AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0224980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0224980 MtrunA17_Chr2g0331271 96.859 191 6 0 1 191 1 191 3.40e-138 383
Msa0224980 MtrunA17_Chr1g0148731 53.846 104 46 2 72 174 60 162 1.90e-24 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0224980 AT3G16250.1 64.088 181 52 5 18 186 20 199 4.44e-77 229
Msa0224980 AT4G32590.1 53.846 104 46 2 72 174 70 172 1.94e-25 97.1
Msa0224980 AT4G32590.3 49.074 108 53 2 57 163 55 161 4.18e-19 80.9

Find 75 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGACATTATTATTCTTTA+TGG 0.056436 2_1:-75037548 Msa0224980:five_prime_UTR
CATTTCCTCATGTGCTATTT+TGG 0.116905 2_1:+75035642 None:intergenic
ACTCCTCTAAAACTCTAAAA+TGG 0.153224 2_1:+75035339 None:intergenic
CATGCTAATCTCCAATTCTT+TGG 0.246574 2_1:+75036450 None:intergenic
GTCAGAAAGCAACTGATATT+TGG 0.264267 2_1:-75035511 Msa0224980:three_prime_UTR
AGTGCCGACTGCTCTAATTT+TGG 0.281013 2_1:+75037275 None:intergenic
TGCACGTGGCATAACATAAT+TGG 0.309607 2_1:-75035621 Msa0224980:three_prime_UTR
GAGAGACGTGTGAATGCATT+AGG 0.321958 2_1:+75037348 None:intergenic
GACAAATGCAAAACCTATAG+AGG 0.334673 2_1:+75037203 None:intergenic
CCTTGTCCACTACAAGAAAA+TGG 0.347151 2_1:-75035857 Msa0224980:three_prime_UTR
TTATCTCATATAATTTGAAT+TGG 0.367948 2_1:+75037519 None:intergenic
AACTAGTGTTATGTTGTTGA+AGG 0.378823 2_1:+75037419 None:intergenic
GATTCTAATATTGAACTCTA+TGG 0.391241 2_1:-75036947 Msa0224980:CDS
TAGGGGTTAGTTTGAGTTGG+AGG 0.393377 2_1:+75037367 None:intergenic
TCTAATGACCCTCCCTCTAT+AGG 0.394740 2_1:-75037216 Msa0224980:CDS
AATCTTGTGCTTCTTGATCC+TGG 0.407919 2_1:-75035912 Msa0224980:three_prime_UTR
CTTGTAAAGAGTGTTGTGTT+TGG 0.421734 2_1:+75037300 None:intergenic
TGGAGTGTGTGTTTCATTTG+TGG 0.429047 2_1:+75037466 None:intergenic
TGCATGGAATTTGAGCTTAG+TGG 0.430235 2_1:+75037446 None:intergenic
CATTCATGTCCTTTCCACTC+TGG 0.430702 2_1:+75036244 None:intergenic
AGAGACGTGTGAATGCATTA+GGG 0.437849 2_1:+75037349 None:intergenic
TGCACATCTGGTGTTCCATC+TGG 0.437999 2_1:+75037016 None:intergenic
TATATATTTCATATCCATGT+TGG 0.448927 2_1:+75037585 None:intergenic
CATTAGGGGTTAGTTTGAGT+TGG 0.450485 2_1:+75037364 None:intergenic
ATTTGCTATTAGGTTCTTGA+AGG 0.451453 2_1:-75036687 Msa0224980:intron
CTCCTCTAAAACTCTAAAAT+GGG 0.454937 2_1:+75035340 None:intergenic
AGGATTCCAACCTTGTACAT+TGG 0.463397 2_1:-75035689 Msa0224980:three_prime_UTR
GATTCTAAGAGCATAATTAT+CGG 0.467437 2_1:-75035573 Msa0224980:three_prime_UTR
GCTGTACGATAATGCACATC+TGG 0.480063 2_1:+75037004 None:intergenic
TATTGTTATTGTAAGATAAG+TGG 0.482367 2_1:-75035365 Msa0224980:three_prime_UTR
GTGGGTGAAGCAGATTCTAC+AGG 0.486617 2_1:-75036417 Msa0224980:CDS
TTATTTCCAATGTACAAGGT+TGG 0.502984 2_1:+75035683 None:intergenic
CTATTAGGTTCTTGAAGGCA+AGG 0.503895 2_1:-75036682 Msa0224980:intron
GAAGCTTAGGAACATAATGT+TGG 0.511451 2_1:-75036969 Msa0224980:CDS
CGGCACTGTCCCTGAAAAGA+AGG 0.512597 2_1:-75037259 Msa0224980:CDS
CTTGTGGTGGACAGAAGCTT+AGG 0.512735 2_1:-75036982 Msa0224980:CDS
ATTGTTATTGTAAGATAAGT+GGG 0.514386 2_1:-75035364 Msa0224980:three_prime_UTR
ACATGAATGGAAATATGAAA+AGG 0.521149 2_1:-75036230 Msa0224980:CDS
CAGAGTGGAAAGGACATGAA+TGG 0.529406 2_1:-75036243 Msa0224980:CDS
GTACTTATTTCCAATGTACA+AGG 0.532016 2_1:+75035679 None:intergenic
TCTTGATCCTGGTGATAGCT+AGG 0.533485 2_1:-75035901 Msa0224980:three_prime_UTR
TTTCTGGTAGCTCAGTTCCA+TGG 0.547316 2_1:+75035761 None:intergenic
TGGAACTTGTGCTACATGTA+TGG 0.561485 2_1:-75036809 Msa0224980:CDS
TAGTCTGTGTTGCTACCAGA+TGG 0.569681 2_1:-75037031 Msa0224980:CDS
