AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398170 MtrunA17_Chr7g0259331 90.347 404 35 4 1 403 1 401 0.0 625
Msa1398170 MtrunA17_Chr1g0196521 49.787 470 158 15 1 403 1 459 2.33e-108 326
Msa1398170 MtrunA17_Chr2g0287041 38.222 450 185 13 1 397 1 410 2.03e-68 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398170 AT1G03350.1 43.074 462 185 12 1 391 1 455 2.36e-97 299
Msa1398170 AT4G13110.1 45.089 224 95 3 41 245 25 239 2.55e-50 172

Find 97 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAGAGGTGGATGATTT+TGG 0.211405 tig0022246:+20691 Msa1398170:CDS
GTGAAAAGAACAATAGTTTA+TGG 0.221360 tig0022246:+20731 Msa1398170:CDS
TTCGGAAACACCGTGATTAA+AGG 0.270210 tig0022246:+20184 Msa1398170:CDS
ATATTATTATAAGGTTTATA+AGG 0.296101 tig0022246:+20537 Msa1398170:CDS
TGGTTCCTAATGTTGTTGAT+AGG 0.315634 tig0022246:+20497 Msa1398170:CDS
GGAGGAAGCGGTGTTGGTTT+CGG 0.333017 tig0022246:-19963 None:intergenic
ATCAAAAGTTGATGAGCATT+TGG 0.347807 tig0022246:+20774 Msa1398170:CDS
TAATCACGGTGTTTCCGAAT+TGG 0.350294 tig0022246:-20180 None:intergenic
GTGGGATTGAACGGCACGTT+TGG 0.387195 tig0022246:-19995 None:intergenic
TTGGTTGAGATATTATTATA+AGG 0.389321 tig0022246:+20528 Msa1398170:CDS
GTTTCCCTATCAACAACATT+AGG 0.391217 tig0022246:-20502 None:intergenic
GTATATTTCGATGACGGATT+CGG 0.397326 tig0022246:-20068 None:intergenic
GAAAAGAAGGCAATGAGATT+GGG 0.398844 tig0022246:+20988 Msa1398170:CDS
TCGAATCAGATTCTGATTCA+AGG 0.403786 tig0022246:-20243 None:intergenic
GTTTCGGATCCTGATGGGTC+CGG 0.405959 tig0022246:-19947 None:intergenic
AAGAAGAAGAAGATTTGAGT+TGG 0.406673 tig0022246:+21064 Msa1398170:CDS
GGAAAAGAAGGCAATGAGAT+TGG 0.407669 tig0022246:+20987 Msa1398170:CDS
AGAAGAAGAAGATTTGAGTT+GGG 0.413686 tig0022246:+21065 Msa1398170:CDS
GTTAAGAGAGAATGATGAAA+TGG 0.416221 tig0022246:+20456 Msa1398170:CDS
AAATGGAGAGTGTATTTAGA+AGG 0.417338 tig0022246:+20473 Msa1398170:CDS
GCGGTATAATAAGTGGAAGT+TGG 0.440753 tig0022246:+20393 Msa1398170:CDS
GCAAAATTGATTTGCGGAAG+CGG 0.446892 tig0022246:+21025 Msa1398170:CDS
GGAGAGTGTATTTAGAAGGT+TGG 0.446991 tig0022246:+20477 Msa1398170:CDS
AGAGGATGAGGACTTGAGTT+GGG 0.453903 tig0022246:+20612 Msa1398170:CDS
GAAACGAATGTCGAGGGAAG+AGG 0.455231 tig0022246:+20594 Msa1398170:CDS
GTCGCTGGAGGAAGCGGTGT+TGG 0.456019 tig0022246:-19969 None:intergenic
CGTCGCGATCTTCATGAATT+CGG 0.457351 tig0022246:+20091 Msa1398170:CDS
CGGCACGTTTGGCGAGTCGC+TGG 0.457531 tig0022246:-19984 None:intergenic
AAGAGGATGAGGACTTGAGT+TGG 0.459371 tig0022246:+20611 Msa1398170:CDS
GAGATTGAGTAATGTGGAAG+AGG 0.460129 tig0022246:+20678 Msa1398170:CDS
GCTCAAATTCGTGCAATTCA+AGG 0.465155 tig0022246:+20331 Msa1398170:CDS
TTATACCGCTCCAAATCAAA+AGG 0.467584 tig0022246:-20379 None:intergenic
GGTTCCTAATGTTGTTGATA+GGG 0.469145 tig0022246:+20498 Msa1398170:CDS
AATAAATCTCAAGCCTTGGC+AGG 0.469300 tig0022246:-21111 None:intergenic
TGGCGAGTCGCTGGAGGAAG+CGG 0.470447 tig0022246:-19975 None:intergenic
CACGTGCCGGTGGGATTGAA+CGG 0.481249 tig0022246:-20004 None:intergenic
TTTCGGATCCTGATGGGTCC+GGG 0.481976 tig0022246:-19946 None:intergenic
ATTTGGAGCGGTATAATAAG+TGG 0.482337 tig0022246:+20386 Msa1398170:CDS
TGACAATGGAGAAGAATGTC+GGG 0.483635 tig0022246:+20872 Msa1398170:CDS
GCCGATGTTCTTCCACGTGC+CGG 0.493880 tig0022246:-20017 None:intergenic
