Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1398170 | XP_013449674.1 | 90.347 | 404 | 35 | 4 | 1 | 403 | 1 | 401 | 0.0 | 625 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1398170 | sp|A2BIJ3|BSDC1_DANRE | 24.528 | 212 | 137 | 7 | 45 | 240 | 17 | 221 | 9.26e-13 | 72.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1398170 | A0A072U1Y0 | 90.347 | 404 | 35 | 4 | 1 | 403 | 1 | 401 | 0.0 | 625 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0100800 | Msa1398170 | 0.803167 | 3.966730e-49 | -8.615850e-47 |
Msa1364060 | Msa1398170 | 0.851077 | 1.122509e-60 | -8.615850e-47 |
Msa0630950 | Msa1398170 | 0.805647 | 1.206821e-49 | -8.615850e-47 |
Msa0669190 | Msa1398170 | 0.806343 | 8.615927e-50 | -8.615850e-47 |
Msa0712310 | Msa1398170 | 0.804944 | 1.693620e-49 | -8.615850e-47 |
Msa0752620 | Msa1398170 | 0.818626 | 1.776608e-52 | -8.615850e-47 |
Msa0795030 | Msa1398170 | 0.801946 | 7.083638e-49 | -8.615850e-47 |
Msa0830990 | Msa1398170 | 0.800714 | 1.265868e-48 | -8.615850e-47 |
Msa0175200 | Msa1398170 | 0.809212 | 2.115149e-50 | -8.615850e-47 |
Msa0223920 | Msa1398170 | 0.825355 | 4.904715e-54 | -8.615850e-47 |
Msa0436200 | Msa1398170 | 0.812087 | 5.058641e-51 | -8.615850e-47 |
Msa1089270 | Msa1398170 | 0.803838 | 2.879166e-49 | -8.615850e-47 |
Msa0265160 | Msa1398170 | 0.851809 | 6.969935e-61 | -8.615850e-47 |
Msa0300350 | Msa1398170 | 0.810741 | 9.911380e-51 | -8.615850e-47 |
Msa0303160 | Msa1398170 | 0.804546 | 2.050877e-49 | -8.615850e-47 |
Msa1136790 | Msa1398170 | 0.880484 | 5.285760e-70 | -8.615850e-47 |
Msa1172130 | Msa1398170 | -0.811768 | 5.935291e-51 | -8.615850e-47 |
Msa0590650 | Msa1398170 | 0.816758 | 4.689011e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1398170 | MtrunA17_Chr7g0259331 | 90.347 | 404 | 35 | 4 | 1 | 403 | 1 | 401 | 0.0 | 625 |
Msa1398170 | MtrunA17_Chr1g0196521 | 49.787 | 470 | 158 | 15 | 1 | 403 | 1 | 459 | 2.33e-108 | 326 |
Msa1398170 | MtrunA17_Chr2g0287041 | 38.222 | 450 | 185 | 13 | 1 | 397 | 1 | 410 | 2.03e-68 | 222 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1398170 | AT1G03350.1 | 43.074 | 462 | 185 | 12 | 1 | 391 | 1 | 455 | 2.36e-97 | 299 |
Msa1398170 | AT4G13110.1 | 45.089 | 224 | 95 | 3 | 41 | 245 | 25 | 239 | 2.55e-50 | 172 |
Find 97 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGAAGAGGTGGATGATTT+TGG | 0.211405 | tig0022246:+20691 | Msa1398170:CDS |
GTGAAAAGAACAATAGTTTA+TGG | 0.221360 | tig0022246:+20731 | Msa1398170:CDS |
TTCGGAAACACCGTGATTAA+AGG | 0.270210 | tig0022246:+20184 | Msa1398170:CDS |
ATATTATTATAAGGTTTATA+AGG | 0.296101 | tig0022246:+20537 | Msa1398170:CDS |
TGGTTCCTAATGTTGTTGAT+AGG | 0.315634 | tig0022246:+20497 | Msa1398170:CDS |
GGAGGAAGCGGTGTTGGTTT+CGG | 0.333017 | tig0022246:-19963 | None:intergenic |
ATCAAAAGTTGATGAGCATT+TGG | 0.347807 | tig0022246:+20774 | Msa1398170:CDS |
TAATCACGGTGTTTCCGAAT+TGG | 0.350294 | tig0022246:-20180 | None:intergenic |
GTGGGATTGAACGGCACGTT+TGG | 0.387195 | tig0022246:-19995 | None:intergenic |
TTGGTTGAGATATTATTATA+AGG | 0.389321 | tig0022246:+20528 | Msa1398170:CDS |
GTTTCCCTATCAACAACATT+AGG | 0.391217 | tig0022246:-20502 | None:intergenic |
GTATATTTCGATGACGGATT+CGG | 0.397326 | tig0022246:-20068 | None:intergenic |
GAAAAGAAGGCAATGAGATT+GGG | 0.398844 | tig0022246:+20988 | Msa1398170:CDS |
TCGAATCAGATTCTGATTCA+AGG | 0.403786 | tig0022246:-20243 | None:intergenic |
GTTTCGGATCCTGATGGGTC+CGG | 0.405959 | tig0022246:-19947 | None:intergenic |
AAGAAGAAGAAGATTTGAGT+TGG | 0.406673 | tig0022246:+21064 | Msa1398170:CDS |
GGAAAAGAAGGCAATGAGAT+TGG | 0.407669 | tig0022246:+20987 | Msa1398170:CDS |
AGAAGAAGAAGATTTGAGTT+GGG | 0.413686 | tig0022246:+21065 | Msa1398170:CDS |