TGGCATAACATAATTGGTTG+AGG 0.572563 2_1:-75035615 Msa0224980:three_prime_UTR
TGGGTGAAGCAGATTCTACA+GGG 0.575014 2_1:-75036416 Msa0224980:CDS
ATGATCCAAAATAGCACATG+AGG 0.580565 2_1:-75035647 Msa0224980:three_prime_UTR
TTATGTCTTTATCTCCAACA+TGG 0.586390 2_1:-75037599 Msa0224980:five_prime_UTR
AGTAGTAAAACTTAACAAAG+TGG 0.587524 2_1:-75035478 Msa0224980:three_prime_UTR
GATCCTGGTGATAGCTAGGA+CGG 0.588930 2_1:-75035897 Msa0224980:three_prime_UTR
TCTTTCTCTTTGTCAGTGCG+AGG 0.589508 2_1:+75036648 None:intergenic
ATGGTCGAGTTTGAATCAAG+TGG 0.592731 2_1:+75035780 None:intergenic
TTAGCATGTCAAACAACTGT+GGG 0.604116 2_1:-75036435 Msa0224980:CDS
TACATTGGAAATAAGTACAA+AGG 0.610804 2_1:-75035674 Msa0224980:three_prime_UTR
TTGTGCTACATGTATGGTAG+AGG 0.614537 2_1:-75036803 Msa0224980:intron
AAACCGTCCTAGCTATCACC+AGG 0.614689 2_1:+75035894 None:intergenic
AGAACCAAAATTAGAGCAGT+CGG 0.615630 2_1:-75037279 Msa0224980:CDS
TGGTTGAGGTAAATGACACT+TGG 0.617626 2_1:-75035601 Msa0224980:three_prime_UTR
ACTTGATTCAAACTCGACCA+TGG 0.622490 2_1:-75035778 Msa0224980:three_prime_UTR
ACAAATGCAAAACCTATAGA+GGG 0.622761 2_1:+75037204 None:intergenic
GACTCAGCAGACTCTTTGTG+AGG 0.642468 2_1:-75036199 Msa0224980:exon
GTGCATTATCGTACAGCTTG+TGG 0.644594 2_1:-75036998 Msa0224980:CDS
CAACAATTACCAGAGTGGAA+AGG 0.648231 2_1:-75036253 Msa0224980:CDS
AAATGCAACGATTGATCACA+AGG 0.650416 2_1:+75035715 None:intergenic
TGAAGCAGATTCTACAGGGG+TGG 0.651914 2_1:-75036412 Msa0224980:intron
ATGCAAAACCTATAGAGGGA+GGG 0.653145 2_1:+75037208 None:intergenic
GAGACGTGTGAATGCATTAG+GGG 0.653996 2_1:+75037350 None:intergenic
AATGCAAAACCTATAGAGGG+AGG 0.655010 2_1:+75037207 None:intergenic
ATTAGCATGTCAAACAACTG+TGG 0.658456 2_1:-75036436 Msa0224980:CDS
TGATTCAACAATTACCAGAG+TGG 0.670303 2_1:-75036258 Msa0224980:CDS
CATTATCGTACAGCTTGTGG+TGG 0.680953 2_1:-75036995 Msa0224980:CDS
AGGGTCATTAGAGTCACTAG+TGG 0.691443 2_1:+75037227 None:intergenic
ATTATCGGTGCAAAAGCACG+TGG 0.697957 2_1:-75035558 Msa0224980:three_prime_UTR
AGCACATGAGGAAATGCACG+TGG 0.720914 2_1:-75035635 Msa0224980:three_prime_UTR
GGGTGAAGCAGATTCTACAG+GGG 0.770570 2_1:-75036415 Msa0224980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAAGCAATAAT+TGG - chr2_1:75036056-75036075 Msa0224980:three_prime_UTR 10.0%
!!! TTTATTTTTAAGCAATAATT+GGG - chr2_1:75036057-75036076 Msa0224980:three_prime_UTR 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG - chr2_1:75036251-75036270 Msa0224980:CDS 10.0%
!!! TTTTATTTTTAAGCAATAAT+TGG - chr2_1:75036056-75036075 Msa0224980:three_prime_UTR 10.0%
!!! TTTATTTTTAAGCAATAATT+GGG - chr2_1:75036057-75036076 Msa0224980:three_prime_UTR 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG - chr2_1:75036251-75036270 Msa0224980:CDS 10.0%
!! TTATCTCATATAATTTGAAT+TGG + chr2_1:75035432-75035451 None:intergenic 15.0%
!! TAATTCTACTTATATATAGT+TGG - chr2_1:75035843-75035862 Msa0224980:three_prime_UTR 15.0%
!!! AATTAATGTCTAATGTTTTA+TGG - chr2_1:75035892-75035911 Msa0224980:three_prime_UTR 15.0%
!! CAGATTAGAAATTAATAAAA+TGG - chr2_1:75036593-75036612 Msa0224980:intron 15.0%
!!! ATATTTTGTCAGTTAAATAT+GGG + chr2_1:75037509-75037528 None:intergenic 15.0%
!!! AATATTTTGTCAGTTAAATA+TGG + chr2_1:75037510-75037529 None:intergenic 15.0%
!!! GATTATTTTTATCAATTGAT+AGG - chr2_1:75037536-75037555 Msa0224980:five_prime_UTR 15.0%
!! TTATCTCATATAATTTGAAT+TGG + chr2_1:75035432-75035451 None:intergenic 15.0%
!! TAATTCTACTTATATATAGT+TGG - chr2_1:75035843-75035862 Msa0224980:three_prime_UTR 15.0%
!!! AATTAATGTCTAATGTTTTA+TGG - chr2_1:75035892-75035911 Msa0224980:three_prime_UTR 15.0%