GTGTTGGTTTCGGATCCTGA+TGG 0.498195 tig0022246:-19953 None:intergenic
TGTTGGTTTCGGATCCTGAT+GGG 0.501567 tig0022246:-19952 None:intergenic
GTCCGGGTCGTCGGAGAAAA+CGG 0.503245 tig0022246:-19930 None:intergenic
GGACACGTCATTGACCAATT+CGG 0.509999 tig0022246:+20166 Msa1398170:CDS
TTTATCCACTTGGCTTCCAT+CGG 0.511757 tig0022246:-20815 None:intergenic
AATGTCGAGGGAAGAGGATG+AGG 0.511956 tig0022246:+20600 Msa1398170:CDS
GCTTGAGTGGGATGAGATTG+AGG 0.513354 tig0022246:+20948 Msa1398170:CDS
AAAAGAAGGCAATGAGATTG+GGG 0.517259 tig0022246:+20989 Msa1398170:CDS
AATCCTTCGCTTTATCCACT+TGG 0.517564 tig0022246:-20825 None:intergenic
TAGTAGCAATGAGGAAAAGA+AGG 0.522851 tig0022246:+20975 Msa1398170:CDS
GCCCAAGCAAAATTGATTTG+CGG 0.523784 tig0022246:+21019 Msa1398170:CDS
TTTATGGCAAAACAAGATGA+TGG 0.527238 tig0022246:+20747 Msa1398170:CDS
GTATAATAAATCTCAAGCCT+TGG 0.537750 tig0022246:-21115 None:intergenic
TCCGACGACCCGGACCCATC+AGG 0.538011 tig0022246:+19938 Msa1398170:CDS
GATCTTCATGAATTCGGCAC+AGG 0.539054 tig0022246:+20097 Msa1398170:CDS
TTTGGATGTTGTTCAAGAGA+AGG 0.539257 tig0022246:+20792 Msa1398170:CDS
ATTGAGTAATGTGGAAGAGG+TGG 0.540140 tig0022246:+20681 Msa1398170:CDS
ATTCGGCACAGGTTTGAAGA+AGG 0.541645 tig0022246:+20108 Msa1398170:CDS
GGTAAGTCAGAACTCTGAGC+AGG 0.548440 tig0022246:+20912 Msa1398170:CDS
ATGGAGAAGAATGTCGGGGA+TGG 0.549119 tig0022246:+20877 Msa1398170:CDS
GGCAACCTAATCAAAACCTT+CGG 0.549557 tig0022246:+20037 Msa1398170:CDS
GATGTTCTTCCACGTGCCGG+TGG 0.551346 tig0022246:-20014 None:intergenic
TTGGTCAATGACGTGTCCAA+CGG 0.553179 tig0022246:-20161 None:intergenic
CTGAGCCGTTCCTTTAATCA+CGG 0.557516 tig0022246:-20194 None:intergenic
CACGACTCTCTCGAAACCGT+TGG 0.558594 tig0022246:+20145 Msa1398170:CDS
ATGTTCTTCCACGTGCCGGT+GGG 0.564459 tig0022246:-20013 None:intergenic
GTGACAATGGAGAAGAATGT+CGG 0.570801 tig0022246:+20871 Msa1398170:CDS
AAGTCAGAACTCTGAGCAGG+AGG 0.571371 tig0022246:+20915 Msa1398170:CDS
AAGAGGATTAAGAAACAGAG+TGG 0.572235 tig0022246:+20277 Msa1398170:CDS
CACGTTTGGCGAGTCGCTGG+AGG 0.588279 tig0022246:-19981 None:intergenic
AGTCAGAACTCTGAGCAGGA+GGG 0.591570 tig0022246:+20916 Msa1398170:CDS
AAGGCAATGAGATTGGGGAG+TGG 0.594208 tig0022246:+20994 Msa1398170:CDS
GTCAGAACTCTGAGCAGGAG+GGG 0.595465 tig0022246:+20917 Msa1398170:CDS
TTAAGAAAGCTGAGGATGTG+AGG 0.599039 tig0022246:+20560 Msa1398170:CDS
GATGAGGAGTATGAAGATGA+TGG 0.606982 tig0022246:+20643 Msa1398170:CDS
AACGTGCCGTTCAATCCCAC+CGG 0.612627 tig0022246:+19998 Msa1398170:CDS
TTCTGATAAGAAAGTGACAA+TGG 0.614400 tig0022246:+20858 Msa1398170:CDS
CGTTCAATCCCACCGGCACG+TGG 0.618792 tig0022246:+20005 Msa1398170:CDS
TAAGAAAGCTGAGGATGTGA+GGG 0.620596 tig0022246:+20561 Msa1398170:CDS
GTTGTTCAAGAGAAGGCCGA+TGG 0.623363 tig0022246:+20799 Msa1398170:CDS
AGCTCGTGAAACGAATGTCG+AGG 0.623979 tig0022246:+20587 Msa1398170:CDS
AAACACCGTGATTAAAGGAA+CGG 0.625585 tig0022246:+20189 Msa1398170:CDS
GCGACGGTATATTTCGATGA+CGG 0.630669 tig0022246:-20074 None:intergenic
TTATAAGGTTAAGAAAGCTG+AGG 0.632810 tig0022246:+20552 Msa1398170:CDS
AAGCCAAGTGGATAAAGCGA+AGG 0.635396 tig0022246:+20822 Msa1398170:CDS
GAGTTGGGATGTTGAAGATG+AGG 0.640727 tig0022246:+20627 Msa1398170:CDS
TGATAAGAGATTGAGTAATG+TGG 0.641001 tig0022246:+20672 Msa1398170:CDS
GGATAAAGCGAAGGATTCTG+TGG 0.643867 tig0022246:+20831 Msa1398170:CDS