GTTAAGAGAGAATGATGAAA+TGG | 0.416221 | tig0022246:+20456 | Msa1398170:CDS |
AAATGGAGAGTGTATTTAGA+AGG | 0.417338 | tig0022246:+20473 | Msa1398170:CDS |
GCGGTATAATAAGTGGAAGT+TGG | 0.440753 | tig0022246:+20393 | Msa1398170:CDS |
GCAAAATTGATTTGCGGAAG+CGG | 0.446892 | tig0022246:+21025 | Msa1398170:CDS |
GGAGAGTGTATTTAGAAGGT+TGG | 0.446991 | tig0022246:+20477 | Msa1398170:CDS |
AGAGGATGAGGACTTGAGTT+GGG | 0.453903 | tig0022246:+20612 | Msa1398170:CDS |
GAAACGAATGTCGAGGGAAG+AGG | 0.455231 | tig0022246:+20594 | Msa1398170:CDS |
GTCGCTGGAGGAAGCGGTGT+TGG | 0.456019 | tig0022246:-19969 | None:intergenic |
CGTCGCGATCTTCATGAATT+CGG | 0.457351 | tig0022246:+20091 | Msa1398170:CDS |
CGGCACGTTTGGCGAGTCGC+TGG | 0.457531 | tig0022246:-19984 | None:intergenic |
AAGAGGATGAGGACTTGAGT+TGG | 0.459371 | tig0022246:+20611 | Msa1398170:CDS |
GAGATTGAGTAATGTGGAAG+AGG | 0.460129 | tig0022246:+20678 | Msa1398170:CDS |
GCTCAAATTCGTGCAATTCA+AGG | 0.465155 | tig0022246:+20331 | Msa1398170:CDS |
TTATACCGCTCCAAATCAAA+AGG | 0.467584 | tig0022246:-20379 | None:intergenic |
GGTTCCTAATGTTGTTGATA+GGG | 0.469145 | tig0022246:+20498 | Msa1398170:CDS |
AATAAATCTCAAGCCTTGGC+AGG | 0.469300 | tig0022246:-21111 | None:intergenic |
TGGCGAGTCGCTGGAGGAAG+CGG | 0.470447 | tig0022246:-19975 | None:intergenic |
CACGTGCCGGTGGGATTGAA+CGG | 0.481249 | tig0022246:-20004 | None:intergenic |
TTTCGGATCCTGATGGGTCC+GGG | 0.481976 | tig0022246:-19946 | None:intergenic |
ATTTGGAGCGGTATAATAAG+TGG | 0.482337 | tig0022246:+20386 | Msa1398170:CDS |
TGACAATGGAGAAGAATGTC+GGG | 0.483635 | tig0022246:+20872 | Msa1398170:CDS |
GCCGATGTTCTTCCACGTGC+CGG | 0.493880 | tig0022246:-20017 | None:intergenic |
GTGTTGGTTTCGGATCCTGA+TGG | 0.498195 | tig0022246:-19953 | None:intergenic |
TGTTGGTTTCGGATCCTGAT+GGG | 0.501567 | tig0022246:-19952 | None:intergenic |
GTCCGGGTCGTCGGAGAAAA+CGG | 0.503245 | tig0022246:-19930 | None:intergenic |
GGACACGTCATTGACCAATT+CGG | 0.509999 | tig0022246:+20166 | Msa1398170:CDS |
TTTATCCACTTGGCTTCCAT+CGG | 0.511757 | tig0022246:-20815 | None:intergenic |
AATGTCGAGGGAAGAGGATG+AGG | 0.511956 | tig0022246:+20600 | Msa1398170:CDS |
GCTTGAGTGGGATGAGATTG+AGG | 0.513354 | tig0022246:+20948 | Msa1398170:CDS |
AAAAGAAGGCAATGAGATTG+GGG | 0.517259 | tig0022246:+20989 | Msa1398170:CDS |
AATCCTTCGCTTTATCCACT+TGG | 0.517564 | tig0022246:-20825 | None:intergenic |
TAGTAGCAATGAGGAAAAGA+AGG | 0.522851 | tig0022246:+20975 | Msa1398170:CDS |
GCCCAAGCAAAATTGATTTG+CGG | 0.523784 | tig0022246:+21019 | Msa1398170:CDS |
TTTATGGCAAAACAAGATGA+TGG | 0.527238 | tig0022246:+20747 | Msa1398170:CDS |
GTATAATAAATCTCAAGCCT+TGG | 0.537750 | tig0022246:-21115 | None:intergenic |
TCCGACGACCCGGACCCATC+AGG | 0.538011 | tig0022246:+19938 | Msa1398170:CDS |
GATCTTCATGAATTCGGCAC+AGG | 0.539054 | tig0022246:+20097 | Msa1398170:CDS |
TTTGGATGTTGTTCAAGAGA+AGG | 0.539257 | tig0022246:+20792 | Msa1398170:CDS |
ATTGAGTAATGTGGAAGAGG+TGG | 0.540140 | tig0022246:+20681 | Msa1398170:CDS |
ATTCGGCACAGGTTTGAAGA+AGG | 0.541645 | tig0022246:+20108 | Msa1398170:CDS |
GGTAAGTCAGAACTCTGAGC+AGG | 0.548440 | tig0022246:+20912 | Msa1398170:CDS |
ATGGAGAAGAATGTCGGGGA+TGG | 0.549119 | tig0022246:+20877 | Msa1398170:CDS |
GGCAACCTAATCAAAACCTT+CGG | 0.549557 | tig0022246:+20037 | Msa1398170:CDS |
GATGTTCTTCCACGTGCCGG+TGG | 0.551346 | tig0022246:-20014 | None:intergenic |
TTGGTCAATGACGTGTCCAA+CGG | 0.553179 | tig0022246:-20161 | None:intergenic |
CTGAGCCGTTCCTTTAATCA+CGG | 0.557516 | tig0022246:-20194 | None:intergenic |
CACGACTCTCTCGAAACCGT+TGG | 0.558594 | tig0022246:+20145 | Msa1398170:CDS |
ATGTTCTTCCACGTGCCGGT+GGG | 0.564459 | tig0022246:-20013 | None:intergenic |
GTGACAATGGAGAAGAATGT+CGG | 0.570801 | tig0022246:+20871 | Msa1398170:CDS |
