AlfalfaGEDB | Msa1405810

M. sativa cultivar zhongmu-4 / Msa1405810

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405810	KEH40763.1	94.444	72	4	0	1	72	1	72	7.95e-41	138

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405810	A0A072VH50	94.444	72	4	0	1	72	1	72	3.80e-41	138

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013290	Msa1405810	0.924392	7.493980e-90	-8.615850e-47
Msa0032580	Msa1405810	0.808293	3.325877e-50	-8.615850e-47
Msa0032610	Msa1405810	0.809889	1.513397e-50	-8.615850e-47
Msa0085360	Msa1405810	-0.800593	1.339868e-48	-8.615850e-47
Msa0106520	Msa1405810	0.998823	5.582662e-278	-8.615850e-47
Msa0115390	Msa1405810	0.818520	1.877748e-52	-8.615850e-47
Msa0172780	Msa1405810	0.825171	5.420643e-54	-8.615850e-47
Msa0172970	Msa1405810	0.809004	2.343891e-50	-8.615850e-47
Msa0173990	Msa1405810	0.800089	1.697490e-48	-8.615850e-47
Msa0177700	Msa1405810	-0.802787	4.752491e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405810	MtrunA17_Chr1g0162551	94.444	72	4	0	1	72	1	72	7.31e-45	138
Msa1405810	MtrunA17_Chr1g0162491	77.778	72	11	1	1	72	1	67	1.27e-34	112
Msa1405810	MtrunA17_Chr4g0034081	52.000	75	30	3	1	71	1	73	8.39e-20	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 15 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGAGAAGGAAGTTGGA+AGG	0.492250	tig0023172:+52284	Msa1405810:CDS
ACATATTGTTGACTCAGATA+AGG	0.525899	tig0023172:-52350	None:intergenic
ACCAATCCATACCTCTACCA+TGG	0.656584	tig0023172:-52191	None:intergenic
AGAAGAGAAGGAAGTTGGAA+GGG	0.471300	tig0023172:+52285	Msa1405810:CDS
AGATGGTTTAGAAGAAGAGA+AGG	0.510389	tig0023172:+52273	Msa1405810:CDS
AGTTGGAAGGGAAGCTCAAA+AGG	0.457096	tig0023172:+52297	Msa1405810:CDS
ATCTTTGGATTTGGAAAATT+TGG	0.091946	tig0023172:-52254	None:intergenic
CTCTTCTTCTAAACCATCTT+TGG	0.198131	tig0023172:-52269	None:intergenic
GCCATGGTAGAGGTATGGAT+TGG	0.607798	tig0023172:+52190	Msa1405810:CDS
GTCAACAATATGTTTGCTTA+TGG	0.258869	tig0023172:+52360	Msa1405810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTAAACCATCTTTGGATT+TGG	-	tig0023172:52266-52285	None:intergenic	30.0%
GTCAACAATATGTTTGCTTA+TGG	+	tig0023172:52360-52379	Msa1405810:CDS	30.0%
TAGAACTTTCTCTTTGAGCT+TGG	-	tig0023172:52224-52243	None:intergenic	35.0%
CTCTTCTTCTAAACCATCTT+TGG	-	tig0023172:52272-52291	None:intergenic	35.0%
AGATGGTTTAGAAGAAGAGA+AGG	+	tig0023172:52273-52292	Msa1405810:CDS	35.0%
TTAGAAGAAGAGAAGGAAGT+TGG	+	tig0023172:52280-52299	Msa1405810:CDS	35.0%
AAGAAGAGAAGGAAGTTGGA+AGG	+	tig0023172:52284-52303	Msa1405810:CDS	40.0%
AGAAGAGAAGGAAGTTGGAA+GGG	+	tig0023172:52285-52304	Msa1405810:CDS	40.0%
ACCAATCCATACCTCTACCA+TGG	-	tig0023172:52194-52213	None:intergenic	45.0%
AGTTGGAAGGGAAGCTCAAA+AGG	+	tig0023172:52297-52316	Msa1405810:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023172	gene	52184	52402	52184	ID=Msa1405810;Name=Msa1405810
tig0023172	mRNA	52184	52402	52184	ID=Msa1405810-mRNA-1;Parent=Msa1405810;Name=Msa1405810-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|72
tig0023172	exon	52184	52402	52184	ID=Msa1405810-mRNA-1:exon:24263;Parent=Msa1405810-mRNA-1
tig0023172	CDS	52184	52402	52184	ID=Msa1405810-mRNA-1:cds;Parent=Msa1405810-mRNA-1

Gene Sequence	>Msa1405810 ATGTCGGCCATGGTAGAGGTATGGATTGGTGAGCTAGCCAAGCTCAAAGAGAAAGTTCTAACCAACAAAACCAAATTTTCCAAATCCAAAGATGGTTTAGAAGAAGAGAAGGAAGTTGGAAGGGAAGCTCAAAAGGAGGTCATAGCTGCTCAAAGAGACACTACAACCTTATCTGAGTCAACAATATGTTTGCTTATGGATAGATTTGTGCCTTGCTAA
Protein sequence	>Msa1405810 MSAMVEVWIGELAKLKEKVLTNKTKFSKSKDGLEEEKEVGREAQKEVIAAQRDTTTLSESTICLLMDRFVPC*