AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175200 MtrunA17_Chr1g0160891 86.607 112 13 1 17 128 17 126 1.90e-64 197
Msa0175200 MtrunA17_Chr3g0085891 73.451 113 27 2 17 127 15 126 6.78e-52 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 88 sgRNAs with CRISPR-Local

Find 640 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAGACGGTTATGTAAAT+TGG 0.163349 1_4:-61077445 Msa0175200:CDS
TCGAATTTCAGCGTCGTAAA+TGG 0.202754 1_4:-61077707 Msa0175200:intron
TTCTTTCTGCTTGCGCTTGC+GGG 0.208913 1_4:+61077836 None:intergenic
GCCTGGTATTATCACTTTAC+TGG 0.212744 1_4:-61069683 Msa0175200:CDS
CAGATCTGCTCCTTATTTCT+TGG 0.214228 1_4:-61077400 Msa0175200:CDS
TCTGCTTGCGCTTGCGGGTT+AGG 0.224564 1_4:+61077841 None:intergenic
GTAGATGAATAAGTACATTT+TGG 0.228546 1_4:-61069383 Msa0175200:three_prime_UTR
CATATGAAATCACCTTCTTC+TGG 0.244250 1_4:+61076847 None:intergenic
CGCTTGCGGGTTAGGGATGC+AGG 0.249593 1_4:+61077849 None:intergenic
AGAATTACGAAGCTGTAATT+TGG 0.264417 1_4:+61069624 None:intergenic
TCATCATGCATCCTAGGAAT+TGG 0.282636 1_4:-61069280 Msa0175200:three_prime_UTR
AGTTTACGACGAATTTATTA+AGG 0.288971 1_4:-61077044 Msa0175200:CDS
GCTTATTGAGAAGTTAAATA+AGG 0.314668 1_4:-61069356 Msa0175200:three_prime_UTR
CTGCTTGCGCTTGCGGGTTA+GGG 0.326134 1_4:+61077842 None:intergenic
TTTATTAAGGAGTTGGTTCC+AGG 0.330389 1_4:-61077031 Msa0175200:intron
GAAGTTAAATAAGGTAATCT+TGG 0.337633 1_4:-61069347 Msa0175200:three_prime_UTR
GATTATAATGTTGATGATAC+TGG 0.337667 1_4:-61069706 Msa0175200:CDS
GCCTTCTCCTCCAAGAAATA+AGG 0.350680 1_4:+61077390 None:intergenic
CCAAGATGGTGATTATAATC+AGG 0.351090 1_4:-61074866 Msa0175200:intron
TTTCCACATTTCCTGCAATC+TGG 0.358352 1_4:-61069239 Msa0175200:three_prime_UTR
CTTCTTTCTGCTTGCGCTTG+CGG 0.380927 1_4:+61077835 None:intergenic
TCCTGCAATCTGGCACTACT+TGG 0.387316 1_4:-61069229 Msa0175200:three_prime_UTR
CATCATGCATCCTAGGAATT+GGG 0.390260 1_4:-61069279 Msa0175200:three_prime_UTR
ACCAAGTAGTGCCAGATTGC+AGG 0.392105 1_4:+61069228 None:intergenic
ATCTTGGGTTAATTTGTACT+TGG 0.401261 1_4:-61069331 Msa0175200:three_prime_UTR
CTTATTTCATCATGCATCCT+AGG 0.416017 1_4:-61069286 Msa0175200:three_prime_UTR
TAGCATGGACTATTGCTTCA+AGG 0.428466 1_4:-61069489 Msa0175200:three_prime_UTR
CATAGAAGCATCCACTTCTC+CGG 0.429191 1_4:+61077464 None:intergenic
GGCTGGCAGAGGAGGAGGAT+GGG 0.431458 1_4:-61077686 Msa0175200:CDS
CGACGAATTTATTAAGGAGT+TGG 0.435035 1_4:-61077038 Msa0175200:CDS
TGCATCCTAGGAATTGGGTT+TGG 0.441374 1_4:-61069274 Msa0175200:three_prime_UTR
ATCTGCTCCTTATTTCTTGG+AGG 0.442959 1_4:-61077397 Msa0175200:CDS
CCTGATTATAATCACCATCT+TGG 0.443552 1_4:+61074866 None:intergenic
TGAATTCTAAGCTATCTATA+TGG 0.444082 1_4:-61069550 Msa0175200:three_prime_UTR
ATATGAAATCACCTTCTTCT+GGG 0.447996 1_4:+61076848 None:intergenic
ACTTCTCCGGGTTTAGCATC+AGG 0.450187 1_4:+61077477 None:intergenic
TACTCGTGATTCTCTGCCAC+AGG 0.453424 1_4:-61077071 Msa0175200:CDS
TCCTTATTTCTTGGAGGAGA+AGG 0.454052 1_4:-61077391 Msa0175200:CDS
AAGTTAAATAAGGTAATCTT+GGG 0.464421 1_4:-61069346 Msa0175200:three_prime_UTR
TCTACTCAATCAACTACATA+AGG 0.466514 1_4:+61069401 None:intergenic
GGAGGAGAAGGCACAATTCA+AGG 0.468367 1_4:-61077379 Msa0175200:CDS
ACCATCTTGGAAATCATCTT+CGG 0.470010 1_4:+61074879 None:intergenic
GGATTCCGTGGACGTGGAAG+AGG 0.483614 1_4:-61077664 Msa0175200:CDS
GCTGGCAGAGGAGGAGGATG+GGG 0.488705 1_4:-61077685 Msa0175200:CDS
AGAAACCAAACCCAATTCCT+AGG 0.495396 1_4:+61069269 None:intergenic
GGATGGGGATTCCGTGGACG+TGG 0.497022 1_4:-61077670 Msa0175200:CDS
TCTTGGGTTAATTTGTACTT+GGG 0.511252 1_4:-61069330 Msa0175200:three_prime_UTR
CAGGTAAAACTATGCTGAGC+CGG 0.511315 1_4:-61076888 Msa0175200:CDS
CAGAGAATCACGAGTAAAGC+TGG 0.512092 1_4:+61077078 None:intergenic
ATAGAAGCATCCACTTCTCC+GGG 0.517532 1_4:+61077465 None:intergenic
TAAATGGCTGGCAGAGGAGG+AGG 0.522366 1_4:-61077691 Msa0175200:CDS
TGGCTGGCAGAGGAGGAGGA+TGG 0.533763 1_4:-61077687 Msa0175200:CDS
TGAAGAAAACGGTGGGATGA+AGG 0.541444 1_4:+61077782 None:intergenic
AAAGAAGTTACCGTCGTGAC+GGG 0.543662 1_4:-61077819 Msa0175200:five_prime_UTR
AATTTGCCTGATGCTAAACC+CGG 0.548121 1_4:-61077483 Msa0175200:CDS
GTATTACGTAGCAGTTAAGC+TGG 0.550673 1_4:+61069601 None:intergenic
TCGTAAATGGCTGGCAGAGG+AGG 0.554599 1_4:-61077694 Msa0175200:exon
TCCGAAGATGATTTCCAAGA+TGG 0.555090 1_4:-61074880 Msa0175200:CDS
ATTTCAGCGTCGTAAATGGC+TGG 0.557038 1_4:-61077703 Msa0175200:intron
GCGTCGTAAATGGCTGGCAG+AGG 0.562628 1_4:-61077697 Msa0175200:exon
CGTACATGGAACCCAGAAGA+AGG 0.566920 1_4:-61076859 Msa0175200:intron
AATGTTGATGATACTGGGCC+TGG 0.568289 1_4:-61069700 Msa0175200:CDS
AATCAAATAATTTCATATAG+CGG 0.570338 1_4:+61069455 None:intergenic
GCTTGCGGGTTAGGGATGCA+GGG 0.571875 1_4:+61077850 None:intergenic
GGAGGAGGATGGGGATTCCG+TGG 0.572114 1_4:-61077676 Msa0175200:CDS
GTGCCAGATTGCAGGAAATG+TGG 0.577214 1_4:+61069236 None:intergenic
GGAGAGATACCTGAAGAAAA+CGG 0.586283 1_4:+61077771 None:intergenic
TGATGCTAAACCCGGAGAAG+TGG 0.591064 1_4:-61077475 Msa0175200:CDS
ACCAGTAAAGTGATAATACC+AGG 0.593840 1_4:+61069682 None:intergenic
AAACAACAAATGGGACTGGA+CGG 0.594767 1_4:+61077632 None:intergenic
GAAAGAAGTTACCGTCGTGA+CGG 0.597776 1_4:-61077820 Msa0175200:five_prime_UTR
ATTATAATGTTGATGATACT+GGG 0.597876 1_4:-61069705 Msa0175200:CDS
GATGAAGTGGAAAATGAAGA+GGG 0.598186 1_4:-61074910 Msa0175200:intron
AGATGAAGTGGAAAATGAAG+AGG 0.599256 1_4:-61074911 Msa0175200:intron
TGGATGCTTCTATATTAGCA+TGG 0.602625 1_4:-61069504 Msa0175200:three_prime_UTR
GAGGAGAAGGCACAATTCAA+GGG 0.603074 1_4:-61077378 Msa0175200:intron
ATGCGCCTCTTCCACGTCCA+CGG 0.603927 1_4:+61077659 None:intergenic
AAGATATTATCATCAGCAAG+AGG 0.614405 1_4:+61069306 None:intergenic
ATGATTGTTTACTCATCCTG+TGG 0.626216 1_4:-61069524 Msa0175200:three_prime_UTR
AAGTGGATGCTTCTATGAGA+CGG 0.631722 1_4:-61077458 Msa0175200:CDS
GCTAATATAGAAGCATCCAC+AGG 0.644645 1_4:+61069508 None:intergenic
AGATACCTGAAGAAAACGGT+GGG 0.646036 1_4:+61077775 None:intergenic
TCGTCGTAAACTAAAACCTG+TGG 0.667322 1_4:+61077055 None:intergenic
AGCTGTAATTTGGAATACGA+TGG 0.671682 1_4:+61069634 None:intergenic
GAGATACCTGAAGAAAACGG+TGG 0.674964 1_4:+61077774 None:intergenic
CACCACGGTGCCCGTCACGA+CGG 0.677419 1_4:+61077809 None:intergenic
TACCGTCGTGACGGGCACCG+TGG 0.709475 1_4:-61077811 Msa0175200:five_prime_UTR
TGGGATGAAGGTGTGCACCA+CGG 0.725067 1_4:+61077794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAAATAAAAAGAAAA+AGG + chr1_4:61070246-61070265 None:intergenic 10.0%
!! GTATACATAAAAATATATAA+AGG + chr1_4:61070744-61070763 None:intergenic 10.0%
!!! ATTAGAATTCTAATTTTAAA+GGG + chr1_4:61071129-61071148 None:intergenic 10.0%
!!! AATTAGAATTCTAATTTTAA+AGG + chr1_4:61071130-61071149 None:intergenic 10.0%
!! AAAAAGTAAAAATTATTGTT+AGG + chr1_4:61071216-61071235 None:intergenic 10.0%
!!! AACAATAATTTTTACTTTTT+TGG - chr1_4:61071216-61071235 Msa0175200:intron 10.0%
!! TTTCTAATTAATTGTAAATT+TGG + chr1_4:61072823-61072842 None:intergenic 10.0%
!! ACTATTTATTTACAATATAT+TGG + chr1_4:61073677-61073696 None:intergenic 10.0%
!! TAAATAAAAAAAAGTTACCT+CGG + chr1_4:61069463-61069482 None:intergenic 15.0%
!! CTAATAATTTAGACTTAAAT+TGG - chr1_4:61070149-61070168 Msa0175200:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr1_4:61070489-61070508 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr1_4:61070592-61070611 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1_4:61070616-61070635 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1_4:61070615-61070634 Msa0175200:intron 15.0%
