AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225030 MtrunA17_Chr2g0331271 96.859 191 6 0 1 191 1 191 3.40e-138 383
Msa0225030 MtrunA17_Chr1g0148731 53.846 104 46 2 72 174 60 162 1.90e-24 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225030 AT3G16250.1 64.088 181 52 5 18 186 20 199 4.44e-77 229
Msa0225030 AT4G32590.1 53.846 104 46 2 72 174 70 172 1.94e-25 97.1
Msa0225030 AT4G32590.3 49.074 108 53 2 57 163 55 161 4.18e-19 80.9

Find 74 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGACATTATTATTCTTTA+TGG 0.056436 2_1:-75062696 Msa0225030:five_prime_UTR
CATTTCCTCATGTGCTATTT+TGG 0.116905 2_1:+75060793 None:intergenic
ACTCCTCTAAAACTCTAAAA+TGG 0.153224 2_1:+75060490 None:intergenic
CATGCTAATCTCCAATTCTT+TGG 0.246574 2_1:+75061600 None:intergenic
GTCAGAAAGCAACTGATATT+TGG 0.264267 2_1:-75060662 Msa0225030:three_prime_UTR
AGTGCCGACTGCTCTAATTT+TGG 0.281013 2_1:+75062423 None:intergenic
TGCACGTGGCATAACATAAT+TGG 0.309607 2_1:-75060772 Msa0225030:three_prime_UTR
GAGAGACGTGTGAATGCATT+AGG 0.321958 2_1:+75062496 None:intergenic
GACAAATGCAAAACCTATAG+AGG 0.334673 2_1:+75062351 None:intergenic
CCTTGTCCACTACAAGAAAA+TGG 0.347151 2_1:-75061008 Msa0225030:three_prime_UTR
TTATCTCATATAATTTGAAT+TGG 0.367948 2_1:+75062667 None:intergenic
AACTAGTGTTATGTTGTTGA+AGG 0.378823 2_1:+75062567 None:intergenic
GATTCTAATATTGAACTCTA+TGG 0.391241 2_1:-75062095 Msa0225030:CDS
TAGGGGTTAGTTTGAGTTGG+AGG 0.393377 2_1:+75062515 None:intergenic
TCTAATGACCCTCCCTCTAT+AGG 0.394740 2_1:-75062364 Msa0225030:CDS
AATCTTGTGCTTCTTGATCC+TGG 0.407919 2_1:-75061063 Msa0225030:three_prime_UTR
CTTGTAAAGAGTGTTGTGTT+TGG 0.421734 2_1:+75062448 None:intergenic
TGGAGTGTGTGTTTCATTTG+TGG 0.429047 2_1:+75062614 None:intergenic
TGCATGGAATTTGAGCTTAG+TGG 0.430235 2_1:+75062594 None:intergenic
CATTCATGTCCTTTCCACTC+TGG 0.430702 2_1:+75061394 None:intergenic
AGAGACGTGTGAATGCATTA+GGG 0.437849 2_1:+75062497 None:intergenic
TGCACATCTGGTGTTCCATC+TGG 0.437999 2_1:+75062164 None:intergenic
TATATATTTCATATCCATGT+TGG 0.448927 2_1:+75062733 None:intergenic
CATTAGGGGTTAGTTTGAGT+TGG 0.450485 2_1:+75062512 None:intergenic
ATTTGCTATTAGGTTCTTGA+AGG 0.451453 2_1:-75061836 Msa0225030:intron
CTCCTCTAAAACTCTAAAAT+GGG 0.454937 2_1:+75060491 None:intergenic
AGGATTCCAACCTTGTACAT+TGG 0.463397 2_1:-75060840 Msa0225030:three_prime_UTR
GATTCTAAGAGCATAATTAT+CGG 0.467437 2_1:-75060724 Msa0225030:three_prime_UTR
GCTGTACGATAATGCACATC+TGG 0.480063 2_1:+75062152 None:intergenic
TATTGTTATTGTAAGATAAG+TGG 0.482367 2_1:-75060516 Msa0225030:three_prime_UTR
GTGGGTGAAGCAGATTCTAC+AGG 0.486617 2_1:-75061567 Msa0225030:CDS
TTATTTCCAATGTACAAGGT+TGG 0.502984 2_1:+75060834 None:intergenic
CTATTAGGTTCTTGAAGGCA+AGG 0.503895 2_1:-75061831 Msa0225030:intron
GAAGCTTAGGAACATAATGT+TGG 0.511451 2_1:-75062117 Msa0225030:CDS
CGGCACTGTCCCTGAAAAGA+AGG 0.512597 2_1:-75062407 Msa0225030:CDS
CTTGTGGTGGACAGAAGCTT+AGG 0.512735 2_1:-75062130 Msa0225030:CDS
ATTGTTATTGTAAGATAAGT+GGG 0.514386 2_1:-75060515 Msa0225030:three_prime_UTR
ACATGAATGGAAATATGAAA+AGG 0.521149 2_1:-75061380 Msa0225030:CDS
CAGAGTGGAAAGGACATGAA+TGG 0.529406 2_1:-75061393 Msa0225030:CDS
GTACTTATTTCCAATGTACA+AGG 0.532016 2_1:+75060830 None:intergenic
TCTTGATCCTGGTGATAGCT+AGG 0.533485 2_1:-75061052 Msa0225030:three_prime_UTR
TTTCTGGTAGCTCAGTTCCA+TGG 0.547316 2_1:+75060912 None:intergenic
TGGAACTTGTGCTACATGTA+TGG 0.561485 2_1:-75061957 Msa0225030:CDS
TAGTCTGTGTTGCTACCAGA+TGG 0.569681 2_1:-75062179 Msa0225030:CDS
