_4:48613292-48613311 None:intergenic 45.0%
CCAAGTGCATTTGCGTCAAA+TGG - chr1_4:48613289-48613308 Msa0166980:intron 45.0%
TCCGGTTCAAACAACAGAGA+AGG + chr1_4:48613647-48613666 None:intergenic 45.0%
!!! TATTCTTAATATATTTTTTT+CGG - chr1_4:48610631-48610650 Msa0166980:intron 5.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr1_4:48610714-48610733 None:intergenic 5.0%
TTTCTCTTTGGTCACGGGCA+TGG - chr1_4:48609724-48609743 Msa0166980:three_prime_UTR 50.0%
! ATGGCTGGACCAAGTGGATT+TGG - chr1_4:48609743-48609762 Msa0166980:three_prime_UTR 50.0%
GGGTATGGTACCCTATCTGT+CGG - chr1_4:48609987-48610006 Msa0166980:CDS 50.0%
ACAAATGCAGGAGGAGCAAG+TGG - chr1_4:48611297-48611316 Msa0166980:intron 50.0%
AGGAGCAAGTGGTATAGGCT+TGG - chr1_4:48611308-48611327 Msa0166980:intron 50.0%
! ACGAGTCTTGGCTCTTCGAA+AGG - chr1_4:48611338-48611357 Msa0166980:intron 50.0%
CATCATCGCCGCAAGAAACA+TGG - chr1_4:48611368-48611387 Msa0166980:CDS 50.0%
CGCAAAAGCCACTGGAATTG+AGG - chr1_4:48612042-48612061 Msa0166980:intron 50.0%
TGAGCTTTCTCGTCGCTTGA+AGG - chr1_4:48612297-48612316 Msa0166980:intron 50.0%
!! TCCTTTTAGGTACGTGCCCA+TGG + chr1_4:48612496-48612515 None:intergenic 50.0%
TACTCCTGGGTGTACTGAGT+TGG + chr1_4:48612736-48612755 None:intergenic 50.0%
! CCGCGACATAAGAGTGTATG+AGG - chr1_4:48613034-48613053 Msa0166980:intron 50.0%
CCAGTTACCCCTTTCAAGCT+TGG + chr1_4:48613238-48613257 None:intergenic 50.0%
CCAAGCTTGAAAGGGGTAAC+TGG - chr1_4:48613235-48613254 Msa0166980:intron 50.0%
GCAGGAGGAGCAAGTGGTAT+AGG - chr1_4:48611303-48611322 Msa0166980:intron 55.0%
CTTGGAGACAGCACGAGTCT+TGG - chr1_4:48611326-48611345 Msa0166980:intron 55.0%
GGACAACAAGTCTGCTCGAG+TGG - chr1_4:48611425-48611444 Msa0166980:intron 55.0%
TGAGAGGAAGATCGAGAGCG+AGG + chr1_4:48611509-48611528 None:intergenic 55.0%
GCCATGGGCACGTACCTAAA+AGG - chr1_4:48612492-48612511 Msa0166980:intron 55.0%
ACAGCCAACTCAGTACACCC+AGG - chr1_4:48612729-48612748 Msa0166980:intron 55.0%
ACACTCTTATGTCGCGGCTC+AGG + chr1_4:48613031-48613050 None:intergenic 55.0%
TCTTTGGTCACGGGCATGGC+TGG - chr1_4:48609728-48609747 Msa0166980:three_prime_UTR 60.0%
TTATGTCGCGGCTCAGGTCG+CGG + chr1_4:48613025-48613044 None:intergenic 60.0%
ACGGGCATGGCTGGACCAAG+TGG - chr1_4:48609737-48609756 Msa0166980:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 48609403 48613843 48609403 ID=Msa0166980;Name=Msa0166980
chr1_4 mRNA 48609403 48613843 48609403 ID=Msa0166980-mRNA-1;Parent=Msa0166980;Name=Msa0166980-mRNA-1;_AED=0.20;_eAED=0.20;_QI=310|1|1|1|0.77|0.7|10|404|323
chr1_4 exon 48609403 48609451 48609403 ID=Msa0166980-mRNA-1:exon:14236;Parent=Msa0166980-mRNA-1
chr1_4 exon 48609482 48609647 48609482 ID=Msa0166980-mRNA-1:exon:14235;Parent=Msa0166980-mRNA-1
chr1_4 exon 48609682 48610044 48609682 ID=Msa0166980-mRNA-1:exon:14234;Parent=Msa0166980-mRNA-1
chr1_4 exon 48610286 48610332 48610286 ID=Msa0166980-mRNA-1:exon:14233;Parent=Msa0166980-mRNA-1
chr1_4 exon 48610451 48610535 48610451 ID=Msa0166980-mRNA-1:exon:14232;Parent=Msa0166980-mRNA-1
chr1_4 exon 48610928 48611006 48610928 ID=Msa0166980-mRNA-1:exon:14231;Parent=Msa0166980-mRNA-1
chr1_4 exon 48611097 48611250 48611097 ID=Msa0166980-mRNA-1:exon:14230;Parent=Msa0166980-mRNA-1
chr1_4 exon 48611361 48611440 48611361 ID=Msa0166980-mRNA-1:exon:14229;Parent=Msa0166980-mRNA-1
chr1_4 exon 48611708 48611939 48611708 ID=Msa0166980-mRNA-1:exon:14228;Parent=Msa0166980-mRNA-1
chr1_4 exon 48613413 48613843 48613413 ID=Msa0166980-mRNA-1:exon:14227;Parent=Msa0166980-mRNA-1
chr1_4 five_prime_UTR 48613534 48613843 48613534 ID=Msa0166980-mRNA-1:five_prime_utr;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48613413 48613533 48613413 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48611708 48611939 48611708 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48611361 48611440 48611361 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48611097 48611250 48611097 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48610928 48611006 48610928 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48610451 48610535 48610451 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48610286 48610332 48610286 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 CDS 48609871 48610044 48609871 ID=Msa0166980-mRNA-1:cds;Parent=Msa0166980-mRNA-1
chr1_4 three_prime_UTR 48609682 48609870 48609682 ID=Msa0166980-mRNA-1:three_prime_utr;Parent=Msa0166980-mRNA-1
chr1_4 three_prime_UTR 48609482 48609647 48609482 ID=Msa0166980-mRNA-1:three_prime_utr;Parent=Msa0166980-mRNA-1
chr1_4 three_prime_UTR 48609403 48609451 48609403 ID=Msa0166980-mRNA-1:three_prime_utr;Parent=Msa0166980-mRNA-1
Gene Sequence