!! TCTGTGTAAAAAAAAAATAA+AGG + chr1_4:61071094-61071113 None:intergenic 15.0%
!!! TTATTTTTTTTTTACACAGA+AGG - chr1_4:61071094-61071113 Msa0175200:intron 15.0%
!!! TTCAATTTGAAAATTTTATG+GGG + chr1_4:61072312-61072331 None:intergenic 15.0%
!!! CTTCAATTTGAAAATTTTAT+GGG + chr1_4:61072313-61072332 None:intergenic 15.0%
!!! ACTTCAATTTGAAAATTTTA+TGG + chr1_4:61072314-61072333 None:intergenic 15.0%
!! ATTCAAAACTTGAAATTAAA+AGG - chr1_4:61075960-61075979 Msa0175200:intron 15.0%
!!! GATAATAAAAGAATAAGTTT+TGG - chr1_4:61076175-61076194 Msa0175200:intron 15.0%
!! ATGTAATATGTTTGTAAAAT+TGG - chr1_4:61077096-61077115 Msa0175200:CDS 15.0%
!!! AAAATTGGATTTTAGAAATA+AGG - chr1_4:61077111-61077130 Msa0175200:CDS 15.0%
!!! AAATTGGATTTTAGAAATAA+GGG - chr1_4:61077112-61077131 Msa0175200:CDS 15.0%
!! AATCAAATAATTTCATATAG+CGG + chr1_4:61077614-61077633 None:intergenic 15.0%
!! AAATAAAAAAAAGTTACCTC+GGG + chr1_4:61069462-61069481 None:intergenic 20.0%
!! TTACCAAATTACAATTAAAG+TGG - chr1_4:61069781-61069800 Msa0175200:intron 20.0%
!!! GAATGTTTTTAATGCTTATA+TGG - chr1_4:61069843-61069862 Msa0175200:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_4:61070606-61070625 Msa0175200:intron 20.0%
!! AAAATAAAGGAAAGAATTGT+AGG + chr1_4:61070870-61070889 None:intergenic 20.0%
!! ATCAATTAAGGAATCAAAAA+AGG + chr1_4:61070929-61070948 None:intergenic 20.0%
!!! AATCTGTAATTCTATTTTCT+AGG - chr1_4:61071059-61071078 Msa0175200:intron 20.0%
!!! ATTTAAAATGTCCATGTATT+TGG - chr1_4:61071147-61071166 Msa0175200:intron 20.0%
!!! TTTAAAATGTCCATGTATTT+GGG - chr1_4:61071148-61071167 Msa0175200:intron 20.0%
!!! TTTAATTTATCCCAAATACA+TGG + chr1_4:61071161-61071180 None:intergenic 20.0%
!!! TAGTATAGTTAGTATTTTAC+TGG - chr1_4:61071257-61071276 Msa0175200:intron 20.0%
!!! AGTATAGTTAGTATTTTACT+GGG - chr1_4:61071258-61071277 Msa0175200:intron 20.0%
!! AATTGAAGTTCTTAGAATAT+AGG - chr1_4:61072325-61072344 Msa0175200:intron 20.0%
!!! AGTTGATTTTCAATTGAATT+TGG + chr1_4:61072425-61072444 None:intergenic 20.0%
!! AAAGAATCAGATATAGATTA+AGG - chr1_4:61072456-61072475 Msa0175200:intron 20.0%
!! CTATTATGCTGAAATTAAAA+AGG + chr1_4:61073251-61073270 None:intergenic 20.0%
!!! AAGTTAAGATAAGATTTTGA+CGG + chr1_4:61074190-61074209 None:intergenic 20.0%
!!! ATCTTATCTTAACTTGTTAT+AGG - chr1_4:61074195-61074214 Msa0175200:intron 20.0%
!! ATGAACAATATGAAATTCTA+GGG + chr1_4:61075707-61075726 None:intergenic 20.0%
!! TATGAACAATATGAAATTCT+AGG + chr1_4:61075708-61075727 None:intergenic 20.0%
!! TTGTTCATATTAATCATAGA+TGG - chr1_4:61075719-61075738 Msa0175200:intron 20.0%
!! TTTATTATCACTAGAGATTA+AGG + chr1_4:61076164-61076183 None:intergenic 20.0%
!!! AAGAGAAATGAGATATTTTT+GGG - chr1_4:61076425-61076444 Msa0175200:intron 20.0%
!! TACGTAATATCAGTTTATTA+AGG + chr1_4:61076536-61076555 None:intergenic 20.0%
!! TCAAAGAATTATTAGTAGTT+TGG - chr1_4:61077149-61077168 Msa0175200:intron 20.0%
!! CAAAGAATTATTAGTAGTTT+GGG - chr1_4:61077150-61077169 Msa0175200:intron 20.0%
!! AAAGAATTATTAGTAGTTTG+GGG - chr1_4:61077151-61077170 Msa0175200:intron 20.0%
!!! ATTATAATGTTGATGATACT+GGG - chr1_4:61077361-61077380 Msa0175200:intron 20.0%
!!! TAGATGAATAAGTACATTTT+GGG - chr1_4:61077684-61077703 Msa0175200:CDS 20.0%
!! AAGTTAAATAAGGTAATCTT+GGG - chr1_4:61077720-61077739 Msa0175200:intron 20.0%
! TCACCACTTTAATTGTAATT+TGG + chr1_4:61069787-61069806 None:intergenic 25.0%
! AGTTTACGACGAATTTATTA+AGG - chr1_4:61070022-61070041 Msa0175200:intron 25.0%
! AGTCTAAATTATTAGTTACC+AGG + chr1_4:61070144-61070163 None:intergenic 25.0%
!! AGACTTAAATTGGTAATTTC+AGG - chr1_4:61070159-61070178 Msa0175200:intron 25.0%
! ATAATCAATACTCAGTAGAA+TGG + chr1_4:61070344-61070363 None:intergenic 25.0%
! TTGATTATTCCATGTACATA+TGG - chr1_4:61070356-61070375 Msa0175200:intron 25.0%
! GGAAAAAGTTATTATTGCAT+TGG + chr1_4:61070529-61070548 None:intergenic 25.0%
! AACTCACACTTAATCAATTA+AGG + chr1_4:61070941-61070960 None:intergenic 25.0%
! TAATATTGTGTTACGAGATA+TGG - chr1_4:61070967-61070986 Msa0175200:intron 25.0%
!!! TTTTTTTTACACAGAAGGTT+TGG - chr1_4:61071099-61071118 Msa0175200:intron 25.0%
!!! CACCATTTTTTTGTTATTAC+AGG - chr1_4:61071465-61071484 Msa0175200:intron 25.0%
!!! CATTTTTTTGTTATTACAGG+CGG - chr1_4:61071468-61071487 Msa0175200:intron 25.0%
! CTACAAAAACTAATGATCAA+GGG + chr1_4:61071657-61071676 None:intergenic 25.0%
! ACTACAAAAACTAATGATCA+AGG + chr1_4:61071658-61071677 None:intergenic 25.0%
! AGATTTCTATCTTCTGTTAT+AGG - chr1_4:61071879-61071898 Msa0175200:intron 25.0%
! TACAAAGAGAAAGTGATAAT+GGG + chr1_4:61071925-61071944 None:intergenic 25.0%
! TTACAAAGAGAAAGTGATAA+TGG + chr1_4:61071926-61071945 None:intergenic 25.0%
! AAAGGGAAGGTTATATTTAT+AGG + chr1_4:61071956-61071975 None:intergenic 25.0%
! GCATGTATCTTAGTTATAAT+TGG - chr1_4:61071990-61072009 Msa0175200:intron 25.0%
!!! AACTAAAAGCCTTATTTCTT+TGG - chr1_4:61072063-61072082 Msa0175200:intron 25.0%
! TATAGTTCTTCATTACAGTT+TGG + chr1_4:61072658-61072677 None:intergenic 25.0%
!! TATGGCACTTTTAATAAACA+TGG + chr1_4:61073031-61073050 None:intergenic 25.0%
!!! ATGTTTATTAAAAGTGCCAT+AGG - chr1_4:61073030-61073049 Msa0175200:intron 25.0%
!! TTTGGTTTCTATAAAACCTA+TGG + chr1_4:61073049-61073068 None:intergenic 25.0%
! ATCTAGAGATTTGAATTCAT+TGG + chr1_4:61073212-61073231 None:intergenic 25.0%
! TCAGTTTCATTTATACAATG+TGG + chr1_4:61073388-61073407 None:intergenic 25.0%
! ATTTGTTTCAGATATCAGAT+TGG + chr1_4:61074005-61074024 None:intergenic 25.0%
!! TCTGATATCTGAAACAAATA+AGG - chr1_4:61074006-61074025 Msa0175200:intron 25.0%
!! TATCTGAAACAAATAAGGAT+TGG - chr1_4:61074011-61074030 Msa0175200:intron 25.0%
!! ATCTGAAACAAATAAGGATT+GGG - chr1_4:61074012-61074031 Msa0175200:intron 25.0%
!! ACTTATCTGAGTTCATTTTA+CGG - chr1_4:61074583-61074602 Msa0175200:intron 25.0%
! GTAAAAGAGATAGTATGATT+AGG + chr1_4:61074918-61074937 None:intergenic 25.0%
!! GCAAGATTTTTATGATAAAG+AGG + chr1_4:61075253-61075272 None:intergenic 25.0%
!!! GTCAAAAATACCATTTTTAG+GGG + chr1_4:61075545-61075564 None:intergenic 25.0%
!!! GGTCAAAAATACCATTTTTA+GGG + chr1_4:61075546-61075565 None:intergenic 25.0%
!!! GTTTTGAATATGTGTTTTGA+GGG + chr1_4:61075949-61075968 None:intergenic 25.0%
!!! AGTTTTGAATATGTGTTTTG+AGG + chr1_4:61075950-61075969 None:intergenic 25.0%
! ATTAAAAGGAATTCTTGATG+AGG - chr1_4:61075974-61075993 Msa0175200:intron 25.0%
! TAAGAATGTTAAGGTTGAAT+GGG + chr1_4:61076017-61076036 None:intergenic 25.0%
! AAGAAGAGTTTGGAAAATTA+GGG + chr1_4:61076101-61076120 None:intergenic 25.0%
!! CAAGAGAAATGAGATATTTT+TGG - chr1_4:61076424-61076443 Msa0175200:intron 25.0%
!!! AGAGAAATGAGATATTTTTG+GGG - chr1_4:61076426-61076445 Msa0175200:intron 25.0%
! CAAGAAAGGGATATTTAATT+GGG + chr1_4:61076456-61076475 None:intergenic 25.0%
! CAATTAAATATCCCTTTCTT+GGG - chr1_4:61076455-61076474 Msa0175200:intron 25.0%
! AAATTCAAGGAAAGTAAGTA+TGG + chr1_4:61076570-61076589 None:intergenic 25.0%
! GAAGTGATAAACATAACATT+TGG + chr1_4:61076656-61076675 None:intergenic 25.0%
!! GTTTTCATTTTCGTATTACA+AGG - chr1_4:61077283-61077302 Msa0175200:intron 25.0%
!!! GATTATAATGTTGATGATAC+TGG - chr1_4:61077360-61077379 Msa0175200:intron 25.0%
!! TATATTTTCATGTATTGCAG+AGG - chr1_4:61077489-61077508 Msa0175200:CDS 25.0%
! TGAATTCTAAGCTATCTATA+TGG - chr1_4:61077516-61077535 Msa0175200:intron 25.0%
