AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0830990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830990 MtrunA17_Chr5g0396741 95.692 325 8 2 1 324 1 320 0.0 630
Msa0830990 MtrunA17_Chr3g0115631 52.096 167 58 4 120 266 148 312 8.12e-45 155
Msa0830990 MtrunA17_Chr5g0425561 65.000 100 31 2 114 212 165 261 4.12e-40 144
Msa0830990 MtrunA17_Chr8g0382491 65.591 93 24 2 120 212 111 195 2.71e-37 134
Msa0830990 MtrunA17_Chr1g0196781 40.385 208 81 6 118 324 148 313 4.45e-36 132
Msa0830990 MtrunA17_Chr2g0324131 81.967 61 11 0 120 180 216 276 5.43e-30 118
Msa0830990 MtrunA17_Chr8g0335321 47.321 112 50 4 84 186 53 164 3.88e-26 103
Msa0830990 MtrunA17_Chr1g0150661 44.167 120 63 2 120 238 33 149 1.13e-24 99.8
Msa0830990 MtrunA17_Chr1g0150671 37.349 166 95 3 79 241 2 161 3.44e-24 99.8
Msa0830990 MtrunA17_Chr7g0221501 67.213 61 20 0 118 178 47 107 1.18e-23 95.5
Msa0830990 MtrunA17_Chr1g0150631 40.000 130 69 2 115 238 31 157 1.25e-23 97.1
Msa0830990 MtrunA17_Chr8g0335331 56.471 85 36 1 99 182 102 186 2.56e-23 95.5
Msa0830990 MtrunA17_Chr2g0295421 63.492 63 23 0 117 179 91 153 6.26e-23 95.9
Msa0830990 MtrunA17_Chr1g0150691 61.538 65 25 0 115 179 15 79 6.55e-23 94.7
Msa0830990 MtrunA17_Chr7g0221471 67.213 61 20 0 118 178 47 107 7.96e-23 93.6
Msa0830990 MtrunA17_Chr8g0335311 57.317 82 33 2 102 182 77 157 8.94e-23 94.0
Msa0830990 MtrunA17_Chr4g0055761 70.312 64 18 1 116 178 139 202 1.24e-22 95.1
Msa0830990 MtrunA17_Chr1g0195151 63.077 65 24 0 118 182 73 137 3.22e-22 94.7
Msa0830990 MtrunA17_Chr4g0044901 48.936 94 35 1 122 215 96 176 3.74e-22 93.2
Msa0830990 MtrunA17_Chr8g0375031 67.797 59 19 0 119 177 122 180 7.03e-22 92.0
Msa0830990 MtrunA17_Chr4g0044911 64.062 64 23 0 122 185 96 159 1.35e-21 91.7
Msa0830990 MtrunA17_Chr3g0134161 64.516 62 22 0 119 180 42 103 1.68e-21 89.7
Msa0830990 MtrunA17_Chr4g0044871 68.421 57 18 0 122 178 96 152 2.43e-21 90.9
Msa0830990 MtrunA17_Chr2g0301181 36.552 145 68 3 121 265 18 138 2.53e-21 90.9
Msa0830990 MtrunA17_Chr2g0301191 57.971 69 27 1 121 189 18 84 2.76e-21 90.1
Msa0830990 MtrunA17_Chr4g0044881 48.454 97 28 2 118 192 110 206 3.89e-21 90.5
Msa0830990 MtrunA17_Chr4g0003421 61.538 65 25 0 114 178 32 96 3.90e-21 90.5
Msa0830990 MtrunA17_Chr2g0301171 50.617 81 38 1 121 201 18 96 5.55e-21 89.0
Msa0830990 MtrunA17_Chr8g0383591 66.667 60 20 0 119 178 142 201 6.32e-21 91.3
Msa0830990 MtrunA17_Chr2g0283171 44.167 120 40 5 64 178 23 120 7.29e-21 87.4
Msa0830990 MtrunA17_Chr3g0126321 53.333 90 38 2 120 207 111 198 7.59e-21 91.7
Msa0830990 MtrunA17_Chr4g0046161 62.500 64 23 1 117 179 52 115 8.57e-21 86.3
Msa0830990 MtrunA17_Chr4g0063751 64.407 59 21 0 120 178 5 63 1.15e-20 88.6
Msa0830990 MtrunA17_Chr7g0250711 62.121 66 24 1 116 180 54 119 1.16e-20 88.2
Msa0830990 MtrunA17_Chr7g0232261 60.606 66 26 0 115 180 54 119 1.47e-20 89.0
Msa0830990 MtrunA17_Chr4g0026881 35.294 187 89 7 74 244 39 209 1.54e-20 89.0
Msa0830990 MtrunA17_Chr5g0401871 46.465 99 48 2 119 212 22 120 2.48e-20 86.7
Msa0830990 MtrunA17_Chr2g0333011 50.000 92 45 1 120 210 5 96 2.56e-20 86.7
Msa0830990 MtrunA17_Chr4g0002631 63.333 60 22 0 119 178 5 64 2.77e-20 87.0
Msa0830990 MtrunA17_Chr7g0257911 63.333 60 22 0 122 181 31 90 5.02e-20 88.6
Msa0830990 MtrunA17_Chr2g0334031 60.656 61 24 0 118 178 113 173 5.10e-20 89.4
Msa0830990 MtrunA17_Chr5g0399441 60.317 63 25 0 118 180 24 86 6.13e-20 85.9
Msa0830990 MtrunA17_Chr1g0153151 63.934 61 22 0 120 180 42 102 6.43e-20 85.5
Msa0830990 MtrunA17_Chr7g0250731 64.516 62 21 1 120 180 59 120 8.08e-20 86.3
Msa0830990 MtrunA17_Chr3g0137174 63.333 60 22 0 119 178 5 64 8.91e-20 85.5
Msa0830990 MtrunA17_Chr2g0323171 64.407 59 21 0 122 180 65 123 9.36e-20 85.5
Msa0830990 MtrunA17_Chr7g0250721 44.248 113 50 2 81 180 8 120 9.79e-20 85.9
Msa0830990 MtrunA17_Chr5g0396911 66.129 62 19 1 116 177 108 167 1.10e-19 87.8
Msa0830990 MtrunA17_Chr4g0023411 63.333 60 22 0 122 181 65 124 1.15e-19 85.5
Msa0830990 MtrunA17_Chr8g0344961 60.656 61 24 0 118 178 120 180 1.16e-19 88.6
Msa0830990 MtrunA17_Chr6g0486701 65.000 60 21 0 121 180 43 102 1.33e-19 85.9
Msa0830990 MtrunA17_Chr7g0275841 54.839 62 28 0 118 179 24 85 1.79e-19 84.3
Msa0830990 MtrunA17_Chr5g0437671 63.934 61 22 0 122 182 85 145 2.56e-19 87.8
Msa0830990 MtrunA17_Chr3g0140161 55.385 65 29 0 118 182 39 103 3.19e-19 84.0
Msa0830990 MtrunA17_Chr3g0136551 44.762 105 44 3 119 223 62 152 3.45e-19 85.9