AAGTCAGAACTCTGAGCAGG+AGG | 0.571371 | tig0022246:+20915 | Msa1398170:CDS |
AAGAGGATTAAGAAACAGAG+TGG | 0.572235 | tig0022246:+20277 | Msa1398170:CDS |
CACGTTTGGCGAGTCGCTGG+AGG | 0.588279 | tig0022246:-19981 | None:intergenic |
AGTCAGAACTCTGAGCAGGA+GGG | 0.591570 | tig0022246:+20916 | Msa1398170:CDS |
AAGGCAATGAGATTGGGGAG+TGG | 0.594208 | tig0022246:+20994 | Msa1398170:CDS |
GTCAGAACTCTGAGCAGGAG+GGG | 0.595465 | tig0022246:+20917 | Msa1398170:CDS |
TTAAGAAAGCTGAGGATGTG+AGG | 0.599039 | tig0022246:+20560 | Msa1398170:CDS |
GATGAGGAGTATGAAGATGA+TGG | 0.606982 | tig0022246:+20643 | Msa1398170:CDS |
AACGTGCCGTTCAATCCCAC+CGG | 0.612627 | tig0022246:+19998 | Msa1398170:CDS |
TTCTGATAAGAAAGTGACAA+TGG | 0.614400 | tig0022246:+20858 | Msa1398170:CDS |
CGTTCAATCCCACCGGCACG+TGG | 0.618792 | tig0022246:+20005 | Msa1398170:CDS |
TAAGAAAGCTGAGGATGTGA+GGG | 0.620596 | tig0022246:+20561 | Msa1398170:CDS |
GTTGTTCAAGAGAAGGCCGA+TGG | 0.623363 | tig0022246:+20799 | Msa1398170:CDS |
AGCTCGTGAAACGAATGTCG+AGG | 0.623979 | tig0022246:+20587 | Msa1398170:CDS |
AAACACCGTGATTAAAGGAA+CGG | 0.625585 | tig0022246:+20189 | Msa1398170:CDS |
GCGACGGTATATTTCGATGA+CGG | 0.630669 | tig0022246:-20074 | None:intergenic |
TTATAAGGTTAAGAAAGCTG+AGG | 0.632810 | tig0022246:+20552 | Msa1398170:CDS |
AAGCCAAGTGGATAAAGCGA+AGG | 0.635396 | tig0022246:+20822 | Msa1398170:CDS |
GAGTTGGGATGTTGAAGATG+AGG | 0.640727 | tig0022246:+20627 | Msa1398170:CDS |
TGATAAGAGATTGAGTAATG+TGG | 0.641001 | tig0022246:+20672 | Msa1398170:CDS |
GGATAAAGCGAAGGATTCTG+TGG | 0.643867 | tig0022246:+20831 | Msa1398170:CDS |
GCTCGTGAAACGAATGTCGA+GGG | 0.648458 | tig0022246:+20588 | Msa1398170:CDS |
TGATGATGATGAGCCTGCCA+AGG | 0.653151 | tig0022246:+21098 | Msa1398170:CDS |
CGGGGATGGAAAGTCTTCAG+AGG | 0.655419 | tig0022246:+20891 | Msa1398170:CDS |
ACCGGCACGTGGAAGAACAT+CGG | 0.661066 | tig0022246:+20016 | Msa1398170:CDS |
GAAGGCCGATGGAAGCCAAG+TGG | 0.667743 | tig0022246:+20810 | Msa1398170:CDS |
ATGGCAAAACAAGATGATGG+AGG | 0.669587 | tig0022246:+20750 | Msa1398170:CDS |
TGAGGATCTTAGTAGCAATG+AGG | 0.687708 | tig0022246:+20966 | Msa1398170:CDS |
CGAATTCATGAAGATCGCGA+CGG | 0.695393 | tig0022246:-20090 | None:intergenic |
GACAATGGAGAAGAATGTCG+GGG | 0.696218 | tig0022246:+20873 | Msa1398170:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTATTATAAGGTTTATA+AGG | + | tig0022246:20537-20556 | Msa1398170:CDS | 10.0% |
!! | ATATTATTATAAGGTTTATA+AGG | + | tig0022246:20537-20556 | Msa1398170:CDS | 10.0% |
!! | TTGGTTGAGATATTATTATA+AGG | + | tig0022246:20528-20547 | Msa1398170:CDS | 20.0% |
!! | TTGGTTGAGATATTATTATA+AGG | + | tig0022246:20528-20547 | Msa1398170:CDS | 20.0% |
! | GTGAAAAGAACAATAGTTTA+TGG | + | tig0022246:20731-20750 | Msa1398170:CDS | 25.0% |
! | GTGAAAAGAACAATAGTTTA+TGG | + | tig0022246:20731-20750 | Msa1398170:CDS | 25.0% |
!! | TACAGAAGAACCTTTTGATT+TGG | + | tig0022246:20369-20388 | Msa1398170:CDS | 30.0% |
GTTAAGAGAGAATGATGAAA+TGG | + | tig0022246:20456-20475 | Msa1398170:CDS | 30.0% | |
! | AAATGGAGAGTGTATTTAGA+AGG | + | tig0022246:20473-20492 | Msa1398170:CDS | 30.0% |
!! | TTGTTGATAGGGAAACTTTT+TGG | + | tig0022246:20509-20528 | Msa1398170:CDS | 30.0% |
TTATAAGGTTAAGAAAGCTG+AGG | + | tig0022246:20552-20571 | Msa1398170:CDS | 30.0% | |
TGATAAGAGATTGAGTAATG+TGG | + | tig0022246:20672-20691 | Msa1398170:CDS | 30.0% | |
TTTATGGCAAAACAAGATGA+TGG | + | tig0022246:20747-20766 | Msa1398170:CDS | 30.0% | |
!! | ATCAAAAGTTGATGAGCATT+TGG | + | tig0022246:20774-20793 | Msa1398170:CDS | 30.0% |
TTCTGATAAGAAAGTGACAA+TGG | + | tig0022246:20858-20877 | Msa1398170:CDS | 30.0% | |
AAGAAGAAGAAGATTTGAGT+TGG | + | tig0022246:21064-21083 | Msa1398170:CDS | 30.0% | |
! | AGAAGAAGAAGATTTGAGTT+GGG | + | tig0022246:21065-21084 | Msa1398170:CDS | 30.0% |