!! GTAGATGAATAAGTACATTT+TGG - chr1_4:61077683-61077702 Msa0175200:CDS 25.0%
! GCTTATTGAGAAGTTAAATA+AGG - chr1_4:61077710-61077729 Msa0175200:intron 25.0%
! GAAGTTAAATAAGGTAATCT+TGG - chr1_4:61077719-61077738 Msa0175200:intron 25.0%
!!! GATGCAGGGTTTTTTATTTA+TGG + chr1_4:61069205-61069224 None:intergenic 30.0%
!! GTAATAGGAAATTAGGTTGA+CGG + chr1_4:61069319-61069338 None:intergenic 30.0%
AACTCACGTAATAGGAAATT+AGG + chr1_4:61069326-61069345 None:intergenic 30.0%
AGAATTCAAACTCACGTAAT+AGG + chr1_4:61069334-61069353 None:intergenic 30.0%
TATGAGACGGTTATGTAAAT+TGG - chr1_4:61069621-61069640 Msa0175200:CDS 30.0%
CAATGACATTGGACAAATTT+AGG - chr1_4:61069807-61069826 Msa0175200:intron 30.0%
! CCAGTATACTTGTTAAGTAA+GGG + chr1_4:61069899-61069918 None:intergenic 30.0%
! AATAATGGAATGGTCTTTGT+GGG - chr1_4:61070062-61070081 Msa0175200:intron 30.0%
ATATGAAATCACCTTCTTCT+GGG + chr1_4:61070221-61070240 None:intergenic 30.0%
GTTATTCAAATTTGAAGAGC+AGG - chr1_4:61070294-61070313 Msa0175200:intron 30.0%
ATAGCAAAACCATATGTACA+TGG + chr1_4:61070368-61070387 None:intergenic 30.0%
TAGTCTAGTCTATACTATCA+TGG - chr1_4:61070390-61070409 Msa0175200:intron 30.0%
AGTCTAGTCTATACTATCAT+GGG - chr1_4:61070391-61070410 Msa0175200:intron 30.0%
ATATTATCCATGTTATGAGG+TGG - chr1_4:61070414-61070433 Msa0175200:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr1_4:61070697-61070716 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr1_4:61070698-61070717 Msa0175200:intron 30.0%
TTAAGGAATCAAAAAAGGAC+TGG + chr1_4:61070924-61070943 None:intergenic 30.0%
AGTTAAGGAATTGAGAGATA+AGG + chr1_4:61071306-61071325 None:intergenic 30.0%
ATAACGTATAACACCATACT+TGG + chr1_4:61071377-61071396 None:intergenic 30.0%
!! AAAAAATGGTGTTGATGTAC+AGG + chr1_4:61071456-61071475 None:intergenic 30.0%
CGCCTGTAATAACAAAAAAA+TGG + chr1_4:61071470-61071489 None:intergenic 30.0%
GCTCATACAATTAACAACAT+TGG + chr1_4:61071539-61071558 None:intergenic 30.0%
! TCTTGTTTGATTTACGTTGT+TGG - chr1_4:61071685-61071704 Msa0175200:intron 30.0%
! CTTGTTTGATTTACGTTGTT+GGG - chr1_4:61071686-61071705 Msa0175200:intron 30.0%
! GTTTTGTAAGTTAGTTAGCT+AGG - chr1_4:61071842-61071861 Msa0175200:intron 30.0%
AAGTTAGTTAGCTAGGTTTA+AGG - chr1_4:61071849-61071868 Msa0175200:intron 30.0%
! ATATAACCTTCCCTTTGAAA+AGG - chr1_4:61071960-61071979 Msa0175200:intron 30.0%
AGTTGGATTCCAAAGAAATA+AGG + chr1_4:61072075-61072094 None:intergenic 30.0%
GGAAGACAGTAAAAGAAAAA+AGG - chr1_4:61072110-61072129 Msa0175200:intron 30.0%
AGACAGTAAAAGAAAAAAGG+AGG - chr1_4:61072113-61072132 Msa0175200:intron 30.0%
AAATTAACACATCATCGTAG+AGG + chr1_4:61072241-61072260 None:intergenic 30.0%
! TCTTTTCACAAGTACAAGAA+TGG + chr1_4:61072266-61072285 None:intergenic 30.0%
ATATATATACACGTCCAAAC+TGG - chr1_4:61072384-61072403 Msa0175200:intron 30.0%
! ATCACTAAATTTTGCCAGTT+TGG + chr1_4:61072401-61072420 None:intergenic 30.0%
TTTCTTGAGGATTTGTAACA+TGG + chr1_4:61072490-61072509 None:intergenic 30.0%
TCAAGCTAATGTATTTCTTG+AGG + chr1_4:61072503-61072522 None:intergenic 30.0%
AGACATTGTCATGTTACTAT+TGG + chr1_4:61072585-61072604 None:intergenic 30.0%
!! GGCTTTGATTTAATTTGTGT+TGG + chr1_4:61073002-61073021 None:intergenic 30.0%
! TTTTAATAAACATGGTTGGC+TGG + chr1_4:61073023-61073042 None:intergenic 30.0%
! GCACTTTTAATAAACATGGT+TGG + chr1_4:61073027-61073046 None:intergenic 30.0%
TAAATTATTTCCATCCCCAA+TGG - chr1_4:61073110-61073129 Msa0175200:intron 30.0%
TTTCACTCAGTAAATGCTAT+CGG - chr1_4:61073336-61073355 Msa0175200:intron 30.0%
!!! CCACCAATTTTTTCTCAAAA+CGG + chr1_4:61073590-61073609 None:intergenic 30.0%
!! CCATGTTTCATATTTTGAGA+CGG + chr1_4:61073632-61073651 None:intergenic 30.0%
GAATGCTTATGTCATATTTG+AGG + chr1_4:61073706-61073725 None:intergenic 30.0%
ATGACATAAGCATTCAATAG+TGG - chr1_4:61073711-61073730 Msa0175200:intron 30.0%
TTTCTAGATACGTCTAGTAT+GGG + chr1_4:61073770-61073789 None:intergenic 30.0%
! TTTTATATTCCTTCCAAGGT+TGG + chr1_4:61074748-61074767 None:intergenic 30.0%
! TGTCTTTTATATTCCTTCCA+AGG + chr1_4:61074752-61074771 None:intergenic 30.0%
!! TTAGTCTTATGCATGTATGA+AGG - chr1_4:61074887-61074906 Msa0175200:CDS 30.0%
! TCATACTATCTCTTTTACCT+CGG - chr1_4:61074920-61074939 Msa0175200:intron 30.0%
AGCTTAAGTTTACCTCTAAT+GGG + chr1_4:61074959-61074978 None:intergenic 30.0%
AAGCTTAAGTTTACCTCTAA+TGG + chr1_4:61074960-61074979 None:intergenic 30.0%
TGCTTATCTTACTTTGTGAA+TGG - chr1_4:61074980-61074999 Msa0175200:intron 30.0%
ATTATGCTTGATTAGATGCA+AGG + chr1_4:61075078-61075097 None:intergenic 30.0%
AGCAAGTTATCCTTAAGAAA+GGG + chr1_4:61075172-61075191 None:intergenic 30.0%
TAGCAAGTTATCCTTAAGAA+AGG + chr1_4:61075173-61075192 None:intergenic 30.0%
GAGAGATCATATTATGAATC+GGG + chr1_4:61075196-61075215 None:intergenic 30.0%
CGAGAGATCATATTATGAAT+CGG + chr1_4:61075197-61075216 None:intergenic 30.0%
AAGTATTATGCAAGTTTGTG+AGG + chr1_4:61075229-61075248 None:intergenic 30.0%
GCTTAGATTGATCATCATTT+AGG - chr1_4:61075271-61075290 Msa0175200:intron 30.0%
AAAAAGATTGCTCAAAGATC+CGG - chr1_4:61075320-61075339 Msa0175200:intron 30.0%
!! GGGTCAAAAATACCATTTTT+AGG + chr1_4:61075547-61075566 None:intergenic 30.0%
ATATAACACTTAGAGACACT+TGG + chr1_4:61075582-61075601 None:intergenic 30.0%
CTAAGTGTTATATGACTCTT+AGG - chr1_4:61075589-61075608 Msa0175200:intron 30.0%
GTAAGAATGTTAAGGTTGAA+TGG + chr1_4:61076018-61076037 None:intergenic 30.0%
ATTCTAAATGGTACAAGGAA+TGG + chr1_4:61076057-61076076 None:intergenic 30.0%
! TGAAGAAGATGGATTCTAAA+TGG + chr1_4:61076069-61076088 None:intergenic 30.0%
GAAGAAGAGTTTGGAAAATT+AGG + chr1_4:61076102-61076121 None:intergenic 30.0%
CTAAGAAGAGATTAAAGTTG+GGG + chr1_4:61076219-61076238 None:intergenic 30.0%
CCTAAGAAGAGATTAAAGTT+GGG + chr1_4:61076220-61076239 None:intergenic 30.0%
ACCTAAGAAGAGATTAAAGT+TGG + chr1_4:61076221-61076240 None:intergenic 30.0%
AACTTTAATCTCTTCTTAGG+TGG - chr1_4:61076220-61076239 Msa0175200:intron 30.0%
!!! ATGGAAGTTGGTTTTGTTTT+GGG + chr1_4:61076258-61076277 None:intergenic 30.0%
!!! TATGGAAGTTGGTTTTGTTT+TGG + chr1_4:61076259-61076278 None:intergenic 30.0%
! TTCTAGATTCTTGTTTCTCT+TGG + chr1_4:61076292-61076311 None:intergenic 30.0%
CCAAGAAAGGGATATTTAAT+TGG + chr1_4:61076457-61076476 None:intergenic 30.0%
CCAATTAAATATCCCTTTCT+TGG - chr1_4:61076454-61076473 Msa0175200:intron 30.0%
! TTTGGTAATTTCCCAAGAAA+GGG + chr1_4:61076469-61076488 None:intergenic 30.0%
TTTCCTTGAATTTAATCCTC+TGG - chr1_4:61076577-61076596 Msa0175200:intron 30.0%
GATAAAATAACGATACTGAC+AGG - chr1_4:61076611-61076630 Msa0175200:intron 30.0%
ATGTTATGTTTATCACTTCG+AGG - chr1_4:61076657-61076676 Msa0175200:intron 30.0%
TGTTATGTTTATCACTTCGA+GGG - chr1_4:61076658-61076677 Msa0175200:intron 30.0%
TTCAGACTGTTAGTATTTCT+TGG - chr1_4:61076716-61076735 Msa0175200:intron 30.0%
AGAGAAATTGTCTCTTATGA+TGG + chr1_4:61076745-61076764 None:intergenic 30.0%
TTCAGACTGTTAGTATTTCT+TGG - chr1_4:61076716-61076735 Msa0175200:intron 30.0%
AGAGAAATTGTCTCTTATGA+TGG + chr1_4:61076745-61076764 None:intergenic 30.0%
! TGATTTCTTTTCCTTCACAT+GGG + chr1_4:61076966-61076985 None:intergenic 30.0%
! ATGATTTCTTTTCCTTCACA+TGG + chr1_4:61076967-61076986 None:intergenic 30.0%
ATTACATTGAATGCTGAGAT+AGG + chr1_4:61077083-61077102 None:intergenic 30.0%
TTAGAAATAAGGGAGTAATG+TGG - chr1_4:61077122-61077141 Msa0175200:CDS 30.0%
TAGAAATAAGGGAGTAATGT+GGG - chr1_4:61077123-61077142 Msa0175200:CDS 30.0%
ACACTCAACAAAAAAGAAGA+GGG + chr1_4:61077219-61077238 None:intergenic 30.0%