GCTCGTGAAACGAATGTCGA+GGG 0.648458 tig0022246:+20588 Msa1398170:CDS
TGATGATGATGAGCCTGCCA+AGG 0.653151 tig0022246:+21098 Msa1398170:CDS
CGGGGATGGAAAGTCTTCAG+AGG 0.655419 tig0022246:+20891 Msa1398170:CDS
ACCGGCACGTGGAAGAACAT+CGG 0.661066 tig0022246:+20016 Msa1398170:CDS
GAAGGCCGATGGAAGCCAAG+TGG 0.667743 tig0022246:+20810 Msa1398170:CDS
ATGGCAAAACAAGATGATGG+AGG 0.669587 tig0022246:+20750 Msa1398170:CDS
TGAGGATCTTAGTAGCAATG+AGG 0.687708 tig0022246:+20966 Msa1398170:CDS
CGAATTCATGAAGATCGCGA+CGG 0.695393 tig0022246:-20090 None:intergenic
GACAATGGAGAAGAATGTCG+GGG 0.696218 tig0022246:+20873 Msa1398170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATTATAAGGTTTATA+AGG + tig0022246:20537-20556 Msa1398170:CDS 10.0%
!! ATATTATTATAAGGTTTATA+AGG + tig0022246:20537-20556 Msa1398170:CDS 10.0%
!! TTGGTTGAGATATTATTATA+AGG + tig0022246:20528-20547 Msa1398170:CDS 20.0%
!! TTGGTTGAGATATTATTATA+AGG + tig0022246:20528-20547 Msa1398170:CDS 20.0%
! GTGAAAAGAACAATAGTTTA+TGG + tig0022246:20731-20750 Msa1398170:CDS 25.0%
! GTGAAAAGAACAATAGTTTA+TGG + tig0022246:20731-20750 Msa1398170:CDS 25.0%
!! TACAGAAGAACCTTTTGATT+TGG + tig0022246:20369-20388 Msa1398170:CDS 30.0%
GTTAAGAGAGAATGATGAAA+TGG + tig0022246:20456-20475 Msa1398170:CDS 30.0%
! AAATGGAGAGTGTATTTAGA+AGG + tig0022246:20473-20492 Msa1398170:CDS 30.0%
!! TTGTTGATAGGGAAACTTTT+TGG + tig0022246:20509-20528 Msa1398170:CDS 30.0%
TTATAAGGTTAAGAAAGCTG+AGG + tig0022246:20552-20571 Msa1398170:CDS 30.0%
TGATAAGAGATTGAGTAATG+TGG + tig0022246:20672-20691 Msa1398170:CDS 30.0%
TTTATGGCAAAACAAGATGA+TGG + tig0022246:20747-20766 Msa1398170:CDS 30.0%
!! ATCAAAAGTTGATGAGCATT+TGG + tig0022246:20774-20793 Msa1398170:CDS 30.0%
TTCTGATAAGAAAGTGACAA+TGG + tig0022246:20858-20877 Msa1398170:CDS 30.0%
AAGAAGAAGAAGATTTGAGT+TGG + tig0022246:21064-21083 Msa1398170:CDS 30.0%
! AGAAGAAGAAGATTTGAGTT+GGG + tig0022246:21065-21084 Msa1398170:CDS 30.0%
!! TACAGAAGAACCTTTTGATT+TGG + tig0022246:20369-20388 Msa1398170:CDS 30.0%
GTTAAGAGAGAATGATGAAA+TGG + tig0022246:20456-20475 Msa1398170:CDS 30.0%
! AAATGGAGAGTGTATTTAGA+AGG + tig0022246:20473-20492 Msa1398170:CDS 30.0%
!! TTGTTGATAGGGAAACTTTT+TGG + tig0022246:20509-20528 Msa1398170:CDS 30.0%
TTATAAGGTTAAGAAAGCTG+AGG + tig0022246:20552-20571 Msa1398170:CDS 30.0%
TGATAAGAGATTGAGTAATG+TGG + tig0022246:20672-20691 Msa1398170:CDS 30.0%
TTTATGGCAAAACAAGATGA+TGG + tig0022246:20747-20766 Msa1398170:CDS 30.0%
!! ATCAAAAGTTGATGAGCATT+TGG + tig0022246:20774-20793 Msa1398170:CDS 30.0%
TTCTGATAAGAAAGTGACAA+TGG + tig0022246:20858-20877 Msa1398170:CDS 30.0%
AAGAAGAAGAAGATTTGAGT+TGG + tig0022246:21064-21083 Msa1398170:CDS 30.0%
! AGAAGAAGAAGATTTGAGTT+GGG + tig0022246:21065-21084 Msa1398170:CDS 30.0%
!! GTATATTTCGATGACGGATT+CGG - tig0022246:20071-20090 None:intergenic 35.0%
AAACACCGTGATTAAAGGAA+CGG + tig0022246:20189-20208 Msa1398170:CDS 35.0%
TCGAATCAGATTCTGATTCA+AGG - tig0022246:20246-20265 None:intergenic 35.0%
ATTCGAAGAAGAAGAAGAAG+AGG + tig0022246:20260-20279 Msa1398170:CDS 35.0%
AAGAGGATTAAGAAACAGAG+TGG + tig0022246:20277-20296 Msa1398170:CDS 35.0%
!!! AAGAACCTTTTGATTTGGAG+CGG + tig0022246:20374-20393 Msa1398170:CDS 35.0%
TTATACCGCTCCAAATCAAA+AGG - tig0022246:20382-20401 None:intergenic 35.0%
! ATTTGGAGCGGTATAATAAG+TGG + tig0022246:20386-20405 Msa1398170:CDS 35.0%