!! | TACAGAAGAACCTTTTGATT+TGG | + | tig0022246:20369-20388 | Msa1398170:CDS | 30.0% |
GTTAAGAGAGAATGATGAAA+TGG | + | tig0022246:20456-20475 | Msa1398170:CDS | 30.0% | |
! | AAATGGAGAGTGTATTTAGA+AGG | + | tig0022246:20473-20492 | Msa1398170:CDS | 30.0% |
!! | TTGTTGATAGGGAAACTTTT+TGG | + | tig0022246:20509-20528 | Msa1398170:CDS | 30.0% |
TTATAAGGTTAAGAAAGCTG+AGG | + | tig0022246:20552-20571 | Msa1398170:CDS | 30.0% | |
TGATAAGAGATTGAGTAATG+TGG | + | tig0022246:20672-20691 | Msa1398170:CDS | 30.0% | |
TTTATGGCAAAACAAGATGA+TGG | + | tig0022246:20747-20766 | Msa1398170:CDS | 30.0% | |
!! | ATCAAAAGTTGATGAGCATT+TGG | + | tig0022246:20774-20793 | Msa1398170:CDS | 30.0% |
TTCTGATAAGAAAGTGACAA+TGG | + | tig0022246:20858-20877 | Msa1398170:CDS | 30.0% | |
AAGAAGAAGAAGATTTGAGT+TGG | + | tig0022246:21064-21083 | Msa1398170:CDS | 30.0% | |
! | AGAAGAAGAAGATTTGAGTT+GGG | + | tig0022246:21065-21084 | Msa1398170:CDS | 30.0% |
!! | GTATATTTCGATGACGGATT+CGG | - | tig0022246:20071-20090 | None:intergenic | 35.0% |
AAACACCGTGATTAAAGGAA+CGG | + | tig0022246:20189-20208 | Msa1398170:CDS | 35.0% | |
TCGAATCAGATTCTGATTCA+AGG | - | tig0022246:20246-20265 | None:intergenic | 35.0% | |
ATTCGAAGAAGAAGAAGAAG+AGG | + | tig0022246:20260-20279 | Msa1398170:CDS | 35.0% | |
AAGAGGATTAAGAAACAGAG+TGG | + | tig0022246:20277-20296 | Msa1398170:CDS | 35.0% | |
!!! | AAGAACCTTTTGATTTGGAG+CGG | + | tig0022246:20374-20393 | Msa1398170:CDS | 35.0% |
TTATACCGCTCCAAATCAAA+AGG | - | tig0022246:20382-20401 | None:intergenic | 35.0% | |
! | ATTTGGAGCGGTATAATAAG+TGG | + | tig0022246:20386-20405 | Msa1398170:CDS | 35.0% |
TGGTTCCTAATGTTGTTGAT+AGG | + | tig0022246:20497-20516 | Msa1398170:CDS | 35.0% | |
GGTTCCTAATGTTGTTGATA+GGG | + | tig0022246:20498-20517 | Msa1398170:CDS | 35.0% | |
GTTTCCCTATCAACAACATT+AGG | - | tig0022246:20505-20524 | None:intergenic | 35.0% | |
TTTGGATGTTGTTCAAGAGA+AGG | + | tig0022246:20792-20811 | Msa1398170:CDS | 35.0% | |
TAGTAGCAATGAGGAAAAGA+AGG | + | tig0022246:20975-20994 | Msa1398170:CDS | 35.0% | |
GAAAAGAAGGCAATGAGATT+GGG | + | tig0022246:20988-21007 | Msa1398170:CDS | 35.0% | |
AAAAGAAGGCAATGAGATTG+GGG | + | tig0022246:20989-21008 | Msa1398170:CDS | 35.0% | |
! | TCCGCAAATCAATTTTGCTT+GGG | - | tig0022246:21023-21042 | None:intergenic | 35.0% |
! | TTCCGCAAATCAATTTTGCT+TGG | - | tig0022246:21024-21043 | None:intergenic | 35.0% |
!! | GTATATTTCGATGACGGATT+CGG | - | tig0022246:20071-20090 | None:intergenic | 35.0% |
AAACACCGTGATTAAAGGAA+CGG | + | tig0022246:20189-20208 | Msa1398170:CDS | 35.0% | |
TCGAATCAGATTCTGATTCA+AGG | - | tig0022246:20246-20265 | None:intergenic | 35.0% | |
ATTCGAAGAAGAAGAAGAAG+AGG | + | tig0022246:20260-20279 | Msa1398170:CDS | 35.0% | |
AAGAGGATTAAGAAACAGAG+TGG | + | tig0022246:20277-20296 | Msa1398170:CDS | 35.0% | |
!!! | AAGAACCTTTTGATTTGGAG+CGG | + | tig0022246:20374-20393 | Msa1398170:CDS | 35.0% |
TTATACCGCTCCAAATCAAA+AGG | - | tig0022246:20382-20401 | None:intergenic | 35.0% | |
! | ATTTGGAGCGGTATAATAAG+TGG | + | tig0022246:20386-20405 | Msa1398170:CDS | 35.0% |
TGGTTCCTAATGTTGTTGAT+AGG | + | tig0022246:20497-20516 | Msa1398170:CDS | 35.0% | |
GGTTCCTAATGTTGTTGATA+GGG | + | tig0022246:20498-20517 | Msa1398170:CDS | 35.0% | |
GTTTCCCTATCAACAACATT+AGG | - | tig0022246:20505-20524 | None:intergenic | 35.0% | |
TTTGGATGTTGTTCAAGAGA+AGG | + | tig0022246:20792-20811 | Msa1398170:CDS | 35.0% | |
TAGTAGCAATGAGGAAAAGA+AGG | + | tig0022246:20975-20994 | Msa1398170:CDS | 35.0% | |
GAAAAGAAGGCAATGAGATT+GGG | + | tig0022246:20988-21007 | Msa1398170:CDS | 35.0% | |
AAAAGAAGGCAATGAGATTG+GGG | + | tig0022246:20989-21008 | Msa1398170:CDS | 35.0% | |