Msa0830990 MtrunA17_Chr7g0225131 53.623 69 29 1 120 188 27 92 3.74e-19 80.9
Msa0830990 MtrunA17_Chr2g0331231 52.703 74 31 1 121 190 40 113 9.59e-19 83.2
Msa0830990 MtrunA17_Chr4g0055781 65.079 63 21 1 117 178 97 159 1.11e-18 84.0
Msa0830990 MtrunA17_Chr4g0055801 65.079 63 21 1 117 178 149 211 1.18e-18 84.7
Msa0830990 MtrunA17_Chr7g0265851 52.000 75 36 0 105 179 7 81 1.21e-18 82.8
Msa0830990 MtrunA17_Chr2g0316931 59.016 61 25 0 118 178 27 87 1.62e-18 82.4
Msa0830990 MtrunA17_Chr8g0334801 54.286 70 32 0 111 180 41 110 1.64e-18 82.4
Msa0830990 MtrunA17_Chr8g0387801 63.793 58 21 0 120 177 105 162 1.68e-18 84.3
Msa0830990 MtrunA17_Chr8g0340311 55.556 63 28 0 118 180 43 105 1.85e-18 82.4
Msa0830990 MtrunA17_Chr5g0438831 46.237 93 47 1 86 178 13 102 2.03e-18 84.0
Msa0830990 MtrunA17_Chr5g0438801 48.235 85 43 1 94 178 24 107 2.03e-18 84.0
Msa0830990 MtrunA17_Chr8g0390091 46.591 88 37 1 103 180 8 95 2.12e-18 82.8
Msa0830990 MtrunA17_Chr1g0184081 66.102 59 19 1 122 179 21 79 2.17e-18 80.5
Msa0830990 MtrunA17_Chr1g0158971 42.963 135 46 5 119 252 112 216 2.32e-18 84.7
Msa0830990 MtrunA17_Chr2g0283181 32.911 237 121 11 19 225 32 260 2.66e-18 83.6
Msa0830990 MtrunA17_Chr5g0437371 67.797 59 19 0 119 177 63 121 3.01e-18 84.0
Msa0830990 MtrunA17_Chr3g0099871 59.091 66 26 1 118 183 23 87 3.13e-18 82.0
Msa0830990 MtrunA17_Chr4g0017851 56.897 58 25 0 121 178 117 174 4.21e-18 83.2
Msa0830990 MtrunA17_Chr2g0282651 56.923 65 28 0 114 178 62 126 4.78e-18 82.0
Msa0830990 MtrunA17_Chr1g0170531 61.667 60 22 1 120 178 87 146 7.99e-18 81.3
Msa0830990 MtrunA17_Chr1g0189941 62.500 56 21 0 122 177 24 79 8.55e-18 79.3
Msa0830990 MtrunA17_Chr3g0136541 45.000 100 41 3 124 223 42 127 9.10e-18 81.3
Msa0830990 MtrunA17_Chr4g0055951 57.627 59 25 0 122 180 74 132 1.79e-17 80.9
Msa0830990 MtrunA17_Chr1g0186731 62.712 59 21 1 122 179 21 79 1.90e-17 77.8
Msa0830990 MtrunA17_Chr2g0282621 50.000 90 39 2 107 196 2 85 2.08e-17 78.6
Msa0830990 MtrunA17_Chr8g0346741 53.226 62 29 0 118 179 35 96 3.07e-17 78.2
Msa0830990 MtrunA17_Chr1g0186671 65.000 60 18 2 122 179 19 77 4.30e-17 76.6
Msa0830990 MtrunA17_Chr8g0367911 60.714 56 22 0 122 177 44 99 8.56e-17 79.3
Msa0830990 MtrunA17_Chr5g0432821 61.404 57 22 0 122 178 124 180 9.25e-17 79.0
Msa0830990 MtrunA17_Chr4g0026931 40.602 133 67 5 114 243 123 246 1.34e-16 78.6
Msa0830990 MtrunA17_Chr5g0412641 62.500 56 21 0 122 177 46 101 2.60e-16 79.0
Msa0830990 MtrunA17_Chr7g0261101 61.905 63 23 1 118 179 16 78 3.08e-16 74.7
Msa0830990 MtrunA17_Chr1g0146191 49.438 89 45 0 94 182 19 107 3.36e-16 77.0
Msa0830990 MtrunA17_Chr4g0062551 52.308 65 31 0 115 179 46 110 3.96e-16 74.3
Msa0830990 MtrunA17_Chr5g0396191 43.636 110 53 1 122 231 11 111 4.04e-16 75.5
Msa0830990 MtrunA17_Chr6g0473971 55.000 60 27 0 118 177 50 109 4.78e-16 76.6
Msa0830990 MtrunA17_Chr5g0396301 53.968 63 27 1 120 180 16 78 5.28e-16 74.3
Msa0830990 MtrunA17_Chr7g0261151 58.209 67 27 1 118 183 16 82 5.59e-16 73.6
Msa0830990 MtrunA17_Chr6g0473981 54.839 62 28 0 118 179 50 111 5.63e-16 76.3
Msa0830990 MtrunA17_Chr4g0062161 52.308 65 31 0 115 179 46 110 5.68e-16 75.5
Msa0830990 MtrunA17_Chr6g0473961 56.667 60 26 0 118 177 50 109 5.81e-16 75.5
Msa0830990 MtrunA17_Chr6g0473941 56.667 60 26 0 118 177 29 88 5.82e-16 75.5
Msa0830990 MtrunA17_Chr1g0203861 44.444 99 41 2 93 177 1 99 7.72e-16 75.1
Msa0830990 MtrunA17_Chr2g0286161 55.357 56 25 0 122 177 50 105 1.05e-15 76.3
Msa0830990 MtrunA17_Chr1g0196871 58.621 58 23 1 122 178 16 73 1.08e-15 71.6
Msa0830990 MtrunA17_Chr6g0473931 54.839 62 28 0 118 179 29 90 1.12e-15 74.3
Msa0830990 MtrunA17_Chr7g0252381 60.714 56 22 0 122 177 42 97 1.18e-15 75.9
Msa0830990 MtrunA17_Chr6g0473881 55.000 60 27 0 118 177 106 165 2.06e-15 75.5
Msa0830990 MtrunA17_Chr8g0350701 58.621 58 24 0 120 177 25 82 2.25e-15 75.5
Msa0830990 MtrunA17_Chr4g0066931 55.357 56 25 0 122 177 53 108 2.47e-15 75.9
Msa0830990 MtrunA17_Chr1g0149331 45.370 108 41 2 118 211 3 106 2.48e-15 73.6
Msa0830990 MtrunA17_Chr6g0474001 55.000 60 27 0 118 177 50 109 3.32e-15 74.3
Msa0830990 MtrunA17_Chr3g0131601 50.000 92 45 1 98 188 52 143 4.85e-15 73.9
Msa0830990 MtrunA17_Chr1g0184061 52.308 65 30 1 114 177 69 133 5.75e-15 72.8
Msa0830990 MtrunA17_Chr7g0243431 58.730 63 19 1 122 177 78 140 5.98e-15 75.5
Msa0830990 MtrunA17_Chr6g0473781 53.226 62 29 0 118 179 53 114 6.03e-15 73.2
Msa0830990 MtrunA17_Chr6g0473771 46.575 73 35 1 105 177 30 98 6.64e-15 70.1