TGGTTCCTAATGTTGTTGAT+AGG + tig0022246:20497-20516 Msa1398170:CDS 35.0%
GGTTCCTAATGTTGTTGATA+GGG + tig0022246:20498-20517 Msa1398170:CDS 35.0%
GTTTCCCTATCAACAACATT+AGG - tig0022246:20505-20524 None:intergenic 35.0%
TTTGGATGTTGTTCAAGAGA+AGG + tig0022246:20792-20811 Msa1398170:CDS 35.0%
TAGTAGCAATGAGGAAAAGA+AGG + tig0022246:20975-20994 Msa1398170:CDS 35.0%
GAAAAGAAGGCAATGAGATT+GGG + tig0022246:20988-21007 Msa1398170:CDS 35.0%
AAAAGAAGGCAATGAGATTG+GGG + tig0022246:20989-21008 Msa1398170:CDS 35.0%
! TCCGCAAATCAATTTTGCTT+GGG - tig0022246:21023-21042 None:intergenic 35.0%
! TTCCGCAAATCAATTTTGCT+TGG - tig0022246:21024-21043 None:intergenic 35.0%
!! GTATATTTCGATGACGGATT+CGG - tig0022246:20071-20090 None:intergenic 35.0%
AAACACCGTGATTAAAGGAA+CGG + tig0022246:20189-20208 Msa1398170:CDS 35.0%
TCGAATCAGATTCTGATTCA+AGG - tig0022246:20246-20265 None:intergenic 35.0%
ATTCGAAGAAGAAGAAGAAG+AGG + tig0022246:20260-20279 Msa1398170:CDS 35.0%
AAGAGGATTAAGAAACAGAG+TGG + tig0022246:20277-20296 Msa1398170:CDS 35.0%
!!! AAGAACCTTTTGATTTGGAG+CGG + tig0022246:20374-20393 Msa1398170:CDS 35.0%
TTATACCGCTCCAAATCAAA+AGG - tig0022246:20382-20401 None:intergenic 35.0%
! ATTTGGAGCGGTATAATAAG+TGG + tig0022246:20386-20405 Msa1398170:CDS 35.0%
TGGTTCCTAATGTTGTTGAT+AGG + tig0022246:20497-20516 Msa1398170:CDS 35.0%
GGTTCCTAATGTTGTTGATA+GGG + tig0022246:20498-20517 Msa1398170:CDS 35.0%
GTTTCCCTATCAACAACATT+AGG - tig0022246:20505-20524 None:intergenic 35.0%
TTTGGATGTTGTTCAAGAGA+AGG + tig0022246:20792-20811 Msa1398170:CDS 35.0%
TAGTAGCAATGAGGAAAAGA+AGG + tig0022246:20975-20994 Msa1398170:CDS 35.0%
GAAAAGAAGGCAATGAGATT+GGG + tig0022246:20988-21007 Msa1398170:CDS 35.0%
AAAAGAAGGCAATGAGATTG+GGG + tig0022246:20989-21008 Msa1398170:CDS 35.0%
! TCCGCAAATCAATTTTGCTT+GGG - tig0022246:21023-21042 None:intergenic 35.0%
! TTCCGCAAATCAATTTTGCT+TGG - tig0022246:21024-21043 None:intergenic 35.0%
GGCAACCTAATCAAAACCTT+CGG + tig0022246:20037-20056 Msa1398170:CDS 40.0%
!!! TTTCGCCGAAGGTTTTGATT+AGG - tig0022246:20045-20064 None:intergenic 40.0%
TAATCACGGTGTTTCCGAAT+TGG - tig0022246:20183-20202 None:intergenic 40.0%
TTCGGAAACACCGTGATTAA+AGG + tig0022246:20184-20203 Msa1398170:CDS 40.0%
GCTCAAATTCGTGCAATTCA+AGG + tig0022246:20331-20350 Msa1398170:CDS 40.0%
GCGGTATAATAAGTGGAAGT+TGG + tig0022246:20393-20412 Msa1398170:CDS 40.0%
! AAGTTGGAGTTTTCGTTGGA+AGG + tig0022246:20409-20428 Msa1398170:CDS 40.0%
! AGTTGGAGTTTTCGTTGGAA+GGG + tig0022246:20410-20429 Msa1398170:CDS 40.0%
! GTTTTCGTTGGAAGGGAAAA+AGG + tig0022246:20417-20436 Msa1398170:CDS 40.0%
GGAAGGGAAAAAGGATGAAA+TGG + tig0022246:20426-20445 Msa1398170:CDS 40.0%
! GGAGAGTGTATTTAGAAGGT+TGG + tig0022246:20477-20496 Msa1398170:CDS 40.0%
TTAAGAAAGCTGAGGATGTG+AGG + tig0022246:20560-20579 Msa1398170:CDS 40.0%
TAAGAAAGCTGAGGATGTGA+GGG + tig0022246:20561-20580 Msa1398170:CDS 40.0%
! GATGAGGAGTATGAAGATGA+TGG + tig0022246:20643-20662 Msa1398170:CDS 40.0%
GAGATTGAGTAATGTGGAAG+AGG + tig0022246:20678-20697 Msa1398170:CDS 40.0%
ATTGAGTAATGTGGAAGAGG+TGG + tig0022246:20681-20700 Msa1398170:CDS 40.0%
! AAGAGGTGGATGATTTTGGA+GGG + tig0022246:20695-20714 Msa1398170:CDS 40.0%
! ATGGCAAAACAAGATGATGG+AGG + tig0022246:20750-20769 Msa1398170:CDS 40.0%