! | TCCGCAAATCAATTTTGCTT+GGG | - | tig0022246:21023-21042 | None:intergenic | 35.0% |
! | TTCCGCAAATCAATTTTGCT+TGG | - | tig0022246:21024-21043 | None:intergenic | 35.0% |
GGCAACCTAATCAAAACCTT+CGG | + | tig0022246:20037-20056 | Msa1398170:CDS | 40.0% | |
!!! | TTTCGCCGAAGGTTTTGATT+AGG | - | tig0022246:20045-20064 | None:intergenic | 40.0% |
TAATCACGGTGTTTCCGAAT+TGG | - | tig0022246:20183-20202 | None:intergenic | 40.0% | |
TTCGGAAACACCGTGATTAA+AGG | + | tig0022246:20184-20203 | Msa1398170:CDS | 40.0% | |
GCTCAAATTCGTGCAATTCA+AGG | + | tig0022246:20331-20350 | Msa1398170:CDS | 40.0% | |
GCGGTATAATAAGTGGAAGT+TGG | + | tig0022246:20393-20412 | Msa1398170:CDS | 40.0% | |
! | AAGTTGGAGTTTTCGTTGGA+AGG | + | tig0022246:20409-20428 | Msa1398170:CDS | 40.0% |
! | AGTTGGAGTTTTCGTTGGAA+GGG | + | tig0022246:20410-20429 | Msa1398170:CDS | 40.0% |
! | GTTTTCGTTGGAAGGGAAAA+AGG | + | tig0022246:20417-20436 | Msa1398170:CDS | 40.0% |
GGAAGGGAAAAAGGATGAAA+TGG | + | tig0022246:20426-20445 | Msa1398170:CDS | 40.0% | |
! | GGAGAGTGTATTTAGAAGGT+TGG | + | tig0022246:20477-20496 | Msa1398170:CDS | 40.0% |
TTAAGAAAGCTGAGGATGTG+AGG | + | tig0022246:20560-20579 | Msa1398170:CDS | 40.0% | |
TAAGAAAGCTGAGGATGTGA+GGG | + | tig0022246:20561-20580 | Msa1398170:CDS | 40.0% | |
! | GATGAGGAGTATGAAGATGA+TGG | + | tig0022246:20643-20662 | Msa1398170:CDS | 40.0% |
GAGATTGAGTAATGTGGAAG+AGG | + | tig0022246:20678-20697 | Msa1398170:CDS | 40.0% | |
ATTGAGTAATGTGGAAGAGG+TGG | + | tig0022246:20681-20700 | Msa1398170:CDS | 40.0% | |
! | AAGAGGTGGATGATTTTGGA+GGG | + | tig0022246:20695-20714 | Msa1398170:CDS | 40.0% |
! | ATGGCAAAACAAGATGATGG+AGG | + | tig0022246:20750-20769 | Msa1398170:CDS | 40.0% |
TTTATCCACTTGGCTTCCAT+CGG | - | tig0022246:20818-20837 | None:intergenic | 40.0% | |
AATCCTTCGCTTTATCCACT+TGG | - | tig0022246:20828-20847 | None:intergenic | 40.0% | |
GTGACAATGGAGAAGAATGT+CGG | + | tig0022246:20871-20890 | Msa1398170:CDS | 40.0% | |
TGACAATGGAGAAGAATGTC+GGG | + | tig0022246:20872-20891 | Msa1398170:CDS | 40.0% | |
TGAGGATCTTAGTAGCAATG+AGG | + | tig0022246:20966-20985 | Msa1398170:CDS | 40.0% | |
GGAAAAGAAGGCAATGAGAT+TGG | + | tig0022246:20987-21006 | Msa1398170:CDS | 40.0% | |
!! | GCCCAAGCAAAATTGATTTG+CGG | + | tig0022246:21019-21038 | Msa1398170:CDS | 40.0% |
!! | GCAAAATTGATTTGCGGAAG+CGG | + | tig0022246:21025-21044 | Msa1398170:CDS | 40.0% |
GGCAACCTAATCAAAACCTT+CGG | + | tig0022246:20037-20056 | Msa1398170:CDS | 40.0% | |
!!! | TTTCGCCGAAGGTTTTGATT+AGG | - | tig0022246:20045-20064 | None:intergenic | 40.0% |
TAATCACGGTGTTTCCGAAT+TGG | - | tig0022246:20183-20202 | None:intergenic | 40.0% | |
TTCGGAAACACCGTGATTAA+AGG | + | tig0022246:20184-20203 | Msa1398170:CDS | 40.0% | |
GCTCAAATTCGTGCAATTCA+AGG | + | tig0022246:20331-20350 | Msa1398170:CDS | 40.0% | |
GCGGTATAATAAGTGGAAGT+TGG | + | tig0022246:20393-20412 | Msa1398170:CDS | 40.0% | |
! | AAGTTGGAGTTTTCGTTGGA+AGG | + | tig0022246:20409-20428 | Msa1398170:CDS | 40.0% |
! | AGTTGGAGTTTTCGTTGGAA+GGG | + | tig0022246:20410-20429 | Msa1398170:CDS | 40.0% |
! | GTTTTCGTTGGAAGGGAAAA+AGG | + | tig0022246:20417-20436 | Msa1398170:CDS | 40.0% |
GGAAGGGAAAAAGGATGAAA+TGG | + | tig0022246:20426-20445 | Msa1398170:CDS | 40.0% | |
! | GGAGAGTGTATTTAGAAGGT+TGG | + | tig0022246:20477-20496 | Msa1398170:CDS | 40.0% |
TTAAGAAAGCTGAGGATGTG+AGG | + | tig0022246:20560-20579 | Msa1398170:CDS | 40.0% | |
TAAGAAAGCTGAGGATGTGA+GGG | + | tig0022246:20561-20580 | Msa1398170:CDS | 40.0% | |
! | GATGAGGAGTATGAAGATGA+TGG | + | tig0022246:20643-20662 | Msa1398170:CDS | 40.0% |
GAGATTGAGTAATGTGGAAG+AGG | + | tig0022246:20678-20697 | Msa1398170:CDS | 40.0% | |
ATTGAGTAATGTGGAAGAGG+TGG | + | tig0022246:20681-20700 | Msa1398170:CDS | 40.0% | |