Msa0830990 MtrunA17_Chr3g0137831 47.059 102 43 2 120 210 6 107 7.68e-15 72.4
Msa0830990 MtrunA17_Chr1g0183981 54.688 64 28 1 115 177 68 131 9.10e-15 72.4
Msa0830990 MtrunA17_Chr2g0297331 61.017 59 22 1 122 179 14 72 1.05e-14 70.1
Msa0830990 MtrunA17_Chr7g0253424 58.929 56 23 0 122 177 39 94 1.19e-14 72.8
Msa0830990 MtrunA17_Chr3g0129421 64.706 68 21 1 119 183 167 234 1.22e-14 73.9
Msa0830990 MtrunA17_Chr6g0453661 57.627 59 25 0 119 177 35 93 1.25e-14 73.9
Msa0830990 MtrunA17_Chr1g0186681 58.333 60 23 1 122 179 19 78 1.68e-14 69.3
Msa0830990 MtrunA17_Chr6g0486711 58.730 63 26 0 118 180 45 107 1.92e-14 71.6
Msa0830990 MtrunA17_Chr1g0155751 60.938 64 25 0 122 185 39 102 2.02e-14 72.4
Msa0830990 MtrunA17_Chr6g0473741 51.613 62 30 0 118 179 62 123 2.08e-14 71.6
Msa0830990 MtrunA17_Chr1g0184031 55.738 61 26 1 118 177 80 140 2.23e-14 71.2
Msa0830990 MtrunA17_Chr7g0217991 57.627 59 25 0 119 177 39 97 2.36e-14 73.6
Msa0830990 MtrunA17_Chr6g0473861 53.333 60 28 0 118 177 59 118 4.07e-14 71.6
Msa0830990 MtrunA17_Chr8g0378811 58.929 56 23 0 122 177 55 110 4.14e-14 71.2
Msa0830990 MtrunA17_Chr7g0261171 60.526 76 27 2 105 177 66 141 4.42e-14 70.9
Msa0830990 MtrunA17_Chr1g0184071 53.968 63 28 1 116 177 63 125 4.88e-14 69.3
Msa0830990 MtrunA17_Chr5g0396171 52.632 57 27 0 124 180 26 82 5.29e-14 67.0
Msa0830990 MtrunA17_Chr1g0184011 58.182 55 22 1 124 177 86 140 5.81e-14 70.1
Msa0830990 MtrunA17_Chr1g0186741 42.742 124 65 2 116 238 67 185 1.13e-13 68.9
Msa0830990 MtrunA17_Chr4g0042761 57.627 59 25 0 119 177 45 103 1.75e-13 70.1
Msa0830990 MtrunA17_Chr6g0461271 57.143 56 24 0 122 177 33 88 4.31e-13 68.9
Msa0830990 MtrunA17_Chr4g0057241 53.226 62 28 1 118 179 11 71 4.36e-13 66.6
Msa0830990 MtrunA17_Chr7g0261181 62.712 59 21 1 122 179 13 71 4.50e-13 65.5
Msa0830990 MtrunA17_Chr1g0200931 50.820 61 29 1 118 177 19 79 4.58e-13 65.9
Msa0830990 MtrunA17_Chr6g0461941 69.841 63 19 0 118 180 16 78 5.27e-13 67.0
Msa0830990 MtrunA17_Chr2g0321071 50.000 64 30 2 118 179 43 106 6.57e-13 67.0
Msa0830990 MtrunA17_Chr5g0398091 50.000 66 27 1 118 177 50 115 6.96e-13 67.0
Msa0830990 MtrunA17_Chr5g0398081 50.000 66 27 1 118 177 45 110 7.35e-13 67.0
Msa0830990 MtrunA17_Chr5g0398061 50.000 66 27 1 118 177 45 110 1.72e-12 65.9
Msa0830990 MtrunA17_Chr5g0396181 55.932 59 26 0 122 180 21 79 1.90e-12 65.1
Msa0830990 MtrunA17_Chr1g0183961 61.017 59 22 1 122 179 27 85 2.70e-12 63.9
Msa0830990 MtrunA17_Chr8g0345531 50.769 65 28 2 107 169 103 165 4.31e-12 66.2
Msa0830990 MtrunA17_Chr3g0142081 62.712 59 22 0 122 180 39 97 6.96e-12 64.3
Msa0830990 MtrunA17_Chr1g0183931 55.556 81 34 2 100 178 78 158 1.17e-11 63.9
Msa0830990 MtrunA17_Chr1g0170471 56.000 50 21 1 130 178 91 140 1.28e-11 62.4
Msa0830990 MtrunA17_Chr7g0261201 56.061 66 28 1 114 178 90 155 1.71e-11 63.2
Msa0830990 MtrunA17_Chr1g0209891 57.692 52 20 1 122 171 54 105 1.77e-11 63.9
Msa0830990 MtrunA17_Chr1g0205961 60.976 41 16 0 122 162 115 155 1.92e-11 64.3
Msa0830990 MtrunA17_Chr5g0424051 61.290 62 23 1 118 178 92 153 3.55e-11 63.2
Msa0830990 MtrunA17_Chr3g0083501 51.020 49 24 0 130 178 3 51 4.82e-11 58.2
Msa0830990 MtrunA17_Chr3g0114761 53.731 67 29 1 114 178 17 83 8.81e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830990 AT1G64380.1 49.249 333 136 11 8 323 18 334 2.84e-70 222
Msa0830990 AT1G78080.1 51.176 170 67 5 120 274 150 318 2.36e-44 155
Msa0830990 AT4G39780.1 61.765 102 38 1 113 214 84 184 4.16e-40 142
Msa0830990 AT1G22190.1 58.182 110 36 2 111 220 74 173 1.09e-38 138
Msa0830990 AT2G22200.1 61.458 96 28 1 119 214 68 154 1.49e-36 132
Msa0830990 AT1G36060.1 60.606 99 39 0 120 218 141 239 2.13e-36 133
Msa0830990 AT4G13620.1 39.706 204 73 5 120 323 230 383 7.36e-33 125
Msa0830990 AT5G65130.1 60.000 90 29 2 120 209 109 191 1.98e-30 116
Msa0830990 AT5G65130.2 60.000 90 29 2 120 209 111 193 2.06e-30 116
Msa0830990 AT2G20880.1 80.328 61 12 0 120 180 185 245 6.19e-29 114
Msa0830990 AT4G28140.1 74.576 59 15 0 120 178 141 199 7.09e-25 102
Msa0830990 AT2G47520.1 64.062 64 23 0 118 181 46 109 5.12e-23 94.0
Msa0830990 AT5G13330.1 63.235 68 24 1 118 184 35 102 1.05e-22 94.4
Msa0830990 AT2G33710.2 53.333 90 39 2 99 186 48 136 1.28e-22 94.7
Msa0830990 AT2G33710.1 53.333 90 39 2 99 186 48 136 1.75e-22 94.0
Msa0830990 AT4G17500.1 61.644 73 27 1 107 178 133 205 7.95e-22 93.2
Msa0830990 AT5G61890.1 64.516 62 22 0 117 178 85 146 8.86e-22 92.8