AGCAATTGAATGCTTCATAT+GGG + chr1_4:61077256-61077275 None:intergenic 30.0%
TAGCAATTGAATGCTTCATA+TGG + chr1_4:61077257-61077276 None:intergenic 30.0%
AGAATTACGAAGCTGTAATT+TGG + chr1_4:61077445-61077464 None:intergenic 30.0%
TCTACTCAATCAACTACATA+AGG + chr1_4:61077668-61077687 None:intergenic 30.0%
!! ATCTTGGGTTAATTTGTACT+TGG - chr1_4:61077735-61077754 Msa0175200:intron 30.0%
!! TCTTGGGTTAATTTGTACTT+GGG - chr1_4:61077736-61077755 Msa0175200:intron 30.0%
AAGATATTATCATCAGCAAG+AGG + chr1_4:61077763-61077782 None:intergenic 30.0%
!! TGTTTGCTGTTTAATGCTAC+AGG - chr1_4:61069555-61069574 Msa0175200:three_prime_UTR 35.0%
TAAAGTGGTGACAATGACAT+TGG - chr1_4:61069796-61069815 Msa0175200:intron 35.0%
GCAGATATGTAGGACAAATA+CGG + chr1_4:61069871-61069890 None:intergenic 35.0%
! GTATACTTGTTAAGTAAGGG+AGG + chr1_4:61069896-61069915 None:intergenic 35.0%
CCCTTACTTAACAAGTATAC+TGG - chr1_4:61069896-61069915 Msa0175200:intron 35.0%
! GCCAGTATACTTGTTAAGTA+AGG + chr1_4:61069900-61069919 None:intergenic 35.0%
CGACGAATTTATTAAGGAGT+TGG - chr1_4:61070028-61070047 Msa0175200:intron 35.0%
! TTTATTAAGGAGTTGGTTCC+AGG - chr1_4:61070035-61070054 Msa0175200:intron 35.0%
TTGGTTCCAGGTATGAATAA+TGG - chr1_4:61070047-61070066 Msa0175200:intron 35.0%
! TCCAGGTATGAATAATGGAA+TGG - chr1_4:61070052-61070071 Msa0175200:intron 35.0%
ACCATTCCATTATTCATACC+TGG + chr1_4:61070056-61070075 None:intergenic 35.0%
! GAATAATGGAATGGTCTTTG+TGG - chr1_4:61070061-61070080 Msa0175200:intron 35.0%
GGCAATGGTTATATTTCTTG+TGG - chr1_4:61070083-61070102 Msa0175200:intron 35.0%
! TCTTTATGCATTTGAGTTCC+TGG - chr1_4:61070123-61070142 Msa0175200:intron 35.0%
CATATGAAATCACCTTCTTC+TGG + chr1_4:61070222-61070241 None:intergenic 35.0%
! TTGAAGAGCAGGATCTATTT+TGG - chr1_4:61070305-61070324 Msa0175200:intron 35.0%
GGGATATTATCCATGTTATG+AGG - chr1_4:61070411-61070430 Msa0175200:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr1_4:61070463-61070482 None:intergenic 35.0%
! AATTGGAGGGTACAATTGAA+AGG + chr1_4:61070550-61070569 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr1_4:61070563-61070582 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr1_4:61070567-61070586 None:intergenic 35.0%
TACTGATCAAGATGTTTGTG+TGG - chr1_4:61070777-61070796 Msa0175200:intron 35.0%
AAGGAAAGAATTGTAGGCAT+AGG + chr1_4:61070864-61070883 None:intergenic 35.0%
TGTGTTACGAGATATGGATA+TGG - chr1_4:61070973-61070992 Msa0175200:intron 35.0%
! AGTTAGTATTTTACTGGGCT+AGG - chr1_4:61071263-61071282 Msa0175200:intron 35.0%
! GTTAGTATTTTACTGGGCTA+GGG - chr1_4:61071264-61071283 Msa0175200:intron 35.0%
TAAGGAATTGAGAGATAAGG+AGG + chr1_4:61071303-61071322 None:intergenic 35.0%
! TGATTCTTAGATTGGTGGTT+TGG + chr1_4:61071336-61071355 None:intergenic 35.0%
! GATCTGGTTGATTCTTAGAT+TGG + chr1_4:61071344-61071363 None:intergenic 35.0%
! GCTGTCGAAGTATTAAACTA+AGG + chr1_4:61071407-61071426 None:intergenic 35.0%
GAGACAATAATAAAGGGAAC+AGG + chr1_4:61071496-61071515 None:intergenic 35.0%
AGTGGGGAGACAATAATAAA+GGG + chr1_4:61071502-61071521 None:intergenic 35.0%
TGGTGATAAGTGATAACAGT+GGG + chr1_4:61071519-61071538 None:intergenic 35.0%
! TTGGTGATAAGTGATAACAG+TGG + chr1_4:61071520-61071539 None:intergenic 35.0%
ATCCTAACAATTTCCCCTAA+AGG + chr1_4:61071758-61071777 None:intergenic 35.0%
!! CTGTTATAGGTTTGTTGCTA+TGG - chr1_4:61071892-61071911 Msa0175200:intron 35.0%
! AAAGATCCTTTTCAAAGGGA+AGG + chr1_4:61071969-61071988 None:intergenic 35.0%
! TTCCCTTTGAAAAGGATCTT+TGG - chr1_4:61071968-61071987 Msa0175200:intron 35.0%
! TGCCAAAGATCCTTTTCAAA+GGG + chr1_4:61071973-61071992 None:intergenic 35.0%
! ATGCCAAAGATCCTTTTCAA+AGG + chr1_4:61071974-61071993 None:intergenic 35.0%
!! TTTCTTTGGAATCCAACTCT+TGG - chr1_4:61072077-61072096 Msa0175200:intron 35.0%
!! TTCTTTGGAATCCAACTCTT+GGG - chr1_4:61072078-61072097 Msa0175200:intron 35.0%
TGAAGAAAGTGAAGATGAAG+TGG - chr1_4:61072143-61072162 Msa0175200:intron 35.0%
AGATGAAGTGGAAAATGAAG+AGG - chr1_4:61072155-61072174 Msa0175200:intron 35.0%
GATGAAGTGGAAAATGAAGA+GGG - chr1_4:61072156-61072175 Msa0175200:intron 35.0%
ACCATCTTGGAAATCATCTT+CGG + chr1_4:61072190-61072209 None:intergenic 35.0%
CCTGATTATAATCACCATCT+TGG + chr1_4:61072203-61072222 None:intergenic 35.0%
CCAAGATGGTGATTATAATC+AGG - chr1_4:61072200-61072219 Msa0175200:intron 35.0%
GATGGTGATTATAATCAGGT+TGG - chr1_4:61072204-61072223 Msa0175200:intron 35.0%
ATGAGTTCCACAACTACATA+AGG - chr1_4:61072859-61072878 Msa0175200:intron 35.0%
TAGACTTCCTTATGTAGTTG+TGG + chr1_4:61072869-61072888 None:intergenic 35.0%
AAGAAAACATGAGTCAGACT+AGG - chr1_4:61072950-61072969 Msa0175200:intron 35.0%
! ATTTTCATGTGACATGCACA+TGG + chr1_4:61073072-61073091 None:intergenic 35.0%
TCTCTAGATTGCAACTTTGA+AGG - chr1_4:61073223-61073242 Msa0175200:intron 35.0%
! GGTAGAGCTTGAAATTTGTT+AGG + chr1_4:61073286-61073305 None:intergenic 35.0%
TTACTGAGTGAAATTTGAGC+AGG + chr1_4:61073329-61073348 None:intergenic 35.0%
AATTCTCTACTGTGTGTACA+GGG + chr1_4:61073451-61073470 None:intergenic 35.0%
!! TTTTGATTCAGAGAACCCAA+TGG + chr1_4:61073492-61073511 None:intergenic 35.0%
GTACTTGCGACATATTGTTT+GGG + chr1_4:61073535-61073554 None:intergenic 35.0%
!! AGTTTTAGCAAAACCACAGT+TGG - chr1_4:61073563-61073582 Msa0175200:intron 35.0%
!!! GGTCCGTTTTGAGAAAAAAT+TGG - chr1_4:61073584-61073603 Msa0175200:intron 35.0%
!!! CCGTTTTGAGAAAAAATTGG+TGG - chr1_4:61073587-61073606 Msa0175200:intron 35.0%
CCGTCTCAAAATATGAAACA+TGG - chr1_4:61073629-61073648 Msa0175200:intron 35.0%
ATATGAAACATGGTCCTCTA+CGG - chr1_4:61073639-61073658 Msa0175200:intron 35.0%
AATAGTGGCATGAAAGTAGA+CGG - chr1_4:61073726-61073745 Msa0175200:intron 35.0%
CTTTCTAGATACGTCTAGTA+TGG + chr1_4:61073771-61073790 None:intergenic 35.0%
CATGAAGATTATGGATCTCA+AGG + chr1_4:61073929-61073948 None:intergenic 35.0%
TACCTATAGCCTAGGATTTA+GGG + chr1_4:61074064-61074083 None:intergenic 35.0%
TTACCTATAGCCTAGGATTT+AGG + chr1_4:61074065-61074084 None:intergenic 35.0%
TAGATAGTATCTTGGCATTG+CGG + chr1_4:61074265-61074284 None:intergenic 35.0%
TTGATGCGTAGATAGTATCT+TGG + chr1_4:61074273-61074292 None:intergenic 35.0%
AAGATACTATCTACGCATCA+AGG - chr1_4:61074272-61074291 Msa0175200:intron 35.0%
GATATAACGAAGACGATCAT+AGG + chr1_4:61074349-61074368 None:intergenic 35.0%
!! CTATTGCAAAGCATTTTCAC+CGG + chr1_4:61074652-61074671 None:intergenic 35.0%
GATATAAAAGGTTCTCCAAG+GGG + chr1_4:61074726-61074745 None:intergenic 35.0%
GGATATAAAAGGTTCTCCAA+GGG + chr1_4:61074727-61074746 None:intergenic 35.0%
TGGATATAAAAGGTTCTCCA+AGG + chr1_4:61074728-61074747 None:intergenic 35.0%
! GAACCTTTTATATCCAACCT+TGG - chr1_4:61074732-61074751 Msa0175200:intron 35.0%
CTTCCAAGGTTGGATATAAA+AGG + chr1_4:61074738-61074757 None:intergenic 35.0%
! CTTTTATATCCAACCTTGGA+AGG - chr1_4:61074736-61074755 Msa0175200:intron 35.0%
! CACTTTAACTTAGTGAGATG+CGG - chr1_4:61074775-61074794 Msa0175200:intron 35.0%
!! TCTAGTTCTTCCCTTTCTTA+AGG - chr1_4:61075159-61075178 Msa0175200:intron 35.0%
! TTGATCATCATTTAGGACCT+TGG - chr1_4:61075278-61075297 Msa0175200:intron 35.0%
! TTGCTGAGTTCATGTTTTAC+AGG + chr1_4:61075626-61075645 None:intergenic 35.0%
TGGCATAAACATAATCCCAA+AGG - chr1_4:61075739-61075758 Msa0175200:intron 35.0%
GGCATAAACATAATCCCAAA+GGG - chr1_4:61075740-61075759 Msa0175200:intron 35.0%
ATAAACATAATCCCAAAGGG+TGG - chr1_4:61075743-61075762 Msa0175200:intron 35.0%