! | AAGAGGTGGATGATTTTGGA+GGG | + | tig0022246:20695-20714 | Msa1398170:CDS | 40.0% |
! | ATGGCAAAACAAGATGATGG+AGG | + | tig0022246:20750-20769 | Msa1398170:CDS | 40.0% |
TTTATCCACTTGGCTTCCAT+CGG | - | tig0022246:20818-20837 | None:intergenic | 40.0% | |
AATCCTTCGCTTTATCCACT+TGG | - | tig0022246:20828-20847 | None:intergenic | 40.0% | |
GTGACAATGGAGAAGAATGT+CGG | + | tig0022246:20871-20890 | Msa1398170:CDS | 40.0% | |
TGACAATGGAGAAGAATGTC+GGG | + | tig0022246:20872-20891 | Msa1398170:CDS | 40.0% | |
TGAGGATCTTAGTAGCAATG+AGG | + | tig0022246:20966-20985 | Msa1398170:CDS | 40.0% | |
GGAAAAGAAGGCAATGAGAT+TGG | + | tig0022246:20987-21006 | Msa1398170:CDS | 40.0% | |
!! | GCCCAAGCAAAATTGATTTG+CGG | + | tig0022246:21019-21038 | Msa1398170:CDS | 40.0% |
!! | GCAAAATTGATTTGCGGAAG+CGG | + | tig0022246:21025-21044 | Msa1398170:CDS | 40.0% |
!! | TGTTGGTTTCGGATCCTGAT+GGG | - | tig0022246:19955-19974 | None:intergenic | 45.0% |
GCGACGGTATATTTCGATGA+CGG | - | tig0022246:20077-20096 | None:intergenic | 45.0% | |
CGAATTCATGAAGATCGCGA+CGG | - | tig0022246:20093-20112 | None:intergenic | 45.0% | |
CGTCGCGATCTTCATGAATT+CGG | + | tig0022246:20091-20110 | Msa1398170:CDS | 45.0% | |
GATCTTCATGAATTCGGCAC+AGG | + | tig0022246:20097-20116 | Msa1398170:CDS | 45.0% | |
ATTCGGCACAGGTTTGAAGA+AGG | + | tig0022246:20108-20127 | Msa1398170:CDS | 45.0% | |
TTGGTCAATGACGTGTCCAA+CGG | - | tig0022246:20164-20183 | None:intergenic | 45.0% | |
GGACACGTCATTGACCAATT+CGG | + | tig0022246:20166-20185 | Msa1398170:CDS | 45.0% | |
CTGAGCCGTTCCTTTAATCA+CGG | - | tig0022246:20197-20216 | None:intergenic | 45.0% | |
! | GTGGAAGTTGGAGTTTTCGT+TGG | + | tig0022246:20405-20424 | Msa1398170:CDS | 45.0% |
AAGAGGATGAGGACTTGAGT+TGG | + | tig0022246:20611-20630 | Msa1398170:CDS | 45.0% | |
AGAGGATGAGGACTTGAGTT+GGG | + | tig0022246:20612-20631 | Msa1398170:CDS | 45.0% | |
GAGTTGGGATGTTGAAGATG+AGG | + | tig0022246:20627-20646 | Msa1398170:CDS | 45.0% | |
! | GTGGAAGAGGTGGATGATTT+TGG | + | tig0022246:20691-20710 | Msa1398170:CDS | 45.0% |
! | GAAGAGGTGGATGATTTTGG+AGG | + | tig0022246:20694-20713 | Msa1398170:CDS | 45.0% |
!! | AGAGGTGGATGATTTTGGAG+GGG | + | tig0022246:20696-20715 | Msa1398170:CDS | 45.0% |
AAGCCAAGTGGATAAAGCGA+AGG | + | tig0022246:20822-20841 | Msa1398170:CDS | 45.0% | |
GGATAAAGCGAAGGATTCTG+TGG | + | tig0022246:20831-20850 | Msa1398170:CDS | 45.0% | |
GACAATGGAGAAGAATGTCG+GGG | + | tig0022246:20873-20892 | Msa1398170:CDS | 45.0% | |
AGGGGAAAAAAGAGCTTGAG+TGG | + | tig0022246:20935-20954 | Msa1398170:CDS | 45.0% | |
GGGGAAAAAAGAGCTTGAGT+GGG | + | tig0022246:20936-20955 | Msa1398170:CDS | 45.0% | |
!! | TGTTGGTTTCGGATCCTGAT+GGG | - | tig0022246:19955-19974 | None:intergenic | 45.0% |
GCGACGGTATATTTCGATGA+CGG | - | tig0022246:20077-20096 | None:intergenic | 45.0% | |
CGAATTCATGAAGATCGCGA+CGG | - | tig0022246:20093-20112 | None:intergenic | 45.0% | |
CGTCGCGATCTTCATGAATT+CGG | + | tig0022246:20091-20110 | Msa1398170:CDS | 45.0% | |
GATCTTCATGAATTCGGCAC+AGG | + | tig0022246:20097-20116 | Msa1398170:CDS | 45.0% | |
ATTCGGCACAGGTTTGAAGA+AGG | + | tig0022246:20108-20127 | Msa1398170:CDS | 45.0% | |
TTGGTCAATGACGTGTCCAA+CGG | - | tig0022246:20164-20183 | None:intergenic | 45.0% | |
GGACACGTCATTGACCAATT+CGG | + | tig0022246:20166-20185 | Msa1398170:CDS | 45.0% | |
CTGAGCCGTTCCTTTAATCA+CGG | - | tig0022246:20197-20216 | None:intergenic | 45.0% | |
! | GTGGAAGTTGGAGTTTTCGT+TGG | + | tig0022246:20405-20424 | Msa1398170:CDS | 45.0% |
AAGAGGATGAGGACTTGAGT+TGG | + | tig0022246:20611-20630 | Msa1398170:CDS | 45.0% | |
AGAGGATGAGGACTTGAGTT+GGG | + | tig0022246:20612-20631 | Msa1398170:CDS | 45.0% | |
GAGTTGGGATGTTGAAGATG+AGG | + | tig0022246:20627-20646 | Msa1398170:CDS | 45.0% | |