TTTATCCACTTGGCTTCCAT+CGG - tig0022246:20818-20837 None:intergenic 40.0%
AATCCTTCGCTTTATCCACT+TGG - tig0022246:20828-20847 None:intergenic 40.0%
GTGACAATGGAGAAGAATGT+CGG + tig0022246:20871-20890 Msa1398170:CDS 40.0%
TGACAATGGAGAAGAATGTC+GGG + tig0022246:20872-20891 Msa1398170:CDS 40.0%
TGAGGATCTTAGTAGCAATG+AGG + tig0022246:20966-20985 Msa1398170:CDS 40.0%
GGAAAAGAAGGCAATGAGAT+TGG + tig0022246:20987-21006 Msa1398170:CDS 40.0%
!! GCCCAAGCAAAATTGATTTG+CGG + tig0022246:21019-21038 Msa1398170:CDS 40.0%
!! GCAAAATTGATTTGCGGAAG+CGG + tig0022246:21025-21044 Msa1398170:CDS 40.0%
GGCAACCTAATCAAAACCTT+CGG + tig0022246:20037-20056 Msa1398170:CDS 40.0%
!!! TTTCGCCGAAGGTTTTGATT+AGG - tig0022246:20045-20064 None:intergenic 40.0%
TAATCACGGTGTTTCCGAAT+TGG - tig0022246:20183-20202 None:intergenic 40.0%
TTCGGAAACACCGTGATTAA+AGG + tig0022246:20184-20203 Msa1398170:CDS 40.0%
GCTCAAATTCGTGCAATTCA+AGG + tig0022246:20331-20350 Msa1398170:CDS 40.0%
GCGGTATAATAAGTGGAAGT+TGG + tig0022246:20393-20412 Msa1398170:CDS 40.0%
! AAGTTGGAGTTTTCGTTGGA+AGG + tig0022246:20409-20428 Msa1398170:CDS 40.0%
! AGTTGGAGTTTTCGTTGGAA+GGG + tig0022246:20410-20429 Msa1398170:CDS 40.0%
! GTTTTCGTTGGAAGGGAAAA+AGG + tig0022246:20417-20436 Msa1398170:CDS 40.0%
GGAAGGGAAAAAGGATGAAA+TGG + tig0022246:20426-20445 Msa1398170:CDS 40.0%
! GGAGAGTGTATTTAGAAGGT+TGG + tig0022246:20477-20496 Msa1398170:CDS 40.0%
TTAAGAAAGCTGAGGATGTG+AGG + tig0022246:20560-20579 Msa1398170:CDS 40.0%
TAAGAAAGCTGAGGATGTGA+GGG + tig0022246:20561-20580 Msa1398170:CDS 40.0%
! GATGAGGAGTATGAAGATGA+TGG + tig0022246:20643-20662 Msa1398170:CDS 40.0%
GAGATTGAGTAATGTGGAAG+AGG + tig0022246:20678-20697 Msa1398170:CDS 40.0%
ATTGAGTAATGTGGAAGAGG+TGG + tig0022246:20681-20700 Msa1398170:CDS 40.0%
! AAGAGGTGGATGATTTTGGA+GGG + tig0022246:20695-20714 Msa1398170:CDS 40.0%
! ATGGCAAAACAAGATGATGG+AGG + tig0022246:20750-20769 Msa1398170:CDS 40.0%
TTTATCCACTTGGCTTCCAT+CGG - tig0022246:20818-20837 None:intergenic 40.0%
AATCCTTCGCTTTATCCACT+TGG - tig0022246:20828-20847 None:intergenic 40.0%
GTGACAATGGAGAAGAATGT+CGG + tig0022246:20871-20890 Msa1398170:CDS 40.0%
TGACAATGGAGAAGAATGTC+GGG + tig0022246:20872-20891 Msa1398170:CDS 40.0%
TGAGGATCTTAGTAGCAATG+AGG + tig0022246:20966-20985 Msa1398170:CDS 40.0%
GGAAAAGAAGGCAATGAGAT+TGG + tig0022246:20987-21006 Msa1398170:CDS 40.0%
!! GCCCAAGCAAAATTGATTTG+CGG + tig0022246:21019-21038 Msa1398170:CDS 40.0%
!! GCAAAATTGATTTGCGGAAG+CGG + tig0022246:21025-21044 Msa1398170:CDS 40.0%
!! TGTTGGTTTCGGATCCTGAT+GGG - tig0022246:19955-19974 None:intergenic 45.0%
GCGACGGTATATTTCGATGA+CGG - tig0022246:20077-20096 None:intergenic 45.0%
CGAATTCATGAAGATCGCGA+CGG - tig0022246:20093-20112 None:intergenic 45.0%
CGTCGCGATCTTCATGAATT+CGG + tig0022246:20091-20110 Msa1398170:CDS 45.0%
GATCTTCATGAATTCGGCAC+AGG + tig0022246:20097-20116 Msa1398170:CDS 45.0%
ATTCGGCACAGGTTTGAAGA+AGG + tig0022246:20108-20127 Msa1398170:CDS 45.0%
TTGGTCAATGACGTGTCCAA+CGG - tig0022246:20164-20183 None:intergenic 45.0%
GGACACGTCATTGACCAATT+CGG + tig0022246:20166-20185 Msa1398170:CDS 45.0%
CTGAGCCGTTCCTTTAATCA+CGG - tig0022246:20197-20216 None:intergenic 45.0%
! GTGGAAGTTGGAGTTTTCGT+TGG + tig0022246:20405-20424 Msa1398170:CDS 45.0%
AAGAGGATGAGGACTTGAGT+TGG + tig0022246:20611-20630 Msa1398170:CDS 45.0%