TAAACATAATCCCAAAGGGT+GGG - chr1_4:61075744-61075763 Msa0175200:intron 35.0%
AGATAAATTTCCCACCCTTT+GGG + chr1_4:61075757-61075776 None:intergenic 35.0%
TAGATAAATTTCCCACCCTT+TGG + chr1_4:61075758-61075777 None:intergenic 35.0%
AAGGGTGGGAAATTTATCTA+TGG - chr1_4:61075758-61075777 Msa0175200:intron 35.0%
! GTTGCTTCAAGTTTGTGATT+AGG + chr1_4:61075790-61075809 None:intergenic 35.0%
AAAGGGATGATGAGTTAGAA+TGG + chr1_4:61075877-61075896 None:intergenic 35.0%
!!! ATGTGTTTTGAGGGTAATGT+TGG + chr1_4:61075940-61075959 None:intergenic 35.0%
TGAGCAAGGTAAGAATGTTA+AGG + chr1_4:61076026-61076045 None:intergenic 35.0%
! GATGGATTCTAAATGGTACA+AGG + chr1_4:61076062-61076081 None:intergenic 35.0%
GGTTTGATGTATGAAGAAGA+TGG + chr1_4:61076080-61076099 None:intergenic 35.0%
TTTCCAAACTCTTCTTCAAG+AGG - chr1_4:61076105-61076124 Msa0175200:intron 35.0%
TCACTAGAGATTAAGGAAGT+GGG + chr1_4:61076157-61076176 None:intergenic 35.0%
ATCACTAGAGATTAAGGAAG+TGG + chr1_4:61076158-61076177 None:intergenic 35.0%
TTAAAGTTGGGGTTGTTTGA+TGG + chr1_4:61076208-61076227 None:intergenic 35.0%
CCCAACTTTAATCTCTTCTT+AGG - chr1_4:61076217-61076236 Msa0175200:intron 35.0%
GTCTCATAAGTTATGGAAGT+TGG + chr1_4:61076270-61076289 None:intergenic 35.0%
TCTCTTGGTCTCATAAGTTA+TGG + chr1_4:61076277-61076296 None:intergenic 35.0%
CAAGAATCTAGAAGTTACCA+TGG - chr1_4:61076299-61076318 Msa0175200:intron 35.0%
AATCTAGAAGTTACCATGGA+AGG - chr1_4:61076303-61076322 Msa0175200:intron 35.0%
TACCATGGAAGGAAAAAGTT+TGG - chr1_4:61076314-61076333 Msa0175200:intron 35.0%
!! TTCCAAACTTTTTCCTTCCA+TGG + chr1_4:61076319-61076338 None:intergenic 35.0%
TGGAAGGAAAAAGTTTGGAA+AGG - chr1_4:61076319-61076338 Msa0175200:intron 35.0%
GGAAAAAGTTTGGAAAGGAT+TGG - chr1_4:61076324-61076343 Msa0175200:intron 35.0%
! TCTTGTTCTTTTCTCTCTCT+TGG + chr1_4:61076409-61076428 None:intergenic 35.0%
! GTTTGGTAATTTCCCAAGAA+AGG + chr1_4:61076470-61076489 None:intergenic 35.0%
ATATAACACGCTAAAGGCAA+GGG + chr1_4:61076495-61076514 None:intergenic 35.0%
AATATAACACGCTAAAGGCA+AGG + chr1_4:61076496-61076515 None:intergenic 35.0%
AGACGAATATAACACGCTAA+AGG + chr1_4:61076501-61076520 None:intergenic 35.0%
AAAATAACGATACTGACAGG+CGG - chr1_4:61076614-61076633 Msa0175200:intron 35.0%
! CAAAGAAAGCATAGCTATAC+AGG + chr1_4:61076876-61076895 None:intergenic 35.0%
AGCGTAGACTATATTACACT+TGG - chr1_4:61077005-61077024 Msa0175200:intron 35.0%
!! AGGTTTGTTATGTGAGTCAA+AGG + chr1_4:61077063-61077082 None:intergenic 35.0%
AGAAATAAGGGAGTAATGTG+GGG - chr1_4:61077124-61077143 Msa0175200:CDS 35.0%
CACACTCAACAAAAAAGAAG+AGG + chr1_4:61077220-61077239 None:intergenic 35.0%
ACCAGTAAAGTGATAATACC+AGG + chr1_4:61077387-61077406 None:intergenic 35.0%
! AGCTGTAATTTGGAATACGA+TGG + chr1_4:61077435-61077454 None:intergenic 35.0%
ATGATTGTTTACTCATCCTG+TGG - chr1_4:61077542-61077561 Msa0175200:intron 35.0%
TGGATGCTTCTATATTAGCA+TGG - chr1_4:61077562-61077581 Msa0175200:intron 35.0%
! ATTGCTTCAAGGCTTTTACT+TGG - chr1_4:61077588-61077607 Msa0175200:intron 35.0%
CTTATTTCATCATGCATCCT+AGG - chr1_4:61077780-61077799 Msa0175200:intron 35.0%
AGATACCTGAAGAAAACGGT+GGG + chr1_4:61069294-61069313 None:intergenic 40.0%
GGAGAGATACCTGAAGAAAA+CGG + chr1_4:61069298-61069317 None:intergenic 40.0%
TCGAATTTCAGCGTCGTAAA+TGG - chr1_4:61069359-61069378 Msa0175200:three_prime_UTR 40.0%
AAACAACAAATGGGACTGGA+CGG + chr1_4:61069437-61069456 None:intergenic 40.0%
GGAAAAACAACAAATGGGAC+TGG + chr1_4:61069441-61069460 None:intergenic 40.0%
CCTCGGGAAAAACAACAAAT+GGG + chr1_4:61069446-61069465 None:intergenic 40.0%
ACCTCGGGAAAAACAACAAA+TGG + chr1_4:61069447-61069466 None:intergenic 40.0%
AAACAGATACCGACACATGT+CGG + chr1_4:61069540-61069559 None:intergenic 40.0%
AATTTGCCTGATGCTAAACC+CGG - chr1_4:61069583-61069602 Msa0175200:three_prime_UTR 40.0%
AAGTGGATGCTTCTATGAGA+CGG - chr1_4:61069608-61069627 Msa0175200:exon 40.0%
! CAGATCTGCTCCTTATTTCT+TGG - chr1_4:61069666-61069685 Msa0175200:CDS 40.0%
! ATCTGCTCCTTATTTCTTGG+AGG - chr1_4:61069669-61069688 Msa0175200:CDS 40.0%
! TCCTTATTTCTTGGAGGAGA+AGG - chr1_4:61069675-61069694 Msa0175200:CDS 40.0%
! TACTTGTTAAGTAAGGGAGG+AGG + chr1_4:61069893-61069912 None:intergenic 40.0%
! CTTTTCCTGCTTAACTGTCA+GGG - chr1_4:61069919-61069938 Msa0175200:intron 40.0%
TCGTCGTAAACTAAAACCTG+TGG + chr1_4:61070014-61070033 None:intergenic 40.0%
!!! GGTTCCATGTACGTTTTTTC+CGG + chr1_4:61070200-61070219 None:intergenic 40.0%
TCAATACTCAGTAGAATGGC+AGG + chr1_4:61070340-61070359 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr1_4:61070564-61070583 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_4:61070702-61070721 Msa0175200:intron 40.0%
TGAAACGGAGGGAGTAATAA+AGG - chr1_4:61070713-61070732 Msa0175200:intron 40.0%
GTTACGAGATATGGATATGG+TGG - chr1_4:61070976-61070995 Msa0175200:intron 40.0%
GAATTCTTTCAGCTCCTGTA+CGG - chr1_4:61071011-61071030 Msa0175200:intron 40.0%
AATTCTTTCAGCTCCTGTAC+GGG - chr1_4:61071012-61071031 Msa0175200:intron 40.0%
! TGGTTTGGATGGAGAAGTTA+AGG + chr1_4:61071321-61071340 None:intergenic 40.0%
! TCTTAGATTGGTGGTTTGGA+TGG + chr1_4:61071332-61071351 None:intergenic 40.0%
! CTGGTTGATTCTTAGATTGG+TGG + chr1_4:61071341-61071360 None:intergenic 40.0%
!! AAATGGTGTTGATGTACAGG+CGG + chr1_4:61071453-61071472 None:intergenic 40.0%
CAGTGGGGAGACAATAATAA+AGG + chr1_4:61071503-61071522 None:intergenic 40.0%
GGTGATAAGTGATAACAGTG+GGG + chr1_4:61071518-61071537 None:intergenic 40.0%
GTTTACTGTTCTAGCAGAGA+TGG + chr1_4:61071618-61071637 None:intergenic 40.0%
! TGGGTTACCTACATTTTGTC+CGG - chr1_4:61071705-61071724 Msa0175200:intron 40.0%
GATTTCACCGGACAAAATGT+AGG + chr1_4:61071715-61071734 None:intergenic 40.0%
TGACGATTCTTCCACCTTTA+GGG - chr1_4:61071741-61071760 Msa0175200:intron 40.0%
CTAACAATTTCCCCTAAAGG+TGG + chr1_4:61071755-61071774 None:intergenic 40.0%
! CACCTTTAGGGGAAATTGTT+AGG - chr1_4:61071753-61071772 Msa0175200:intron 40.0%
TCCGAAGATGATTTCCAAGA+TGG - chr1_4:61072186-61072205 Msa0175200:intron 40.0%
! TTTTCTGCTTCACTGTGATC+AGG + chr1_4:61072727-61072746 None:intergenic 40.0%
TGTAGTTGTGGAACTCATGT+GGG + chr1_4:61072857-61072876 None:intergenic 40.0%
ATGTAGTTGTGGAACTCATG+TGG + chr1_4:61072858-61072877 None:intergenic 40.0%
CAATTCTCTACTGTGTGTAC+AGG + chr1_4:61073452-61073471 None:intergenic 40.0%
TACACACAGTAGAGAATTGC+AGG - chr1_4:61073453-61073472 Msa0175200:intron 40.0%
! GGGATAACTCAATCTTTTCC+AGG + chr1_4:61073515-61073534 None:intergenic 40.0%
CGTACTTGCGACATATTGTT+TGG + chr1_4:61073536-61073555 None:intergenic 40.0%
ATAGTGGCATGAAAGTAGAC+GGG - chr1_4:61073727-61073746 Msa0175200:intron 40.0%
AGTATGCAATTGTACGAACG+CGG + chr1_4:61073875-61073894 None:intergenic 40.0%
ATCCATAATCTTCATGCTCC+AGG - chr1_4:61073933-61073952 Msa0175200:intron 40.0%
TACCTGGAGCATGAAGATTA+TGG + chr1_4:61073938-61073957 None:intergenic 40.0%
ATTGGACGCAAGATAGTAGT+CGG + chr1_4:61073987-61074006 None:intergenic 40.0%
ACCTATAGCCTAGGATTTAG+GGG + chr1_4:61074063-61074082 None:intergenic 40.0%
TTCTCATCTCACATGTGTCA+TGG - chr1_4:61074219-61074238 Msa0175200:intron 40.0%
GTCATGACACAACTCTAAAC+CGG - chr1_4:61074310-61074329 Msa0175200:intron 40.0%
AACTCTAAACCGGACGATTA+GGG - chr1_4:61074320-61074339 Msa0175200:intron 40.0%
!!! GCTAGAAAGAGTCACTTTTG+TGG + chr1_4:61074426-61074445 None:intergenic 40.0%
TGTGTTATGTCATAGAGCCT+TGG + chr1_4:61074504-61074523 None:intergenic 40.0%
!!! TTTTACGGATTAGTTCCGAG+TGG - chr1_4:61074598-61074617 Msa0175200:intron 40.0%