TGGCATAACATAATTGGTTG+AGG 0.572563 2_1:-75060766 Msa0225030:three_prime_UTR
TGGGTGAAGCAGATTCTACA+GGG 0.575014 2_1:-75061566 Msa0225030:CDS
ATGATCCAAAATAGCACATG+AGG 0.580565 2_1:-75060798 Msa0225030:three_prime_UTR
AGTAGTAAAACTTAACAAAG+TGG 0.587524 2_1:-75060629 Msa0225030:three_prime_UTR
GATCCTGGTGATAGCTAGGA+CGG 0.588930 2_1:-75061048 Msa0225030:three_prime_UTR
TCTTTCTCTTTGTCAGTGCG+AGG 0.589508 2_1:+75061797 None:intergenic
ATGGTCGAGTTTGAATCAAG+TGG 0.592731 2_1:+75060931 None:intergenic
TTAGCATGTCAAACAACTGT+GGG 0.604116 2_1:-75061585 Msa0225030:CDS
TACATTGGAAATAAGTACAA+AGG 0.610804 2_1:-75060825 Msa0225030:three_prime_UTR
TTGTGCTACATGTATGGTAG+AGG 0.614537 2_1:-75061951 Msa0225030:intron
AAACCGTCCTAGCTATCACC+AGG 0.614689 2_1:+75061045 None:intergenic
AGAACCAAAATTAGAGCAGT+CGG 0.615630 2_1:-75062427 Msa0225030:CDS
TGGTTGAGGTAAATGACACT+TGG 0.617626 2_1:-75060752 Msa0225030:three_prime_UTR
ACTTGATTCAAACTCGACCA+TGG 0.622490 2_1:-75060929 Msa0225030:three_prime_UTR
ACAAATGCAAAACCTATAGA+GGG 0.622761 2_1:+75062352 None:intergenic
GACTCAGCAGACTCTTTGTG+AGG 0.642468 2_1:-75061349 Msa0225030:exon
GTGCATTATCGTACAGCTTG+TGG 0.644594 2_1:-75062146 Msa0225030:CDS
CAACAATTACCAGAGTGGAA+AGG 0.648231 2_1:-75061403 Msa0225030:CDS
AAATGCAACGATTGATCACA+AGG 0.650416 2_1:+75060866 None:intergenic
TGAAGCAGATTCTACAGGGG+TGG 0.651914 2_1:-75061562 Msa0225030:intron
ATGCAAAACCTATAGAGGGA+GGG 0.653145 2_1:+75062356 None:intergenic
GAGACGTGTGAATGCATTAG+GGG 0.653996 2_1:+75062498 None:intergenic
AATGCAAAACCTATAGAGGG+AGG 0.655010 2_1:+75062355 None:intergenic
ATTAGCATGTCAAACAACTG+TGG 0.658456 2_1:-75061586 Msa0225030:CDS
TGATTCAACAATTACCAGAG+TGG 0.670303 2_1:-75061408 Msa0225030:CDS
CATTATCGTACAGCTTGTGG+TGG 0.680953 2_1:-75062143 Msa0225030:CDS
AGGGTCATTAGAGTCACTAG+TGG 0.691443 2_1:+75062375 None:intergenic
ATTATCGGTGCAAAAGCACG+TGG 0.697957 2_1:-75060709 Msa0225030:three_prime_UTR
AGCACATGAGGAAATGCACG+TGG 0.720914 2_1:-75060786 Msa0225030:three_prime_UTR
GGGTGAAGCAGATTCTACAG+GGG 0.770570 2_1:-75061565 Msa0225030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAAGCAATAAT+TGG - chr2_1:75061200-75061219 Msa0225030:three_prime_UTR 10.0%
!!! TTTATTTTTAAGCAATAATT+GGG - chr2_1:75061201-75061220 Msa0225030:three_prime_UTR 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG - chr2_1:75061394-75061413 Msa0225030:CDS 10.0%
!!! TTTTATTTTTAAGCAATAAT+TGG - chr2_1:75061200-75061219 Msa0225030:three_prime_UTR 10.0%
!!! TTTATTTTTAAGCAATAATT+GGG - chr2_1:75061201-75061220 Msa0225030:three_prime_UTR 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG - chr2_1:75061394-75061413 Msa0225030:CDS 10.0%
!! TTATCTCATATAATTTGAAT+TGG + chr2_1:75060576-75060595 None:intergenic 15.0%
!! TAATTCTACTTATATATAGT+TGG - chr2_1:75060987-75061006 Msa0225030:three_prime_UTR 15.0%
!! CAGATTAGAAATTAATAAAA+TGG - chr2_1:75061735-75061754 Msa0225030:intron 15.0%
!!! ATATTTTGTCAGTTAAATAT+GGG + chr2_1:75062650-75062669 None:intergenic 15.0%
!!! AATATTTTGTCAGTTAAATA+TGG + chr2_1:75062651-75062670 None:intergenic 15.0%
!!! GATTATTTTTATCAATTGAT+AGG - chr2_1:75062677-75062696 Msa0225030:five_prime_UTR 15.0%
!! TTATCTCATATAATTTGAAT+TGG + chr2_1:75060576-75060595 None:intergenic 15.0%
!! TAATTCTACTTATATATAGT+TGG - chr2_1:75060987-75061006 Msa0225030:three_prime_UTR 15.0%
!! CAGATTAGAAATTAATAAAA+TGG - chr2_1:75061735-75061754 Msa0225030:intron 15.0%
!!! ATATTTTGTCAGTTAAATAT+GGG + chr2_1:75062650-75062669 None:intergenic 15.0%
!!! AATATTTTGTCAGTTAAATA+TGG + chr2_1:75062651-75062670 None:intergenic 15.0%