>Msa0166980

ATGGTGGGTATTTTCTCTTTGGTCACGGGCATGGCTGGACCAAGTGGATTTGGATCCTCTACAACAGCTGAACAAGTTACTGAAGGAGTTGATGCAAGCAATCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATAGGCTTGGAGACAGCACGAGTCTTGGCTCTTCGAAAGGCGCATGTCATCATCGCCGCAAGAAACATGGAGTCTGCAAAGGAAGCTAAACAAATTATACTAGAGGACAACAAGTCTGCTCGAGTGGACATAATGAAGCTCGACCTTTGTTCAGTGAAGTCTGTTAGATCGTTTGTTGAAAACTTCCTCGCTCTCGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTTATGTTCTGCCCCTTCCAACTAACACAAGATGGAATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTTTTGACAAACCTTCTACTTGAGAAAATGAAACAATCCGCAAAAGCCACTGGAATTGAGGGTAGAATCATAAATCTTTCATCAATTGCTCATACCTACACTTATGAAGAAGGCATTCGATTGGATAATATCAATGATCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAGTCCAAGTTAGCCAACATACTACATGCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAAGGTGTCAATATCACAGCCAACTCAGTACACCCAGGAGTAATAATGACTCCTCTTATGAGACACTCTTCTTTACTTATGAACTTCTTGAAGATGTTCACATTTTACATATGGAAGAATGTCCCACAGGGAGCTGCAACAACATGCTATGTTGCTCTTCATCCAAGCTTGAAAGGGGTAACTGGGAAGTACTTTTTGGATTGTAATGAGTTTCAACCAAGTGCATTTGCGTCAAATGGACTCTTAGGAAGAAAACTTTGGGATTTTAGCAACAAGTTGATCAATTCAATTTCAAAGTCTTGA

Protein sequence

>Msa0166980

MVGIFSLVTGMAGPSGFGSSTTAEQVTEGVDASNLTAIITGGASGIGLETARVLALRKAHVIIAARNMESAKEAKQIILEDNKSARVDIMKLDLCSVKSVRSFVENFLALDLPLNILINNAGVMFCPFQLTQDGIEMQFATNHLGHFLLTNLLLEKMKQSAKATGIEGRIINLSSIAHTYTYEEGIRLDNINDQIGYSDKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFYIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFQPSAFASNGLLGRKLWDFSNKLINSISKS*