TAGTAAGGGATTAACTTCCG+GGG + chr1_4:61074629-61074648 None:intergenic 40.0%
GTAGTAAGGGATTAACTTCC+GGG + chr1_4:61074630-61074649 None:intergenic 40.0%
GGTAGTAAGGGATTAACTTC+CGG + chr1_4:61074631-61074650 None:intergenic 40.0%
GGAAGTTAATCCCTTACTAC+CGG - chr1_4:61074630-61074649 Msa0175200:intron 40.0%
! AGCATTTTCACCGGTAGTAA+GGG + chr1_4:61074643-61074662 None:intergenic 40.0%
! AAGCATTTTCACCGGTAGTA+AGG + chr1_4:61074644-61074663 None:intergenic 40.0%
CTTGAATTCCTTCCAAGGTT+GGG + chr1_4:61074843-61074862 None:intergenic 40.0%
TCTTGAATTCCTTCCAAGGT+TGG + chr1_4:61074844-61074863 None:intergenic 40.0%
TGTCTCTTGAATTCCTTCCA+AGG + chr1_4:61074848-61074867 None:intergenic 40.0%
AAGCAAGAACCATACGAGTA+TGG + chr1_4:61075029-61075048 None:intergenic 40.0%
AGTTCTCGATAACTATACCG+AGG - chr1_4:61075135-61075154 Msa0175200:intron 40.0%
TTATGCAAGTTTGTGAGGCA+TGG + chr1_4:61075224-61075243 None:intergenic 40.0%
! TCATTTAGGACCTTGGTTTG+AGG - chr1_4:61075285-61075304 Msa0175200:intron 40.0%
! CATTTAGGACCTTGGTTTGA+GGG - chr1_4:61075286-61075305 Msa0175200:intron 40.0%
! ATTTAGGACCTTGGTTTGAG+GGG - chr1_4:61075287-61075306 Msa0175200:intron 40.0%
AAGTTAAACCCCTCAAACCA+AGG + chr1_4:61075298-61075317 None:intergenic 40.0%
!! AATACCATTTTTAGGGGTCC+TGG + chr1_4:61075539-61075558 None:intergenic 40.0%
! ACTTAGAGACACTTGGTTTG+AGG + chr1_4:61075575-61075594 None:intergenic 40.0%
ATTCACAAGTCAAGCAAGCA+TGG - chr1_4:61075648-61075667 Msa0175200:intron 40.0%
AAGCAAGCATGGCATACAAA+TGG - chr1_4:61075659-61075678 Msa0175200:intron 40.0%
AGCAAGCATGGCATACAAAT+GGG - chr1_4:61075660-61075679 Msa0175200:intron 40.0%
!! GTTTTGGGCATGTTTGAGTT+TGG + chr1_4:61075821-61075840 None:intergenic 40.0%
! GGGAGCAAAACTAAGGTTTT+GGG + chr1_4:61075836-61075855 None:intergenic 40.0%
! AGGGAGCAAAACTAAGGTTT+TGG + chr1_4:61075837-61075856 None:intergenic 40.0%
AAGCAAAGGGAGCAAAACTA+AGG + chr1_4:61075843-61075862 None:intergenic 40.0%
GAGTTAGAATGGTATGAGCA+AGG + chr1_4:61075866-61075885 None:intergenic 40.0%
GTGTCTTGGATTGCAAGAAA+GGG + chr1_4:61075894-61075913 None:intergenic 40.0%
!!! GTATGGTTTTGAGCTTGAAG+AGG + chr1_4:61075916-61075935 None:intergenic 40.0%
TTGAGGGTAATGTTGGAGTA+TGG + chr1_4:61075933-61075952 None:intergenic 40.0%
GAATGGTTTCTACATGAGCA+AGG + chr1_4:61076040-61076059 None:intergenic 40.0%
TCTCCTCTTGAAGAAGAGTT+TGG + chr1_4:61076111-61076130 None:intergenic 40.0%
GTGCCAGAGGATTAAATTCA+AGG + chr1_4:61076583-61076602 None:intergenic 40.0%
AAATAACGATACTGACAGGC+GGG - chr1_4:61076615-61076634 Msa0175200:intron 40.0%
GTAGTTTGGGGACATGATAT+AGG - chr1_4:61077163-61077182 Msa0175200:intron 40.0%
GCCTGGTATTATCACTTTAC+TGG - chr1_4:61077383-61077402 Msa0175200:CDS 40.0%
GTATTACGTAGCAGTTAAGC+TGG + chr1_4:61077468-61077487 None:intergenic 40.0%
!! GCTAATATAGAAGCATCCAC+AGG + chr1_4:61077561-61077580 None:intergenic 40.0%
! TAGCATGGACTATTGCTTCA+AGG - chr1_4:61077577-61077596 Msa0175200:intron 40.0%
TCATCATGCATCCTAGGAAT+TGG - chr1_4:61077786-61077805 Msa0175200:five_prime_UTR 40.0%
CATCATGCATCCTAGGAATT+GGG - chr1_4:61077787-61077806 Msa0175200:five_prime_UTR 40.0%
AGAAACCAAACCCAATTCCT+AGG + chr1_4:61077800-61077819 None:intergenic 40.0%
TTTCCACATTTCCTGCAATC+TGG - chr1_4:61077827-61077846 Msa0175200:five_prime_UTR 40.0%
GAAAGAAGTTACCGTCGTGA+CGG - chr1_4:61069246-61069265 Msa0175200:three_prime_UTR 45.0%
AAAGAAGTTACCGTCGTGAC+GGG - chr1_4:61069247-61069266 Msa0175200:three_prime_UTR 45.0%
TGAAGAAAACGGTGGGATGA+AGG + chr1_4:61069287-61069306 None:intergenic 45.0%
! TTCATCCCACCGTTTTCTTC+AGG - chr1_4:61069286-61069305 Msa0175200:three_prime_UTR 45.0%
GAGATACCTGAAGAAAACGG+TGG + chr1_4:61069295-61069314 None:intergenic 45.0%
ATTTCAGCGTCGTAAATGGC+TGG - chr1_4:61069363-61069382 Msa0175200:three_prime_UTR 45.0%
!!! CCCATTTGTTGTTTTTCCCG+AGG - chr1_4:61069443-61069462 Msa0175200:three_prime_UTR 45.0%
!! ATAGAAGCATCCACTTCTCC+GGG + chr1_4:61069604-61069623 None:intergenic 45.0%
!! CATAGAAGCATCCACTTCTC+CGG + chr1_4:61069605-61069624 None:intergenic 45.0%
GCCTTCTCCTCCAAGAAATA+AGG + chr1_4:61069679-61069698 None:intergenic 45.0%
! GAGGAGAAGGCACAATTCAA+GGG - chr1_4:61069688-61069707 Msa0175200:CDS 45.0%
! GAAGGCACAATTCAAGGGTA+TGG - chr1_4:61069693-61069712 Msa0175200:CDS 45.0%
! GCTTTTCCTGCTTAACTGTC+AGG - chr1_4:61069918-61069937 Msa0175200:intron 45.0%
CAGAGAATCACGAGTAAAGC+TGG + chr1_4:61069991-61070010 None:intergenic 45.0%
CAGGTAAAACTATGCTGAGC+CGG - chr1_4:61070178-61070197 Msa0175200:intron 45.0%
TGAGCCGGAAAAAACGTACA+TGG - chr1_4:61070193-61070212 Msa0175200:intron 45.0%
CAGAGATCCACCTCATAACA+TGG + chr1_4:61070424-61070443 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_4:61070701-61070720 Msa0175200:intron 45.0%
GATCAAGATGTTTGTGTGGC+AGG - chr1_4:61070781-61070800 Msa0175200:intron 45.0%
TGTGGCAGGTCAGAAAAAAC+TGG - chr1_4:61070795-61070814 Msa0175200:intron 45.0%
TGATATAGAGAAGAGTCGCC+TGG - chr1_4:61070831-61070850 Msa0175200:intron 45.0%
GGAATTGAGAGATAAGGAGG+AGG + chr1_4:61071300-61071319 None:intergenic 45.0%
AATCAACCAGATCCAGTCTC+TGG - chr1_4:61071351-61071370 Msa0175200:intron 45.0%
TCGTCAGCAAAGGATTTCAC+CGG + chr1_4:61071727-61071746 None:intergenic 45.0%
CTGACGATTCTTCCACCTTT+AGG - chr1_4:61071740-61071759 Msa0175200:intron 45.0%
GACGATTCTTCCACCTTTAG+GGG - chr1_4:61071742-61071761 Msa0175200:intron 45.0%
CATCATCGTAGAGGATAGAG+TGG + chr1_4:61072232-61072251 None:intergenic 45.0%
CATGTGACATGCACATGGTT+TGG + chr1_4:61073067-61073086 None:intergenic 45.0%
GCGCTGTTCATGCTACAAAA+TGG - chr1_4:61073132-61073151 Msa0175200:intron 45.0%
GTAGAGCTTGAAACTTGAGC+AGG + chr1_4:61073307-61073326 None:intergenic 45.0%
ACAGTAGAGAATTGCAGGAG+TGG - chr1_4:61073458-61073477 Msa0175200:intron 45.0%
TGATTCAGAGAACCCAATGG+AGG + chr1_4:61073489-61073508 None:intergenic 45.0%
GGGTTCTCTGAATCAAAACC+TGG - chr1_4:61073494-61073513 Msa0175200:intron 45.0%
TTCTCAAAACGGACCAACTG+TGG + chr1_4:61073579-61073598 None:intergenic 45.0%
GGTCTATAGTCAATCCGTAG+AGG + chr1_4:61073656-61073675 None:intergenic 45.0%
TAGTGGCATGAAAGTAGACG+GGG - chr1_4:61073728-61073747 Msa0175200:intron 45.0%
GTATGCAATTGTACGAACGC+GGG + chr1_4:61073874-61073893 None:intergenic 45.0%
AGTGAGTTCCCCTAAATCCT+AGG - chr1_4:61074052-61074071 Msa0175200:intron 45.0%
TCCCCTAAATCCTAGGCTAT+AGG - chr1_4:61074059-61074078 Msa0175200:intron 45.0%
CTAGGCTATAGGTAACCTCA+GGG - chr1_4:61074070-61074089 Msa0175200:intron 45.0%
TAGGCTATAGGTAACCTCAG+GGG - chr1_4:61074071-61074090 Msa0175200:intron 45.0%
CAGGTTGTAAAGTAGACACG+TGG + chr1_4:61074110-61074129 None:intergenic 45.0%
GTGTCTACTTTACAACCTGC+CGG - chr1_4:61074111-61074130 Msa0175200:intron 45.0%
CCCACACACGTATAATCAAC+CGG + chr1_4:61074133-61074152 None:intergenic 45.0%
CCGGTTGATTATACGTGTGT+GGG - chr1_4:61074130-61074149 Msa0175200:intron 45.0%
CGGTTGATTATACGTGTGTG+GGG - chr1_4:61074131-61074150 Msa0175200:intron 45.0%
TTGGACGGTTGTGCATACTA+GGG - chr1_4:61074164-61074183 Msa0175200:intron 45.0%
TCATCTCACATGTGTCATGG+CGG - chr1_4:61074222-61074241 Msa0175200:intron 45.0%
ACATGTGTCATGGCGGTTAA+GGG - chr1_4:61074229-61074248 Msa0175200:intron 45.0%
CAACTCTAAACCGGACGATT+AGG - chr1_4:61074319-61074338 Msa0175200:intron 45.0%
CATAGGTTTCCCTAATCGTC+CGG + chr1_4:61074332-61074351 None:intergenic 45.0%
CTTCTTGACAGTCTATGCCA+AGG - chr1_4:61074484-61074503 Msa0175200:intron 45.0%