AGAGGATGAGGACTTGAGTT+GGG + tig0022246:20612-20631 Msa1398170:CDS 45.0%
GAGTTGGGATGTTGAAGATG+AGG + tig0022246:20627-20646 Msa1398170:CDS 45.0%
! GTGGAAGAGGTGGATGATTT+TGG + tig0022246:20691-20710 Msa1398170:CDS 45.0%
! GAAGAGGTGGATGATTTTGG+AGG + tig0022246:20694-20713 Msa1398170:CDS 45.0%
!! AGAGGTGGATGATTTTGGAG+GGG + tig0022246:20696-20715 Msa1398170:CDS 45.0%
AAGCCAAGTGGATAAAGCGA+AGG + tig0022246:20822-20841 Msa1398170:CDS 45.0%
GGATAAAGCGAAGGATTCTG+TGG + tig0022246:20831-20850 Msa1398170:CDS 45.0%
GACAATGGAGAAGAATGTCG+GGG + tig0022246:20873-20892 Msa1398170:CDS 45.0%
AGGGGAAAAAAGAGCTTGAG+TGG + tig0022246:20935-20954 Msa1398170:CDS 45.0%
GGGGAAAAAAGAGCTTGAGT+GGG + tig0022246:20936-20955 Msa1398170:CDS 45.0%
!! TGTTGGTTTCGGATCCTGAT+GGG - tig0022246:19955-19974 None:intergenic 45.0%
GCGACGGTATATTTCGATGA+CGG - tig0022246:20077-20096 None:intergenic 45.0%
CGAATTCATGAAGATCGCGA+CGG - tig0022246:20093-20112 None:intergenic 45.0%
CGTCGCGATCTTCATGAATT+CGG + tig0022246:20091-20110 Msa1398170:CDS 45.0%
GATCTTCATGAATTCGGCAC+AGG + tig0022246:20097-20116 Msa1398170:CDS 45.0%
ATTCGGCACAGGTTTGAAGA+AGG + tig0022246:20108-20127 Msa1398170:CDS 45.0%
TTGGTCAATGACGTGTCCAA+CGG - tig0022246:20164-20183 None:intergenic 45.0%
GGACACGTCATTGACCAATT+CGG + tig0022246:20166-20185 Msa1398170:CDS 45.0%
CTGAGCCGTTCCTTTAATCA+CGG - tig0022246:20197-20216 None:intergenic 45.0%
! GTGGAAGTTGGAGTTTTCGT+TGG + tig0022246:20405-20424 Msa1398170:CDS 45.0%
AAGAGGATGAGGACTTGAGT+TGG + tig0022246:20611-20630 Msa1398170:CDS 45.0%
AGAGGATGAGGACTTGAGTT+GGG + tig0022246:20612-20631 Msa1398170:CDS 45.0%
GAGTTGGGATGTTGAAGATG+AGG + tig0022246:20627-20646 Msa1398170:CDS 45.0%
! GTGGAAGAGGTGGATGATTT+TGG + tig0022246:20691-20710 Msa1398170:CDS 45.0%
! GAAGAGGTGGATGATTTTGG+AGG + tig0022246:20694-20713 Msa1398170:CDS 45.0%
!! AGAGGTGGATGATTTTGGAG+GGG + tig0022246:20696-20715 Msa1398170:CDS 45.0%
AAGCCAAGTGGATAAAGCGA+AGG + tig0022246:20822-20841 Msa1398170:CDS 45.0%
GGATAAAGCGAAGGATTCTG+TGG + tig0022246:20831-20850 Msa1398170:CDS 45.0%
GACAATGGAGAAGAATGTCG+GGG + tig0022246:20873-20892 Msa1398170:CDS 45.0%
AGGGGAAAAAAGAGCTTGAG+TGG + tig0022246:20935-20954 Msa1398170:CDS 45.0%
GGGGAAAAAAGAGCTTGAGT+GGG + tig0022246:20936-20955 Msa1398170:CDS 45.0%
!! GTGTTGGTTTCGGATCCTGA+TGG - tig0022246:19956-19975 None:intergenic 50.0%
! GGATTCGGATTTTTCGCCGA+AGG - tig0022246:20056-20075 None:intergenic 50.0%
AGCTCGTGAAACGAATGTCG+AGG + tig0022246:20587-20606 Msa1398170:CDS 50.0%
GCTCGTGAAACGAATGTCGA+GGG + tig0022246:20588-20607 Msa1398170:CDS 50.0%
GAAACGAATGTCGAGGGAAG+AGG + tig0022246:20594-20613 Msa1398170:CDS 50.0%
AATGTCGAGGGAAGAGGATG+AGG + tig0022246:20600-20619 Msa1398170:CDS 50.0%
GTTGTTCAAGAGAAGGCCGA+TGG + tig0022246:20799-20818 Msa1398170:CDS 50.0%
ATGGAGAAGAATGTCGGGGA+TGG + tig0022246:20877-20896 Msa1398170:CDS 50.0%
GGTAAGTCAGAACTCTGAGC+AGG + tig0022246:20912-20931 Msa1398170:CDS 50.0%
AAGTCAGAACTCTGAGCAGG+AGG + tig0022246:20915-20934 Msa1398170:CDS 50.0%
AGTCAGAACTCTGAGCAGGA+GGG + tig0022246:20916-20935 Msa1398170:CDS 50.0%
GCTTGAGTGGGATGAGATTG+AGG + tig0022246:20948-20967 Msa1398170:CDS 50.0%
AAGGCAATGAGATTGGGGAG+TGG + tig0022246:20994-21013 Msa1398170:CDS 50.0%
! TGATGATGATGAGCCTGCCA+AGG + tig0022246:21098-21117 Msa1398170:CDS 50.0%