!! CAGATTAGAAATTAATAAAA+TGG - chr2_1:75036593-75036612 Msa0224980:intron 15.0%
!!! ATATTTTGTCAGTTAAATAT+GGG + chr2_1:75037509-75037528 None:intergenic 15.0%
!!! AATATTTTGTCAGTTAAATA+TGG + chr2_1:75037510-75037529 None:intergenic 15.0%
!!! GATTATTTTTATCAATTGAT+AGG - chr2_1:75037536-75037555 Msa0224980:five_prime_UTR 15.0%
!! TATATATTTCATATCCATGT+TGG + chr2_1:75035366-75035385 None:intergenic 20.0%
!! TCAGACATTATTATTCTTTA+TGG - chr2_1:75035400-75035419 Msa0224980:three_prime_UTR 20.0%
!!! TTTTATAGAAACCAAAGAAT+TGG - chr2_1:75036487-75036506 Msa0224980:intron 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG - chr2_1:75036558-75036577 Msa0224980:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG - chr2_1:75036638-75036657 Msa0224980:CDS 20.0%
!! ACTATTACACTAAAAATGTA+GGG + chr2_1:75037139-75037158 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG + chr2_1:75037140-75037159 None:intergenic 20.0%
!!! TATTGTTATTGTAAGATAAG+TGG - chr2_1:75037583-75037602 Msa0224980:five_prime_UTR 20.0%
!!! ATTGTTATTGTAAGATAAGT+GGG - chr2_1:75037584-75037603 Msa0224980:five_prime_UTR 20.0%
!! TATATATTTCATATCCATGT+TGG + chr2_1:75035366-75035385 None:intergenic 20.0%
!! TCAGACATTATTATTCTTTA+TGG - chr2_1:75035400-75035419 Msa0224980:three_prime_UTR 20.0%
!!! TTTTATAGAAACCAAAGAAT+TGG - chr2_1:75036487-75036506 Msa0224980:intron 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG - chr2_1:75036558-75036577 Msa0224980:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG - chr2_1:75036638-75036657 Msa0224980:CDS 20.0%
!! ACTATTACACTAAAAATGTA+GGG + chr2_1:75037139-75037158 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG + chr2_1:75037140-75037159 None:intergenic 20.0%
!!! TATTGTTATTGTAAGATAAG+TGG - chr2_1:75037583-75037602 Msa0224980:five_prime_UTR 20.0%
!!! ATTGTTATTGTAAGATAAGT+GGG - chr2_1:75037584-75037603 Msa0224980:five_prime_UTR 20.0%
! GATTCTAATATTGAACTCTA+TGG - chr2_1:75036001-75036020 Msa0224980:three_prime_UTR 25.0%
! GTTAGTGAGATAATTACATA+AGG + chr2_1:75036028-75036047 None:intergenic 25.0%
!!! GGGTGATAATTATTTTATTG+TGG - chr2_1:75036077-75036096 Msa0224980:three_prime_UTR 25.0%
! AATTTAACAAAATTCTACCC+TGG + chr2_1:75036109-75036128 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG - chr2_1:75036110-75036129 Msa0224980:three_prime_UTR 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG - chr2_1:75036113-75036132 Msa0224980:three_prime_UTR 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG - chr2_1:75036114-75036133 Msa0224980:three_prime_UTR 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG - chr2_1:75036115-75036134 Msa0224980:three_prime_UTR 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG - chr2_1:75036313-75036332 Msa0224980:intron 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG - chr2_1:75036314-75036333 Msa0224980:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG - chr2_1:75036557-75036576 Msa0224980:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG - chr2_1:75036718-75036737 Msa0224980:intron 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG + chr2_1:75036940-75036959 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG + chr2_1:75037138-75037157 None:intergenic 25.0%
!! AAGATCTAGTAACAATTTTC+TGG + chr2_1:75037206-75037225 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG - chr2_1:75037274-75037293 Msa0224980:CDS 25.0%
!! GATTCTAAGAGCATAATTAT+CGG - chr2_1:75037375-75037394 Msa0224980:CDS 25.0%
! AGTAGTAAAACTTAACAAAG+TGG - chr2_1:75037470-75037489 Msa0224980:five_prime_UTR 25.0%