! | GTGGAAGAGGTGGATGATTT+TGG | + | tig0022246:20691-20710 | Msa1398170:CDS | 45.0% |
! | GAAGAGGTGGATGATTTTGG+AGG | + | tig0022246:20694-20713 | Msa1398170:CDS | 45.0% |
!! | AGAGGTGGATGATTTTGGAG+GGG | + | tig0022246:20696-20715 | Msa1398170:CDS | 45.0% |
AAGCCAAGTGGATAAAGCGA+AGG | + | tig0022246:20822-20841 | Msa1398170:CDS | 45.0% | |
GGATAAAGCGAAGGATTCTG+TGG | + | tig0022246:20831-20850 | Msa1398170:CDS | 45.0% | |
GACAATGGAGAAGAATGTCG+GGG | + | tig0022246:20873-20892 | Msa1398170:CDS | 45.0% | |
AGGGGAAAAAAGAGCTTGAG+TGG | + | tig0022246:20935-20954 | Msa1398170:CDS | 45.0% | |
GGGGAAAAAAGAGCTTGAGT+GGG | + | tig0022246:20936-20955 | Msa1398170:CDS | 45.0% | |
!! | GTGTTGGTTTCGGATCCTGA+TGG | - | tig0022246:19956-19975 | None:intergenic | 50.0% |
! | GGATTCGGATTTTTCGCCGA+AGG | - | tig0022246:20056-20075 | None:intergenic | 50.0% |
AGCTCGTGAAACGAATGTCG+AGG | + | tig0022246:20587-20606 | Msa1398170:CDS | 50.0% | |
GCTCGTGAAACGAATGTCGA+GGG | + | tig0022246:20588-20607 | Msa1398170:CDS | 50.0% | |
GAAACGAATGTCGAGGGAAG+AGG | + | tig0022246:20594-20613 | Msa1398170:CDS | 50.0% | |
AATGTCGAGGGAAGAGGATG+AGG | + | tig0022246:20600-20619 | Msa1398170:CDS | 50.0% | |
GTTGTTCAAGAGAAGGCCGA+TGG | + | tig0022246:20799-20818 | Msa1398170:CDS | 50.0% | |
ATGGAGAAGAATGTCGGGGA+TGG | + | tig0022246:20877-20896 | Msa1398170:CDS | 50.0% | |
GGTAAGTCAGAACTCTGAGC+AGG | + | tig0022246:20912-20931 | Msa1398170:CDS | 50.0% | |
AAGTCAGAACTCTGAGCAGG+AGG | + | tig0022246:20915-20934 | Msa1398170:CDS | 50.0% | |
AGTCAGAACTCTGAGCAGGA+GGG | + | tig0022246:20916-20935 | Msa1398170:CDS | 50.0% | |
GCTTGAGTGGGATGAGATTG+AGG | + | tig0022246:20948-20967 | Msa1398170:CDS | 50.0% | |
AAGGCAATGAGATTGGGGAG+TGG | + | tig0022246:20994-21013 | Msa1398170:CDS | 50.0% | |
! | TGATGATGATGAGCCTGCCA+AGG | + | tig0022246:21098-21117 | Msa1398170:CDS | 50.0% |
!! | GTGTTGGTTTCGGATCCTGA+TGG | - | tig0022246:19956-19975 | None:intergenic | 50.0% |
! | GGATTCGGATTTTTCGCCGA+AGG | - | tig0022246:20056-20075 | None:intergenic | 50.0% |
AGCTCGTGAAACGAATGTCG+AGG | + | tig0022246:20587-20606 | Msa1398170:CDS | 50.0% | |
GCTCGTGAAACGAATGTCGA+GGG | + | tig0022246:20588-20607 | Msa1398170:CDS | 50.0% | |
GAAACGAATGTCGAGGGAAG+AGG | + | tig0022246:20594-20613 | Msa1398170:CDS | 50.0% | |
AATGTCGAGGGAAGAGGATG+AGG | + | tig0022246:20600-20619 | Msa1398170:CDS | 50.0% | |
GTTGTTCAAGAGAAGGCCGA+TGG | + | tig0022246:20799-20818 | Msa1398170:CDS | 50.0% | |
ATGGAGAAGAATGTCGGGGA+TGG | + | tig0022246:20877-20896 | Msa1398170:CDS | 50.0% | |
GGTAAGTCAGAACTCTGAGC+AGG | + | tig0022246:20912-20931 | Msa1398170:CDS | 50.0% | |
AAGTCAGAACTCTGAGCAGG+AGG | + | tig0022246:20915-20934 | Msa1398170:CDS | 50.0% | |
AGTCAGAACTCTGAGCAGGA+GGG | + | tig0022246:20916-20935 | Msa1398170:CDS | 50.0% | |
GCTTGAGTGGGATGAGATTG+AGG | + | tig0022246:20948-20967 | Msa1398170:CDS | 50.0% | |
AAGGCAATGAGATTGGGGAG+TGG | + | tig0022246:20994-21013 | Msa1398170:CDS | 50.0% | |
! | TGATGATGATGAGCCTGCCA+AGG | + | tig0022246:21098-21117 | Msa1398170:CDS | 50.0% |
! | AACCGTTTTCTCCGACGACC+CGG | + | tig0022246:19928-19947 | Msa1398170:CDS | 55.0% |
! | TTTCGGATCCTGATGGGTCC+GGG | - | tig0022246:19949-19968 | None:intergenic | 55.0% |
! | GTTTCGGATCCTGATGGGTC+CGG | - | tig0022246:19950-19969 | None:intergenic | 55.0% |
!! | GGAGGAAGCGGTGTTGGTTT+CGG | - | tig0022246:19966-19985 | None:intergenic | 55.0% |
GTGGGATTGAACGGCACGTT+TGG | - | tig0022246:19998-20017 | None:intergenic | 55.0% | |
! | AACGTGCCGTTCAATCCCAC+CGG | + | tig0022246:19998-20017 | Msa1398170:CDS | 55.0% |
! | ATGTTCTTCCACGTGCCGGT+GGG | - | tig0022246:20016-20035 | None:intergenic | 55.0% |
ACCGGCACGTGGAAGAACAT+CGG | + | tig0022246:20016-20035 | Msa1398170:CDS | 55.0% | |