Msa0830990 AT3G16770.1 61.905 63 24 0 118 180 75 137 1.13e-21 92.4
Msa0830990 AT4G36900.1 63.492 63 23 0 118 180 26 88 1.48e-21 90.9
Msa0830990 AT1G71450.1 64.407 59 21 0 122 180 24 82 2.07e-21 90.1
Msa0830990 AT2G44840.1 67.188 64 20 1 118 180 88 151 2.35e-21 91.3
Msa0830990 AT3G57600.1 58.904 73 30 0 122 194 28 100 2.44e-21 92.0
Msa0830990 AT1G46768.1 64.516 62 22 0 119 180 28 89 2.74e-21 89.0
Msa0830990 AT1G46768.2 64.516 62 22 0 119 180 28 89 2.74e-21 89.0
Msa0830990 AT1G46768.3 64.516 62 22 0 119 180 28 89 3.19e-21 88.6
Msa0830990 AT4G11140.1 68.421 57 18 0 122 178 87 143 3.87e-21 92.0
Msa0830990 AT2G23340.1 65.574 61 21 0 120 180 26 86 4.54e-21 89.0
Msa0830990 AT4G06746.1 65.000 60 21 0 119 178 33 92 8.44e-21 87.4
Msa0830990 AT1G15360.1 64.407 59 21 0 120 178 5 63 1.09e-20 88.6
Msa0830990 AT1G15360.2 64.407 59 21 0 120 178 5 63 1.09e-20 88.6
Msa0830990 AT5G67190.1 46.939 98 50 1 118 213 17 114 1.18e-20 88.2
Msa0830990 AT1G74930.1 56.923 65 28 0 115 179 14 78 2.28e-20 87.8
Msa0830990 AT4G27950.1 66.102 59 20 0 119 177 115 173 3.06e-20 90.1
Msa0830990 AT3G50260.1 58.730 63 26 0 118 180 17 79 5.48e-20 85.5
Msa0830990 AT1G19210.1 62.069 58 22 0 122 179 12 69 5.57e-20 86.3
Msa0830990 AT5G47220.1 66.667 63 20 1 117 178 112 174 6.86e-20 87.4
Msa0830990 AT4G31060.1 56.061 66 29 0 118 183 23 88 8.85e-20 85.9
Msa0830990 AT5G21960.1 63.793 58 21 0 122 179 7 64 1.37e-19 85.9
Msa0830990 AT5G53290.1 65.517 58 20 0 120 177 123 180 1.39e-19 88.6
Msa0830990 AT5G51190.1 45.133 113 54 4 113 218 63 174 1.39e-19 86.3
Msa0830990 AT5G25390.2 59.677 62 25 0 120 181 5 66 1.46e-19 85.5
Msa0830990 AT5G25190.1 61.667 60 23 0 119 178 5 64 2.78e-19 84.3
Msa0830990 AT3G23230.1 65.079 63 21 1 118 179 16 78 3.17e-19 82.8
Msa0830990 AT3G61630.1 58.571 70 29 0 117 186 100 169 3.35e-19 87.0
Msa0830990 AT4G32800.1 57.143 63 27 0 118 180 15 77 3.78e-19 85.1
Msa0830990 AT5G11590.1 56.923 65 28 0 118 182 47 111 6.02e-19 84.7
Msa0830990 AT2G44940.1 60.317 63 25 0 118 180 96 158 6.53e-19 85.9
Msa0830990 AT2G35700.1 57.143 63 27 0 118 180 41 103 7.53e-19 83.6
Msa0830990 AT5G47230.1 62.319 69 25 1 111 178 145 213 7.78e-19 85.5
Msa0830990 AT4G23750.2 42.149 121 65 2 58 177 61 177 9.91e-19 85.9
Msa0830990 AT4G23750.1 42.149 121 65 2 58 177 61 177 9.91e-19 85.9
Msa0830990 AT1G72360.3 50.633 79 36 1 104 179 53 131 1.74e-18 84.0
Msa0830990 AT1G72360.1 60.345 58 23 0 122 179 25 82 1.90e-18 82.8
Msa0830990 AT3G16280.1 54.688 64 29 0 117 180 56 119 2.26e-18 83.2
Msa0830990 AT1G72360.2 60.345 58 23 0 122 179 76 133 2.80e-18 83.6
Msa0830990 AT3G60490.1 61.017 59 23 0 122 180 71 129 3.33e-18 83.2
Msa0830990 AT3G11020.1 66.667 57 19 0 122 178 78 134 3.72e-18 84.3
Msa0830990 AT2G46310.1 62.500 56 21 0 122 177 99 154 4.18e-18 83.6
Msa0830990 AT3G16280.2 54.688 64 29 0 117 180 74 137 4.21e-18 82.8
Msa0830990 AT5G25810.1 55.556 63 28 0 118 180 32 94 4.67e-18 82.0
Msa0830990 AT1G21910.1 61.404 57 22 0 122 178 50 106 4.73e-18 82.0
Msa0830990 AT4G16750.1 54.688 64 29 0 117 180 35 98 4.87e-18 80.9
Msa0830990 AT3G15210.1 56.061 66 29 0 115 180 18 83 5.04e-18 82.0
Msa0830990 AT1G01250.1 53.226 62 29 0 118 179 41 102 7.89e-18 80.5
Msa0830990 AT5G25390.1 58.065 62 23 1 120 181 5 63 9.59e-18 80.1
Msa0830990 AT2G40340.2 59.322 59 24 0 122 180 14 72 1.00e-17 82.4
Msa0830990 AT2G40340.5 59.322 59 24 0 122 180 14 72 1.00e-17 82.4
Msa0830990 AT2G40340.4 59.322 59 24 0 122 180 14 72 1.00e-17 82.4
Msa0830990 AT4G17490.1 62.903 62 22 1 118 178 133 194 1.21e-17 82.0
Msa0830990 AT1G75490.1 63.158 57 21 0 122 178 42 98 1.34e-17 80.5
Msa0830990 AT5G44210.1 46.988 83 43 1 97 178 7 89 1.49e-17 80.1
Msa0830990 AT5G05410.1 64.912 57 20 0 122 178 79 135 1.64e-17 82.4
Msa0830990 AT5G05410.2 64.912 57 20 0 122 178 79 135 1.68e-17 82.0
Msa0830990 AT4G18450.1 40.769 130 60 5 52 177 51 167 1.73e-17 82.0
Msa0830990 AT2G36450.1 53.086 81 33 2 111 186 4 84 2.32e-17 79.3
Msa0830990 AT2G40340.3 59.322 59 24 0 122 180 72 130 2.39e-17 81.3
Msa0830990 AT2G40340.6 59.322 59 24 0 122 180 79 137 2.69e-17 82.0
Msa0830990 AT2G40340.1 59.322 59 24 0 122 180 72 130 2.73e-17 81.6
Msa0830990 AT5G07310.1 69.355 62 19 0 117 178 87 148 4.18e-17 80.1
Msa0830990 AT5G61600.1 60.000 60 23 1 120 178 86 145 4.49e-17 79.7
Msa0830990 AT4G25490.1 58.333 60 25 0 118 177 44 103 8.78e-17 78.2
Msa0830990 AT1G71130.1 51.190 84 32 2 119 193 76 159 9.27e-17 77.0