! GATTCTAATATTGAACTCTA+TGG - chr2_1:75036001-75036020 Msa0224980:three_prime_UTR 25.0%
! GTTAGTGAGATAATTACATA+AGG + chr2_1:75036028-75036047 None:intergenic 25.0%
!!! GGGTGATAATTATTTTATTG+TGG - chr2_1:75036077-75036096 Msa0224980:three_prime_UTR 25.0%
! AATTTAACAAAATTCTACCC+TGG + chr2_1:75036109-75036128 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG - chr2_1:75036110-75036129 Msa0224980:three_prime_UTR 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG - chr2_1:75036113-75036132 Msa0224980:three_prime_UTR 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG - chr2_1:75036114-75036133 Msa0224980:three_prime_UTR 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG - chr2_1:75036115-75036134 Msa0224980:three_prime_UTR 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG - chr2_1:75036313-75036332 Msa0224980:intron 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG - chr2_1:75036314-75036333 Msa0224980:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG - chr2_1:75036557-75036576 Msa0224980:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG - chr2_1:75036718-75036737 Msa0224980:intron 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG + chr2_1:75036940-75036959 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG + chr2_1:75037138-75037157 None:intergenic 25.0%
!! AAGATCTAGTAACAATTTTC+TGG + chr2_1:75037206-75037225 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG - chr2_1:75037274-75037293 Msa0224980:CDS 25.0%
!! GATTCTAAGAGCATAATTAT+CGG - chr2_1:75037375-75037394 Msa0224980:CDS 25.0%
! AGTAGTAAAACTTAACAAAG+TGG - chr2_1:75037470-75037489 Msa0224980:five_prime_UTR 25.0%
TTATGTCTTTATCTCCAACA+TGG - chr2_1:75035349-75035368 Msa0224980:three_prime_UTR 30.0%
AACTAGTGTTATGTTGTTGA+AGG + chr2_1:75035532-75035551 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG + chr2_1:75035631-75035650 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG + chr2_1:75035747-75035766 None:intergenic 30.0%
!! ATTTTATTGTGGCTTTTTCC+AGG - chr2_1:75036088-75036107 Msa0224980:three_prime_UTR 30.0%
!! TTTTATTGTGGCTTTTTCCA+GGG - chr2_1:75036089-75036108 Msa0224980:three_prime_UTR 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG - chr2_1:75036116-75036135 Msa0224980:three_prime_UTR 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG - chr2_1:75036261-75036280 Msa0224980:CDS 30.0%
! ATTTTCATTCCATGTGATGT+AGG - chr2_1:75036664-75036683 Msa0224980:CDS 30.0%
! AATACACCATTTTCTTGTAG+TGG + chr2_1:75037100-75037119 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG + chr2_1:75037128-75037147 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG + chr2_1:75037268-75037287 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG + chr2_1:75037272-75037291 None:intergenic 30.0%
! TTTCTGACACGTTTTCATTT+GGG + chr2_1:75037425-75037444 None:intergenic 30.0%
! TTTTGTCAGTTAAATATGGG+TGG + chr2_1:75037506-75037525 None:intergenic 30.0%
TTATGTCTTTATCTCCAACA+TGG - chr2_1:75035349-75035368 Msa0224980:three_prime_UTR 30.0%
AACTAGTGTTATGTTGTTGA+AGG + chr2_1:75035532-75035551 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG + chr2_1:75035631-75035650 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG + chr2_1:75035747-75035766 None:intergenic 30.0%
!! ATTTTATTGTGGCTTTTTCC+AGG - chr2_1:75036088-75036107 Msa0224980:three_prime_UTR 30.0%
!! TTTTATTGTGGCTTTTTCCA+GGG - chr2_1:75036089-75036108 Msa0224980:three_prime_UTR 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG - chr2_1:75036116-75036135 Msa0224980:three_prime_UTR 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG - chr2_1:75036261-75036280 Msa0224980:CDS 30.0%