!! GTGTTGGTTTCGGATCCTGA+TGG - tig0022246:19956-19975 None:intergenic 50.0%
! GGATTCGGATTTTTCGCCGA+AGG - tig0022246:20056-20075 None:intergenic 50.0%
AGCTCGTGAAACGAATGTCG+AGG + tig0022246:20587-20606 Msa1398170:CDS 50.0%
GCTCGTGAAACGAATGTCGA+GGG + tig0022246:20588-20607 Msa1398170:CDS 50.0%
GAAACGAATGTCGAGGGAAG+AGG + tig0022246:20594-20613 Msa1398170:CDS 50.0%
AATGTCGAGGGAAGAGGATG+AGG + tig0022246:20600-20619 Msa1398170:CDS 50.0%
GTTGTTCAAGAGAAGGCCGA+TGG + tig0022246:20799-20818 Msa1398170:CDS 50.0%
ATGGAGAAGAATGTCGGGGA+TGG + tig0022246:20877-20896 Msa1398170:CDS 50.0%
GGTAAGTCAGAACTCTGAGC+AGG + tig0022246:20912-20931 Msa1398170:CDS 50.0%
AAGTCAGAACTCTGAGCAGG+AGG + tig0022246:20915-20934 Msa1398170:CDS 50.0%
AGTCAGAACTCTGAGCAGGA+GGG + tig0022246:20916-20935 Msa1398170:CDS 50.0%
GCTTGAGTGGGATGAGATTG+AGG + tig0022246:20948-20967 Msa1398170:CDS 50.0%
AAGGCAATGAGATTGGGGAG+TGG + tig0022246:20994-21013 Msa1398170:CDS 50.0%
! TGATGATGATGAGCCTGCCA+AGG + tig0022246:21098-21117 Msa1398170:CDS 50.0%
! AACCGTTTTCTCCGACGACC+CGG + tig0022246:19928-19947 Msa1398170:CDS 55.0%
! TTTCGGATCCTGATGGGTCC+GGG - tig0022246:19949-19968 None:intergenic 55.0%
! GTTTCGGATCCTGATGGGTC+CGG - tig0022246:19950-19969 None:intergenic 55.0%
!! GGAGGAAGCGGTGTTGGTTT+CGG - tig0022246:19966-19985 None:intergenic 55.0%
GTGGGATTGAACGGCACGTT+TGG - tig0022246:19998-20017 None:intergenic 55.0%
! AACGTGCCGTTCAATCCCAC+CGG + tig0022246:19998-20017 Msa1398170:CDS 55.0%
! ATGTTCTTCCACGTGCCGGT+GGG - tig0022246:20016-20035 None:intergenic 55.0%
ACCGGCACGTGGAAGAACAT+CGG + tig0022246:20016-20035 Msa1398170:CDS 55.0%
CACGACTCTCTCGAAACCGT+TGG + tig0022246:20145-20164 Msa1398170:CDS 55.0%
CGGGGATGGAAAGTCTTCAG+AGG + tig0022246:20891-20910 Msa1398170:CDS 55.0%
GTCAGAACTCTGAGCAGGAG+GGG + tig0022246:20917-20936 Msa1398170:CDS 55.0%
! AACCGTTTTCTCCGACGACC+CGG + tig0022246:19928-19947 Msa1398170:CDS 55.0%
! TTTCGGATCCTGATGGGTCC+GGG - tig0022246:19949-19968 None:intergenic 55.0%
! GTTTCGGATCCTGATGGGTC+CGG - tig0022246:19950-19969 None:intergenic 55.0%
!! GGAGGAAGCGGTGTTGGTTT+CGG - tig0022246:19966-19985 None:intergenic 55.0%
GTGGGATTGAACGGCACGTT+TGG - tig0022246:19998-20017 None:intergenic 55.0%
! AACGTGCCGTTCAATCCCAC+CGG + tig0022246:19998-20017 Msa1398170:CDS 55.0%
! ATGTTCTTCCACGTGCCGGT+GGG - tig0022246:20016-20035 None:intergenic 55.0%
ACCGGCACGTGGAAGAACAT+CGG + tig0022246:20016-20035 Msa1398170:CDS 55.0%
CACGACTCTCTCGAAACCGT+TGG + tig0022246:20145-20164 Msa1398170:CDS 55.0%
CGGGGATGGAAAGTCTTCAG+AGG + tig0022246:20891-20910 Msa1398170:CDS 55.0%
GTCAGAACTCTGAGCAGGAG+GGG + tig0022246:20917-20936 Msa1398170:CDS 55.0%
GTCCGGGTCGTCGGAGAAAA+CGG - tig0022246:19933-19952 None:intergenic 60.0%
! CACGTGCCGGTGGGATTGAA+CGG - tig0022246:20007-20026 None:intergenic 60.0%
GATGTTCTTCCACGTGCCGG+TGG - tig0022246:20017-20036 None:intergenic 60.0%
GCCGATGTTCTTCCACGTGC+CGG - tig0022246:20020-20039 None:intergenic 60.0%
GAAGGCCGATGGAAGCCAAG+TGG + tig0022246:20810-20829 Msa1398170:CDS 60.0%
GTCCGGGTCGTCGGAGAAAA+CGG - tig0022246:19933-19952 None:intergenic 60.0%
! CACGTGCCGGTGGGATTGAA+CGG - tig0022246:20007-20026 None:intergenic 60.0%
GATGTTCTTCCACGTGCCGG+TGG - tig0022246:20017-20036 None:intergenic 60.0%