Msa0830990 AT3G23240.1 50.000 84 41 1 95 177 55 138 9.73e-17 78.2
Msa0830990 AT1G03800.1 55.738 61 27 0 118 178 49 109 1.10e-16 78.6
Msa0830990 AT5G43410.1 62.712 59 21 1 122 179 15 73 1.19e-16 75.9
Msa0830990 AT4G25470.1 56.452 62 27 0 118 179 47 108 1.32e-16 77.8
Msa0830990 AT1G28360.1 57.143 63 26 1 117 178 6 68 1.70e-16 77.0
Msa0830990 AT1G50640.1 56.452 62 27 0 117 178 23 84 2.39e-16 77.4
Msa0830990 AT1G28370.1 57.895 57 24 0 122 178 20 76 2.46e-16 75.9
Msa0830990 AT1G28370.2 57.895 57 24 0 122 178 58 114 3.37e-16 76.3
Msa0830990 AT3G20310.1 43.478 92 36 1 87 178 8 83 3.64e-16 77.0
Msa0830990 AT4G25480.1 54.839 62 28 0 118 179 47 108 3.73e-16 76.6
Msa0830990 AT5G18450.1 62.500 56 21 0 122 177 34 89 6.06e-16 77.4
Msa0830990 AT1G22810.1 50.769 65 30 1 122 184 14 78 6.85e-16 73.9
Msa0830990 AT5G13910.1 61.111 54 21 0 124 177 22 75 9.10e-16 75.5
Msa0830990 AT2G31230.1 56.452 62 26 1 118 178 82 143 1.16e-15 75.9
Msa0830990 AT5G51990.1 56.667 60 26 0 118 177 50 109 1.48e-15 75.1
Msa0830990 AT1G28160.1 60.714 56 22 0 122 177 39 94 1.66e-15 75.5
Msa0830990 AT1G12980.1 60.714 56 22 0 122 177 57 112 1.67e-15 76.6
Msa0830990 AT5G07580.1 60.000 60 23 1 120 178 108 167 1.85e-15 74.3
Msa0830990 AT1G71520.1 50.794 63 27 1 122 180 14 76 2.02e-15 72.8
Msa0830990 AT1G22985.1 59.677 62 22 1 119 177 72 133 2.41e-15 72.8
Msa0830990 AT5G50080.2 68.852 61 19 0 118 178 82 142 4.63e-15 73.9
Msa0830990 AT1G43160.1 65.753 73 21 2 106 178 49 117 4.63e-15 72.8
Msa0830990 AT5G50080.1 68.852 61 19 0 118 178 73 133 4.82e-15 73.6
Msa0830990 AT5G18560.1 57.143 56 24 0 122 177 55 110 5.12e-15 75.1
Msa0830990 AT2G40350.2 55.932 59 26 0 122 180 74 132 7.51e-15 71.6
Msa0830990 AT1G24590.1 60.714 56 22 0 122 177 58 113 9.06e-15 73.9
Msa0830990 AT2G40350.1 55.932 59 26 0 122 180 67 125 1.03e-14 71.2
Msa0830990 AT5G19790.1 59.016 61 25 0 119 179 19 79 1.17e-14 73.2
Msa0830990 AT5G11190.1 63.333 60 22 0 122 181 7 66 3.32e-14 70.5
Msa0830990 AT1G63030.2 55.000 60 27 0 118 177 26 85 4.53e-14 70.1
Msa0830990 AT1G63030.1 55.000 60 27 0 118 177 26 85 4.53e-14 70.1
Msa0830990 AT4G34410.1 70.175 57 17 0 122 178 136 192 5.29e-14 71.2
Msa0830990 AT1G33760.1 63.934 61 22 0 122 182 20 80 1.06e-13 68.9
Msa0830990 AT1G12890.1 55.357 56 25 0 122 177 21 76 1.13e-13 69.7
Msa0830990 AT5G64750.1 61.111 54 20 1 129 181 192 245 1.19e-13 71.6
Msa0830990 AT1G12610.1 51.667 60 29 0 118 177 26 85 1.82e-13 68.9
Msa0830990 AT1G77200.1 59.322 59 24 0 122 180 43 101 3.20e-13 68.9
Msa0830990 AT1G77640.1 59.091 66 25 1 117 180 36 101 3.39e-13 68.6
Msa0830990 AT2G38340.1 51.807 83 28 3 105 178 55 134 4.62e-13 68.2
Msa0830990 AT1G53910.1 45.918 98 43 1 114 211 117 204 6.33e-13 69.3
Msa0830990 AT1G53910.2 45.918 98 43 1 114 211 117 204 6.33e-13 69.3
Msa0830990 AT1G53910.3 46.809 94 40 1 118 211 119 202 6.62e-13 68.9
Msa0830990 AT3G14230.2 58.209 67 28 0 118 184 120 186 1.48e-12 68.2
Msa0830990 AT3G14230.3 58.209 67 28 0 118 184 119 185 1.55e-12 68.2
Msa0830990 AT3G14230.1 58.209 67 28 0 118 184 124 190 1.76e-12 67.8
Msa0830990 AT2G40220.1 67.797 59 19 0 119 177 52 110 2.76e-12 67.0
Msa0830990 AT2G25820.1 40.690 145 72 3 121 260 25 160 4.82e-12 65.1
Msa0830990 AT3G25890.1 71.053 38 11 0 124 161 133 170 7.22e-12 65.9
Msa0830990 AT3G25890.2 71.053 38 11 0 124 161 133 170 7.22e-12 65.9
Msa0830990 AT1G06160.1 63.333 60 21 1 120 178 80 139 5.29e-11 62.4
Msa0830990 AT5G61590.1 62.069 58 21 1 122 178 107 164 9.88e-11 60.8

Find 53 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGTTGGATCTTTCAAATT+TGG 0.137255 5_4:-4043036 None:intergenic
TTGGGAAGTTCTTGCTGTTT+AGG 0.207034 5_4:+4043458 Msa0830990:CDS
CTGTTTCTGAGGATGGAATT+TGG 0.226527 5_4:+4043331 Msa0830990:CDS
TGTTCAAATCTTGAACCTTT+AGG 0.242120 5_4:+4042643 Msa0830990:CDS
GATCCAACTAAGTTGGGTTT+TGG 0.259771 5_4:+4043048 Msa0830990:CDS
CACAAACAGCACAACCTTCT+TGG 0.270743 5_4:+4042618 Msa0830990:CDS
GACAGAGACACTGGGGAAAA+TGG 0.274624 5_4:+4042881 Msa0830990:CDS
TGGGAAGTTCTTGCTGTTTA+GGG 0.276754 5_4:+4043459 Msa0830990:CDS
TTCAAGTTCGTTCACTTCTT+TGG 0.284717 5_4:+4042822 Msa0830990:CDS
CACAGAATAGAATGAGAGTT+TGG 0.304146 5_4:+4042923 Msa0830990:CDS
GGAATGCAAAACAGAGATAT+TGG 0.345452 5_4:+4042511 Msa0830990:CDS
ACCATTGTCGAAACCGAATT+CGG 0.358811 5_4:-4043369 None:intergenic
AGAACTTCCCAAATCAATTC+AGG 0.364637 5_4:-4043447 None:intergenic
AAGAAGATGAAGAAGAATTC+AGG 0.374931 5_4:+4043171 Msa0830990:CDS