!!! GATTATTTTTATCAATTGAT+AGG - chr2_1:75062677-75062696 Msa0225030:five_prime_UTR 15.0%
!! TATATATTTCATATCCATGT+TGG + chr2_1:75060510-75060529 None:intergenic 20.0%
!! TCAGACATTATTATTCTTTA+TGG - chr2_1:75060544-75060563 Msa0225030:three_prime_UTR 20.0%
!!! AATTAATCTCTAATGTTTTG+TGG - chr2_1:75061036-75061055 Msa0225030:three_prime_UTR 20.0%
!!! TTTTATAGAAACCAAAGAAT+TGG - chr2_1:75061629-75061648 Msa0225030:intron 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG - chr2_1:75061700-75061719 Msa0225030:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG - chr2_1:75061780-75061799 Msa0225030:intron 20.0%
!! ACTATTACACTAAAAATGTA+GGG + chr2_1:75062280-75062299 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG + chr2_1:75062281-75062300 None:intergenic 20.0%
!!! TATTGTTATTGTAAGATAAG+TGG - chr2_1:75062724-75062743 Msa0225030:five_prime_UTR 20.0%
!!! ATTGTTATTGTAAGATAAGT+GGG - chr2_1:75062725-75062744 Msa0225030:five_prime_UTR 20.0%
!! TATATATTTCATATCCATGT+TGG + chr2_1:75060510-75060529 None:intergenic 20.0%
!! TCAGACATTATTATTCTTTA+TGG - chr2_1:75060544-75060563 Msa0225030:three_prime_UTR 20.0%
!!! AATTAATCTCTAATGTTTTG+TGG - chr2_1:75061036-75061055 Msa0225030:three_prime_UTR 20.0%
!!! TTTTATAGAAACCAAAGAAT+TGG - chr2_1:75061629-75061648 Msa0225030:intron 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG - chr2_1:75061700-75061719 Msa0225030:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG - chr2_1:75061780-75061799 Msa0225030:intron 20.0%
!! ACTATTACACTAAAAATGTA+GGG + chr2_1:75062280-75062299 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG + chr2_1:75062281-75062300 None:intergenic 20.0%
!!! TATTGTTATTGTAAGATAAG+TGG - chr2_1:75062724-75062743 Msa0225030:five_prime_UTR 20.0%
!!! ATTGTTATTGTAAGATAAGT+GGG - chr2_1:75062725-75062744 Msa0225030:five_prime_UTR 20.0%
! GATTCTAATATTGAACTCTA+TGG - chr2_1:75061145-75061164 Msa0225030:three_prime_UTR 25.0%
! GTTAGTGAGATAATTACATA+AGG + chr2_1:75061172-75061191 None:intergenic 25.0%
!!! GGGTGATAATTATTTTATTG+TGG - chr2_1:75061221-75061240 Msa0225030:three_prime_UTR 25.0%
! AATTTAACAAAATTCTACCC+TGG + chr2_1:75061253-75061272 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG - chr2_1:75061254-75061273 Msa0225030:three_prime_UTR 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG - chr2_1:75061257-75061276 Msa0225030:three_prime_UTR 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG - chr2_1:75061258-75061277 Msa0225030:three_prime_UTR 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG - chr2_1:75061259-75061278 Msa0225030:three_prime_UTR 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG - chr2_1:75061456-75061475 Msa0225030:intron 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG - chr2_1:75061457-75061476 Msa0225030:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG - chr2_1:75061699-75061718 Msa0225030:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG - chr2_1:75061860-75061879 Msa0225030:intron 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG + chr2_1:75062081-75062100 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG + chr2_1:75062279-75062298 None:intergenic 25.0%
!! AAGATCTAGTAACAATTTTC+TGG + chr2_1:75062347-75062366 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG - chr2_1:75062415-75062434 Msa0225030:CDS 25.0%
!! GATTCTAAGAGCATAATTAT+CGG - chr2_1:75062516-75062535 Msa0225030:CDS 25.0%
! AGTAGTAAAACTTAACAAAG+TGG - chr2_1:75062611-75062630 Msa0225030:five_prime_UTR 25.0%