AATGCTTTGCAATAGCGCAC+CGG - chr1_4:61074657-61074676 Msa0175200:intron 45.0%
AAAGGTTCTCCAAGGGGAAT+GGG + chr1_4:61074720-61074739 None:intergenic 45.0%
AAAAGGTTCTCCAAGGGGAA+TGG + chr1_4:61074721-61074740 None:intergenic 45.0%
TCCTTGAACGATCCCATTAG+AGG - chr1_4:61074944-61074963 Msa0175200:intron 45.0%
ACCTCTAATGGGATCGTTCA+AGG + chr1_4:61074948-61074967 None:intergenic 45.0%
AAGAACCATACGAGTATGGC+AGG + chr1_4:61075025-61075044 None:intergenic 45.0%
AAAGGGAAGAACTAGAGCCT+CGG + chr1_4:61075155-61075174 None:intergenic 45.0%
GATTGCTCAAAGATCCGGAA+CGG - chr1_4:61075325-61075344 Msa0175200:intron 45.0%
!!! GATTCGGTGTTTTTCCGTTC+CGG + chr1_4:61075342-61075361 None:intergenic 45.0%
TTGCTCGTTTCAGGCAGATT+CGG + chr1_4:61075358-61075377 None:intergenic 45.0%
GCCTAGGCGAGTAAATTCAT+GGG - chr1_4:61075404-61075423 Msa0175200:intron 45.0%
CCTAGGCGAGTAAATTCATG+GGG - chr1_4:61075405-61075424 Msa0175200:intron 45.0%
CTAGGCGAGTAAATTCATGG+GGG - chr1_4:61075406-61075425 Msa0175200:intron 45.0%
! ACACTTGGTTTGAGGTTCTC+GGG + chr1_4:61075567-61075586 None:intergenic 45.0%
! GACACTTGGTTTGAGGTTCT+CGG + chr1_4:61075568-61075587 None:intergenic 45.0%
GCAAGCATGGCATACAAATG+GGG - chr1_4:61075661-61075680 Msa0175200:intron 45.0%
! GCATGTTTGAGTTTGGAGCT+TGG + chr1_4:61075814-61075833 None:intergenic 45.0%
GGTATGAGCAAGGAAGCAAA+GGG + chr1_4:61075856-61075875 None:intergenic 45.0%
TGGTATGAGCAAGGAAGCAA+AGG + chr1_4:61075857-61075876 None:intergenic 45.0%
GGTGTCTTGGATTGCAAGAA+AGG + chr1_4:61075895-61075914 None:intergenic 45.0%
!! TTGAGCTTGAAGAGGTGTCT+TGG + chr1_4:61075908-61075927 None:intergenic 45.0%
! TGGAAAGGATTGGTGTAGAG+AGG - chr1_4:61076334-61076353 Msa0175200:intron 45.0%
! AAAGGATTGGTGTAGAGAGG+AGG - chr1_4:61076337-61076356 Msa0175200:intron 45.0%
! AAGGATTGGTGTAGAGAGGA+GGG - chr1_4:61076338-61076357 Msa0175200:intron 45.0%
TTATCATTCGATCGTGCCAG+AGG + chr1_4:61076596-61076615 None:intergenic 45.0%
CATACTACTTGCCCATGTGA+AGG - chr1_4:61076952-61076971 Msa0175200:intron 45.0%
!! AATGTTGATGATACTGGGCC+TGG - chr1_4:61077366-61077385 Msa0175200:intron 45.0%
TGCATCCTAGGAATTGGGTT+TGG - chr1_4:61077792-61077811 Msa0175200:five_prime_UTR 45.0%
!! AACAAAAATTAAAAAAATAA+AGG + chr1_4:61070883-61070902 None:intergenic 5.0%
!! ATTATAAAATAAATGTAAAT+TGG - chr1_4:61071776-61071795 Msa0175200:intron 5.0%
TTCTTTCTGCTTGCGCTTGC+GGG + chr1_4:61069233-61069252 None:intergenic 50.0%
CTTCTTTCTGCTTGCGCTTG+CGG + chr1_4:61069234-61069253 None:intergenic 50.0%
ACCTTGTAGACTCTCGTGTC+TGG - chr1_4:61069511-61069530 Msa0175200:three_prime_UTR 50.0%
ACCAGACACGAGAGTCTACA+AGG + chr1_4:61069515-61069534 None:intergenic 50.0%
ACTTCTCCGGGTTTAGCATC+AGG + chr1_4:61069592-61069611 None:intergenic 50.0%
TGATGCTAAACCCGGAGAAG+TGG - chr1_4:61069591-61069610 Msa0175200:three_prime_UTR 50.0%
! GGAGGAGAAGGCACAATTCA+AGG - chr1_4:61069687-61069706 Msa0175200:CDS 50.0%
AAGGGAGGAGGCAGATATGT+AGG + chr1_4:61069881-61069900 None:intergenic 50.0%
TACTCGTGATTCTCTGCCAC+AGG - chr1_4:61069995-61070014 Msa0175200:intron 50.0%
GGAATGGTCTTTGTGGGCAA+TGG - chr1_4:61070068-61070087 Msa0175200:intron 50.0%
CGTACATGGAACCCAGAAGA+AGG - chr1_4:61070207-61070226 Msa0175200:intron 50.0%
GGCAGGTCAGAAAAAACTGG+CGG - chr1_4:61070798-61070817 Msa0175200:intron 50.0%
TCTAATCCCAAGTCCCGTAC+AGG + chr1_4:61071028-61071047 None:intergenic 50.0%
ATCCAGTCTCTGGCCAAGTA+TGG - chr1_4:61071361-61071380 Msa0175200:intron 50.0%
GGTGGAAGAATCGTCAGCAA+AGG + chr1_4:61071737-61071756 None:intergenic 50.0%
CCTGTTACGAACCCAAGAGT+TGG + chr1_4:61072092-61072111 None:intergenic 50.0%
CCAACTCTTGGGTTCGTAAC+AGG - chr1_4:61072089-61072108 Msa0175200:intron 50.0%
TAGCATGAACAGCGCCATTG+GGG + chr1_4:61073127-61073146 None:intergenic 50.0%
GTAGCATGAACAGCGCCATT+GGG + chr1_4:61073128-61073147 None:intergenic 50.0%
TGTAGCATGAACAGCGCCAT+TGG + chr1_4:61073129-61073148 None:intergenic 50.0%
AGGAGTGGAGAAACCTCCAT+TGG - chr1_4:61073473-61073492 Msa0175200:intron 50.0%
GGAGTGGAGAAACCTCCATT+GGG - chr1_4:61073474-61073493 Msa0175200:intron 50.0%
GACGCAAGATAGTAGTCGGA+TGG + chr1_4:61073983-61074002 None:intergenic 50.0%
CCTGAGGTTACCTATAGCCT+AGG + chr1_4:61074072-61074091 None:intergenic 50.0%
CCTAGGCTATAGGTAACCTC+AGG - chr1_4:61074069-61074088 Msa0175200:intron 50.0%
GTAACCTCAGGGGAAACCTA+CGG - chr1_4:61074081-61074100 Msa0175200:intron 50.0%
CACACGTATAATCAACCGGC+AGG + chr1_4:61074129-61074148 None:intergenic 50.0%
GCCGGTTGATTATACGTGTG+TGG - chr1_4:61074129-61074148 Msa0175200:intron 50.0%
! TGTGTGGGGACTTGCTTACT+TGG - chr1_4:61074145-61074164 Msa0175200:intron 50.0%
! TGGGGACTTGCTTACTTGGA+CGG - chr1_4:61074149-61074168 Msa0175200:intron 50.0%
CTTGGACGGTTGTGCATACT+AGG - chr1_4:61074163-61074182 Msa0175200:intron 50.0%
CACATGTGTCATGGCGGTTA+AGG - chr1_4:61074228-61074247 Msa0175200:intron 50.0%
CATGTGTCATGGCGGTTAAG+GGG - chr1_4:61074230-61074249 Msa0175200:intron 50.0%
AAGGTTCTCCAAGGGGAATG+GGG + chr1_4:61074719-61074738 None:intergenic 50.0%
GGGGAATGGTTAAGCCGAAA+GGG + chr1_4:61074803-61074822 None:intergenic 50.0%
AGGGGAATGGTTAAGCCGAA+AGG + chr1_4:61074804-61074823 None:intergenic 50.0%
TTCGGCTTAACCATTCCCCT+TGG - chr1_4:61074804-61074823 Msa0175200:intron 50.0%
TCGGCTTAACCATTCCCCTT+GGG - chr1_4:61074805-61074824 Msa0175200:intron 50.0%
CTTCCAAGGTTGGGTTCAAG+GGG + chr1_4:61074834-61074853 None:intergenic 50.0%
CCTTCCAAGGTTGGGTTCAA+GGG + chr1_4:61074835-61074854 None:intergenic 50.0%
TCCTTCCAAGGTTGGGTTCA+AGG + chr1_4:61074836-61074855 None:intergenic 50.0%
CACATCCTGCCATACTCGTA+TGG - chr1_4:61075017-61075036 Msa0175200:intron 50.0%
CGCCTAGGCGAGTAAATTCA+TGG - chr1_4:61075403-61075422 Msa0175200:intron 50.0%
CCCCATGAATTTACTCGCCT+AGG + chr1_4:61075408-61075427 None:intergenic 50.0%
CAGTCCAGGACCCCTAAAAA+TGG - chr1_4:61075532-61075551 Msa0175200:intron 50.0%
AGATCGATGGAGAGGAAGAG+AGG - chr1_4:61076361-61076380 Msa0175200:intron 50.0%
GATCGATGGAGAGGAAGAGA+GGG - chr1_4:61076362-61076381 Msa0175200:intron 50.0%
GTGCCAGATTGCAGGAAATG+TGG + chr1_4:61077833-61077852 None:intergenic 50.0%
TCCTGCAATCTGGCACTACT+TGG - chr1_4:61077837-61077856 Msa0175200:five_prime_UTR 50.0%
ACCAAGTAGTGCCAGATTGC+AGG + chr1_4:61077841-61077860 None:intergenic 50.0%
! TGGGATGAAGGTGTGCACCA+CGG + chr1_4:61069275-61069294 None:intergenic 55.0%
TCGTAAATGGCTGGCAGAGG+AGG - chr1_4:61069372-61069391 Msa0175200:three_prime_UTR 55.0%
TAAATGGCTGGCAGAGGAGG+AGG - chr1_4:61069375-61069394 Msa0175200:three_prime_UTR 55.0%
GTCTGGTGTCCGACATGTGT+CGG - chr1_4:61069528-61069547 Msa0175200:three_prime_UTR 55.0%
TTGCGCCCTGACAGTTAAGC+AGG + chr1_4:61069927-61069946 None:intergenic 55.0%
GTAGGCATAGGTGCTCTACC+AGG + chr1_4:61070852-61070871 None:intergenic 55.0%
TTCAGCTCCTGTACGGGACT+TGG - chr1_4:61071018-61071037 Msa0175200:intron 55.0%
TCAGCTCCTGTACGGGACTT+GGG - chr1_4:61071019-61071038 Msa0175200:intron 55.0%
ACTTGGCCAGAGACTGGATC+TGG + chr1_4:61071360-61071379 None:intergenic 55.0%
CACCATACTTGGCCAGAGAC+TGG + chr1_4:61071366-61071385 None:intergenic 55.0%
TGTCAATCGTAGCGTCGTGC+TGG + chr1_4:61071573-61071592 None:intergenic 55.0%
ATGAACAGCGCCATTGGGGA+TGG + chr1_4:61073123-61073142 None:intergenic 55.0%
AGCAAGAGCTCGTTCGTACC+TGG + chr1_4:61073954-61073973 None:intergenic 55.0%
AGTAGACACGTGGTGACCGT+AGG + chr1_4:61074100-61074119 None:intergenic 55.0%
AGTTCCGAGTGGAGTAACCC+CGG - chr1_4:61074609-61074628 Msa0175200:intron 55.0%