TTTGAAAGATCCAACTAAGT+TGG 0.380517 5_4:+4043041 Msa0830990:CDS
AGGGGAGAATTCTCCGAATT+CGG 0.382016 5_4:+4043356 Msa0830990:CDS
ACAAACAGCACAACCTTCTT+GGG 0.390669 5_4:+4042619 Msa0830990:CDS
GAACGAATGAGCCGTTTAAT+CGG 0.390977 5_4:-4042720 None:intergenic
CACGAAGAAAGCCGATTAAA+CGG 0.400408 5_4:+4042709 Msa0830990:CDS
TTGAAAGATCCAACTAAGTT+GGG 0.405515 5_4:+4043042 Msa0830990:CDS
CGTTTAATCGGCTTTCTTCG+TGG 0.429966 5_4:-4042708 None:intergenic
TTTGTGGTGGTGTTTGTTGA+AGG 0.430916 5_4:-4042601 None:intergenic
TGAAATTGAACTTGAATTTG+TGG 0.433256 5_4:-4042788 None:intergenic
CAAGAAGGTTGTGCTGTTTG+TGG 0.437269 5_4:-4042617 None:intergenic
CTGAGGATGGAATTTGGAAA+GGG 0.444826 5_4:+4043337 Msa0830990:CDS
CTATTTGCCAAAAGGTGAAA+AGG 0.446134 5_4:+4043124 Msa0830990:CDS
TCTCCAAAACCCAACTTAGT+TGG 0.464313 5_4:-4043051 None:intergenic
ACAGAGACACTGGGGAAAAT+GGG 0.468350 5_4:+4042882 Msa0830990:CDS
TCACCAACTGTTTCTGAGGA+TGG 0.477469 5_4:+4043324 Msa0830990:CDS
TCCGAATTCGGTTTCGACAA+TGG 0.480538 5_4:+4043368 Msa0830990:CDS
AATTCAAGCTATTTGCCAAA+AGG 0.481211 5_4:+4043116 Msa0830990:CDS
ATCAATTCAGGATCAAAAGA+TGG 0.507401 5_4:-4043435 None:intergenic
GAGGAGTGAGACAGAGACAC+TGG 0.514041 5_4:+4042872 Msa0830990:CDS
TATTTGCCAAAAGGTGAAAA+GGG 0.519794 5_4:+4043125 Msa0830990:CDS
CGTGCAGCTTATAAGCTTCG+AGG 0.521878 5_4:+4042991 Msa0830990:CDS
GTAAAATATCTCTCTGGCGA+AGG 0.525538 5_4:-4042678 None:intergenic
AAAAGATGGCATTCTTGCTA+AGG 0.531887 5_4:-4043421 None:intergenic
GATTGATGTGAAAATGAAGA+TGG 0.537801 5_4:-4042742 None:intergenic
TCTGAGGATGGAATTTGGAA+AGG 0.539276 5_4:+4043336 Msa0830990:CDS
TGAGGATGGAATTTGGAAAG+GGG 0.545281 5_4:+4043338 Msa0830990:CDS
AAGATTTGAACAGCCCAAGA+AGG 0.553206 5_4:-4042632 None:intergenic
AGGAGTGAGACAGAGACACT+GGG 0.570341 5_4:+4042873 Msa0830990:CDS
GAATTTGTGGTGTATAGTGA+AGG 0.573240 5_4:-4042775 None:intergenic
AATAGAATGAGAGTTTGGCT+TGG 0.577666 5_4:+4042928 Msa0830990:CDS
GAAGGTTGTGCTGTTTGTGG+TGG 0.591819 5_4:-4042614 None:intergenic
CAAACTCTCATTCTATTCTG+TGG 0.612245 5_4:-4042922 None:intergenic
AGGTAAACAGAGGAACCTAA+AGG 0.613113 5_4:-4042658 None:intergenic
CCTAATACCATAATCATGGA+GGG 0.618078 5_4:+4042490 None:intergenic
ATTCCATCCTCAGAAACAGT+TGG 0.628763 5_4:-4043327 None:intergenic
AATTTGTGGTGTATAGTGAA+GGG 0.636368 5_4:-4042774 None:intergenic
GGTTTCGACAATGGTGACAG+AGG 0.648753 5_4:+4043377 Msa0830990:CDS
GGAGTGAGACAGAGACACTG+GGG 0.720682 5_4:+4042874 Msa0830990:CDS
TCTCTGGCGAAGGTAAACAG+AGG 0.752181 5_4:-4042668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTAAAATATCTCTC+TGG - chr5_4:4042687-4042706 None:intergenic 20.0%
!!! ATTTTTGTAAAATATCTCTC+TGG - chr5_4:4042687-4042706 None:intergenic 20.0%
! TGAAATTGAACTTGAATTTG+TGG - chr5_4:4042791-4042810 None:intergenic 25.0%
! TTAGTTGGATCTTTCAAATT+TGG - chr5_4:4043039-4043058 None:intergenic 25.0%
!!! TCTTGTTTTTTGTGATGATT+GGG + chr5_4:4043287-4043306 Msa0830990:CDS 25.0%
!!! TTTTGATCCTGAATTGATTT+GGG + chr5_4:4043440-4043459 Msa0830990:CDS 25.0%
! TGAAATTGAACTTGAATTTG+TGG - chr5_4:4042791-4042810 None:intergenic 25.0%
! TTAGTTGGATCTTTCAAATT+TGG - chr5_4:4043039-4043058 None:intergenic 25.0%
!!! TCTTGTTTTTTGTGATGATT+GGG + chr5_4:4043287-4043306 Msa0830990:CDS 25.0%
!!! TTTTGATCCTGAATTGATTT+GGG + chr5_4:4043440-4043459 Msa0830990:CDS 25.0%
TGTTCAAATCTTGAACCTTT+AGG + chr5_4:4042643-4042662 Msa0830990:CDS 30.0%
GATTGATGTGAAAATGAAGA+TGG - chr5_4:4042745-4042764 None:intergenic 30.0%
AATTTGTGGTGTATAGTGAA+GGG - chr5_4:4042777-4042796 None:intergenic 30.0%
!! CTGTATAGCTTTTTCTTACA+AGG - chr5_4:4042853-4042872 None:intergenic 30.0%
TGTAAGAAAAAGCTATACAG+AGG + chr5_4:4042853-4042872 Msa0830990:CDS 30.0%
TTTGAAAGATCCAACTAAGT+TGG + chr5_4:4043041-4043060 Msa0830990:CDS 30.0%
TTGAAAGATCCAACTAAGTT+GGG + chr5_4:4043042-4043061 Msa0830990:CDS 30.0%
AATTCAAGCTATTTGCCAAA+AGG + chr5_4:4043116-4043135 Msa0830990:CDS 30.0%
TATTTGCCAAAAGGTGAAAA+GGG + chr5_4:4043125-4043144 Msa0830990:CDS 30.0%
AAGAAGATGAAGAAGAATTC+AGG + chr5_4:4043171-4043190 Msa0830990:CDS 30.0%
CAATCATCACAAAAAACAAG+AGG - chr5_4:4043288-4043307 None:intergenic 30.0%
!!! CTCTTGTTTTTTGTGATGAT+TGG + chr5_4:4043286-4043305 Msa0830990:CDS 30.0%
ATCAATTCAGGATCAAAAGA+TGG - chr5_4:4043438-4043457 None:intergenic 30.0%
! CTTTTGATCCTGAATTGATT+TGG + chr5_4:4043439-4043458 Msa0830990:CDS 30.0%
TGTTCAAATCTTGAACCTTT+AGG + chr5_4:4042643-4042662 Msa0830990:CDS 30.0%
GATTGATGTGAAAATGAAGA+TGG - chr5_4:4042745-4042764 None:intergenic 30.0%