! GATTCTAATATTGAACTCTA+TGG - chr2_1:75061145-75061164 Msa0225030:three_prime_UTR 25.0%
! GTTAGTGAGATAATTACATA+AGG + chr2_1:75061172-75061191 None:intergenic 25.0%
!!! GGGTGATAATTATTTTATTG+TGG - chr2_1:75061221-75061240 Msa0225030:three_prime_UTR 25.0%
! AATTTAACAAAATTCTACCC+TGG + chr2_1:75061253-75061272 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG - chr2_1:75061254-75061273 Msa0225030:three_prime_UTR 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG - chr2_1:75061257-75061276 Msa0225030:three_prime_UTR 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG - chr2_1:75061258-75061277 Msa0225030:three_prime_UTR 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG - chr2_1:75061259-75061278 Msa0225030:three_prime_UTR 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG - chr2_1:75061456-75061475 Msa0225030:intron 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG - chr2_1:75061457-75061476 Msa0225030:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG - chr2_1:75061699-75061718 Msa0225030:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG - chr2_1:75061860-75061879 Msa0225030:intron 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG + chr2_1:75062081-75062100 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG + chr2_1:75062279-75062298 None:intergenic 25.0%
!! AAGATCTAGTAACAATTTTC+TGG + chr2_1:75062347-75062366 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG - chr2_1:75062415-75062434 Msa0225030:CDS 25.0%
!! GATTCTAAGAGCATAATTAT+CGG - chr2_1:75062516-75062535 Msa0225030:CDS 25.0%
! AGTAGTAAAACTTAACAAAG+TGG - chr2_1:75062611-75062630 Msa0225030:five_prime_UTR 25.0%
AACTAGTGTTATGTTGTTGA+AGG + chr2_1:75060676-75060695 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG + chr2_1:75060775-75060794 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG + chr2_1:75060891-75060910 None:intergenic 30.0%
!! ATTTTATTGTGGCTTTTTCC+AGG - chr2_1:75061232-75061251 Msa0225030:three_prime_UTR 30.0%
!! TTTTATTGTGGCTTTTTCCA+GGG - chr2_1:75061233-75061252 Msa0225030:three_prime_UTR 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG - chr2_1:75061260-75061279 Msa0225030:three_prime_UTR 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG - chr2_1:75061404-75061423 Msa0225030:CDS 30.0%
! ATTTTCATTCCATGTGATGT+AGG - chr2_1:75061806-75061825 Msa0225030:CDS 30.0%
! AATACACCATTTTCTTGTAG+TGG + chr2_1:75062241-75062260 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG + chr2_1:75062269-75062288 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG + chr2_1:75062409-75062428 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG + chr2_1:75062413-75062432 None:intergenic 30.0%
! TTTCTGACACGTTTTCATTT+GGG + chr2_1:75062566-75062585 None:intergenic 30.0%
! TTTTGTCAGTTAAATATGGG+TGG + chr2_1:75062647-75062666 None:intergenic 30.0%
AACTAGTGTTATGTTGTTGA+AGG + chr2_1:75060676-75060695 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG + chr2_1:75060775-75060794 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG + chr2_1:75060891-75060910 None:intergenic 30.0%
!! ATTTTATTGTGGCTTTTTCC+AGG - chr2_1:75061232-75061251 Msa0225030:three_prime_UTR 30.0%
!! TTTTATTGTGGCTTTTTCCA+GGG - chr2_1:75061233-75061252 Msa0225030:three_prime_UTR 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG - chr2_1:75061260-75061279 Msa0225030:three_prime_UTR 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG - chr2_1:75061404-75061423 Msa0225030:CDS 30.0%
! ATTTTCATTCCATGTGATGT+AGG - chr2_1:75061806-75061825 Msa0225030:CDS 30.0%