! ATTTTCATTCCATGTGATGT+AGG - chr2_1:75036664-75036683 Msa0224980:CDS 30.0%
! AATACACCATTTTCTTGTAG+TGG + chr2_1:75037100-75037119 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG + chr2_1:75037128-75037147 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG + chr2_1:75037268-75037287 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG + chr2_1:75037272-75037291 None:intergenic 30.0%
! TTTCTGACACGTTTTCATTT+GGG + chr2_1:75037425-75037444 None:intergenic 30.0%
! TTTTGTCAGTTAAATATGGG+TGG + chr2_1:75037506-75037525 None:intergenic 30.0%
! TGTTGTTGAAGGATTTTGCA+TGG + chr2_1:75035521-75035540 None:intergenic 35.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG + chr2_1:75035651-75035670 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG - chr2_1:75035669-75035688 Msa0224980:three_prime_UTR 35.0%
! TCTCTGAATCCTTCTTTTCA+GGG + chr2_1:75035701-75035720 None:intergenic 35.0%
GACAAATGCAAAACCTATAG+AGG + chr2_1:75035748-75035767 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG - chr2_1:75035979-75035998 Msa0224980:three_prime_UTR 35.0%
ATGTGAAATGTGAACTCTTG+TGG - chr2_1:75036429-75036448 Msa0224980:CDS 35.0%
CATGCTAATCTCCAATTCTT+TGG + chr2_1:75036501-75036520 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG - chr2_1:75036512-75036531 Msa0224980:intron 35.0%
TTAGCATGTCAAACAACTGT+GGG - chr2_1:75036513-75036532 Msa0224980:intron 35.0%
TGATTCAACAATTACCAGAG+TGG - chr2_1:75036690-75036709 Msa0224980:intron 35.0%
AAATGCAACGATTGATCACA+AGG + chr2_1:75037236-75037255 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG - chr2_1:75037239-75037258 Msa0224980:CDS 35.0%
ATGATCCAAAATAGCACATG+AGG - chr2_1:75037301-75037320 Msa0224980:CDS 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG + chr2_1:75037309-75037328 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG - chr2_1:75037333-75037352 Msa0224980:CDS 35.0%
! CTTTCTGACACGTTTTCATT+TGG + chr2_1:75037426-75037445 None:intergenic 35.0%
GTCAGAAAGCAACTGATATT+TGG - chr2_1:75037437-75037456 Msa0224980:five_prime_UTR 35.0%
! TGTTGTTGAAGGATTTTGCA+TGG + chr2_1:75035521-75035540 None:intergenic 35.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG + chr2_1:75035651-75035670 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG - chr2_1:75035669-75035688 Msa0224980:three_prime_UTR 35.0%
! TCTCTGAATCCTTCTTTTCA+GGG + chr2_1:75035701-75035720 None:intergenic 35.0%
GACAAATGCAAAACCTATAG+AGG + chr2_1:75035748-75035767 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG - chr2_1:75035979-75035998 Msa0224980:three_prime_UTR 35.0%
ATGTGAAATGTGAACTCTTG+TGG - chr2_1:75036429-75036448 Msa0224980:CDS 35.0%
CATGCTAATCTCCAATTCTT+TGG + chr2_1:75036501-75036520 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG - chr2_1:75036512-75036531 Msa0224980:intron 35.0%
TTAGCATGTCAAACAACTGT+GGG - chr2_1:75036513-75036532 Msa0224980:intron 35.0%
TGATTCAACAATTACCAGAG+TGG - chr2_1:75036690-75036709 Msa0224980:intron 35.0%
AAATGCAACGATTGATCACA+AGG + chr2_1:75037236-75037255 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG - chr2_1:75037239-75037258 Msa0224980:CDS 35.0%
ATGATCCAAAATAGCACATG+AGG - chr2_1:75037301-75037320 Msa0224980:CDS 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG + chr2_1:75037309-75037328 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG - chr2_1:75037333-75037352 Msa0224980:CDS 35.0%
! CTTTCTGACACGTTTTCATT+TGG + chr2_1:75037426-75037445 None:intergenic 35.0%