AATTTGTGGTGTATAGTGAA+GGG - chr5_4:4042777-4042796 None:intergenic 30.0%
!! CTGTATAGCTTTTTCTTACA+AGG - chr5_4:4042853-4042872 None:intergenic 30.0%
TGTAAGAAAAAGCTATACAG+AGG + chr5_4:4042853-4042872 Msa0830990:CDS 30.0%
TTTGAAAGATCCAACTAAGT+TGG + chr5_4:4043041-4043060 Msa0830990:CDS 30.0%
TTGAAAGATCCAACTAAGTT+GGG + chr5_4:4043042-4043061 Msa0830990:CDS 30.0%
AATTCAAGCTATTTGCCAAA+AGG + chr5_4:4043116-4043135 Msa0830990:CDS 30.0%
TATTTGCCAAAAGGTGAAAA+GGG + chr5_4:4043125-4043144 Msa0830990:CDS 30.0%
AAGAAGATGAAGAAGAATTC+AGG + chr5_4:4043171-4043190 Msa0830990:CDS 30.0%
CAATCATCACAAAAAACAAG+AGG - chr5_4:4043288-4043307 None:intergenic 30.0%
!!! CTCTTGTTTTTTGTGATGAT+TGG + chr5_4:4043286-4043305 Msa0830990:CDS 30.0%
ATCAATTCAGGATCAAAAGA+TGG - chr5_4:4043438-4043457 None:intergenic 30.0%
! CTTTTGATCCTGAATTGATT+TGG + chr5_4:4043439-4043458 Msa0830990:CDS 30.0%
GGAATGCAAAACAGAGATAT+TGG + chr5_4:4042511-4042530 Msa0830990:CDS 35.0%
GAATTTGTGGTGTATAGTGA+AGG - chr5_4:4042778-4042797 None:intergenic 35.0%
! TTCAAGTTCGTTCACTTCTT+TGG + chr5_4:4042822-4042841 Msa0830990:CDS 35.0%
CAAACTCTCATTCTATTCTG+TGG - chr5_4:4042925-4042944 None:intergenic 35.0%
CACAGAATAGAATGAGAGTT+TGG + chr5_4:4042923-4042942 Msa0830990:CDS 35.0%
AATAGAATGAGAGTTTGGCT+TGG + chr5_4:4042928-4042947 Msa0830990:CDS 35.0%
CTATTTGCCAAAAGGTGAAA+AGG + chr5_4:4043124-4043143 Msa0830990:CDS 35.0%
! CTTTTTCCCTTTTCACCTTT+TGG - chr5_4:4043134-4043153 None:intergenic 35.0%
AAAAGATGGCATTCTTGCTA+AGG - chr5_4:4043424-4043443 None:intergenic 35.0%
AGAACTTCCCAAATCAATTC+AGG - chr5_4:4043450-4043469 None:intergenic 35.0%
GGAATGCAAAACAGAGATAT+TGG + chr5_4:4042511-4042530 Msa0830990:CDS 35.0%
GAATTTGTGGTGTATAGTGA+AGG - chr5_4:4042778-4042797 None:intergenic 35.0%
! TTCAAGTTCGTTCACTTCTT+TGG + chr5_4:4042822-4042841 Msa0830990:CDS 35.0%
CAAACTCTCATTCTATTCTG+TGG - chr5_4:4042925-4042944 None:intergenic 35.0%
CACAGAATAGAATGAGAGTT+TGG + chr5_4:4042923-4042942 Msa0830990:CDS 35.0%
AATAGAATGAGAGTTTGGCT+TGG + chr5_4:4042928-4042947 Msa0830990:CDS 35.0%
CTATTTGCCAAAAGGTGAAA+AGG + chr5_4:4043124-4043143 Msa0830990:CDS 35.0%
! CTTTTTCCCTTTTCACCTTT+TGG - chr5_4:4043134-4043153 None:intergenic 35.0%
AAAAGATGGCATTCTTGCTA+AGG - chr5_4:4043424-4043443 None:intergenic 35.0%
AGAACTTCCCAAATCAATTC+AGG - chr5_4:4043450-4043469 None:intergenic 35.0%
! TTTGTGGTGGTGTTTGTTGA+AGG - chr5_4:4042604-4042623 None:intergenic 40.0%
ACAAACAGCACAACCTTCTT+GGG + chr5_4:4042619-4042638 Msa0830990:CDS 40.0%
AAGATTTGAACAGCCCAAGA+AGG - chr5_4:4042635-4042654 None:intergenic 40.0%
AGGTAAACAGAGGAACCTAA+AGG - chr5_4:4042661-4042680 None:intergenic 40.0%
GTAAAATATCTCTCTGGCGA+AGG - chr5_4:4042681-4042700 None:intergenic 40.0%
CACGAAGAAAGCCGATTAAA+CGG + chr5_4:4042709-4042728 Msa0830990:CDS 40.0%
GAACGAATGAGCCGTTTAAT+CGG - chr5_4:4042723-4042742 None:intergenic 40.0%
!! GATCCAACTAAGTTGGGTTT+TGG + chr5_4:4043048-4043067 Msa0830990:CDS 40.0%
TCTCCAAAACCCAACTTAGT+TGG - chr5_4:4043054-4043073 None:intergenic 40.0%
CAAAAAACAAGAGGCGAAAG+TGG - chr5_4:4043279-4043298 None:intergenic 40.0%
!!! GTTTTCACCAACTGTTTCTG+AGG + chr5_4:4043320-4043339 Msa0830990:CDS 40.0%
ATTCCATCCTCAGAAACAGT+TGG - chr5_4:4043330-4043349 None:intergenic 40.0%
!! CTGTTTCTGAGGATGGAATT+TGG + chr5_4:4043331-4043350 Msa0830990:CDS 40.0%
TCTGAGGATGGAATTTGGAA+AGG + chr5_4:4043336-4043355 Msa0830990:CDS 40.0%
CTGAGGATGGAATTTGGAAA+GGG + chr5_4:4043337-4043356 Msa0830990:CDS 40.0%
TGAGGATGGAATTTGGAAAG+GGG + chr5_4:4043338-4043357 Msa0830990:CDS 40.0%
ACCATTGTCGAAACCGAATT+CGG - chr5_4:4043372-4043391 None:intergenic 40.0%
! TTTGTGGTGGTGTTTGTTGA+AGG - chr5_4:4042604-4042623 None:intergenic 40.0%
ACAAACAGCACAACCTTCTT+GGG + chr5_4:4042619-4042638 Msa0830990:CDS 40.0%
AAGATTTGAACAGCCCAAGA+AGG - chr5_4:4042635-4042654 None:intergenic 40.0%
AGGTAAACAGAGGAACCTAA+AGG - chr5_4:4042661-4042680 None:intergenic 40.0%
GTAAAATATCTCTCTGGCGA+AGG - chr5_4:4042681-4042700 None:intergenic 40.0%
CACGAAGAAAGCCGATTAAA+CGG + chr5_4:4042709-4042728 Msa0830990:CDS 40.0%
GAACGAATGAGCCGTTTAAT+CGG - chr5_4:4042723-4042742 None:intergenic 40.0%
!! GATCCAACTAAGTTGGGTTT+TGG + chr5_4:4043048-4043067 Msa0830990:CDS 40.0%
TCTCCAAAACCCAACTTAGT+TGG - chr5_4:4043054-4043073 None:intergenic 40.0%
CAAAAAACAAGAGGCGAAAG+TGG - chr5_4:4043279-4043298 None:intergenic 40.0%
!!! GTTTTCACCAACTGTTTCTG+AGG + chr5_4:4043320-4043339 Msa0830990:CDS 40.0%