! AATACACCATTTTCTTGTAG+TGG + chr2_1:75062241-75062260 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG + chr2_1:75062269-75062288 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG + chr2_1:75062409-75062428 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG + chr2_1:75062413-75062432 None:intergenic 30.0%
! TTTCTGACACGTTTTCATTT+GGG + chr2_1:75062566-75062585 None:intergenic 30.0%
! TTTTGTCAGTTAAATATGGG+TGG + chr2_1:75062647-75062666 None:intergenic 30.0%
! TGTTGTTGAAGGATTTTGCA+TGG + chr2_1:75060665-75060684 None:intergenic 35.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG + chr2_1:75060795-75060814 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG - chr2_1:75060813-75060832 Msa0225030:three_prime_UTR 35.0%
! TCTCTGAATCCTTCTTTTCA+GGG + chr2_1:75060845-75060864 None:intergenic 35.0%
GACAAATGCAAAACCTATAG+AGG + chr2_1:75060892-75060911 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG - chr2_1:75061123-75061142 Msa0225030:three_prime_UTR 35.0%
ATGTGAAATGTGAACTCTTG+TGG - chr2_1:75061572-75061591 Msa0225030:CDS 35.0%
CATGCTAATCTCCAATTCTT+TGG + chr2_1:75061643-75061662 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG - chr2_1:75061654-75061673 Msa0225030:intron 35.0%
TTAGCATGTCAAACAACTGT+GGG - chr2_1:75061655-75061674 Msa0225030:intron 35.0%
TGATTCAACAATTACCAGAG+TGG - chr2_1:75061832-75061851 Msa0225030:intron 35.0%
AAATGCAACGATTGATCACA+AGG + chr2_1:75062377-75062396 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG - chr2_1:75062380-75062399 Msa0225030:CDS 35.0%
ATGATCCAAAATAGCACATG+AGG - chr2_1:75062442-75062461 Msa0225030:CDS 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG + chr2_1:75062450-75062469 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG - chr2_1:75062474-75062493 Msa0225030:CDS 35.0%
! CTTTCTGACACGTTTTCATT+TGG + chr2_1:75062567-75062586 None:intergenic 35.0%
GTCAGAAAGCAACTGATATT+TGG - chr2_1:75062578-75062597 Msa0225030:five_prime_UTR 35.0%
! TGTTGTTGAAGGATTTTGCA+TGG + chr2_1:75060665-75060684 None:intergenic 35.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG + chr2_1:75060795-75060814 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG - chr2_1:75060813-75060832 Msa0225030:three_prime_UTR 35.0%
! TCTCTGAATCCTTCTTTTCA+GGG + chr2_1:75060845-75060864 None:intergenic 35.0%
GACAAATGCAAAACCTATAG+AGG + chr2_1:75060892-75060911 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG - chr2_1:75061123-75061142 Msa0225030:three_prime_UTR 35.0%
ATGTGAAATGTGAACTCTTG+TGG - chr2_1:75061572-75061591 Msa0225030:CDS 35.0%
CATGCTAATCTCCAATTCTT+TGG + chr2_1:75061643-75061662 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG - chr2_1:75061654-75061673 Msa0225030:intron 35.0%
TTAGCATGTCAAACAACTGT+GGG - chr2_1:75061655-75061674 Msa0225030:intron 35.0%
TGATTCAACAATTACCAGAG+TGG - chr2_1:75061832-75061851 Msa0225030:intron 35.0%
AAATGCAACGATTGATCACA+AGG + chr2_1:75062377-75062396 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG - chr2_1:75062380-75062399 Msa0225030:CDS 35.0%
ATGATCCAAAATAGCACATG+AGG - chr2_1:75062442-75062461 Msa0225030:CDS 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG + chr2_1:75062450-75062469 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG - chr2_1:75062474-75062493 Msa0225030:CDS 35.0%
! CTTTCTGACACGTTTTCATT+TGG + chr2_1:75062567-75062586 None:intergenic 35.0%
GTCAGAAAGCAACTGATATT+TGG - chr2_1:75062578-75062597 Msa0225030:five_prime_UTR 35.0%