GCCGATGTTCTTCCACGTGC+CGG - tig0022246:20020-20039 None:intergenic 60.0%
GAAGGCCGATGGAAGCCAAG+TGG + tig0022246:20810-20829 Msa1398170:CDS 60.0%
! TCCTGATGGGTCCGGGTCGT+CGG - tig0022246:19942-19961 None:intergenic 65.0%
GTCGCTGGAGGAAGCGGTGT+TGG - tig0022246:19972-19991 None:intergenic 65.0%
TGGCGAGTCGCTGGAGGAAG+CGG - tig0022246:19978-19997 None:intergenic 65.0%
CACGTTTGGCGAGTCGCTGG+AGG - tig0022246:19984-20003 None:intergenic 65.0%
CGTTCAATCCCACCGGCACG+TGG + tig0022246:20005-20024 Msa1398170:CDS 65.0%
! TCCTGATGGGTCCGGGTCGT+CGG - tig0022246:19942-19961 None:intergenic 65.0%
GTCGCTGGAGGAAGCGGTGT+TGG - tig0022246:19972-19991 None:intergenic 65.0%
TGGCGAGTCGCTGGAGGAAG+CGG - tig0022246:19978-19997 None:intergenic 65.0%
CACGTTTGGCGAGTCGCTGG+AGG - tig0022246:19984-20003 None:intergenic 65.0%
CGTTCAATCCCACCGGCACG+TGG + tig0022246:20005-20024 Msa1398170:CDS 65.0%
TCCGACGACCCGGACCCATC+AGG + tig0022246:19938-19957 Msa1398170:CDS 70.0%
CGGCACGTTTGGCGAGTCGC+TGG - tig0022246:19987-20006 None:intergenic 70.0%
TCCGACGACCCGGACCCATC+AGG + tig0022246:19938-19957 Msa1398170:CDS 70.0%
CGGCACGTTTGGCGAGTCGC+TGG - tig0022246:19987-20006 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0022246 gene 19914 21125 19914 ID=Msa1398170;Name=Msa1398170
tig0022246 mRNA 19914 21125 19914 ID=Msa1398170-mRNA-1;Parent=Msa1398170;Name=Msa1398170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|403
tig0022246 exon 19914 21125 19914 ID=Msa1398170-mRNA-1:exon:16448;Parent=Msa1398170-mRNA-1
tig0022246 CDS 19914 21125 19914 ID=Msa1398170-mRNA-1:cds;Parent=Msa1398170-mRNA-1
Gene Sequence

>Msa1398170

ATGAATTTCTTCAAAACCGTTTTCTCCGACGACCCGGACCCATCAGGATCCGAAACCAACACCGCTTCCTCCAGCGACTCGCCAAACGTGCCGTTCAATCCCACCGGCACGTGGAAGAACATCGGCAACCTAATCAAAACCTTCGGCGAAAAATCCGAATCCGTCATCGAAATATACCGTCGCGATCTTCATGAATTCGGCACAGGTTTGAAGAAGGAGATAGAAGTCGCACACGACTCTCTCGAAACCGTTGGACACGTCATTGACCAATTCGGAAACACCGTGATTAAAGGAACGGCTCAGATCATATCTCAAAGCAAAGACGCAATCCTTGAATCAGAATCTGATTCGAAGAAGAAGAAGAAGAGGATTAAGAAACAGAGTGGTTTGAATTCGAAGCTGTATAGTAGATTTGATGCTCAAATTCGTGCAATTCAAGGTGATTCTGATACTTATACAGAAGAACCTTTTGATTTGGAGCGGTATAATAAGTGGAAGTTGGAGTTTTCGTTGGAAGGGAAAAAGGATGAAATGGAAAAGTTGTTAAGAGAGAATGATGAAATGGAGAGTGTATTTAGAAGGTTGGTTCCTAATGTTGTTGATAGGGAAACTTTTTGGTTGAGATATTATTATAAGGTTTATAAGGTTAAGAAAGCTGAGGATGTGAGGGCGAAGCTCGTGAAACGAATGTCGAGGGAAGAGGATGAGGACTTGAGTTGGGATGTTGAAGATGAGGAGTATGAAGATGATGGCTTTGATGATAAGAGATTGAGTAATGTGGAAGAGGTGGATGATTTTGGAGGGGAAGAGTCTAAGAGTGAAAAGAACAATAGTTTATGGCAAAACAAGATGATGGAGGAATCAAAAGTTGATGAGCATTTGGATGTTGTTCAAGAGAAGGCCGATGGAAGCCAAGTGGATAAAGCGAAGGATTCTGTGGCTGTTTCTGATAAGAAAGTGACAATGGAGAAGAATGTCGGGGATGGAAAGTCTTCAGAGGTAAGTCAGAACTCTGAGCAGGAGGGGAAAAAAGAGCTTGAGTGGGATGAGATTGAGGATCTTAGTAGCAATGAGGAAAAGAAGGCAATGAGATTGGGGAGTGGTAGCCCAAGCAAAATTGATTTGCGGAAGCGGTTGAGTTCTGCAGCAGAAGAAGAAGAAGATTTGAGTTGGGATATTGAAGATGATGATGATGAGCCTGCCAAGGCTTGA

Protein sequence

>Msa1398170

MNFFKTVFSDDPDPSGSETNTASSSDSPNVPFNPTGTWKNIGNLIKTFGEKSESVIEIYRRDLHEFGTGLKKEIEVAHDSLETVGHVIDQFGNTVIKGTAQIISQSKDAILESESDSKKKKKRIKKQSGLNSKLYSRFDAQIRAIQGDSDTYTEEPFDLERYNKWKLEFSLEGKKDEMEKLLRENDEMESVFRRLVPNVVDRETFWLRYYYKVYKVKKAEDVRAKLVKRMSREEDEDLSWDVEDEEYEDDGFDDKRLSNVEEVDDFGGEESKSEKNNSLWQNKMMEESKVDEHLDVVQEKADGSQVDKAKDSVAVSDKKVTMEKNVGDGKSSEVSQNSEQEGKKELEWDEIEDLSSNEEKKAMRLGSGSPSKIDLRKRLSSAAEEEEDLSWDIEDDDDEPAKA*