GTCAGAAAGCAACTGATATT+TGG - chr2_1:75037437-75037456 Msa0224980:five_prime_UTR 35.0%
TGGAGTGTGTGTTTCATTTG+TGG + chr2_1:75035485-75035504 None:intergenic 40.0%
TGCATGGAATTTGAGCTTAG+TGG + chr2_1:75035505-75035524 None:intergenic 40.0%
!! CATTAGGGGTTAGTTTGAGT+TGG + chr2_1:75035587-75035606 None:intergenic 40.0%
AGAGACGTGTGAATGCATTA+GGG + chr2_1:75035602-75035621 None:intergenic 40.0%
! GTCTCTGAATCCTTCTTTTC+AGG + chr2_1:75035702-75035721 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG + chr2_1:75035743-75035762 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG + chr2_1:75035744-75035763 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG - chr2_1:75036139-75036158 Msa0224980:three_prime_UTR 40.0%
TTGTGCTACATGTATGGTAG+AGG - chr2_1:75036145-75036164 Msa0224980:three_prime_UTR 40.0%
CTATTAGGTTCTTGAAGGCA+AGG - chr2_1:75036266-75036285 Msa0224980:intron 40.0%
GAATCACAACCTACATCACA+TGG + chr2_1:75036676-75036695 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG - chr2_1:75036695-75036714 Msa0224980:intron 40.0%
AATCTTGTGCTTCTTGATCC+TGG - chr2_1:75037036-75037055 Msa0224980:intron 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG - chr2_1:75037060-75037079 Msa0224980:intron 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG + chr2_1:75037094-75037113 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG - chr2_1:75037091-75037110 Msa0224980:intron 40.0%
ATGGTCGAGTTTGAATCAAG+TGG + chr2_1:75037171-75037190 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG - chr2_1:75037170-75037189 Msa0224980:intron 40.0%
AGGATTCCAACCTTGTACAT+TGG - chr2_1:75037259-75037278 Msa0224980:CDS 40.0%
TGCACGTGGCATAACATAAT+TGG - chr2_1:75037327-75037346 Msa0224980:CDS 40.0%
TGGTTGAGGTAAATGACACT+TGG - chr2_1:75037347-75037366 Msa0224980:CDS 40.0%
TGGAGTGTGTGTTTCATTTG+TGG + chr2_1:75035485-75035504 None:intergenic 40.0%
TGCATGGAATTTGAGCTTAG+TGG + chr2_1:75035505-75035524 None:intergenic 40.0%
!! CATTAGGGGTTAGTTTGAGT+TGG + chr2_1:75035587-75035606 None:intergenic 40.0%
AGAGACGTGTGAATGCATTA+GGG + chr2_1:75035602-75035621 None:intergenic 40.0%
! GTCTCTGAATCCTTCTTTTC+AGG + chr2_1:75035702-75035721 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG + chr2_1:75035743-75035762 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG + chr2_1:75035744-75035763 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG - chr2_1:75036139-75036158 Msa0224980:three_prime_UTR 40.0%
TTGTGCTACATGTATGGTAG+AGG - chr2_1:75036145-75036164 Msa0224980:three_prime_UTR 40.0%
CTATTAGGTTCTTGAAGGCA+AGG - chr2_1:75036266-75036285 Msa0224980:intron 40.0%
GAATCACAACCTACATCACA+TGG + chr2_1:75036676-75036695 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG - chr2_1:75036695-75036714 Msa0224980:intron 40.0%
AATCTTGTGCTTCTTGATCC+TGG - chr2_1:75037036-75037055 Msa0224980:intron 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG - chr2_1:75037060-75037079 Msa0224980:intron 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG + chr2_1:75037094-75037113 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG - chr2_1:75037091-75037110 Msa0224980:intron 40.0%
ATGGTCGAGTTTGAATCAAG+TGG + chr2_1:75037171-75037190 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG - chr2_1:75037170-75037189 Msa0224980:intron 40.0%
AGGATTCCAACCTTGTACAT+TGG - chr2_1:75037259-75037278 Msa0224980:CDS 40.0%
TGCACGTGGCATAACATAAT+TGG - chr2_1:75037327-75037346 Msa0224980:CDS 40.0%
TGGTTGAGGTAAATGACACT+TGG - chr2_1:75037347-75037366 Msa0224980:CDS 40.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG + chr2_1:75035584-75035603 None:intergenic 45.0%