ATTCCATCCTCAGAAACAGT+TGG - chr5_4:4043330-4043349 None:intergenic 40.0%
!! CTGTTTCTGAGGATGGAATT+TGG + chr5_4:4043331-4043350 Msa0830990:CDS 40.0%
TCTGAGGATGGAATTTGGAA+AGG + chr5_4:4043336-4043355 Msa0830990:CDS 40.0%
CTGAGGATGGAATTTGGAAA+GGG + chr5_4:4043337-4043356 Msa0830990:CDS 40.0%
TGAGGATGGAATTTGGAAAG+GGG + chr5_4:4043338-4043357 Msa0830990:CDS 40.0%
ACCATTGTCGAAACCGAATT+CGG - chr5_4:4043372-4043391 None:intergenic 40.0%
!! CAAGAAGGTTGTGCTGTTTG+TGG - chr5_4:4042620-4042639 None:intergenic 45.0%
CACAAACAGCACAACCTTCT+TGG + chr5_4:4042618-4042637 Msa0830990:CDS 45.0%
! CGTTTAATCGGCTTTCTTCG+TGG - chr5_4:4042711-4042730 None:intergenic 45.0%
ACAGAGACACTGGGGAAAAT+GGG + chr5_4:4042882-4042901 Msa0830990:CDS 45.0%
!! TCACCAACTGTTTCTGAGGA+TGG + chr5_4:4043324-4043343 Msa0830990:CDS 45.0%
AGGGGAGAATTCTCCGAATT+CGG + chr5_4:4043356-4043375 Msa0830990:CDS 45.0%
TCCGAATTCGGTTTCGACAA+TGG + chr5_4:4043368-4043387 Msa0830990:CDS 45.0%
!! CAAGAAGGTTGTGCTGTTTG+TGG - chr5_4:4042620-4042639 None:intergenic 45.0%
CACAAACAGCACAACCTTCT+TGG + chr5_4:4042618-4042637 Msa0830990:CDS 45.0%
! CGTTTAATCGGCTTTCTTCG+TGG - chr5_4:4042711-4042730 None:intergenic 45.0%
ACAGAGACACTGGGGAAAAT+GGG + chr5_4:4042882-4042901 Msa0830990:CDS 45.0%
!! TCACCAACTGTTTCTGAGGA+TGG + chr5_4:4043324-4043343 Msa0830990:CDS 45.0%
AGGGGAGAATTCTCCGAATT+CGG + chr5_4:4043356-4043375 Msa0830990:CDS 45.0%
TCCGAATTCGGTTTCGACAA+TGG + chr5_4:4043368-4043387 Msa0830990:CDS 45.0%
!! GAAGGTTGTGCTGTTTGTGG+TGG - chr5_4:4042617-4042636 None:intergenic 50.0%
TCTCTGGCGAAGGTAAACAG+AGG - chr5_4:4042671-4042690 None:intergenic 50.0%
AGGAGTGAGACAGAGACACT+GGG + chr5_4:4042873-4042892 Msa0830990:CDS 50.0%
GACAGAGACACTGGGGAAAA+TGG + chr5_4:4042881-4042900 Msa0830990:CDS 50.0%
CGTGCAGCTTATAAGCTTCG+AGG + chr5_4:4042991-4043010 Msa0830990:CDS 50.0%
GGTTTCGACAATGGTGACAG+AGG + chr5_4:4043377-4043396 Msa0830990:CDS 50.0%
!! GAAGGTTGTGCTGTTTGTGG+TGG - chr5_4:4042617-4042636 None:intergenic 50.0%
TCTCTGGCGAAGGTAAACAG+AGG - chr5_4:4042671-4042690 None:intergenic 50.0%
AGGAGTGAGACAGAGACACT+GGG + chr5_4:4042873-4042892 Msa0830990:CDS 50.0%
GACAGAGACACTGGGGAAAA+TGG + chr5_4:4042881-4042900 Msa0830990:CDS 50.0%
CGTGCAGCTTATAAGCTTCG+AGG + chr5_4:4042991-4043010 Msa0830990:CDS 50.0%
GGTTTCGACAATGGTGACAG+AGG + chr5_4:4043377-4043396 Msa0830990:CDS 50.0%
GAGGAGTGAGACAGAGACAC+TGG + chr5_4:4042872-4042891 Msa0830990:CDS 55.0%
GGAGTGAGACAGAGACACTG+GGG + chr5_4:4042874-4042893 Msa0830990:CDS 55.0%
GAGGAGTGAGACAGAGACAC+TGG + chr5_4:4042872-4042891 Msa0830990:CDS 55.0%
GGAGTGAGACAGAGACACTG+GGG + chr5_4:4042874-4042893 Msa0830990:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4042505 4043479 4042505 ID=Msa0830990;Name=Msa0830990
chr5_4 mRNA 4042505 4043479 4042505 ID=Msa0830990-mRNA-1;Parent=Msa0830990;Name=Msa0830990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|324
chr5_4 exon 4042505 4043479 4042505 ID=Msa0830990-mRNA-1:exon:1576;Parent=Msa0830990-mRNA-1
chr5_4 CDS 4042505 4043479 4042505 ID=Msa0830990-mRNA-1:cds;Parent=Msa0830990-mRNA-1
Gene Sequence

>Msa0830990

ATGGAGGGAATGCAAAACAGAGATATTGGATCATGTTTATCAAATCTCATATTATCAAGTTCAACAAACACACTTGACTCTATTTTCTCAGATATTCCTTCAACAAACACCACCACAAACAGCACAACCTTCTTGGGCTGTTCAAATCTTGAACCTTTAGGTTCCTCTGTTTACCTTCGCCAGAGAGATATTTTACAAAAATTCCACGAAGAAAGCCGATTAAACGGCTCATTCGTTCCATCTTCATTTTCACATCAATCTCTACTAAACCCTTCACTATACACCACAAATTCAAGTTCAATTTCAAGTTTTTCATGTTCAAGTTCGTTCACTTCTTTGGTGAATCCTTGTAAGAAAAAGCTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTAGCTGAGATTAGACTTCCACAGAATAGAATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTCGAGGCGAATACGCGCGTTTAAATTTTCCAAATTTGAAAGATCCAACTAAGTTGGGTTTTGGAGATTCTACTAGATTGAATGCTTTGAAGAATTCTGTTGATGCTAAAATTCAAGCTATTTGCCAAAAGGTGAAAAGGGAAAAAGCTAAAAAGATTGCTGCAAAGAAGATGAAGAAGAATTCAGGTAGTAATAATGATACAAAGAGTGATAAAAATTCAGACAAGATTATTAATTCATCTTCTTGTTCTTCTTCTTCGTCTTCGTTACCACTTTCGCCTCTTGTTTTTTGTGATGATTGGGTGAATGAATTGTTTTCACCAACTGTTTCTGAGGATGGAATTTGGAAAGGGGAGAATTCTCCGAATTCGGTTTCGACAATGGTGACAGAGGAAACAGAGTTTGAAGATTGTTCCTTAGCAAGAATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTTGCTGTTTAG
Protein sequence

>Msa0830990

MEGMQNRDIGSCLSNLILSSSTNTLDSIFSDIPSTNTTTNSTTFLGCSNLEPLGSSVYLRQRDILQKFHEESRLNGSFVPSSFSHQSLLNPSLYTTNSSSISSFSCSSSFTSLVNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTRLNALKNSVDAKIQAICQKVKREKAKKIAAKKMKKNSGSNNDTKSDKNSDKIINSSSCSSSSSSLPLSPLVFCDDWVNELFSPTVSEDGIWKGENSPNSVSTMVTEETEFEDCSLARMPSFDPELIWEVLAV*