TGGAGTGTGTGTTTCATTTG+TGG + chr2_1:75060629-75060648 None:intergenic 40.0%
TGCATGGAATTTGAGCTTAG+TGG + chr2_1:75060649-75060668 None:intergenic 40.0%
!! CATTAGGGGTTAGTTTGAGT+TGG + chr2_1:75060731-75060750 None:intergenic 40.0%
AGAGACGTGTGAATGCATTA+GGG + chr2_1:75060746-75060765 None:intergenic 40.0%
! GTCTCTGAATCCTTCTTTTC+AGG + chr2_1:75060846-75060865 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG + chr2_1:75060887-75060906 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG + chr2_1:75060888-75060907 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG - chr2_1:75061283-75061302 Msa0225030:three_prime_UTR 40.0%
TTGTGCTACATGTATGGTAG+AGG - chr2_1:75061289-75061308 Msa0225030:three_prime_UTR 40.0%
CTATTAGGTTCTTGAAGGCA+AGG - chr2_1:75061409-75061428 Msa0225030:CDS 40.0%
GAATCACAACCTACATCACA+TGG + chr2_1:75061818-75061837 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG - chr2_1:75061837-75061856 Msa0225030:intron 40.0%
AATCTTGTGCTTCTTGATCC+TGG - chr2_1:75062177-75062196 Msa0225030:CDS 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG - chr2_1:75062201-75062220 Msa0225030:intron 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG + chr2_1:75062235-75062254 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG - chr2_1:75062232-75062251 Msa0225030:intron 40.0%
ATGGTCGAGTTTGAATCAAG+TGG + chr2_1:75062312-75062331 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG - chr2_1:75062311-75062330 Msa0225030:intron 40.0%
AGGATTCCAACCTTGTACAT+TGG - chr2_1:75062400-75062419 Msa0225030:CDS 40.0%
TGCACGTGGCATAACATAAT+TGG - chr2_1:75062468-75062487 Msa0225030:CDS 40.0%
TGGTTGAGGTAAATGACACT+TGG - chr2_1:75062488-75062507 Msa0225030:CDS 40.0%
TGGAGTGTGTGTTTCATTTG+TGG + chr2_1:75060629-75060648 None:intergenic 40.0%
TGCATGGAATTTGAGCTTAG+TGG + chr2_1:75060649-75060668 None:intergenic 40.0%
!! CATTAGGGGTTAGTTTGAGT+TGG + chr2_1:75060731-75060750 None:intergenic 40.0%
AGAGACGTGTGAATGCATTA+GGG + chr2_1:75060746-75060765 None:intergenic 40.0%
! GTCTCTGAATCCTTCTTTTC+AGG + chr2_1:75060846-75060865 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG + chr2_1:75060887-75060906 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG + chr2_1:75060888-75060907 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG - chr2_1:75061283-75061302 Msa0225030:three_prime_UTR 40.0%
TTGTGCTACATGTATGGTAG+AGG - chr2_1:75061289-75061308 Msa0225030:three_prime_UTR 40.0%
CTATTAGGTTCTTGAAGGCA+AGG - chr2_1:75061409-75061428 Msa0225030:CDS 40.0%
GAATCACAACCTACATCACA+TGG + chr2_1:75061818-75061837 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG - chr2_1:75061837-75061856 Msa0225030:intron 40.0%
AATCTTGTGCTTCTTGATCC+TGG - chr2_1:75062177-75062196 Msa0225030:CDS 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG - chr2_1:75062201-75062220 Msa0225030:intron 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG + chr2_1:75062235-75062254 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG - chr2_1:75062232-75062251 Msa0225030:intron 40.0%
ATGGTCGAGTTTGAATCAAG+TGG + chr2_1:75062312-75062331 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG - chr2_1:75062311-75062330 Msa0225030:intron 40.0%
AGGATTCCAACCTTGTACAT+TGG - chr2_1:75062400-75062419 Msa0225030:CDS 40.0%
TGCACGTGGCATAACATAAT+TGG - chr2_1:75062468-75062487 Msa0225030:CDS 40.0%
TGGTTGAGGTAAATGACACT+TGG - chr2_1:75062488-75062507 Msa0225030:CDS 40.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG + chr2_1:75060728-75060747 None:intergenic 45.0%