GAGACGTGTGAATGCATTAG+GGG + chr2_1:75035601-75035620 None:intergenic 45.0%
GAGAGACGTGTGAATGCATT+AGG + chr2_1:75035603-75035622 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG + chr2_1:75035676-75035695 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG + chr2_1:75035724-75035743 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG - chr2_1:75035732-75035751 Msa0224980:three_prime_UTR 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG - chr2_1:75035917-75035936 Msa0224980:three_prime_UTR 45.0%
GCTGTACGATAATGCACATC+TGG + chr2_1:75035947-75035966 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG - chr2_1:75035950-75035969 Msa0224980:three_prime_UTR 45.0%
CATTATCGTACAGCTTGTGG+TGG - chr2_1:75035953-75035972 Msa0224980:three_prime_UTR 45.0%
TTGTTAAATTGTGGAGGGGG+TGG - chr2_1:75036119-75036138 Msa0224980:three_prime_UTR 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG + chr2_1:75036303-75036322 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG - chr2_1:75036532-75036551 Msa0224980:intron 45.0%
CATTCATGTCCTTTCCACTC+TGG + chr2_1:75036707-75036726 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG - chr2_1:75036705-75036724 Msa0224980:intron 45.0%
TCTTGATCCTGGTGATAGCT+AGG - chr2_1:75037047-75037066 Msa0224980:intron 45.0%
! TTTCTGGTAGCTCAGTTCCA+TGG + chr2_1:75037190-75037209 None:intergenic 45.0%
! ATTATCGGTGCAAAAGCACG+TGG - chr2_1:75037390-75037409 Msa0224980:exon 45.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG + chr2_1:75035584-75035603 None:intergenic 45.0%
GAGACGTGTGAATGCATTAG+GGG + chr2_1:75035601-75035620 None:intergenic 45.0%
GAGAGACGTGTGAATGCATT+AGG + chr2_1:75035603-75035622 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG + chr2_1:75035676-75035695 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG + chr2_1:75035724-75035743 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG - chr2_1:75035732-75035751 Msa0224980:three_prime_UTR 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG - chr2_1:75035917-75035936 Msa0224980:three_prime_UTR 45.0%
GCTGTACGATAATGCACATC+TGG + chr2_1:75035947-75035966 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG - chr2_1:75035950-75035969 Msa0224980:three_prime_UTR 45.0%
CATTATCGTACAGCTTGTGG+TGG - chr2_1:75035953-75035972 Msa0224980:three_prime_UTR 45.0%
TTGTTAAATTGTGGAGGGGG+TGG - chr2_1:75036119-75036138 Msa0224980:three_prime_UTR 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG + chr2_1:75036303-75036322 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG - chr2_1:75036532-75036551 Msa0224980:intron 45.0%
CATTCATGTCCTTTCCACTC+TGG + chr2_1:75036707-75036726 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG - chr2_1:75036705-75036724 Msa0224980:intron 45.0%
TCTTGATCCTGGTGATAGCT+AGG - chr2_1:75037047-75037066 Msa0224980:intron 45.0%
! TTTCTGGTAGCTCAGTTCCA+TGG + chr2_1:75037190-75037209 None:intergenic 45.0%
! ATTATCGGTGCAAAAGCACG+TGG - chr2_1:75037390-75037409 Msa0224980:exon 45.0%
TGCACATCTGGTGTTCCATC+TGG + chr2_1:75035935-75035954 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG - chr2_1:75035966-75035985 Msa0224980:three_prime_UTR 50.0%
GTGGGTGAAGCAGATTCTAC+AGG - chr2_1:75036531-75036550 Msa0224980:intron 50.0%
GGGTGAAGCAGATTCTACAG+GGG - chr2_1:75036533-75036552 Msa0224980:intron 50.0%
TGAAGCAGATTCTACAGGGG+TGG - chr2_1:75036536-75036555 Msa0224980:intron 50.0%
GACTCAGCAGACTCTTTGTG+AGG - chr2_1:75036749-75036768 Msa0224980:intron 50.0%
