AlfalfaGEDB | Msa0830990

M. sativa cultivar zhongmu-4 / Msa0830990

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830990	XP_003611004.1	95.692	325	8	2	1	324	1	320	0.0	630

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830990	sp\|Q9C7W2\|ERF61_ARATH	49.249	333	136	11	8	323	18	334	2.80e-69	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830990	G7KAL6	95.692	325	8	2	1	324	1	320	0.0	630

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TFs/TRs:

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Gene ID	Type	Classification
Msa0830990	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0830990	-0.842055	3.266713e-58	-8.615850e-47
Msa0001950	Msa0830990	0.820540	6.498196e-53	-8.615850e-47
Msa0004980	Msa0830990	0.801310	9.565398e-49	-8.615850e-47
Msa0027580	Msa0830990	0.820273	7.484267e-53	-8.615850e-47
Msa0030310	Msa0830990	0.829275	5.639788e-55	-8.615850e-47
Msa0030380	Msa0830990	0.835737	1.409745e-56	-8.615850e-47
Msa0032840	Msa0830990	-0.808694	2.731021e-50	-8.615850e-47
Msa0041620	Msa0830990	0.800522	1.385557e-48	-8.615850e-47
Msa0073670	Msa0830990	0.811268	7.622944e-51	-8.615850e-47
Msa0075340	Msa0830990	0.820022	8.542370e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830990	MtrunA17_Chr5g0396741	95.692	325	8	2	1	324	1	320	0.0	630
Msa0830990	MtrunA17_Chr3g0115631	52.096	167	58	4	120	266	148	312	8.12e-45	155
Msa0830990	MtrunA17_Chr5g0425561	65.000	100	31	2	114	212	165	261	4.12e-40	144
Msa0830990	MtrunA17_Chr8g0382491	65.591	93	24	2	120	212	111	195	2.71e-37	134
Msa0830990	MtrunA17_Chr1g0196781	40.385	208	81	6	118	324	148	313	4.45e-36	132
Msa0830990	MtrunA17_Chr2g0324131	81.967	61	11	0	120	180	216	276	5.43e-30	118
Msa0830990	MtrunA17_Chr8g0335321	47.321	112	50	4	84	186	53	164	3.88e-26	103
Msa0830990	MtrunA17_Chr1g0150661	44.167	120	63	2	120	238	33	149	1.13e-24	99.8
Msa0830990	MtrunA17_Chr1g0150671	37.349	166	95	3	79	241	2	161	3.44e-24	99.8
Msa0830990	MtrunA17_Chr7g0221501	67.213	61	20	0	118	178	47	107	1.18e-23	95.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0830990	AT1G64380.1	49.249	333	136	11	8	323	18	334	2.84e-70	222
Msa0830990	AT1G78080.1	51.176	170	67	5	120	274	150	318	2.36e-44	155
Msa0830990	AT4G39780.1	61.765	102	38	1	113	214	84	184	4.16e-40	142
Msa0830990	AT1G22190.1	58.182	110	36	2	111	220	74	173	1.09e-38	138
Msa0830990	AT2G22200.1	61.458	96	28	1	119	214	68	154	1.49e-36	132
Msa0830990	AT1G36060.1	60.606	99	39	0	120	218	141	239	2.13e-36	133
Msa0830990	AT4G13620.1	39.706	204	73	5	120	323	230	383	7.36e-33	125
Msa0830990	AT5G65130.1	60.000	90	29	2	120	209	109	191	1.98e-30	116
Msa0830990	AT5G65130.2	60.000	90	29	2	120	209	111	193	2.06e-30	116
Msa0830990	AT2G20880.1	80.328	61	12	0	120	180	185	245	6.19e-29	114