GAGACGTGTGAATGCATTAG+GGG + chr2_1:75060745-75060764 None:intergenic 45.0%
GAGAGACGTGTGAATGCATT+AGG + chr2_1:75060747-75060766 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG + chr2_1:75060820-75060839 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG + chr2_1:75060868-75060887 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG - chr2_1:75060876-75060895 Msa0225030:three_prime_UTR 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG - chr2_1:75061061-75061080 Msa0225030:three_prime_UTR 45.0%
GCTGTACGATAATGCACATC+TGG + chr2_1:75061091-75061110 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG - chr2_1:75061094-75061113 Msa0225030:three_prime_UTR 45.0%
CATTATCGTACAGCTTGTGG+TGG - chr2_1:75061097-75061116 Msa0225030:three_prime_UTR 45.0%
TTGTTAAATTGTGGAGGGGG+TGG - chr2_1:75061263-75061282 Msa0225030:three_prime_UTR 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG + chr2_1:75061446-75061465 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG - chr2_1:75061674-75061693 Msa0225030:intron 45.0%
CATTCATGTCCTTTCCACTC+TGG + chr2_1:75061849-75061868 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG - chr2_1:75061847-75061866 Msa0225030:intron 45.0%
TCTTGATCCTGGTGATAGCT+AGG - chr2_1:75062188-75062207 Msa0225030:intron 45.0%
! TTTCTGGTAGCTCAGTTCCA+TGG + chr2_1:75062331-75062350 None:intergenic 45.0%
! ATTATCGGTGCAAAAGCACG+TGG - chr2_1:75062531-75062550 Msa0225030:exon 45.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG + chr2_1:75060728-75060747 None:intergenic 45.0%
GAGACGTGTGAATGCATTAG+GGG + chr2_1:75060745-75060764 None:intergenic 45.0%
GAGAGACGTGTGAATGCATT+AGG + chr2_1:75060747-75060766 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG + chr2_1:75060820-75060839 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG + chr2_1:75060868-75060887 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG - chr2_1:75060876-75060895 Msa0225030:three_prime_UTR 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG - chr2_1:75061061-75061080 Msa0225030:three_prime_UTR 45.0%
GCTGTACGATAATGCACATC+TGG + chr2_1:75061091-75061110 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG - chr2_1:75061094-75061113 Msa0225030:three_prime_UTR 45.0%
CATTATCGTACAGCTTGTGG+TGG - chr2_1:75061097-75061116 Msa0225030:three_prime_UTR 45.0%
TTGTTAAATTGTGGAGGGGG+TGG - chr2_1:75061263-75061282 Msa0225030:three_prime_UTR 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG + chr2_1:75061446-75061465 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG - chr2_1:75061674-75061693 Msa0225030:intron 45.0%
CATTCATGTCCTTTCCACTC+TGG + chr2_1:75061849-75061868 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG - chr2_1:75061847-75061866 Msa0225030:intron 45.0%
TCTTGATCCTGGTGATAGCT+AGG - chr2_1:75062188-75062207 Msa0225030:intron 45.0%
! TTTCTGGTAGCTCAGTTCCA+TGG + chr2_1:75062331-75062350 None:intergenic 45.0%
! ATTATCGGTGCAAAAGCACG+TGG - chr2_1:75062531-75062550 Msa0225030:exon 45.0%
TGCACATCTGGTGTTCCATC+TGG + chr2_1:75061079-75061098 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG - chr2_1:75061110-75061129 Msa0225030:three_prime_UTR 50.0%
GTGGGTGAAGCAGATTCTAC+AGG - chr2_1:75061673-75061692 Msa0225030:intron 50.0%
GGGTGAAGCAGATTCTACAG+GGG - chr2_1:75061675-75061694 Msa0225030:intron 50.0%
TGAAGCAGATTCTACAGGGG+TGG - chr2_1:75061678-75061697 Msa0225030:intron 50.0%
GACTCAGCAGACTCTTTGTG+AGG - chr2_1:75061891-75061910 Msa0225030:intron 50.0%
GATCCTGGTGATAGCTAGGA+CGG - chr2_1:75062192-75062211 Msa0225030:intron 50.0%