ACTTCCGGGGTTACTCCACT+CGG + chr1_4:61074616-61074635 None:intergenic 55.0%
GGGAATGGGGTAAGCCGTAA+GGG + chr1_4:61074706-61074725 None:intergenic 55.0%
AGTGAGATGCGGCTCCCTTT+CGG - chr1_4:61074786-61074805 Msa0175200:intron 55.0%
CGGCTTAACCATTCCCCTTG+GGG - chr1_4:61074806-61074825 Msa0175200:intron 55.0%
GAACCCCTTGAACCCAACCT+TGG - chr1_4:61074828-61074847 Msa0175200:intron 55.0%
CCCTTGAACCCAACCTTGGA+AGG - chr1_4:61074832-61074851 Msa0175200:intron 55.0%
TGGGATCGTTCAAGGATCCG+AGG + chr1_4:61074940-61074959 None:intergenic 55.0%
CTGAAACGAGCAAGCAGTGC+CGG - chr1_4:61075365-61075384 Msa0175200:intron 55.0%
AACACACCACTTGCTCGCCT+AGG - chr1_4:61075388-61075407 Msa0175200:intron 55.0%
GGCGAGTAAATTCATGGGGG+AGG - chr1_4:61075409-61075428 Msa0175200:intron 55.0%
TATTACTCGCCACAGCGAGC+TGG + chr1_4:61075491-61075510 None:intergenic 55.0%
TGGACTGTCCTAACTCGCCA+CGG + chr1_4:61075519-61075538 None:intergenic 55.0%
GTAGAGAGGAGGGAGATCGA+TGG - chr1_4:61076348-61076367 Msa0175200:intron 55.0%
CGCTAAAGGCAAGGGCAGTT+TGG + chr1_4:61076487-61076506 None:intergenic 55.0%
!! GCTTGCGGGTTAGGGATGCA+GGG + chr1_4:61069219-61069238 None:intergenic 60.0%
! CTGCTTGCGCTTGCGGGTTA+GGG + chr1_4:61069227-61069246 None:intergenic 60.0%
TCTGCTTGCGCTTGCGGGTT+AGG + chr1_4:61069228-61069247 None:intergenic 60.0%
GCGTCGTAAATGGCTGGCAG+AGG - chr1_4:61069369-61069388 Msa0175200:three_prime_UTR 60.0%
GGATTCCGTGGACGTGGAAG+AGG - chr1_4:61069402-61069421 Msa0175200:three_prime_UTR 60.0%
ATGCGCCTCTTCCACGTCCA+CGG + chr1_4:61069410-61069429 None:intergenic 60.0%
TGACAGCAGAGGTGGACAGG+TGG + chr1_4:61071429-61071448 None:intergenic 60.0%
GGTTGACAGCAGAGGTGGAC+AGG + chr1_4:61071432-61071451 None:intergenic 60.0%
GTACAGGCGGTTGACAGCAG+AGG + chr1_4:61071440-61071459 None:intergenic 60.0%
CAATCGTAGCGTCGTGCTGG+TGG + chr1_4:61071570-61071589 None:intergenic 60.0%
GTGACCGTAGGTTTCCCCTG+AGG + chr1_4:61074088-61074107 None:intergenic 60.0%
GGGGAATGGGGTAAGCCGTA+AGG + chr1_4:61074707-61074726 None:intergenic 60.0%
ACGGCTTACCCCATTCCCCT+TGG - chr1_4:61074708-61074727 Msa0175200:intron 60.0%
AAGGGGTTCCCCAAGGGGAA+TGG + chr1_4:61074817-61074836 None:intergenic 60.0%
GGTTCAAGGGGTTCCCCAAG+GGG + chr1_4:61074822-61074841 None:intergenic 60.0%
GGGTTCAAGGGGTTCCCCAA+GGG + chr1_4:61074823-61074842 None:intergenic 60.0%
TGGGTTCAAGGGGTTCCCCA+AGG + chr1_4:61074824-61074843 None:intergenic 60.0%
CGGCACTGCTTGCTCGTTTC+AGG + chr1_4:61075367-61075386 None:intergenic 60.0%
GGCGAGCAAGTGGTGTGTTC+CGG + chr1_4:61075387-61075406 None:intergenic 60.0%
TACTCGCCTAGGCGAGCAAG+TGG + chr1_4:61075397-61075416 None:intergenic 60.0%
AGGCGAGTAGCTACTCGCCA+TGG - chr1_4:61075429-61075448 Msa0175200:intron 60.0%
AGCTACTCGCCATGGCGAGT+AGG - chr1_4:61075437-61075456 Msa0175200:intron 60.0%
TACTCGCCATGGCGAGTAGG+AGG - chr1_4:61075440-61075459 Msa0175200:intron 60.0%
TGGCGAGTAATAGCTCGCCG+TGG - chr1_4:61075499-61075518 Msa0175200:intron 60.0%
ATAGCTCGCCGTGGCGAGTT+AGG - chr1_4:61075508-61075527 Msa0175200:intron 60.0%
GTGGCGAGTTAGGACAGTCC+AGG - chr1_4:61075518-61075537 Msa0175200:intron 60.0%
GAGGAGGGAGATCGATGGAG+AGG - chr1_4:61076353-61076372 Msa0175200:intron 60.0%
!! CGCTTGCGGGTTAGGGATGC+AGG + chr1_4:61069220-61069239 None:intergenic 65.0%
TGGCTGGCAGAGGAGGAGGA+TGG - chr1_4:61069379-61069398 Msa0175200:three_prime_UTR 65.0%
GGCTGGCAGAGGAGGAGGAT+GGG - chr1_4:61069380-61069399 Msa0175200:three_prime_UTR 65.0%
GCTGGCAGAGGAGGAGGATG+GGG - chr1_4:61069381-61069400 Msa0175200:three_prime_UTR 65.0%
GGAGGAGGATGGGGATTCCG+TGG - chr1_4:61069390-61069409 Msa0175200:three_prime_UTR 65.0%
GGATGGGGATTCCGTGGACG+TGG - chr1_4:61069396-61069415 Msa0175200:three_prime_UTR 65.0%
CAGGCGGTTGACAGCAGAGG+TGG + chr1_4:61071437-61071456 None:intergenic 65.0%
! TAGCGTCGTGCTGGTGGCAG+TGG + chr1_4:61071564-61071583 None:intergenic 65.0%
TGCTCGCCTCCTACTCGCCA+TGG + chr1_4:61075449-61075468 None:intergenic 65.0%
ATGGCGAGTAGGAGGCGAGC+AGG - chr1_4:61075448-61075467 Msa0175200:intron 65.0%
GAGCTGGAAGGCCGAACAGG+GGG + chr1_4:61075475-61075494 None:intergenic 65.0%
CGAGCTGGAAGGCCGAACAG+GGG + chr1_4:61075476-61075495 None:intergenic 65.0%
GCGAGCTGGAAGGCCGAACA+GGG + chr1_4:61075477-61075496 None:intergenic 65.0%
AGCGAGCTGGAAGGCCGAAC+AGG + chr1_4:61075478-61075497 None:intergenic 65.0%
TTCGGCCTTCCAGCTCGCTG+TGG - chr1_4:61075479-61075498 Msa0175200:intron 65.0%
ACTCGCCACAGCGAGCTGGA+AGG + chr1_4:61075487-61075506 None:intergenic 65.0%
!! TACCGTCGTGACGGGCACCG+TGG - chr1_4:61069255-61069274 Msa0175200:three_prime_UTR 70.0%
CACCACGGTGCCCGTCACGA+CGG + chr1_4:61069260-61069279 None:intergenic 70.0%
GGCGAGCAGGACCCCCTGTT+CGG - chr1_4:61075461-61075480 Msa0175200:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61069195 61077893 61069195 ID=Msa0175200;Name=Msa0175200
chr1_4 mRNA 61069195 61077893 61069195 ID=Msa0175200-mRNA-1;Parent=Msa0175200;Name=Msa0175200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=121|0.83|0.85|1|0.83|0.71|7|420|194
chr1_4 exon 61069195 61069755 61069195 ID=Msa0175200-mRNA-1:exon:19461;Parent=Msa0175200-mRNA-1
chr1_4 exon 61074867 61074925 61074867 ID=Msa0175200-mRNA-1:exon:19460;Parent=Msa0175200-mRNA-1
chr1_4 exon 61076860 61076907 61076860 ID=Msa0175200-mRNA-1:exon:19459;Parent=Msa0175200-mRNA-1
chr1_4 exon 61077032 61077148 61077032 ID=Msa0175200-mRNA-1:exon:19458;Parent=Msa0175200-mRNA-1
chr1_4 exon 61077379 61077511 61077379 ID=Msa0175200-mRNA-1:exon:19457;Parent=Msa0175200-mRNA-1
chr1_4 exon 61077624 61077718 61077624 ID=Msa0175200-mRNA-1:exon:19456;Parent=Msa0175200-mRNA-1
chr1_4 exon 61077781 61077893 61077781 ID=Msa0175200-mRNA-1:exon:19455;Parent=Msa0175200-mRNA-1
chr1_4 five_prime_UTR 61077781 61077893 61077781 ID=Msa0175200-mRNA-1:five_prime_utr;Parent=Msa0175200-mRNA-1
chr1_4 five_prime_UTR 61077711 61077718 61077711 ID=Msa0175200-mRNA-1:five_prime_utr;Parent=Msa0175200-mRNA-1
chr1_4 CDS 61077624 61077710 61077624 ID=Msa0175200-mRNA-1:cds;Parent=Msa0175200-mRNA-1
chr1_4 CDS 61077379 61077511 61077379 ID=Msa0175200-mRNA-1:cds;Parent=Msa0175200-mRNA-1
chr1_4 CDS 61077032 61077148 61077032 ID=Msa0175200-mRNA-1:cds;Parent=Msa0175200-mRNA-1
chr1_4 CDS 61076860 61076907 61076860 ID=Msa0175200-mRNA-1:cds;Parent=Msa0175200-mRNA-1
chr1_4 CDS 61074867 61074925 61074867 ID=Msa0175200-mRNA-1:cds;Parent=Msa0175200-mRNA-1
chr1_4 CDS 61069615 61069755 61069615 ID=Msa0175200-mRNA-1:cds;Parent=Msa0175200-mRNA-1
chr1_4 three_prime_UTR 61069195 61069614 61069195 ID=Msa0175200-mRNA-1:three_prime_utr;Parent=Msa0175200-mRNA-1
Gene Sequence

>Msa0175200

ATGGCTGGCAGAGGAGGAGGATGGGGATTCCGTGGACGTGGAAGAGGCGCATATGTCCGTCCAGTCCCATTTGTTGTTTTTCCCGAGGATATTAATTTGCCTGATGCTAAACCCGGAGAAGTGGATGCTTCTATGAGACGGTTATGTAAATTGGATCATGAGTTTGATAATTTTTTCAGATCTGCTCCTTATTTCTTGGAGGAGAAGGCACAATTCAAGGGGCGCAAAAGAAAGATGCACGTACAAAGATTCTCTGACAAGAAGAAGACCAGCTTTACTCGTGATTCTCTGCCACAGGTTTTAGTTTACGACGAATTTATTAAGGAGTTGGTTCCAGGTAAAACTATGCTGAGCCGGAAAAAACGTACATGGAACCCAGAAGAAGTGGAAAATGAAGAGGGTAACGAGTCCGAAGATGATTTCCAAGATGGTGATTATAATCAGAATGAGTACTTTGACGACGATGAAGACGATTATAATGTTGATGATACTGGGCCTGGTATTATCACTTTACTGGTTCAACGCATTTTTTCATTCATTTTGCCATCGTATTCCAAATTACAGCTTCGTAATTCTCCAGCTTAA
Protein sequence

>Msa0175200

MAGRGGGWGFRGRGRGAYVRPVPFVVFPEDINLPDAKPGEVDASMRRLCKLDHEFDNFFRSAPYFLEEKAQFKGRKRKMHVQRFSDKKKTSFTRDSLPQVLVYDEFIKELVPGKTMLSRKKRTWNPEEVENEEGNESEDDFQDGDYNQNEYFDDDEDDYNVDDTGPGIITLLVQRIFSFILPSYSKLQLRNSPA*