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Find 53 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGGCATTCTTGCTA+AGG	0.531887	5_4:-4043421	None:intergenic
AAGAAGATGAAGAAGAATTC+AGG	0.374931	5_4:+4043171	Msa0830990:CDS
AAGATTTGAACAGCCCAAGA+AGG	0.553206	5_4:-4042632	None:intergenic
AATAGAATGAGAGTTTGGCT+TGG	0.577666	5_4:+4042928	Msa0830990:CDS
AATTCAAGCTATTTGCCAAA+AGG	0.481211	5_4:+4043116	Msa0830990:CDS
AATTTGTGGTGTATAGTGAA+GGG	0.636368	5_4:-4042774	None:intergenic
ACAAACAGCACAACCTTCTT+GGG	0.390669	5_4:+4042619	Msa0830990:CDS
ACAGAGACACTGGGGAAAAT+GGG	0.468350	5_4:+4042882	Msa0830990:CDS
ACCATTGTCGAAACCGAATT+CGG	0.358811	5_4:-4043369	None:intergenic
AGAACTTCCCAAATCAATTC+AGG	0.364637	5_4:-4043447	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTCAAATCTTGAACCTTT+AGG	+	chr5_4:4042643-4042662	Msa0830990:CDS	30.0%
GATTGATGTGAAAATGAAGA+TGG	-	chr5_4:4042745-4042764	None:intergenic	30.0%
AATTTGTGGTGTATAGTGAA+GGG	-	chr5_4:4042777-4042796	None:intergenic	30.0%
TGTAAGAAAAAGCTATACAG+AGG	+	chr5_4:4042853-4042872	Msa0830990:CDS	30.0%
TTTGAAAGATCCAACTAAGT+TGG	+	chr5_4:4043041-4043060	Msa0830990:CDS	30.0%
TTGAAAGATCCAACTAAGTT+GGG	+	chr5_4:4043042-4043061	Msa0830990:CDS	30.0%
AATTCAAGCTATTTGCCAAA+AGG	+	chr5_4:4043116-4043135	Msa0830990:CDS	30.0%
TATTTGCCAAAAGGTGAAAA+GGG	+	chr5_4:4043125-4043144	Msa0830990:CDS	30.0%
AAGAAGATGAAGAAGAATTC+AGG	+	chr5_4:4043171-4043190	Msa0830990:CDS	30.0%
CAATCATCACAAAAAACAAG+AGG	-	chr5_4:4043288-4043307	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	4042505	4043479	4042505	ID=Msa0830990;Name=Msa0830990
chr5_4	mRNA	4042505	4043479	4042505	ID=Msa0830990-mRNA-1;Parent=Msa0830990;Name=Msa0830990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|324
chr5_4	exon	4042505	4043479	4042505	ID=Msa0830990-mRNA-1:exon:1576;Parent=Msa0830990-mRNA-1
chr5_4	CDS	4042505	4043479	4042505	ID=Msa0830990-mRNA-1:cds;Parent=Msa0830990-mRNA-1

Gene Sequence

>Msa0830990

ATGGAGGGAATGCAAAACAGAGATATTGGATCATGTTTATCAAATCTCATATTATCAAGTTCAACAAACACACTTGACTCTATTTTCTCAGATATTCCTTCAACAAACACCACCACAAACAGCACAACCTTCTTGGGCTGTTCAAATCTTGAACCTTTAGGTTCCTCTGTTTACCTTCGCCAGAGAGATATTTTACAAAAATTCCACGAAGAAAGCCGATTAAACGGCTCATTCGTTCCATCTTCATTTTCACATCAATCTCTACTAAACCCTTCACTATACACCACAAATTCAAGTTCAATTTCAAGTTTTTCATGTTCAAGTTCGTTCACTTCTTTGGTGAATCCTTGTAAGAAAAAGCTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTAGCTGAGATTAGACTTCCACAGAATAGAATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTCGAGGCGAATACGCGCGTTTAAATTTTCCAAATTTGAAAGATCCAACTAAGTTGGGTTTTGGAGATTCTACTAGATTGAATGCTTTGAAGAATTCTGTTGATGCTAAAATTCAAGCTATTTGCCAAAAGGTGAAAAGGGAAAAAGCTAAAAAGATTGCTGCAAAGAAGATGAAGAAGAATTCAGGTAGTAATAATGATACAAAGAGTGATAAAAATTCAGACAAGATTATTAATTCATCTTCTTGTTCTTCTTCTTCGTCTTCGTTACCACTTTCGCCTCTTGTTTTTTGTGATGATTGGGTGAATGAATTGTTTTCACCAACTGTTTCTGAGGATGGAATTTGGAAAGGGGAGAATTCTCCGAATTCGGTTTCGACAATGGTGACAGAGGAAACAGAGTTTGAAGATTGTTCCTTAGCAAGAATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTTGCTGTTTAG

Protein sequence

>Msa0830990

MEGMQNRDIGSCLSNLILSSSTNTLDSIFSDIPSTNTTTNSTTFLGCSNLEPLGSSVYLRQRDILQKFHEESRLNGSFVPSSFSHQSLLNPSLYTTNSSSISSFSCSSSFTSLVNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTRLNALKNSVDAKIQAICQKVKREKAKKIAAKKMKKNSGSNNDTKSDKNSDKIINSSSCSSSSSSLPLSPLVFCDDWVNELFSPTVSEDGIWKGENSPNSVSTMVTEETEFEDCSLARMPSFDPELIWEVLAV*