AAACCGTCCTAGCTATCACC+AGG + chr2_1:75062198-75062217 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG - chr2_1:75062454-75062473 Msa0225030:CDS 50.0%
TGCACATCTGGTGTTCCATC+TGG + chr2_1:75061079-75061098 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG - chr2_1:75061110-75061129 Msa0225030:three_prime_UTR 50.0%
GTGGGTGAAGCAGATTCTAC+AGG - chr2_1:75061673-75061692 Msa0225030:intron 50.0%
GGGTGAAGCAGATTCTACAG+GGG - chr2_1:75061675-75061694 Msa0225030:intron 50.0%
TGAAGCAGATTCTACAGGGG+TGG - chr2_1:75061678-75061697 Msa0225030:intron 50.0%
GACTCAGCAGACTCTTTGTG+AGG - chr2_1:75061891-75061910 Msa0225030:intron 50.0%
GATCCTGGTGATAGCTAGGA+CGG - chr2_1:75062192-75062211 Msa0225030:intron 50.0%
AAACCGTCCTAGCTATCACC+AGG + chr2_1:75062198-75062217 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG - chr2_1:75062454-75062473 Msa0225030:CDS 50.0%
CGGCACTGTCCCTGAAAAGA+AGG - chr2_1:75060833-75060852 Msa0225030:three_prime_UTR 55.0%
CGGCACTGTCCCTGAAAAGA+AGG - chr2_1:75060833-75060852 Msa0225030:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75060498 75062764 75060498 ID=Msa0225030;Name=Msa0225030
chr2_1 mRNA 75060498 75062764 75060498 ID=Msa0225030-mRNA-1;Parent=Msa0225030;Name=Msa0225030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=219|1|1|1|1|1|6|853|191
chr2_1 exon 75060498 75061434 75060498 ID=Msa0225030-mRNA-1:exon:22409;Parent=Msa0225030-mRNA-1
chr2_1 exon 75061563 75061625 75061563 ID=Msa0225030-mRNA-1:exon:22408;Parent=Msa0225030-mRNA-1
chr2_1 exon 75061784 75061846 75061784 ID=Msa0225030-mRNA-1:exon:22407;Parent=Msa0225030-mRNA-1
chr2_1 exon 75061952 75062008 75061952 ID=Msa0225030-mRNA-1:exon:22406;Parent=Msa0225030-mRNA-1
chr2_1 exon 75062088 75062198 75062088 ID=Msa0225030-mRNA-1:exon:22405;Parent=Msa0225030-mRNA-1
chr2_1 exon 75062348 75062764 75062348 ID=Msa0225030-mRNA-1:exon:22404;Parent=Msa0225030-mRNA-1
chr2_1 five_prime_UTR 75062546 75062764 75062546 ID=Msa0225030-mRNA-1:five_prime_utr;Parent=Msa0225030-mRNA-1
chr2_1 CDS 75062348 75062545 75062348 ID=Msa0225030-mRNA-1:cds;Parent=Msa0225030-mRNA-1
chr2_1 CDS 75062088 75062198 75062088 ID=Msa0225030-mRNA-1:cds;Parent=Msa0225030-mRNA-1
chr2_1 CDS 75061952 75062008 75061952 ID=Msa0225030-mRNA-1:cds;Parent=Msa0225030-mRNA-1
chr2_1 CDS 75061784 75061846 75061784 ID=Msa0225030-mRNA-1:cds;Parent=Msa0225030-mRNA-1
chr2_1 CDS 75061563 75061625 75061563 ID=Msa0225030-mRNA-1:cds;Parent=Msa0225030-mRNA-1
chr2_1 CDS 75061351 75061434 75061351 ID=Msa0225030-mRNA-1:cds;Parent=Msa0225030-mRNA-1
chr2_1 three_prime_UTR 75060498 75061350 75060498 ID=Msa0225030-mRNA-1:three_prime_utr;Parent=Msa0225030-mRNA-1
Gene Sequence

>Msa0225030

ATGTCACTCCTCCAACTCAAACTAACCCCTAATGCATTCACACGTCTCTCTTCTTCCTCACATAAAAAATTCAGACCAAACACAACACTCTTTACAAGAACCAAAATTAGAGCAGTCGGCACTGTCCCTGAAAAGAAGGATTCAGAGACCACTAGTGACTCTAATGACCCTCCCTCTATAGGTTTTGCATTTGTCAGTTCTGTGTTGCTACCAGATGGAACACCAGATGTGCATTATCGTACAGCTTGTGGTGGACAGAAGCTTAGGAACATAATGTTGGATTCTAATATTGAACTCTATGGACCTTATGGTAGAATTTTGTTAAATTGTGGAGGGGGTGGAACTTGTGCTACATGTATGGTAGAGGTTCTTGAAGGCAAGGAGCTTCTGAGTCCTCGCACTGACAAAGAGAAAGAAAAACTTAAGAGGAAACCAAAGAATTGGAGATTAGCATGTCAAACAACTGTGGGTGAAGCAGATTCTACAGGGGTGGTTGTGATTCAACAATTACCAGAGTGGAAAGGACATGAATGGAAATATGAAAAGGATGATGATGACTCAGCAGACTCTTTGTGA

Protein sequence

>Msa0225030

MSLLQLKLTPNAFTRLSSSSHKKFRPNTTLFTRTKIRAVGTVPEKKDSETTSDSNDPPSIGFAFVSSVLLPDGTPDVHYRTACGGQKLRNIMLDSNIELYGPYGRILLNCGGGGTCATCMVEVLEGKELLSPRTDKEKEKLKRKPKNWRLACQTTVGEADSTGVVVIQQLPEWKGHEWKYEKDDDDSADSL*