GATCCTGGTGATAGCTAGGA+CGG - chr2_1:75037051-75037070 Msa0224980:intron 50.0%
AAACCGTCCTAGCTATCACC+AGG + chr2_1:75037057-75037076 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG - chr2_1:75037313-75037332 Msa0224980:CDS 50.0%
TGCACATCTGGTGTTCCATC+TGG + chr2_1:75035935-75035954 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG - chr2_1:75035966-75035985 Msa0224980:three_prime_UTR 50.0%
GTGGGTGAAGCAGATTCTAC+AGG - chr2_1:75036531-75036550 Msa0224980:intron 50.0%
GGGTGAAGCAGATTCTACAG+GGG - chr2_1:75036533-75036552 Msa0224980:intron 50.0%
TGAAGCAGATTCTACAGGGG+TGG - chr2_1:75036536-75036555 Msa0224980:intron 50.0%
GACTCAGCAGACTCTTTGTG+AGG - chr2_1:75036749-75036768 Msa0224980:intron 50.0%
GATCCTGGTGATAGCTAGGA+CGG - chr2_1:75037051-75037070 Msa0224980:intron 50.0%
AAACCGTCCTAGCTATCACC+AGG + chr2_1:75037057-75037076 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG - chr2_1:75037313-75037332 Msa0224980:CDS 50.0%
CGGCACTGTCCCTGAAAAGA+AGG - chr2_1:75035689-75035708 Msa0224980:three_prime_UTR 55.0%
CGGCACTGTCCCTGAAAAGA+AGG - chr2_1:75035689-75035708 Msa0224980:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75035347 75037623 75035347 ID=Msa0224980;Name=Msa0224980
chr2_1 mRNA 75035347 75037623 75035347 ID=Msa0224980-mRNA-1;Parent=Msa0224980;Name=Msa0224980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=226|1|1|1|1|1|6|854|191
chr2_1 exon 75035347 75036284 75035347 ID=Msa0224980-mRNA-1:exon:22415;Parent=Msa0224980-mRNA-1
chr2_1 exon 75036413 75036475 75036413 ID=Msa0224980-mRNA-1:exon:22414;Parent=Msa0224980-mRNA-1
chr2_1 exon 75036635 75036697 75036635 ID=Msa0224980-mRNA-1:exon:22413;Parent=Msa0224980-mRNA-1
chr2_1 exon 75036804 75036860 75036804 ID=Msa0224980-mRNA-1:exon:22412;Parent=Msa0224980-mRNA-1
chr2_1 exon 75036940 75037050 75036940 ID=Msa0224980-mRNA-1:exon:22411;Parent=Msa0224980-mRNA-1
chr2_1 exon 75037200 75037623 75037200 ID=Msa0224980-mRNA-1:exon:22410;Parent=Msa0224980-mRNA-1
chr2_1 five_prime_UTR 75037398 75037623 75037398 ID=Msa0224980-mRNA-1:five_prime_utr;Parent=Msa0224980-mRNA-1
chr2_1 CDS 75037200 75037397 75037200 ID=Msa0224980-mRNA-1:cds;Parent=Msa0224980-mRNA-1
chr2_1 CDS 75036940 75037050 75036940 ID=Msa0224980-mRNA-1:cds;Parent=Msa0224980-mRNA-1
chr2_1 CDS 75036804 75036860 75036804 ID=Msa0224980-mRNA-1:cds;Parent=Msa0224980-mRNA-1
chr2_1 CDS 75036635 75036697 75036635 ID=Msa0224980-mRNA-1:cds;Parent=Msa0224980-mRNA-1
chr2_1 CDS 75036413 75036475 75036413 ID=Msa0224980-mRNA-1:cds;Parent=Msa0224980-mRNA-1
chr2_1 CDS 75036201 75036284 75036201 ID=Msa0224980-mRNA-1:cds;Parent=Msa0224980-mRNA-1
chr2_1 three_prime_UTR 75035347 75036200 75035347 ID=Msa0224980-mRNA-1:three_prime_utr;Parent=Msa0224980-mRNA-1
Gene Sequence

>Msa0224980

ATGTCACTCCTCCAACTCAAACTAACCCCTAATGCATTCACACGTCTCTCTTCTTCCTCACATAAAAAATTCAGACCAAACACAACACTCTTTACAAGAACCAAAATTAGAGCAGTCGGCACTGTCCCTGAAAAGAAGGATTCAGAGACCACTAGTGACTCTAATGACCCTCCCTCTATAGGTTTTGCATTTGTCAGTTCTGTGTTGCTACCAGATGGAACACCAGATGTGCATTATCGTACAGCTTGTGGTGGACAGAAGCTTAGGAACATAATGTTGGATTCTAATATTGAACTCTATGGACCTTATGGTAGAATTTTGTTAAATTGTGGAGGGGGTGGAACTTGTGCTACATGTATGGTAGAGGTTCTTGAAGGCAAGGAGCTTCTGAGTCCTCGCACTGACAAAGAGAAAGAAAAACTTAAGAGGAAACCAAAGAATTGGAGATTAGCATGTCAAACAACTGTGGGTGAAGCAGATTCTACAGGGGTGGTTGTGATTCAACAATTACCAGAGTGGAAAGGACATGAATGGAAATATGAAAAGGATGATGATGACTCAGCAGACTCTTTGTGA

Protein sequence

>Msa0224980

MSLLQLKLTPNAFTRLSSSSHKKFRPNTTLFTRTKIRAVGTVPEKKDSETTSDSNDPPSIGFAFVSSVLLPDGTPDVHYRTACGGQKLRNIMLDSNIELYGPYGRILLNCGGGGTCATCMVEVLEGKELLSPRTDKEKEKLKRKPKNWRLACQTTVGEADSTGVVVIQQLPEWKGHEWKYEKDDDDSADSL*