CACGACTCTCTCGAAACCGT+TGG | + | tig0022246:20145-20164 | Msa1398170:CDS | 55.0% | |
CGGGGATGGAAAGTCTTCAG+AGG | + | tig0022246:20891-20910 | Msa1398170:CDS | 55.0% | |
GTCAGAACTCTGAGCAGGAG+GGG | + | tig0022246:20917-20936 | Msa1398170:CDS | 55.0% | |
! | AACCGTTTTCTCCGACGACC+CGG | + | tig0022246:19928-19947 | Msa1398170:CDS | 55.0% |
! | TTTCGGATCCTGATGGGTCC+GGG | - | tig0022246:19949-19968 | None:intergenic | 55.0% |
! | GTTTCGGATCCTGATGGGTC+CGG | - | tig0022246:19950-19969 | None:intergenic | 55.0% |
!! | GGAGGAAGCGGTGTTGGTTT+CGG | - | tig0022246:19966-19985 | None:intergenic | 55.0% |
GTGGGATTGAACGGCACGTT+TGG | - | tig0022246:19998-20017 | None:intergenic | 55.0% | |
! | AACGTGCCGTTCAATCCCAC+CGG | + | tig0022246:19998-20017 | Msa1398170:CDS | 55.0% |
! | ATGTTCTTCCACGTGCCGGT+GGG | - | tig0022246:20016-20035 | None:intergenic | 55.0% |
ACCGGCACGTGGAAGAACAT+CGG | + | tig0022246:20016-20035 | Msa1398170:CDS | 55.0% | |
CACGACTCTCTCGAAACCGT+TGG | + | tig0022246:20145-20164 | Msa1398170:CDS | 55.0% | |
CGGGGATGGAAAGTCTTCAG+AGG | + | tig0022246:20891-20910 | Msa1398170:CDS | 55.0% | |
GTCAGAACTCTGAGCAGGAG+GGG | + | tig0022246:20917-20936 | Msa1398170:CDS | 55.0% | |
GTCCGGGTCGTCGGAGAAAA+CGG | - | tig0022246:19933-19952 | None:intergenic | 60.0% | |
! | CACGTGCCGGTGGGATTGAA+CGG | - | tig0022246:20007-20026 | None:intergenic | 60.0% |
GATGTTCTTCCACGTGCCGG+TGG | - | tig0022246:20017-20036 | None:intergenic | 60.0% | |
GCCGATGTTCTTCCACGTGC+CGG | - | tig0022246:20020-20039 | None:intergenic | 60.0% | |
GAAGGCCGATGGAAGCCAAG+TGG | + | tig0022246:20810-20829 | Msa1398170:CDS | 60.0% | |
GTCCGGGTCGTCGGAGAAAA+CGG | - | tig0022246:19933-19952 | None:intergenic | 60.0% | |
! | CACGTGCCGGTGGGATTGAA+CGG | - | tig0022246:20007-20026 | None:intergenic | 60.0% |
GATGTTCTTCCACGTGCCGG+TGG | - | tig0022246:20017-20036 | None:intergenic | 60.0% | |
GCCGATGTTCTTCCACGTGC+CGG | - | tig0022246:20020-20039 | None:intergenic | 60.0% | |
GAAGGCCGATGGAAGCCAAG+TGG | + | tig0022246:20810-20829 | Msa1398170:CDS | 60.0% | |
! | TCCTGATGGGTCCGGGTCGT+CGG | - | tig0022246:19942-19961 | None:intergenic | 65.0% |
GTCGCTGGAGGAAGCGGTGT+TGG | - | tig0022246:19972-19991 | None:intergenic | 65.0% | |
TGGCGAGTCGCTGGAGGAAG+CGG | - | tig0022246:19978-19997 | None:intergenic | 65.0% | |
CACGTTTGGCGAGTCGCTGG+AGG | - | tig0022246:19984-20003 | None:intergenic | 65.0% | |
CGTTCAATCCCACCGGCACG+TGG | + | tig0022246:20005-20024 | Msa1398170:CDS | 65.0% | |
! | TCCTGATGGGTCCGGGTCGT+CGG | - | tig0022246:19942-19961 | None:intergenic | 65.0% |
GTCGCTGGAGGAAGCGGTGT+TGG | - | tig0022246:19972-19991 | None:intergenic | 65.0% | |
TGGCGAGTCGCTGGAGGAAG+CGG | - | tig0022246:19978-19997 | None:intergenic | 65.0% | |
CACGTTTGGCGAGTCGCTGG+AGG | - | tig0022246:19984-20003 | None:intergenic | 65.0% | |
CGTTCAATCCCACCGGCACG+TGG | + | tig0022246:20005-20024 | Msa1398170:CDS | 65.0% | |
TCCGACGACCCGGACCCATC+AGG | + | tig0022246:19938-19957 | Msa1398170:CDS | 70.0% | |
CGGCACGTTTGGCGAGTCGC+TGG | - | tig0022246:19987-20006 | None:intergenic | 70.0% | |
TCCGACGACCCGGACCCATC+AGG | + | tig0022246:19938-19957 | Msa1398170:CDS | 70.0% | |
CGGCACGTTTGGCGAGTCGC+TGG | - | tig0022246:19987-20006 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0022246 | gene | 19914 | 21125 | 19914 | ID=Msa1398170;Name=Msa1398170 |
tig0022246 | mRNA | 19914 | 21125 | 19914 | ID=Msa1398170-mRNA-1;Parent=Msa1398170;Name=Msa1398170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|403 |
tig0022246 | exon | 19914 | 21125 | 19914 | ID=Msa1398170-mRNA-1:exon:16448;Parent=Msa1398170-mRNA-1 |
tig0022246 | CDS | 19914 | 21125 | 19914 | ID=Msa1398170-mRNA-1:cds;Parent=Msa1398170-mRNA-1 |
Gene Sequence |
Protein sequence |